niman

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014303.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18474 18474 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18465 18465 100% 0.0 99% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18462 18462 100% 0.0 99% KX156774.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18462 18462 100% 0.0 99% KU647676.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18456 18456 100% 0.0 99% KU820897.5 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18456 18456 100% 0.0 99% KX247646.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18456 18456 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18456 18456 100% 0.0 99% KX087102.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18444 18444 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18438 18438 100% 0.0 99% KU922923.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18433 18433 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18429 18429 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX548902.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX447510.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU991811.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18402 18402 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18402 18402 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18399 18399 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX447513.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18390 18390 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX447511.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18390 18390 100% 0.0 99% KX280026.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18390 18390 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18384 18384 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18381 18381 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18375 18375 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18375 18375 100% 0.0 99% KX197192.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18372 18372 100% 0.0 99% KX811222.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18372 18372 99% 0.0 99% KU497555.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18366 18366 100% 0.0 99% KY014297.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18366 18366 100% 0.0 99% KX879604.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18366 18366 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU758877.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18366 18366 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18363 18363 100% 0.0 99% KU940228.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365777.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18357 18357 100% 0.0 99% KX879603.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU501217.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU312312.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18354 18354 100% 0.0 99% KY014304.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18354 18354 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU501216.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18350 18350 100% 0.0 99% KY014327.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447517.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU937936.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18348 18348 100% 0.0 99% KU501215.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18345 18345 100% 0.0 99% KY014315.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18345 18345 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18345 18345 100% 0.0 99% KX087101.2 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18339 18339 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18339 18339 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18339 18339 100% 0.0 99% KX856011.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18339 18339 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18339 18339 100% 0.0 99% KX377337.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU820898.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18336 18336 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18336 18336 100% 0.0 99% KU870645.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18330 18330 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18330 18330 100% 0.0 99% KU853012.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18327 18327 100% 0.0 99% KY014300.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18327 18327 100% 0.0 99% LC190723.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18323 18323 100% 0.0 99% KX766028.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18321 18321 100% 0.0 99% KY014321.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU761564.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18318 18318 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX842449.2 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18312 18312 100% 0.0 99% KX766029.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18309 18309 100% 0.0 99% KX673530.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18309 18309 100% 0.0 99% KX117076.1 Select seq gb|KY014320.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds 18305 18305 100% 0.0 99% KY014320.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18305 18305 100% 0.0 99% KX922706.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014323.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014314.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX922703.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX838906.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX832731.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18300 18300 100% 0.0 99% KY014316.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX922704.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU963796.1

LOCUS KY014303 10658 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds. ACCESSION KY014303 VERSION KY014303.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05861583 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10658) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Park,D.J., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.12.0-51-g8588fdb Assembly Name :: DOM_2016_BB-0127_SER-1 Coverage :: 231x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10658 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Dominican Republic: Santo Domingo" /collection_date="11-Apr-2016" /collected_by="Hospital General de la Plaza de la Salud, Santo Domingo, Dominican Republic" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08524.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLTRGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..>10658 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagaaa ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactatatg tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagccgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggtttcg ctttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgtt 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg acaatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 taaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaattctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tcccttatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgtggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaacgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg tcagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttct gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcaatggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg agggcgacct 3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgac aacatcacct tggcaatcct ggctgctctg acaccactga cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgacg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagcc ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccac tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactgcag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac 5821 tgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaata aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataacct acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttctg ggcttgatta ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga 6961 gggggcaacc ataggattct caatggacat tgacttgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc cgtcttaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccccaca caagggtcag cgtcctctct aataaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg 8821 gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggacac ccgcattagc aggtttgatc tggagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaataaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ctgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttgcgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg atgaagaaaa gtacatggac tacctatcca cccaagttcg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactagtggt tagaggag

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18503 18503 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18493 18493 100% 0.0 99% KY014299.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18438 18438 100% 0.0 99% KY014300.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18438 18438 100% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18435 18435 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18433 18433 100% 0.0 99% KU853012.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18429 18429 100% 0.0 99% KY014295.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18429 18429 100% 0.0 99% LC190723.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX842449.2 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014321.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922704.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18408 18408 100% 0.0 99% KY014314.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18406 18406 100% 0.0 99% KX838904.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18404 18404 100% 0.0 99% KY014316.1 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014324.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18339 18339 100% 0.0 99% KX280026.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18336 18336 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18336 18336 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18330 18330 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU991811.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18321 18321 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18321 18321 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18321 18321 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18318 18318 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18318 18318 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18312 18312 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18312 18312 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18309 18309 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18309 18309 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18309 18309 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18309 18309 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18309 18309 100% 0.0 99% KU926309.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014303.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18303 18303 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18300 18300 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18300 18300 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18291 18291 100% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18291 18291 100% 0.0 99% KX156776.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18289 18289 100% 0.0 99% KY014297.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18287 18287 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18285 18285 100% 0.0 99% KX156774.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18283 18283 100% 0.0 99% KY014327.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU820897.5 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18282 18282 100% 0.0 99% KX087102.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18278 18278 100% 0.0 99% KY014315.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18276 18276 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18273 18273 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18273 18273 100% 0.0 99% KX806557.2 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18273 18273 100% 0.0 99% KU922923.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18267 18267 100% 0.0 99% KX893855.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18267 18267 100% 0.0 99% KU870645.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18264 18264 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18247 18247 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU740184.2

