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Zika Virus – October 26, 2016 Texas has had 234 reported cases of illness due to Zika virus. All the cases were associated with travel to an area where Zika is being spread. This count includes 14 pregnant women, two infants infected before birth, and two people who had sexual contact with travelers. Texas Zika Cases by County: County Cases Angelina 1 Bell 6 Bexar 17 Brazoria 1 Brazos 3 Burnet 1 Cameron 3 Collin 5 Dallas 40 Denton 9 El Paso 3 Ellis 1 Fort Bend 9 Frio 1 Galveston 7 Gray 1 Grayson 1 Gregg 1 Hamilton 1 Harris 64 Jackson 1 Jefferson 2 Jones 1 Lee 1 Lubbock 1 Matagorda 1 Medina 1 Midland 1 Montgomery 1 Palo Pinto 1 Parker 1 Randall 1 Rusk 1 Tarrant 23 Travis 10 Upshur 1 Val Verde 1 Walker 1 Williamson 5 Webb 3 Wise 1 Total 234 Note: Zika case data for Texas will be updated each weekday no later than 11 a.m.

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Zika Virus Update: Last Update: Daily (5 pm EST) Total Human Cases Related to International Travel: 28 Locally Acquired Mosquito Borne Cases: 0 http://doh.dc.gov/publication/zika-virus-information

Zika Virus Update: Last Update: Daily (5 pm EST) Total Human Cases Related to International Travel: 28 Locally Acquired Mosquito Borne Cases: 0

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At A Glance - Zika Virus in Arkansas (as of October 25, 2016) Travel-associated Zika virus disease cases reported: 15* As directed by CDC, our Zika case counts provisionally include persons who test indeterminately. Locally acquired cases reported: 0 http://www.healthy.arkansas.gov/programsServices/infectiousDisease/zoonoticDisease/zika/Pages/default.aspx

At A Glance - Zika Virus in Arkansas (as of October 25, 2016) Travel-associated Zika virus disease cases reported: 15* As directed by CDC, our Zika case counts provisionally include persons who test indeterminately. Locally acquired cases reported: 0

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Has Zika virus been detected in Canada? As of October 20, 2016, 344 travel-related cases, 2 sexually transmitted cases and 2 reports of maternal-to-fetal transmission have been detected in Canada. There's ongoing low risk to Canadians travelling to countries or areas in the U.S. with reported mosquito-borne Zika virus. The data will be updated every 2 weeks on Thursdays. The next update will be made on Thursday, November 3, 2016. Zika virus detected in Canada, as of October 20, 2016 Country Acquired through sexual transmission Maternal-to-fetal transmission Travel-related Canada 2 2 344 http://www.healthycanadians.gc.ca/diseases-conditions-maladies-affections/disease-maladie/zika-virus/surveillance-eng.php?id=zikacases#s1

Has Zika virus been detected in Canada? As of October 20, 2016, 344 travel-related cases, 2 sexually transmitted cases and 2 reports of maternal-to-fetal transmission have been detected in Canada. There's ongoing low risk to Canadians travelling to countries or areas in the U.S. with reported mosquito-borne Zika virus. The data will be updated every 2 weeks on Thursdays. The next update will be made on Thursday, November 3, 2016. Zika virus detected in Canada, as of October 20, 2016 Country Acquired through sexual transmission Maternal-to-fetal transmission Travel-related Canada 2 2 344 Reports of pregnancies and maternal-to-fetal transmission Number of pregnancies reported among Zika-infected women Maternal-to-fetal transmission No Zika-related anomalies observed Zika-related anomalies observed 15 1 1 The number of reported Zika-related pregnancies may not reflect all pregnancies among Zika-positive women in Canada.

Reported Cases Zika Virus – October 25, 2016 Texas has had 233 reported cases of illness due to Zika virus. All the cases were associated with travel to an area where Zika is being spread. This count includes 14 pregnant women, two infants infected before birth, and two people who had sexual contact with travelers. Texas Zika Cases by County: County Cases Angelina 1 Bell 6 Bexar 17 Brazoria 1 Brazos 3 Burnet 1 Cameron 3 Collin 5 Dallas 39 Denton 9 El Paso 3 Ellis 1 Fort Bend 9 Frio 1 Galveston 7 Gray 1 Grayson 1 Gregg 1 Hamilton 1 Harris 64 Jackson 1 Jefferson 2 Jones 1 Lee 1 Lubbock 1 Matagorda 1 Medina 1 Midland 1 Montgomery 1 Palo Pinto 1 Parker 1 Randall 1 Rusk 1 Tarrant 23 Travis 10 Upshur 1 Val Verde 1 Walker 1 Williamson 5 Webb 3 Wise 1 Total 233 Note: Zika case data for Texas will be updated each weekday no later than 11 a.m.

ACTIVE INVESTIGATIONS Information on Active Investigations When a local case of Zika virus is confirmed through laboratory testing, the department conducts a thorough investigation around the case to determine if additional people are infected. The department interviews and tests close contacts and community members around the case. Knowing if additional people are infected helps the department determine if there is a zone where mosquitoes are transmitting the virus. Not every case results in a designation of active transmission in an area. In some instances, a case of Zika is an isolated incident with no additional people infected. For more information on the department’s testing and investigation process, click here. paragraph break Current Number of Active Investigations: 11 Miami-Dade County: 7 open investigations Palm Beach: 1 open investigations Unknown: 3 open investigations *Note: Exposure occurred in Miami Beach and overseas in an area with widespread transmission of Zika. paragraph break Current Number of Closed Investigations: 33 Miami-Dade County: 26 closed investigations Palm Beach County: 5 closed investigation Broward County: 1 closed investigation Pinellas: 1 closed investigation paragraph break Sampling Activities For Active Investigations Miami Beach in Miami-Dade County (Area of Active Transmission) Total # of Samples Collected Positive Negative Pending Results 1,063 71 992 0 paragraph break One-square mile area within NW 79th St. to the North, NW 63rd St. to the South, NW 10th Ave. to the West and N. Miami Ave. to the East in Miami-Dade County (Area of Active Transmission) Total # of Samples Collected Positive Negative Pending Results 108 7 94 7 paragraph break Palm Beach County – 1 Investigation Total # of Samples Collected Positive Negative Pending Results 0 0 0 0 paragraph break Miami-Dade Investigations Outside of Areas of Active Transmission– 6 Investigations Total # of Samples Collected Positive Negative Pending Results 29 0 29 0 paragraph break Wynwood Area in Miami-Dade County – Note: This investigation is closed, but the department is providing the sampling results below for reference. Total # of Samples Collected Positive Negative Pending Results 525 33 491 0 Data as of Oct. 25, 2016 - 4:16 PM ET

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October 25, 2016 Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a Zika case count by county and information to keep Floridians informed and prepared. In order to keep the public informed, the department has posted our investigation process here. There are four new travel related cases today with one in Miami-Dade, one in Orange, one in Volusia and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There are two new non-travel related cases today – one is associated with the Miami Beach investigation and the other is a Miami-Dade County resident and the department is investigating where exposure occured. DOH continues door-to-door outreach and targeted testing in Miami-Dade County and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH believes ongoing transmission is only taking place within the identified areas in Miami-Dade County. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. For a complete breakdown of non-travel and travel-related Zika infections to-date, please see below. Infection Type Infection Count Travel-Related Infections of Zika 755 Non-Travel Related Infections of Zika 171 Infections Involving Pregnant Women 114 Out of State Cases (not Florida Residents) 19 Undetermined 5 Total 1,064 The timelines below are as of Oct. 21 and will be updated every Friday. Note: Asymptomatic cases are not reflected as they do not have symptom on-set dates. click image above to enlarge click image above to enlarge click image above to enlarge The department is currently conducting 11 active investigations. The department has closed 33 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 9,470 people statewide. Florida currently has the capacity to test 8,524 people for active Zika virus and 6,524 for Zika antibodies. At Governor Scott’s direction, all county health departments offer free Zika risk assessment and testing to pregnant women. Florida’s small case clusters is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted areas in Miami-Dade County (see maps below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 114. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted more than 6,864 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. click image above to enlarge click image above to enlarge About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote, and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov.

October 25, 2016 Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a Zika case count by county and information to keep Floridians informed and prepared. In order to keep the public informed, the department has posted our investigation process here. There are four new travel related cases today with one in Miami-Dade, one in Orange, one in Volusia and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There are two new non-travel related cases today – one is associated with the Miami Beach investigation and the other is a Miami-Dade County resident and the department is investigating where exposure occured. DOH continues door-to-door outreach and targeted testing in Miami-Dade County and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH believes ongoing transmission is only taking place within the identified areas in Miami-Dade County. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. For a complete breakdown of non-travel and travel-related Zika infections to-date, please see below. Infection Type Infection Count Travel-Related Infections of Zika 755 Non-Travel Related Infections of Zika 171 Infections Involving Pregnant Women 114 Out of State Cases (not Florida Residents) 19 Undetermined 5 Total 1,064 The timelines below are as of Oct. 21 and will be updated every Friday. Note: Asymptomatic cases are not reflected as they do not have symptom on-set dates. click image above to enlarge click image above to enlarge click image above to enlarge The department is currently conducting 11 active investigations. The department has closed 33 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 9,470 people statewide. Florida currently has the capacity to test 8,524 people for active Zika virus and 6,524 for Zika antibodies. At Governor Scott’s direction, all county health departments offer free Zika risk assessment and testing to pregnant women. Florida’s small case clusters is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted areas in Miami-Dade County (see maps below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 114. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted more than 6,864 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. click image above to enlarge click image above to enlarge About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote, and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov.

There are two new non-travel related cases today – one is associated with the Miami Beach investigation and the other is a Miami-Dade County resident and the department is investigating where exposure occured.

There are four new travel related cases today with one in Miami-Dade, one in Orange, one in Volusia and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There are two new non-travel related cases today – one is associated with the Miami Beach investigation and the other is a Miami-Dade County resident and the department is investigating where exposure occured.

nfection Type Infection Count Travel-Related Infections of Zika 755 Non-Travel Related Infections of Zika 171 Infections Involving Pregnant Women 114 Out of State Cases (not Florida Residents) 19 Undetermined 5 Total 1,064 http://www.floridahealth.gov/newsroom/2016/10/102516-zika-update.html

http://www.floridahealth.gov/newsroom/2016/10/102516-zika-update.html nfection Type Infection Count Travel-Related Infections of Zika 755 Non-Travel Related Infections of Zika 171 Infections Involving Pregnant Women 114 Out of State Cases (not Florida Residents) 19 Undetermined 5 Total 1,064