LOCUS KY014322 10659 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds. ACCESSION KY014322 VERSION KY014322.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05761898 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10659) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-03_MOS-1 Coverage :: 1331x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10659 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS" /isolation_source="pool of 40 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="23-Aug-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08543.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRNGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..10659 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact tctcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ctgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtattcc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgagactg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggaatgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcacc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttctg ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg ggagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacctgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ttggagcggc tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccctaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg 8821 gccacgagtc tgcaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaataaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagttcg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactagtggt tagaggaga

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX842449.2 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18511 18511 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18509 18509 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18507 18507 100% 0.0 99% KX922704.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18502 18502 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18498 18498 100% 0.0 99% KY014324.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18462 18462 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18462 18462 100% 0.0 99% KY014300.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18456 18456 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18456 18456 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18453 18453 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014321.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18435 18435 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18429 18429 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18429 18429 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX838906.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18419 18419 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18408 18408 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18363 18363 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18357 18357 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18357 18357 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18354 18354 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18345 18345 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18345 18345 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18345 18345 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18339 18339 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18339 18339 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18336 18336 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18336 18336 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18330 18330 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18330 18330 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18330 18330 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18330 18330 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18330 18330 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18327 18327 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18321 18321 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18321 18321 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18318 18318 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18312 18312 100% 0.0 99% KY014297.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18312 18312 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18312 18312 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18309 18309 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18309 18309 99% 0.0 99% KU497555.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18305 18305 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18303 18303 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18303 18303 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18300 18300 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18300 18300 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18294 18294 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18294 18294 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18294 18294 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18294 18294 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18294 18294 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18294 18294 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18291 18291 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18291 18291 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18291 18291 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18291 18291 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18289 18289 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18285 18285 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18276 18276 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18269 18269 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU740184.2