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014326.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds 7772 8555 97% 0.0 100% KY014326.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 7772 8555 97% 0.0 100% KY014323.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 7772 8555 97% 0.0 100% KY014295.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 7772 8555 97% 0.0 100% KX922704.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 7772 8555 97% 0.0 100% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 7772 8555 97% 0.0 100% KX838905.2 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 7768 8551 97% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 7766 8550 97% 0.0 99% KX922703.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 7766 8550 97% 0.0 99% KX832731.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 7764 8548 97% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 7762 8546 97% 0.0 99% KY014324.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 7744 8528 97% 0.0 99% KY014304.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 7744 8528 97% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 7741 8524 97% 0.0 99% KU853012.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 7739 8522 97% 0.0 99% KY014300.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 7735 8519 97% 0.0 99% KY014321.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 7735 8519 97% 0.0 99% LC190723.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 7735 8519 97% 0.0 99% KX922707.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 7735 8519 97% 0.0 99% KX922705.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 7730 8513 97% 0.0 99% KY014322.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 7730 8513 97% 0.0 99% KY014316.1 Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 7730 8513 97% 0.0 99% KY014298.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 7730 8513 97% 0.0 99% KX838906.2 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 7730 8513 97% 0.0 99% KX673530.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 7726 8510 97% 0.0 99% KY014299.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 7726 8510 97% 0.0 99% KX922708.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 7721 8504 97% 0.0 99% KY014314.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 7721 8495 97% 0.0 99% KX447510.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 7717 8501 97% 0.0 99% KX447518.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 7717 8501 97% 0.0 99% KX280026.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 7717 8495 97% 0.0 99% KU729218.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 7712 8495 97% 0.0 99% KX879604.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 7712 8490 97% 0.0 99% KU509998.3 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 7712 8490 97% 0.0 99% KU926310.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 7708 8492 97% 0.0 99% KX879603.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 7708 8492 97% 0.0 99% KX447513.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 7708 8483 97% 0.0 99% KU321639.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 7703 8486 97% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 7703 8486 97% 0.0 99% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 7703 8486 97% 0.0 99% KJ776791.2 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 7703 8486 97% 0.0 99% KX447521.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 7703 8481 97% 0.0 99% KX447515.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 7703 8486 97% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 7703 8486 97% 0.0 99% KX447509.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 7703 8486 97% 0.0 99% KX369547.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 7703 8486 97% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 7703 8477 97% 0.0 99% KX197192.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 7703 8486 97% 0.0 99% KU940228.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 7703 8486 97% 0.0 99% KU729217.2 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 7703 8486 97% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 7703 8486 97% 0.0 99% KU365779.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 7699 8483 97% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 7699 8483 97% 0.0 99% KU365777.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 7698 8476 97% 0.0 99% KY014309.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 7694 8472 97% 0.0 99% KX447520.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 7694 8477 97% 0.0 99% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 7694 8477 97% 0.0 99% KX447511.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 7694 8477 97% 0.0 99% KX051563.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 7694 8477 97% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 7694 8477 97% 0.0 99% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 7694 8472 97% 0.0 99% KU365778.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 7692 8476 97% 0.0 99% KY014297.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 7692 8393 96% 0.0 99% KU940224.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 7690 8474 97% 0.0 99% KY014317.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 7690 8468 97% 0.0 99% KX806557.2 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 7690 8474 97% 0.0 99% KX694534.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 7690 8474 97% 0.0 99% KX447516.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 7690 8474 97% 0.0 99% KX247632.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 7690 8474 97% 0.0 99% KU991811.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 7690 8468 97% 0.0 99% KU527068.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 7689 8468 97% 0.0 99% KY014307.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 7687 8465 97% 0.0 99% KY014315.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 7687 8470 97% 0.0 99% KY014306.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 7685 8468 97% 0.0 99% KY014327.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 7685 8468 97% 0.0 99% KX520666.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 7685 8468 97% 0.0 99% KU758877.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 7685 8468 97% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 7685 8459 97% 0.0 99% KU497555.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 7685 8463 97% 0.0 99% KU501215.1 Select seq gb|KY014319.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME38-PLA polyprotein gene, complete cds 7681 8306 97% 0.0 99% KY014319.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 7681 8465 97% 0.0 99% KX856011.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 7681 8459 97% 0.0 99% KX601168.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 7681 8465 97% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 7681 8459 97% 0.0 99% KX377337.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 7681 8459 97% 0.0 99% KX087101.2 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 7681 8456 97% 0.0 99% KX198135.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 7681 8459 97% 0.0 99% KU870645.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 7681 8459 97% 0.0 99% KU312312.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 7678 8461 97% 0.0 99% KY014310.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 7676 8454 97% 0.0 99% KY014303.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 7676 8449 97% 0.0 99% KX447517.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 7676 8459 97% 0.0 99% KX446950.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 7676 8459 97% 0.0 99% KU937936.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 7676 8459 97% 0.0 99% KU955590.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 7672 8456 97% 0.0 99% KX766029.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 7672 8447 97% 0.0 99% KX117076.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 7672 8456 97% 0.0 99% KX056898.1 Select seq gb|KY014320.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds 7667 8411 97% 0.0 99% KY014320.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 7667 8450 97% 0.0 99% KY014296.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 7667 8441 97% 0.0 99% KX253996.1