LOCUS KY014295 10619 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds. ACCESSION KY014295 VERSION KY014295.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05792872 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10619) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-010_URI-1 Coverage :: 40x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10619 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-010-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="22-Jun-2016" /collected_by="Florida Department of Health, Florida, USA" /note="patient traveled to Cuba and returned 21 days prior to sample collection, but may have been infected in Miami, FL" 5'UTR <1..87 CDS 88..10359 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08516.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10360..>10619 ORIGIN 1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactacatgt acttggacag aaacgatgct ggggaggcca tatctttccc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca 901 acgagccaaa aagttatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggctgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaggttga gataacgccc aattcaccaa gagccgaagc caccctgggg 1501 ggttttggaa gcctaggact ggattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg taccgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgcc 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttgg gagatacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaatcctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2401 ggatctattt ccctcatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc agcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaatgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt tagagcagca aagacaaata acagctttgt cgtggatggt 2881 gacacactga aggaatgccc actcaaacat agagcatgga acagctttct tgtggaggat 2941 catgggttcg gggtatttca cactagtgtc tggctcaagg ttagagaaga ttattcatta 3001 gagtgtgatc cagccgttat tggaacagct gttaagggaa aggaggctgt acacagtgat 3061 ctaggctact ggattgagag tgagaagaat gacacatgga ggctgaagag ggcccatctg 3121 atcgagatga aaacatgtga atggccaaag tcccacacat tgtggacaga tggaatagaa 3181 gagagtgatc tgatcatacc caagtcttta gctgggccac tcagccatca caataccaga 3241 gagggctaca ggacccaaat gaaagggcca tggcacagtg aagagcttga aattcggttt 3301 gaggaatgcc caggcactaa ggtccacgtg gaggaaacat gtggaacaag aggaccatct 3361 ctgagatcaa ccactgcaag cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca 3421 atgcccccac tgtcgttccg ggctaaagat ggctgttggt atggaatgga gataaggccc 3481 aggaaagaac cagaaagcaa cttagtaagg tcagtggtga ctgcaggatc aactgatcac 3541 atggatcact tctcccttgg agtgcttgtg attctgctca tggtgcagga agggctgaag 3601 aagagaatga ccacaaagat catcataagc acatcaatgg cagtgctggt agctatgatc 3661 ctgggaggat tttcaatgag tgacctggct aagcttgcaa ttttgatggg tgccaccttc 3721 gcggaaatga acactggagg agatgtagct catctggcgc tgatagcggc attcaaagtc 3781 agaccagcgt tgctggtatc tttcatcttc agagctaatt ggacaccccg tgaaagcatg 3841 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 3901 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 3961 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca 4021 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg 4081 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct 4141 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag 4201 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga 4261 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 4321 gtcagttacg tggtctcagg aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc 4381 acatgggaaa aagatgcgga agtcactgga aacagtcccc ggctcgatgt ggcgctagat 4441 gagagtggtg atttctccct ggtggaggat gacggtcccc ccatgagaga gatcatactc 4501 aaggtggtcc tgatgaccat ctgtggcatg aacccaatag ccataccctt tgcagctgga 4561 gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg ctctatggga tgtgcctgct 4621 cccaaggaag taaaaaaggg ggagaccaca gatggagtgt acagagtaat gactcgtaga 4681 ctgctaggtt caacacaagt tggagtggga gttatgcaag agggggtctt tcacactatg 4741 tggcacgtca caaaaggatc cgcgctgaga agcggtgaag ggagacttga tccatactgg 4801 ggagatgtca agcaggatct ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg 4861 gacgggcaca gcgaggtgca gctcttggcc gtgccccccg gagagagagc gaggaacatc 4921 cagactctgc ccggaatatt taagacaaag gatggggaca ttggagcggt tgcgctggat 4981 tacccagcag gaacttcagg atctccaatc ctagacaagt gtgggagagt gataggactt 5041 tatggcaatg gggtcgtgat caaaaatggg agttatgtta gtgccatcac ccaagggagg 5101 agggaggaag agactcctgt tgagtgcttc gagccttcga tgctgaagaa gaagcagcta 5161 actgtcttag acttgcatcc tggagctggg aaaaccagga gagttcttcc tgaaatagtc 5221 cgtgaagcta taaaaacaag actccgtact gtgatcttag ctccaaccag ggttgtcgct 5281 gctgaaatgg aggaagccct tagagggctt ccagtgcgtt atatgacaac agcagtcaat 5341 gtcacccatt ctggaacaga aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt 5401 ctactacagc caatcagagt ccccaactat aatctgtata ttatggatga ggcccacttc 5461 acagatccct caagtatagc agcaagagga tacatttcaa caagggttga gatgggcgag 5521 gcggctgcca tcttcatgac cgccacgcca ccaggaaccc gtgacgcatt tccggactcc 5581 aactcaccaa ttatggacac cgaagtggaa gtcccagaga gagcctggag ctcaggcttt 5641 gattgggtga cggatcattc tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc 5701 aatgagatcg cagcttgtct gacaaaggct ggaaaacggg tcatacagct cagcagaaag 5761 acttttgaga cagagttcca gaaaacaaaa catcaagagt gggactttgt cgtgacaacc 5821 gacatttcag agatgggcgc caactttaaa gctgaccgtg tcatagattc caggagatgc 5881 ctaaagccgg tcatacttga tggcgagaga gtcattctgg ctggacccat gcctgtcaca 5941 catgccagcg ctgcccagag gagggggcgc ataggcagga atcccaacaa acctggagat 6001 gagtatctgt atggaggtgg gtgcgcagag actgacgaag accatgcaca ctggcttgaa 6061 gcaagaatgc tccttgacaa tatttacctc caagatggcc tcatagcctc gctctatcga 6121 cctgaggccg acaaagtagc agccattgag ggagagttca agcttaggac ggagcaaagg 6181 aagacctttg tggaactcat gaaaagagga gatcttcctg tttggctggc ctatcaggtt 6241 gcatctgccg gaataactta cacagataga agatggtgct ttgatggcac gaccaacaac 6301 accataatgg aagacagtgt gccggcagag gtgtggacca gacacggaga gaaaagagtg 6361 ctcaaaccga ggtggatgga cgccagagtt tgttcagatc atgcggccct gaagtcattc 6421 aaggagtttg ccgctgggaa aagaggagcg gcttttggag tgatggaagc cctgggaaca 6481 ctgccaggac acatgacaga gagattccag gaagccattg acaacctcgc tgtgctcatg 6541 cgggcagaga ctggaagcag gccttacaaa gccgcggcgg cccaattgcc ggagacccta 6601 gagaccatta tgcttttggg gttgctggga acagtctcgc tgggaatctt tttcgtcttg 6661 atgaggaaca agggcatagg gaagatgggc tttggaatgg tgactcttgg ggccagcgca 6721 tggctcatgt ggctctcgga aattgagcca gccagaattg catgtgtcct cattgttgtg 6781 ttcctattgc tggtggtgct catacctgag ccagaaaagc aaagatctcc ccaggacaac 6841 caaatggcaa tcatcatcat ggtagcagta ggtcttctag gcttgatcac cgccaatgaa 6901 ctcggatggt tggagagaac aaagagtgac ctaagccatc taatgggaag gagagaggag 6961 ggagcaacca taggattctc aatggacatt gacctgcggc cagcctcagc ttgggccatc 7021 tatgctgcct tgacaacttt cattacccca gccgtccaac atgcagtgac cacttcatac 7081 aacaactact ccttaatggc gatggccacg caagctggag tgttgtttgg tatgggcaaa 7141 gggatgccat tctacgcatg ggactttgga gtcccgctgc taatgatagg ttgctactca 7201 caattaacac ccctgaccct aatagtggcc atcattttgc tcgtggcgca ctacatgtac 7261 ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc agaagagaac ggcagctggc 7321 atcatgaaga accctgttgt ggatggaata gtggtgactg acattgacac aatgacaatt 7381 gacccccaag tggagaaaaa gatgggacag gtgctactca tagcagtagc cgtctccagc 7441 gccatactgt cgcggaccgc ctgggggtgg ggggaggctg gggccctgat cacagccgca 7501 acttccactt tgtgggaagg ctctccgaac aagtactgga actcctctac agccacttca 7561 ctgtgtaaca tttttagggg aagttacttg gctggagctt ctctaatcta cacagtaaca 7621 agaaacgctg gcttggtcaa gagacgtggg ggtggaacag gagagaccct gggagagaaa 7681 tggaaggccc gcttgaacca gatgtcggcc ctggagttct actcctacaa aaagtcaggc 7741 atcaccgagg tgtgcagaga agaggcccgc cgcgccctca aggacggtgt ggcaacggga 7801 ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt tggtggagcg gggatacctg 7861 cagccctatg gaaaggtcat tgatcttgga tgtggcagag ggggctggag ttactacgcc 7921 gccaccatcc gcaaagttca agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa 7981 gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc gtctcaagag tggggtggac 8041 gtctttcata tggcggctga gccgtgtgac acgttgctat gtgacatagg tgagtcatca 8101 tctagtcctg aagtggaaga agcacggacg ctcagagtcc tctccatggt gggggattgg 8161 cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt gcccatacac cagcactatg 8221 atggaaaccc tggagcgact gcagcgtagg tatgggggag gactggtcag agtgccactc 8281 tcccgcaact ctacacatga gatgtactgg gtctctggag cgaaaagcaa caccataaaa 8341 agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg acgggcctag gaggccagtg 8401 aaatatgagg aggatgtgaa tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa 8461 gctcccaaca tgaagatcat tggtaaccgc attgaaagga tccgcagtga gcacgcggaa 8521 acgtggttct ttgacgagaa ccacccatat aggacatggg cttaccatgg aagctatgag 8581 gcccccacac aagggtcagc atcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa 8641 ccctgggatg tggtgactgg agtcacagga atagccatga ccgacaccac accgtatggt 8701 cagcaaagag ttttcaagga aaaagtggac actagggtgc cagaccccca agaaggcact 8761 cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg 8821 ccacgagtct gtaccaaaga agagttcatc aacaaggttc gtagcaatgc agcattaggg 8881 gcaatatttg aagaggaaaa agagtggaag actgcagtgg aagctgtgaa cgatccaagg 8941 ttctgggctc tagtggacaa ggaaagagag caccacctga gaggagagtg ccagagttgt 9001 gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg aatttggaaa ggccaagggc 9061 agccgcgcca tctggtatat gtggctaggg gctagatttc tagagttcga agcccttgga 9121 ttcttgaacg aggatcactg gatggggaga gagaactcag gaggtggtgt tgaagggctg 9181 ggattacaaa gactcggata tgtcctagaa gagatgagtc gcataccagg aggaaggatg 9241 tatgcagatg acactgctgg ctgggatacc cgcatcagca ggtttgatct agagaatgaa 9301 gctctaatca ccaaccaaat ggagaaaggg cacagggcct tggcattggc cataatcaag 9361 tacacatacc aaaacaaagt ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt 9421 atggacatta tttcgagaca agaccaaagg gggagcggac aagttgtcac ttacgctctt 9481 aacacattta ccaacctagt ggtgcaactc attcggaata tggaggctga ggaagttcta 9541 gagatgcaag acttgtggct gctgcggagg tcagagaaag tgaccaactg gttgcagagc 9601 aacggatggg ataggctcaa acgaatggca gtcagtggag atgattgcgt tgtgaagcca 9661 attgatgata ggtttgcaca tgccctcagg ttcttgaatg atatgggaaa agttaggaag 9721 gacacacaag agtggaaacc ctcaactgga tgggacaact gggaagaagt tccgttttgc 9781 tcccaccact tcaacaagct ccatctcaag gacgggaggt ccattgtggt tccctgccgc 9841 caccaagatg aactgattgg ccgggcccgc gtctctccag gggcgggatg gagcatccgg 9901 gagactgctt gcctagcaaa atcatatgcg caaatgtggc agctccttta tttccacaga 9961 agggacctcc gactgatggc caatgccatt tgttcatctg tgccagttga ctgggttcca 10021 actgggagaa ctacctggtc aatccatgga aagggagaat ggatgaccat tgaagacatg 10081 cttgtggtgt ggaacagagt gtggattgag gagaacgacc acatggaaga caagacccca 10141 gttacgaaat ggacagacat tccctatttg ggaaaaaggg aagacttgtg gtgtggatct 10201 ctcatagggc acagaccgcg caccacctgg gctgagaaca ttaaaaacac agtcaacatg 10261 gtgcgcagga tcataggtga ggaagaaaag tacatggact acctatccac ccaagtccgc 10321 tacttgggtg aagaagggtc tacacctgga gtgctgtaag caccaatctt aatgttgtca 10381 ggcctgctag tcagccacag cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa 10441 gctgggaaac caagcctata gtcaggccga gaacgccatg gcacggaaga agccatgctg 10501 cctgtgagcc cctcagagga cactgagtca aaaaacccca cgcgcttgga ggcgcaggat 10561 gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg ggcctgaact ggagatcag