LOCUS KY014326 10365 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds. ACCESSION KY014326 VERSION KY014326.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844993 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10365) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-038_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10365 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-038-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Dade County, FL" /collection_date="05-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..69 CDS 70..10341 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08547.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGXXXXXXXXXXXXXXXXXXXXXXXXNKCYIQI MDLGHMCDXXXXXXXXXXXXXXXXXXXDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" gap 4939..5434 /estimated_length=496 gap 7942..8139 /estimated_length=198 gap 9160..9940 /estimated_length=781 3'UTR 10342..>10365 ORIGIN 1 gtttgaagcg aaagctagca acagtatcaa caggttttat tttggatttg gaaacgagag 61 tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat tccggattgt caatatgcta 121 aaacgcggag tagcccgtgt gagccccttt gggggcttga agaggctgcc agccggactt 181 ctgctgggtc atgggcccat caggatggtc ttggcgattc tagccttttt gagattcacg 241 gcaatcaagc catcactggg tctcatcaat agatggggtt cagtggggaa aaaagaggct 301 atggaaataa taaagaagtt caagaaagat ctggctgcca tgctgagaat aatcaatgct 361 aggaaggaga agaagagacg aggcgcagat actagtgtcg gaattgttgg cctcctgctg 421 accacagcta tggcagcgga ggtcactaga cgtgggannn nnnnnnnnnn nnnnnnnnnn 481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa taagtgttat 541 atacagatca tggatcttgg acacatgtgt gatnnnnnnn nnnnnnnnnn nnnnnnnnnn 601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc gattgttggt gcaacacgac gtcaacttgg 661 gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac ggagatctag aagagctgtg 721 acgctcccct cccattccac taggaagctg caaacgcggt cgcaaacctg gttggaatca 781 agagaataca caaagcactt gattagagtc gaaaattgga tattcaggaa ccctggcttc 841 gcgttagcag cagctgccat cgcttggctt ttgggaagct caacgagcca aaaagttata 901 tacttggtca tgatactgct gattgccccg gcatacagca tcaggtgcat aggagtcagc 961 aatagggact ttgtggaagg tatgtcaggt gggacttggg ttgatgttgt cttggaacat 1021 ggaggctgtg tcaccgtaat ggcacaggac aaaccgactg tcgacataga gctggttaca 1081 acaacagtca gcaacatggc ggaggtaaga tcctactgct atgaggcatc aatatcagac 1141 atggcttcgg acagccgctg cccaacacaa ggtgaagcct accttgacaa gcaatcagac 1201 actcaatatg tctgcaaaag aacgttagtg gacagaggct ggggaaatgg atgtggactt 1261 tttggcaaag ggagcctggt gacatgcgct aagtttgcat gctccaagaa aatgaccggg 1321 aagagcatcc agccagagaa tctggagtac cggataatgc tgtcagttca tggctcccag 1381 cacagtggga tgatcgttaa tgacacagga catgaaactg atgagaatag agcgaaggtt 1441 gagataacgc ccaattcacc aagagccgaa gccaccctgg ggggttttgg aagcctagga 1501 ctggattgtg aaccgaggac aggccttgac ttttcagatt tgtattactt gactatgaat 1561 aacaagcact ggttggttca caaggagtgg ttccacgaca ttccattacc ttggcacgct 1621 ggggcagaca ccggaactcc acactggaac aacaaagaag cactggtaga gttcaaggac 1681 gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc aagaaggagc agttcacacg 1741 gcccttgctg gagctctgga ggctgagatg gatggtgcaa agggaaggct gtcctctggc 1801 cacttgaaat gtcgcctgaa aatggataaa cttagattga agggcgtgtc atactccttg 1861 tgtaccgcag cgttcacatt caccaagatc ccggctgaaa cactgcacgg gacagtcaca 1921 gtggaggtac agtacgcagg gacagatgga ccttgcaagg ttccagctca gatggcggtg 1981 gacatgcaaa ctctgacccc agttgggagg ttgataaccg ccaaccccgt aatcactgaa 2041 agcactgaga actctaagat gatgctggaa cttgatccac catttgggga ctcttacatt 2101 gtcataggag tcggggagaa gaagatcacc caccactggc acaggagtgg cagcaccatt 2161 ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa tggcagtctt gggagataca 2221 gcctgggact ttggatcagt tggaggcgct ctcaactcat tgggcaaggg catccatcaa 2281 atttttggag cagctttcaa atcattgttt ggaggaatgt cctggttctc acaaatcctc 2341 attggaacgt tgctgatgtg gttgggtctg aacacaaaga atggatctat ttccctcatg 2401 tgcttggcct tagggggagt gttgatcttc ttatccacag ccgtctctgc tgatgtgggg 2461 tgctcggtgg acttctcaaa gaaggagacg agatgcggta caggggtgtt cgtctataac 2521 gacgttgaag cctggaggga caggtacaag taccatcctg actccccccg tagattggca 2581 gcagcagtca agcaagcctg ggaagatggt atctgcggga tctcctctgt ttcaagaatg 2641 gaaaacatca tgtggagatc agtagaaggg gagctcaatg caatcctgga agagaatgga 2701 gttcaactga cggtcgttgt gggatctgta aaaaacccca tgtggagagg tccacagaga 2761 ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg cttgggggaa atcgtacttc 2821 gttagagcag caaagacaaa taacagcttt gtcgtggatg gtgacacact gaaggaatgc 2881 ccactcaaac atagagcatg gaacagcttt cttgtggagg atcatgggtt cggggtattt 2941 cacactagtg tctggctcaa ggttagagaa gattattcat tagagtgtga tccagccgtt 3001 attggaacag ctgttaaggg aaaggaggct gtacacagtg atctaggcta ctggattgag 3061 agtgagaaga atgacacatg gaggctgaag agggcccatc tgatcgagat gaaaacatgt 3121 gaatggccaa agtcccacac attgtggaca gatggaatag aagagagtga tctgatcata 3181 cccaagtctt tagctgggcc actcagccat cacaatacca gagagggcta caggacccaa 3241 atgaaagggc catggcacag tgaagagctt gaaattcggt ttgaggaatg cccaggcact 3301 aaggtccacg tggaggaaac atgtggaaca agaggaccat ctctgagatc aaccactgca 3361 agcggaaggg tgatcgagga atggtgctgc agggagtgca caatgccccc actgtcgttc 3421 cgggctaaag atggctgttg gtatggaatg gagataaggc ccaggaaaga accagaaagc 3481 aacttagtaa ggtcagtggt gactgcagga tcaactgatc acatggatca cttctccctt 3541 ggagtgcttg tgattctgct catggtgcag gaagggctga agaagagaat gaccacaaag 3601 atcatcataa gcacatcaat ggcagtgctg gtagctatga tcctgggagg attttcaatg 3661 agtgacctgg ctaagcttgc aattttgatg ggtgccacct tcgcggaaat gaacactgga 3721 ggagatgtag ctcatctggc gctgatagcg gcattcaaag tcagaccagc gttgctggta 3781 tctttcatct tcagagctaa ttggacaccc cgtgaaagca tgctgctggc cttggcctcg 3841 tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc tgatggttct catcaatggt 3901 tttgctttgg cctggttggc aatacgagcg atggttgttc cacgcactga taacatcacc 3961 ttggcaatcc tggctgctct gacaccactg gcccggggca cactgcttgt ggcgtggaga 4021 gcaggccttg ctacttgcgg ggggtttatg ctcctctctc tgaagggaaa aggcagtgtg 4081 aagaagaact taccatttgt catggccctg ggactaaccg ctgtgaggct ggtcgacccc 4141 atcaacgtgg tgggactgct gttgctcaca aggagtggga agcggagctg gccccctagc 4201 gaagtactca cagctgttgg cctgatatgc gcattggctg gagggttcgc caaggcagat 4261 atagagatgg ctgggcccat ggccgcggtc ggtctgctaa ttgtcagtta cgtggtctca 4321 ggaaagagtg tggacatgta cattgaaaga gcaggtgaca tcacatggga aaaagatgcg 4381 gaagtcactg gaaacagtcc ccggctcgat gtggcgctag atgagagtgg tgatttctcc 4441 ctggtggagg atgacggtcc ccccatgaga gagatcatac tcaaggtggt cctgatgacc 4501 atctgtggca tgaacccaat agccataccc tttgcagctg gagcgtggta cgtatacgtg 4561 aagactggaa aaaggagtgg tgctctatgg gatgtgcctg ctcccaagga agtaaaaaag 4621 ggggagacca cagatggagt gtacagagta atgactcgta gactgctagg ttcaacacaa 4681 gttggagtgg gagttatgca agagggggtc tttcacacta tgtggcacgt cacaaaagga 4741 tccgcgctga gaagcggtga agggagactt gatccatact ggggagatgt caagcaggat 4801 ctggtgtcat actgtggtcc atggaagcta gatgccgcct gggacgggca cagcgaggtg 4861 cagctcttgg ccgtgccccc cggagagaga gcgaggaaca tccagactct gcccggaata 4921 tttaagacaa aggatggg [gap 496 bp] Expand Ns 5435 cccact tcacagatcc ctcaagtata 5461 gcagcaagag gatacatttc aacaagggtt gagatgggcg aggcggctgc catcttcatg 5521 accgccacgc caccaggaac ccgtgacgca tttccggact ccaactcacc aattatggac 5581 accgaagtgg aagtcccaga gagagcctgg agctcaggct ttgattgggt gacggatcat 5641 tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg gcaatgagat cgcagcttgt 5701 ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa agacttttga gacagagttc 5761 cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa ccgacatttc agagatgggc 5821 gccaacttta aagctgaccg tgtcatagat tccaggagat gcctaaagcc ggtcatactt 5881 gatggcgaga gagtcattct ggctggaccc atgcctgtca cacatgccag cgctgcccag 5941 aggagggggc gcataggcag gaatcccaac aaacctggag atgagtatct gtatggaggt 6001 gggtgcgcag agactgacga agaccatgca cactggcttg aagcaagaat gctccttgac 6061 aatatttacc tccaagatgg cctcatagcc tcgctctatc gacctgaggc cgacaaagta 6121 gcagccattg agggagagtt caagcttagg acggagcaaa ggaagacctt tgtggaactc 6181 atgaaaagag gagatcttcc tgtttggctg gcctatcagg ttgcatctgc cggaataact 6241 tacacagata gaagatggtg ctttgatggc acgaccaaca acaccataat ggaagacagt 6301 gtgccggcag aggtgtggac cagacacgga gagaaaagag tgctcaaacc gaggtggatg 6361 gacgccagag tttgttcaga tcatgcggcc ctgaagtcat tcaaggagtt tgccgctggg 6421 aaaagaggag cggcttttgg agtgatggaa gccctgggaa cactgccagg acacatgaca 6481 gagagattcc aggaagccat tgacaacctc gctgtgctca tgcgggcaga gactggaagc 6541 aggccttaca aagccgcggc ggcccaattg ccggagaccc tagagaccat tatgcttttg 6601 gggttgctgg gaacagtctc gctgggaatc tttttcgtct tgatgaggaa caagggcata 6661 gggaagatgg gctttggaat ggtgactctt ggggccagcg catggctcat gtggctctcg 6721 gaaattgagc cagccagaat tgcatgtgtc ctcattgttg tgttcctatt gctggtggtg 6781 ctcatacctg agccagaaaa gcaaagatct ccccaggaca accaaatggc aatcatcatc 6841 atggtagcag taggtcttct aggcttgatc accgccaatg aactcggatg gttggagaga 6901 acaaagagtg acctaagcca tctaatggga aggagagagg agggagcaac cataggattc 6961 tcaatggaca ttgacctgcg gccagcctca gcttgggcca tctatgctgc cttgacaact 7021 ttcattaccc cagccgtcca acatgcagtg accacttcat acaacaacta ctccttaatg 7081 gcgatggcca cgcaagctgg agtgttgttt ggtatgggca aagggatgcc attctacgca 7141 tgggactttg gagtcccgct gctaatgata ggttgctact cacaattaac acccctgacc 7201 ctaatagtgg ccatcatttt gctcgtggcg cactacatgt acttgatccc agggctgcag 7261 gcagcagctg cgcgtgctgc ccagaagaga acggcagctg gcatcatgaa gaaccctgtt 7321 gtggatggaa tagtggtgac tgacattgac acaatgacaa ttgaccccca agtggagaaa 7381 aagatgggac aggtgctact catagcagta gccgtctcca gcgccatact gtcgcggacc 7441 gcctgggggt ggggggaggc tggggccctg atcacagccg caacttccac tttgtgggaa 7501 ggctctccga acaagtactg gaactcctct acagccactt cactgtgtaa catttttagg 7561 ggaagttact tggctggagc ttctctaatc tacacagtaa caagaaacgc tggcttggtc 7621 aagagacgtg ggggtggaac aggagagacc ctgggagaga aatggaaggc ccgcttgaac 7681 cagatgtcgg ccctggagtt ctactcctac aaaaagtcag gcatcaccga ggtgtgcaga 7741 gaagaggccc gccgcgccct caaggacggt gtggcaacgg gaggccatgc tgtgtcccga 7801 ggaagtgcaa agctgagatg gttggtggag cggggatacc tgcagcccta tggaaaggtc 7861 attgatcttg gatgtggcag agggggctgg agttactacg ccgccaccat ccgcaaagtt 7921 caagaagtga aaggatacac a [gap 198 bp] Expand Ns 8140 t ggcttgaaaa aagaccagga 8161 gccttttgta taaaagtgtt gtgcccatac accagcacta tgatggaaac cctggagcga 8221 ctgcagcgta ggtatggggg aggactggtc agagtgccac tctcccgcaa ctctacacat 8281 gagatgtact gggtctctgg agcgaaaagc aacaccataa aaagtgtgtc caccacgagc 8341 cagctcctct tggggcgcat ggacgggcct aggaggccag tgaaatatga ggaggatgtg 8401 aatctcggct ctggcacgcg ggctgtggta agctgcgctg aagctcccaa catgaagatc 8461 attggtaacc gcattgaaag gatccgcagt gagcacgcgg aaacgtggtt ctttgacgag 8521 aaccacccat ataggacatg ggcttaccat ggaagctatg aggcccccac acaagggtca 8581 gcatcctctc tagtaaacgg ggttgtcagg ctcctgtcaa aaccctggga tgtggtgact 8641 ggagtcacag gaatagccat gaccgacacc acaccgtatg gtcagcaaag agttttcaag 8701 gaaaaagtgg acactagggt gccagacccc caagaaggca ctcgtcaggt tatgagcatg 8761 gtctcttcct ggttgtggaa agagctaggc aaacacaaac ggccacgagt ctgtaccaaa 8821 gaagagttca tcaacaaggt tcgtagcaat gcagcattag gggcaatatt tgaagaggaa 8881 aaagagtgga agactgcagt ggaagctgtg aacgatccaa ggttctgggc tctagtggac 8941 aaggaaagag agcaccacct gagaggagag tgccagagtt gtgtgtacaa catgatggga 9001 aaaagagaaa agaaacaagg ggaatttgga aaggccaagg gcagccgcgc catctggtat 9061 atgtggctag gggctagatt tctagagttc gaagcccttg gattcttgaa cgaggatcac 9121 tggatgggga gagagaactc aggaggtggt gttgaaggg [gap 781 bp] Expand Ns 9941 gaagggacct ccgactgatg 9961 gccaatgcca tttgttcatc tgtgccagtt gactgggttc caactgggag aactacctgg 10021 tcaatccatg gaaagggaga atggatgacc attgaagaca tgcttgtggt gtggaacaga 10081 gtgtggattg aggagaacga ccacatggaa gacaagaccc cagttacgaa atggacagac 10141 attccctatt tgggaaaaag ggaagacttg tggtgtggat ctctcatagg gcacagaccg 10201 cgcaccacct gggctgagaa cattaaaaac acagtcaaca tggtgcgcag gatcataggt 10261 gaggaagaaa agtacatgga ctacctatcc acccaagtcc gctacttggg tgaagaaggg 10321 tctacacctg gagtgctgta agcaccaatc ttaatgttgt caggc