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014323.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX838905.2 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18511 18511 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18507 18507 100% 0.0 99% KX922703.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18494 18494 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX922704.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18487 18487 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18484 18484 100% 0.0 99% KY014324.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014300.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18444 18444 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18442 18442 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18438 18438 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014321.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18420 18420 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX838906.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18413 18413 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18404 18404 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18393 18393 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18348 18348 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18345 18345 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18345 18345 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18339 18339 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18330 18330 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18330 18330 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18330 18330 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18327 18327 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18327 18327 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18321 18321 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18321 18321 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18318 18318 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18318 18318 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18318 18318 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18318 18318 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18318 18318 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18312 18312 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18309 18309 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18309 18309 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18300 18300 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18300 18300 100% 0.0 99% KX156776.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18298 18298 100% 0.0 99% KY014297.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18296 18296 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156774.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18292 18292 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18291 18291 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18287 18287 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18285 18285 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18282 18282 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18282 18282 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18282 18282 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18276 18276 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18276 18276 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18273 18273 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18256 18256 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU740184.2

LOCUS KY014323 10646 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds. ACCESSION KY014323 VERSION KY014323.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05761899 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10646) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-02_MOS-1 Coverage :: 98x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10646 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS" /isolation_source="pool of 25 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="23-Aug-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08544.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..>10646 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatctttcc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagttatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggctgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac tggattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagatacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacgac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttcta ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgcta tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggacgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccccaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg 8821 gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gtcgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagtccg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactag

week conf discard untested total weekly increase 41 47 213 342 602 16 40 46 208 332 586 25 39 42 204 315 561 23 38 42 200 296 538 55 37 41 196 246 483 32 36 40 195 216 451 12 35 40 190 209 439 13 34 38 168 220 426 25 33 34 158 209 401 16 32 29 102 254 385 18 31 24 101 242 367 23 30 22 97 225 344 24 29 21 92 207 320 23 28 21 80 196 297 41 27 21 75 160 256 62 26 18 64 112 194 13 25 13 56 112 181 17 24 11 51 102 164 27 23 6 50 81 137 19 22 6 43 69 118 23 21 6 41 48 95 7 20 5 26 57 88 7 19 5 26 50 81 9 18 5 24 43 72 14 17 5 21 32 58 8 16 4 20 26 50 6 15 4 18 22 44 11

intensified surveillance of microcephaly and other birth defects CNS Review 21 October 2016 Among the epidemiological weeks 01 to 41 of 2016 have been confirmed forty-seven (47) cases of microcephaly associated the Zika virus, 213 cases were dismissed and 342 cases are in study. http://www.ins.gov.co/boletin-epidemiologico/Boletn Epidemiolgico/2016 Boletin epidemiologico semana 41.pdf

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014300.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18471 18471 100% 0.0 99% KY014304.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18465 18465 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18465 18465 100% 0.0 99% KU853012.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18462 18462 100% 0.0 99% KY014295.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18462 18462 100% 0.0 99% LC190723.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX842449.2 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18456 18456 100% 0.0 99% KY014321.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18453 18453 100% 0.0 99% KX673530.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18447 18447 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18446 18446 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922704.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18438 18438 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18438 18438 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014324.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18428 18428 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18417 18417 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18372 18372 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18366 18366 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18366 18366 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18363 18363 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447513.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18357 18357 100% 0.0 99% KX051563.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18354 18354 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18354 18354 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447511.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18354 18354 100% 0.0 99% KU527068.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18354 18354 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18348 18348 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447514.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18345 18345 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18339 18339 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18339 18339 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18339 18339 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18339 18339 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18336 18336 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18330 18330 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18330 18330 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18327 18327 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18321 18321 100% 0.0 99% KY014297.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18321 18321 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18321 18321 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18318 18318 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18318 18318 99% 0.0 99% KU497555.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18314 18314 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18312 18312 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18309 18309 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18309 18309 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18303 18303 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18303 18303 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18303 18303 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18303 18303 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18303 18303 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18303 18303 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18300 18300 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18300 18300 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18298 18298 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18294 18294 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18294 18294 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18285 18285 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18278 18278 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU740184.2

LOCUS KY014300 10659 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds. ACCESSION KY014300 VERSION KY014300.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05861584 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10659) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Park,D.J., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.12.0-51-g8588fdb Assembly Name :: DOM_2016_BB-0208_SER-1 Coverage :: 141x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10659 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Dominican Republic: Santo Domingo" /collection_date="20-Apr-2016" /collected_by="Hospital General de la Plaza de la Salud, Santo Domingo, Dominican Republic" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08521.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..10659 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtgagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gcgacctggc taagcttgca attttgatgg gcgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca acatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttctg ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctattc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg ctgcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccccaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg 8821 gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagttcg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gctcggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactagtggt tagaggaga

Pinellas update Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18516 18516 100% 0.0 100% KY014316.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18516 18516 100% 0.0 99% KX922707.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18458 18458 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18456 18456 100% 0.0 99% KU853012.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18444 18444 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014300.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18435 18435 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18431 18431 100% 0.0 99% KY014321.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18426 18426 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX842449.2 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18413 18413 100% 0.0 99% KY014323.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18413 18413 100% 0.0 99% KY014314.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18410 18410 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18408 18408 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18404 18404 100% 0.0 99% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18404 18404 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18399 18399 100% 0.0 99% KY014324.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18386 18386 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18381 18381 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18350 18350 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18345 18345 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18341 18341 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18341 18341 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18341 18341 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18336 18336 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18332 18332 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18327 18327 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18327 18327 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18327 18327 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18323 18323 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18323 18323 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18323 18323 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18318 18318 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18318 18318 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18314 18314 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18314 18314 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18314 18314 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18314 18314 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18314 18314 100% 0.0 99% KU926309.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18314 18314 100% 0.0 99% KU501217.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18309 18309 100% 0.0 99% KU940228.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU501216.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18305 18305 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18305 18305 100% 0.0 99% KX198135.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18305 18305 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18300 18300 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18296 18296 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18296 18296 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18296 18296 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18296 18296 100% 0.0 99% KX156776.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18294 18294 100% 0.0 99% KY014297.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18292 18292 99% 0.0 99% KU497555.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156774.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18289 18289 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18287 18287 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18287 18287 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18283 18283 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18282 18282 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18278 18278 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18278 18278 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18278 18278 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18278 18278 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18278 18278 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18278 18278 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18273 18273 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18273 18273 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18273 18273 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18273 18273 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18273 18273 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18269 18269 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18269 18269 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18260 18260 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18253 18253 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18251 18251 100% 0.0 99% KU740184.2