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014325.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 15885 15885 100% 0.0 100% KY014325.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 15885 15885 100% 0.0 99% KX922704.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 15867 15867 100% 0.0 99% KY014295.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 15867 15867 100% 0.0 99% KX842449.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 15858 15858 100% 0.0 99% KX832731.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 15852 15852 100% 0.0 99% KY014323.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 15852 15852 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 15852 15852 100% 0.0 99% KX838905.2 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 15851 15851 100% 0.0 99% KX922706.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 15847 15847 100% 0.0 99% KX838904.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 15843 15843 100% 0.0 99% KY014324.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 15825 15825 100% 0.0 99% KY014300.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 15822 15822 100% 0.0 99% KY014304.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 15822 15822 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 15820 15820 100% 0.0 99% KU853012.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 15813 15813 100% 0.0 99% KY014321.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 15813 15813 100% 0.0 99% LC190723.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 15798 15798 100% 0.0 99% KX673530.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 15795 15795 100% 0.0 99% KY014314.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 15795 15795 100% 0.0 99% KX922707.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 15791 15791 100% 0.0 99% KY014316.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 15789 15789 100% 0.0 99% KY014322.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 15789 15789 100% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 15778 15778 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 15771 15771 100% 0.0 99% KX922708.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 15768 15768 100% 0.0 99% KY014299.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 15741 15741 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 15735 15735 100% 0.0 99% KX280026.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 15732 15732 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 15732 15732 100% 0.0 99% KU509998.3 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 15732 15732 100% 0.0 99% KU729217.2 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 15726 15726 100% 0.0 99% KX811222.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 15726 15726 100% 0.0 99% KJ776791.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 15726 15726 100% 0.0 99% KX447512.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 15726 15726 100% 0.0 99% KU321639.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 15723 15723 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 15723 15723 100% 0.0 99% KU991811.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 15717 15717 100% 0.0 99% KX447515.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 15717 15717 100% 0.0 99% KX198135.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447516.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 15714 15714 100% 0.0 99% KX447511.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 15714 15714 100% 0.0 99% KX197192.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 15714 15714 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 15714 15714 100% 0.0 99% KU365779.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 15708 15708 100% 0.0 99% KX879604.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 15708 15708 100% 0.0 99% KX197205.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 15708 15708 100% 0.0 99% KU729218.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 15708 15708 100% 0.0 99% KU647676.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 15705 15705 100% 0.0 99% KY014303.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 15705 15705 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 15705 15705 100% 0.0 99% KX156776.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 15705 15705 100% 0.0 99% KX051563.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 15705 15705 100% 0.0 99% KU926310.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 15705 15705 100% 0.0 99% KU527068.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 15705 15705 100% 0.0 99% KU365780.1 Select seq gb|KY014320.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ42D1-URI polyprotein gene, complete cds 15699 15699 100% 0.0 99% KY014320.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 15699 15699 100% 0.0 99% KX879603.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 15699 15699 100% 0.0 99% KU820897.5 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 15699 15699 100% 0.0 99% KX447517.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 15699 15699 100% 0.0 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 15699 15699 100% 0.0 99% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 15699 15699 100% 0.0 99% KX087102.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 15699 15699 100% 0.0 99% KU926309.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 15699 15699 100% 0.0 99% KU365777.1 Select seq gb|KY014296.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ131D1-URI polyprotein gene, complete cds 15696 15696 100% 0.0 99% KY014296.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 15696 15696 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 15696 15696 100% 0.0 99% KX702400.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 15696 15696 100% 0.0 99% KX262887.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 15692 15692 99% 0.0 99% KU497555.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 15690 15690 100% 0.0 99% KU940228.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 15690 15690 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 15690 15690 100% 0.0 99% KU922923.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 15690 15690 100% 0.0 99% KU501217.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 15686 15686 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 15686 15686 100% 0.0 99% KU758877.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 15686 15686 100% 0.0 99% KU501216.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 15686 15686 100% 0.0 99% KU312312.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 15681 15681 100% 0.0 99% KY014297.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 15681 15681 100% 0.0 99% KX548902.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 15681 15681 100% 0.0 99% KU501215.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 15679 15679 100% 0.0 99% KU940224.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 15677 15677 100% 0.0 99% KX806557.2 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 15677 15677 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 15677 15677 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 15677 15677 100% 0.0 99% KX087101.2 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 15677 15677 100% 0.0 99% KU365778.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 15674 15674 100% 0.0 99% KY014327.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 15672 15672 100% 0.0 99% KY014315.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 15672 15672 100% 0.0 99% KX377337.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 15672 15672 100% 0.0 99% KX247632.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 15672 15672 100% 0.0 99% KU870645.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 15668 15668 100% 0.0 99% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 15668 15668 100% 0.0 99% KX446950.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 15663 15663 100% 0.0 99% KX856011.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 15663 15663 100% 0.0 99% KU937936.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 15663 15663 100% 0.0 99% KU820898.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 15654 15654 100% 0.0 99% KX766029.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 15654 15654 100% 0.0 99% KU740184.2