Pinellas LOCUS KY014316 10600 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds. ACCESSION KY014316 VERSION KY014316.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844994 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10600) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-039_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10600 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-039-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Florida" /collection_date="17-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..68 CDS 69..10340 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08537.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREXTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10341..>10600 ORIGIN 1 tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg aaacgagagt 61 ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc aatatgctaa 121 aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca gccggacttc 181 tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg agattcacgg 241 caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa aaagaggcta 301 tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata atcaatgcta 361 ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc ctcctgctga 421 ccacagctat ggcagcggag gtcactagac gtgggagtgc atactacatg tacttggaca 481 gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat aagtgttata 541 tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa tgccctatgc 601 tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg tcaacttggg 661 ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga agagctgtga 721 cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg ttggaatcaa 781 gagaayacac aaagcacttg attagagtcg aaaattggat attcaggaac cctggcttcg 841 cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa aaagtcatat 901 acttggtcat gatactgctg attgccccgg catacagcat caggtgcata ggagtcagca 961 atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc ttggaacatg 1021 gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag ctggttacaa 1081 caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca atatcagaca 1141 tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag caatcagaca 1201 ctcaatatgt ctgyaaaaga acgttagtgg acagaggctg gggaaatgga tgtggacttt 1261 ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa atgaccggga 1321 agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat ggctcccagc 1381 acagtgggat gatcgttaat gacacaggac atgaaactga tgagaataga gcgaaggttg 1441 agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga agcctaggac 1501 ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg actatgaata 1561 acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct tggcacgctg 1621 gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag ttcaaggacg 1681 cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca gttcacacgg 1741 cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg tcctctggcc 1801 acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca tactccttgt 1861 gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg acagtcacag 1921 tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag atggcggtgg 1981 acatgcaaac tctgacccca gttgggaggt tgataaccgc caaccccgta atcactgaaa 2041 gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac tcttacattg 2101 tcataggagt cggggagaag aagatcaccc accactggca caggagtggc agcaccattg 2161 gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg ggagacacag 2221 cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc atccatcaaa 2281 tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca caaatcctca 2341 ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt tccctcatgt 2401 gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct gatgtggggt 2461 gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc gtctataacg 2521 acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt agattggcag 2581 cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt tcaagaatgg 2641 aaaacatcat gtggagatca gtagaagggg agctcaatgc aatcctggaa gagaatggag 2701 ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt ccacagagat 2761 tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa tcgtacttcg 2821 ttagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg aaggaatgcc 2881 cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc ggggtatttc 2941 acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat ccagccgtta 3001 ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac tggattgaga 3061 gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg aaaacatgtg 3121 aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat ctgatcatac 3181 ccaagtcttt agctgggcca ctcagccacc acaataccag agagggctat aggacccaaa 3241 tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc ccaggcacta 3301 aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca accactgcaa 3361 gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca ctgtcgttcc 3421 gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa ccagaaagca 3481 acttagtaag gtcagtggtg actgcaggat caactgatca catggatcac ttctcccttg 3541 gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg accacaaaga 3601 tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga ttttcaatga 3661 gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg aacactggag 3721 gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg ttgctggtat 3781 ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc ttggcctcgt 3841 gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc atcaatggtt 3901 ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat aacatcacct 3961 tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg gcgtggagag 4021 caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa ggcagtgtga 4081 agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg gtcgacccca 4141 tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg ccccctagcg 4201 aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc aaggcagata 4261 tagagatggc tgggcccatg gccgcagtcg gtctgctaat tgtcagttac gtggtctcag 4321 gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa aaagatgcgg 4381 aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt gatttctccc 4441 tggtagagga tgacggtccc cccatgagag agatcatact caaggtggtc ctgatgacca 4501 tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac gtatacgtga 4561 agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa gtaaaaaagg 4621 gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt tcaacacaag 4681 ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc acaaaaggat 4741 ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc aagcaggatc 4801 tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac agcgaggtgc 4861 agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg cccggaatat 4921 ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca ggaacttcag 4981 gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat ggggtcgtga 5041 tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa gagactcctg 5101 ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta gacttgcatc 5161 ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagct ataaaaacaa 5221 gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg gaggaagccc 5281 ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccat tctggaacag 5341 aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag ccaatcagag 5401 tccccaacta taatctgtat attatggatg aggcccactt cacagatccc tcaagtatag 5461 cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc atcttcatga 5521 ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca attatggaca 5581 ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg acggatcact 5641 ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc gcagcttgtc 5701 tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag acagagttcc 5761 agaaaacaaa acatcaagag tgggactttg tcgtgacaac cgacatttca gagatgggcg 5821 ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg gtcatacttg 5881 atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc gctgcccaga 5941 ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg tatggaggtg 6001 ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg ctccttgaca 6061 atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc gacaaagtag 6121 cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt gtggaactca 6181 tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc ggaataactt 6241 acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg gaagacagtg 6301 tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg aggtggatgg 6361 acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt gccgctggga 6421 aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga cacatgacag 6481 agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag actggaagca 6541 ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt atgcttttgg 6601 ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac aagggcatag 6661 ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg tggctctcgg 6721 aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctactg ctggtggtgc 6781 tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca atcatcatca 6841 tggtagcagt aggtcttctg ggcttgatca ccgccaatga actcggatgg ttggagagaa 6901 caaagagtga cctaagccat ctaatgggaa ggagagagga gggagcaacc ataggattct 6961 caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc ttgacaactt 7021 tcatcacccc agccgtccaa catgcagtga ccacttcata caacaactac tccttaatgg 7081 cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca ttctacgcat 7141 gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca cccctgaccc 7201 taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca gggctgcagg 7261 cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag aaccctgttg 7321 tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa gtggagaaaa 7381 agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg tcgcggaccg 7441 cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact ttgtgggaag 7501 gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac atttttaggg 7561 gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct ggcttggtca 7621 agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc cgcttgaacc 7681 agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag gtgtgcagag 7741 aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct gtgtcccgag 7801 gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat ggaaaggtca 7861 ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc cgcaaagttc 7921 aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg ttggtgcaaa 7981 gctatgggtg gaacatagtc cgtctcaaga gtggggtgga cgtctttcat atggcggctg 8041 agccgtgtga cacgttgctg tgtgacatag gcgagtcatc atctagtcct gaagtcgaag 8101 aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa agaccaggag 8161 ccttytgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc ctggagcgac 8221 tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac tctacacatg 8281 agatgtactg ggtttctgga gcgaaaagca acaccataaa aagtgtgtcc accacgagcc 8341 agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag gaggatgtga 8401 atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac atgaagatca 8461 ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc tttgacgaga 8521 accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca caagggtcag 8581 catcctctct agtaaacggg gttgtcaggc tcctgtcaaa accctgggat gtggtgactg 8641 gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga gttttcaagg 8701 aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt atgagcatgg 8761 tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc tgtaccaaag 8821 aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt gaagaggaaa 8881 aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct ctagtggaca 8941 aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac atgatgggaa 9001 aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc atctggtata 9061 tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac gaggatcact 9121 ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa agactcggat 9181 atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat gacactgctg 9241 gctgggatac ccgcatcagc aggtttgatc tagagaatga agctctaatc accaaccaaa 9301 tggagaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac caaaacaaag 9361 tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt atttcgagac 9421 aagaccaaag ggggagcgga caagtcgtca cttacgctct taacacattt accaacctag 9481 tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa gacttgtggc 9541 tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg gataggctca 9601 aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat aggtttgcac 9661 atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa gagtggaaac 9721 cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac ttcaacaagc 9781 tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat gaactgattg 9841 gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct tgcctagcaa 9901 aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc cgactgatgg 9961 ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga actacctggt 10021 caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg tggaacagag 10081 tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa tggacagaca 10141 ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg cacagaccgc 10201 gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg atcataggtg 10261 aggaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt gaagaagggt 10321 ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggcctgcta gtcagccaca 10381 gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa ccaagcctat 10441 agtcaggccg agaacgccat ggcacggaag aagccatgct gcctgtgagc ccctcagagg 10501 acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga aggtggcgac 10561 cttccccacc cttcaatctg gggcctgaac tggagatcag