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KY014325.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds 2305 2305 100% 0.0 100% KY014325.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 2305 2305 100% 0.0 100% KY014323.1 Select seq gb|KY014295.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-010-URI polyprotein gene, complete cds 2305 2305 100% 0.0 100% KY014295.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX922704.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX922703.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 2305 2305 100% 0.0 100% KX838905.2 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 2300 2300 100% 0.0 99% KY014324.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 2300 2300 100% 0.0 99% KX838904.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 2300 2300 100% 0.0 99% KX832731.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014322.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014321.1 Select seq gb|KY014314.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0436-SER polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014314.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014304.1 Select seq gb|KY014299.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-04-MOS polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014299.1 Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 2291 2291 100% 0.0 99% KY014298.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 2291 2291 100% 0.0 99% LC190723.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX922708.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX922707.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX922705.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 2291 2291 100% 0.0 99% KX838906.2 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 2291 2291 100% 0.0 99% KU758869.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 2291 2291 100% 0.0 99% KU758868.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 2291 2291 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 2291 2291 100% 0.0 99% KU853012.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 2287 2287 100% 0.0 99% KY014300.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 2287 2287 100% 0.0 99% KY014297.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 2287 2287 100% 0.0 99% KX197205.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 2287 2287 100% 0.0 99% KX694534.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 2287 2287 100% 0.0 99% KX673530.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 2287 2287 100% 0.0 99% KX447519.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 2287 2287 100% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 2287 2287 100% 0.0 99% KX447511.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 2287 2287 100% 0.0 99% KU758877.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU758874.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU758870.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 2287 2287 100% 0.0 99% KX262887.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 2287 2287 100% 0.0 99% KU937936.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 2287 2287 100% 0.0 99% KX051563.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 2287 2287 100% 0.0 99% KU940228.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 2287 2287 100% 0.0 99% KU312314.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 2286 2286 100% 0.0 99% KY014316.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014327.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014315.1 Select seq gb|KY014312.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME58-PLA polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014312.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014306.1 Select seq gb|KY014301.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ107D1-URI polyprotein gene, complete cds 2282 2282 100% 0.0 99% KY014301.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 2282 2282 100% 0.0 99% KX879604.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 2282 2282 100% 0.0 99% KX879603.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 2282 2282 100% 0.0 99% KX856011.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 2282 2282 100% 0.0 99% KX447521.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 2282 2282 100% 0.0 99% KX447520.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 2282 2282 100% 0.0 99% KX447518.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX447512.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX447509.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX520666.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 2282 2282 100% 0.0 99% KU758876.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 2282 2282 100% 0.0 99% KU758875.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 2282 2282 100% 0.0 99% KU758873.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KX247632.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU991811.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 2282 2282 100% 0.0 99% KU926309.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 2282 2282 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 2282 2282 100% 0.0 99% KU527068.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU501216.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU365779.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 2282 2282 100% 0.0 99% KU365778.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 2280 2280 100% 0.0 99% KY014310.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 2278 2278 100% 0.0 99% KY014317.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 2278 2278 100% 0.0 99% KJ776791.2 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 2278 2278 100% 0.0 99% KX766028.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX447514.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 2278 2278 100% 0.0 99% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 2278 2278 100% 0.0 99% KX369547.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 2278 2278 100% 0.0 99% KX446951.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 2278 2278 100% 0.0 99% KU758872.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 2278 2278 100% 0.0 99% KX280026.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KX056898.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 2278 2278 100% 0.0 99% KU509998.3 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU955590.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 2278 2278 100% 0.0 99% KU926310.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU729218.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU365777.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 2278 2278 100% 0.0 99% KU312312.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 2277 2277 100% 0.0 99% KY014307.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 2273 2273 100% 0.0 99% KX766029.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 2273 2273 100% 0.0 99% KX447516.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 2273 2273 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 2273 2273 100% 0.0 99% KX446950.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 2273 2273 100% 0.0 99% KX377337.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 2273 2273 100% 0.0 99% KX087101.2 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 2273 2273 100% 0.0 99% KU729217.2 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 2273 2273 100% 0.0 99% KU497555.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 2271 2271 100% 0.0 99% KY014309.1