Update Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 18525 18525 100% 0.0 100% KY014324.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18520 18520 100% 0.0 99% KX838904.2 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 18498 18498 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX842449.2 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 18484 18484 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18482 18482 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX922704.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014304.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 18435 18435 100% 0.0 99% KY014300.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18429 18429 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18429 18429 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18426 18426 100% 0.0 99% LC190723.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 18420 18420 100% 0.0 99% KY014321.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18408 18408 100% 0.0 99% KX673530.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014322.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 18402 18402 100% 0.0 99% KY014314.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838906.2 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 18399 18399 100% 0.0 99% KY014316.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 18381 18381 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18336 18336 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18330 18330 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18330 18330 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18327 18327 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18318 18318 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18318 18318 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18318 18318 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18312 18312 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18312 18312 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18309 18309 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18309 18309 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18303 18303 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18303 18303 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18303 18303 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18303 18303 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18303 18303 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18300 18300 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18294 18294 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18294 18294 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365780.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 18291 18291 100% 0.0 99% KY014303.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365777.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 18285 18285 100% 0.0 99% KY014297.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18285 18285 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18282 18282 99% 0.0 99% KU497555.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 18278 18278 100% 0.0 99% KY014327.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18276 18276 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18276 18276 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU312312.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 18273 18273 100% 0.0 99% KY014315.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18273 18273 100% 0.0 99% KU922960.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 18267 18267 100% 0.0 99% KY014296.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18267 18267 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18267 18267 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18267 18267 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18267 18267 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18267 18267 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18264 18264 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18264 18264 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18262 18262 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18258 18258 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18258 18258 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18249 18249 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18242 18242 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU740184.2

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18520 18520 100% 0.0 99% KX838904.2 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18498 18498 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18484 18484 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18482 18482 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX922704.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18429 18429 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18429 18429 100% 0.0 99% KU853012.1 Select seq dbj|LC190723.1| Zika virus gnomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18426 18426 100% 0.0 99% LC190723.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18408 18408 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18392 18392 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18336 18336 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18330 18330 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18330 18330 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18327 18327 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18318 18318 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18318 18318 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18318 18318 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18312 18312 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18312 18312 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18309 18309 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18309 18309 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18303 18303 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18303 18303 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18303 18303 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18303 18303 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18303 18303 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18300 18300 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18294 18294 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18294 18294 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18285 18285 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18282 18282 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18276 18276 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18276 18276 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18273 18273 100% 0.0 99% KU922960.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18267 18267 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18267 18267 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18267 18267 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18267 18267 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18267 18267 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18264 18264 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18264 18264 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18262 18262 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18258 18258 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18258 18258 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18249 18249 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18242 18242 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18236 18236 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18222 18222 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18222 18222 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18222 18222 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18218 18218 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18218 18218 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18204 18204 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18092 18092 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18069 18069 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18056 18056 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18002 18002 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17879 17879 100% 0.0 99% KX694532.1

LOCUS KY014324 10659 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds. ACCESSION KY014324 VERSION KY014324.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05761900 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10659) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Isern,S., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Paul,L., Porcelli,M., Qu,J., Sabeti,P.C., Tomkins-Tinch,C.H., Vasquez,C., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-01_MOS-1 Coverage :: 479x Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10659 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS" /isolation_source="pool of 39 female mosquitos" /host="Aedes aegypti" /db_xref="taxon:64320" /country="USA: Miami, FL" /collection_date="22-Aug-2016" /collected_by="Miami-Dade Mosquito Control" 5'UTR <1..88 CDS 89..10360 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08545.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGKREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" 3'UTR 10361..10659 ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactacatg tacttggaca gaaacgatgc tggggaggcc atatctttcc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtagaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagttatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggctgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac tggattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 caaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagatacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaatcctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tccctcatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaatgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg ttagagcagc aaagacaaat aacagctttg tcgtggatgg 2881 tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga 2941 tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt 3001 agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga 3061 tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct 3121 gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga 3181 agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag 3241 agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt 3301 tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc 3361 tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac 3421 aatgccccca ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc 3481 caggaaagaa ccagaaagca acttagtaag gtcagtggtg actgcaggat caactgatca 3541 catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa 3601 gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat 3661 cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt 3721 cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt 3781 cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat 3841 gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct 3901 gatggttctc atcaatgggt ttgctttggc ctggttggca atacgagcga tggttgttcc 3961 acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac 4021 actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct 4081 gaagggaaaa ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc 4141 tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa 4201 gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg 4261 agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat 4321 tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat 4381 cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga 4441 tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact 4501 caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg 4561 agcgtggtac gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc 4621 tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag 4681 actgctaggt tcaacacagg ttggagtggg agttatgcaa gagggggtct ttcacactat 4741 gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg 4801 gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg 4861 ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat 4921 ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga 4981 ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact 5041 ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag 5101 gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct 5161 aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt 5221 ccgtgaagct ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc 5281 tgctgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa 5341 tgtcacccat tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg 5401 tctactacag ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt 5461 cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga 5521 ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc 5581 caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt 5641 tgattgggtg acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg 5701 caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa 5761 gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac 5821 cgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg 5881 cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac 5941 acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga 6001 tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga 6061 agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg 6121 acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag 6181 gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt 6241 tgcatctgcc ggaataactt acacagatag aagatggtgc tttgatggca cgaccaacaa 6301 caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt 6361 gctcaaaccg aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt 6421 caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac 6481 actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat 6541 gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct 6601 agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt 6661 gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc 6721 atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt 6781 gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa 6841 ccaaatggca atcatcatca tggtagcagt aggtcttcta ggcttgatca ccgccaatga 6901 actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa agagagagga 6961 gggagcaacc ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat 7021 ctatgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata 7081 caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa 7141 agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc 7201 acaattaaca cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta 7261 cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg 7321 catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat 7381 tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag 7441 cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc 7501 aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc 7561 actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac 7621 aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa 7681 atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg 7741 catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg 7801 aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct 7861 gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc 7921 cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga 7981 agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc cgtctcaaga gtggggtgga 8041 cgtctttcat atggcggctg agccgtgtga cacgttgcta tgtgacatag gtgagtcatc 8101 atctagtcct gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg 8161 gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat 8221 gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact 8281 ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa 8341 aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt 8401 gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga 8461 agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga 8521 aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga 8581 ggcccccaca caagggtcag catcctctct agtaaacggg gttgtcaggc tcctgtcaaa 8641 accctgggat gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg 8701 tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac 8761 tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggta aacacaaacg 8821 gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg 8881 ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag 8941 gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg 9001 tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg 9061 cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg 9121 attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct 9181 gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat 9241 gtatgcagat gacactgctg gctgggatac ccgcatcagc aggtttgatc tagagaatga 9301 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa 9361 gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt 9421 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct 9481 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct 9541 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag 9601 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc 9661 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa 9721 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttctg 9781 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg 9841 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg 9901 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag 9961 aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc 10021 aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca ttgaagacat 10081 gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc 10141 agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc 10201 tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat 10261 ggtgcgcagg atcataggtg aggaagaaaa gtacatggac tacctatcca cccaagtccg 10321 ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc 10381 aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga 10441 agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct 10501 gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga 10561 tgggaaaaga aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag 10621 ctgtggatct ccagaagagg gactagtggt tagaggaga

Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 10,659 bp linear RNA Accession: KY014300.1 GI: 1087986131 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0216-SER polyprotein gene, complete cds 10,466 bp linear RNA Accession: KY014302.1 GI: 1087986135 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 10,658 bp linear RNA Accession: KY014303.1 GI: 1087986143 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 10,659 bp linear RNA Accession: KY014304.1 GI: 1087986146 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0076-SER polyprotein gene, complete cds 10,346 bp linear RNA Accession: KY014305.1 GI: 1087986151 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 10,601 bp linear RNA Accession: KY014314.1 GI: 1087986175 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0269-SER polyprotein gene, partial cds 10,341 bp linear RNA Accession: KY014318.1 GI: 1087986185 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 10,643 bp linear RNA Accession: KY014321.1 GI: 1087986191 GenBankFASTAGraphics

The Broad Institute has release full Santo Domingo Zika sequences.

Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 10,659 bp linear RNA Accession: KY014324.1 GI: 1087986200 GenBankFASTAGraphics Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 10,646 bp linear RNA Accession: KY014323.1 GI: 1087986198 GenBankFASTAGraphics Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 10,659 bp linear RNA Accession: KY014322.1 GI: 1087986193 GenBankFASTAGraphics Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 10,651 bp linear RNA Accession: KY014299.1 GI: 1087986128 GenBankFASTAGraphics

The Broad Institute has release a set for full Florida mosquito sequences,

Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 10,619 bp linear RNA Accession: KY014295.1 GI: 1087986118 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 10,364 bp linear RNA Accession: KY014298.1 GI: 1087986126 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 10,600 bp linear RNA Accession: KY014316.1 GI: 1087986181 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 10,598 bp linear RNA Accession: KY014325.1 GI: 1087986202 GenBankFASTAGraphics Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds 10,365 bp linear RNA Accession: KY014326.1 GI: 1087986204 GenBankFASTAGraphics

Full Florida Zika sequences have been released by The Broad Institute.

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