LOCUS KY014325 10598 bp RNA linear VRL 21-OCT-2016 DEFINITION Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-030-URI polyprotein gene, complete cds. ACCESSION KY014325 VERSION KY014325.1 DBLINK BioProject: PRJNA344504 BioSample: SAMN05844991 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10598) AUTHORS Baniecki,M.L., Barnes,K.G., Bosch,I., Cannons,A., Cone,M., Freije,C.A., Gehrke,L., Gladden-Young,A.D., Gnirke,A., Hogan,K., Isern,S., Kopp,E., Luo,C.Y., MacInnis,B., Matranga,C.B., Metsky,H.C., Michael,S., Park,D.J., Qu,J., Sabeti,P.C., Tan,A., Tomkins-Tinch,C.H., West,K.L., Winnicki,S., Wohl,S. and Yozwiak,N.L. TITLE Direct Submission JOURNAL Submitted (20-OCT-2016) Viral Genomics, Infectious Disease Program (Infectious Disease Initiative), Broad Institute, 75 Ames St, Cambridge, MA 02142, USA COMMENT ##Assembly-Data-START## Assembly Method :: github.com/broadinstitute/viral-ngs v. v1.11.0-119-g0edb62f-dirty Assembly Name :: USA_2016_FL-030_URI-1 Sequencing Technology :: Illumina; Swift LC ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10598 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/H.sapiens-wt/USA/2016/FL-030-URI" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="USA: Dade County, FL" /collection_date="02-Aug-2016" /collected_by="Florida Department of Health, Florida, USA" 5'UTR <1..67 CDS 68..10339 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="AOY08546.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IXDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" gap 1346..1528 /estimated_length=183 3'UTR 10340..>10598 ORIGIN 1 ttgaagcgaa agctagcaac agtatcaaca ggttttattt tggatttgga aacgagagtt 61 tctggtcatg aaaaacccaa aaaagaaatc cggaggattc cggattgtca atatgctaaa 121 acgcggagta gcccgtgtga gcccctttgg gggcttgaag aggctgccag ccggacttct 181 gctgggtcat gggcccatca ggatggtctt ggcgattcta gcctttttga gattcacggc 241 aatcaagcca tcactgggtc tcatcaatag atggggttca gtggggaaaa aagaggctat 301 ggaaataata aagaagttca agaaagatct ggctgccatg ctgagaataa tcaatgctag 361 gaaggagaag aagagacgag gcgcagatac tagtgtcgga attgttggcc tcctgctgac 421 cacagctatg gcagcggagg tcactagacg tgggagtgca tactacatgt acttggacag 481 aaacgatgct ggggaggcca tatctttccc aaccacattg gggatgaata agtgttatat 541 acagatcatg gatcttggac acatgtgtga tgccaccatg agctatgaat gccctatgct 601 ggatgagggg gtggaaccag atgacgtcga ttgttggtgc aacacgacgt caacttgggt 661 tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg agatctagaa gagctgtgac 721 gctcccctcc cattccacta ggaagctgca aacgcggtcg caaacctggt tggaatcaag 781 agaatacaca aagcacttga ttagagtcga aaattggata ttcaggaacc ctggcttcgc 841 gttagcagca gctgccatcg cttggctttt gggaagctca acgagccaaa aagttatata 901 cttggtcatg atactgctga ttgccccggc atacagcatc aggtgcatag gagtcagcaa 961 tagggacttt gtggaaggta tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg 1021 aggctgtgtc accgtaatgg cacaggacaa accgactgtc gacatagagc tggttacaac 1081 aacagtcagc aacatggcgg aggtaagatc ctactgctat gaggcatcaa tatcagacat 1141 ggcttcggac agccgctgcc caacacaagg tgaagcctac cttgacaagc aatcagacac 1201 tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg ggaaatggat gtggactttt 1261 tggcaaaggg agcctggtga catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa 1321 gagcatccag ccagagaatc tggag [gap 183 bp] Expand Ns 1529 tt ttcagatttg tattacttga ctatgaataa 1561 caagcactgg ttggttcaca aggagtggtt ccacgacatt ccattacctt ggcacgctgg 1621 ggcagacacc ggaactccac actggaacaa caaagaagca ctggtagagt tcaaggacgc 1681 acatgccaaa aggcaaactg tcgtggttct aggkagtcaa gaaggagcag ttcacacggc 1741 ccttgctgga gctctggagg ctgagatgga tggtgcaaag ggaaggctgt cctctggcca 1801 cttgaaatgt cgcctgaaaa tggataaact tagattgaag ggcgtgtcat actccttgtg 1861 taccgcagcg ttcacattca ccaagatccc ggctgaaaca ctgcacggga cagtcacagt 1921 ggaggtacag tacgcaggga cagatggacc ttgcaaggtt ccagctcaga tggcggtgga 1981 catgcaaact ctgaccccag ttgggaggtt gataaccgcc aaccccgtaa tcactgaaag 2041 cactgagaac tctaagatga tgctggaact tgatccacca tttggggact cttacattgt 2101 cataggagtc ggggagaaga agatcaccca ccactggcac aggagtggca gcaccattgg 2161 aaaagcattt gaagccactg tgagaggtgc caagagaatg gcagtcttgg gagatacagc 2221 ctgggacttt ggatcagttg gaggcgctct caactcattg ggcaagggca tccatcaaat 2281 ttttggagca gctttcaaat cattgtttgg aggaatgtcc tggttctcac aaatcctcat 2341 tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat ggatctattt ccctcatgtg 2401 cttggcctta gggggagtgt tgatcttctt atccacagcc gtctctgctg atgtggggtg 2461 ctcggtggac ttctcaaaga aggagacgag atgcggtaca ggggtgttcg tctataacga 2521 cgttgaagcc tggagggaca ggtacaagta ccatcctgac tccccccgta gattggcagc 2581 agcagtcaag caagcctggg aagatggtat ctgcgggatc tcctctgttt caagaatgga 2641 aaacatcatg tggagatcag tagaagggga gctcaatgca atcctggaag agaatggagt 2701 tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg tggagaggtc cacagagatt 2761 gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct tgggggaaat cgtacttcgt 2821 tagagcagca aagacaaata acagctttgt cgtggatggt gacacactga aggaatgccc 2881 actcaaacat agagcatgga acagctttct tgtggaggat catgggttcg gggtatttca 2941 cactagtgtc tggctcaagg ttagagaaga ttattcatta gagtgtgatc cagccgttat 3001 tggaacagct gttaagggaa aggaggctgt acacagtgat ctaggctact ggattgagag 3061 tgagaagaat gacacatgga ggctgaagag ggcccatctg atcgagatga aaacatgtga 3121 atggccaaag tcccacacat tgtggacaga tggaatagaa gagagtgatc tgatcatacc 3181 caagtcttta gctgggccac tcagccatca caataccaga gagggctaca ggacccaaat 3241 gaaagggcca tggcacagtg aagagcttga aattcggttt gaggaatgcc caggcactaa 3301 ggtccacgtg gaggaaacat gtggaacaag aggaccatct ctgagatcaa ccactgcaag 3361 cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg 3421 ggctaaagat ggctgttggt atggaatgga gataaggccc aggaaagaac cagaaagcaa 3481 cttagtaagg tcagtggtga ctgcaggatc aactgatcac atggatcact tctcccttgg 3541 agtgcttgtg attctgctca tggtgcagga agggctgaag aagagaatga ccacaaagat 3601 catcataagc acatcaatgg cagtgctggt agctatgatc ctgggaggat tttcaatgag 3661 tgacctggct aagcttgcaa ttttgatggg tgccaccttc gcggaaatga acactggagg 3721 agatgtagct catctggcgc tgatagcggc attcaaagtc agaccagcgt tgctggtatc 3781 tttcatcttc agagctaatt ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg 3841 tcttttgcaa actgcgatct ccgccttgga aggcgacctg atggttctca tcaatggttt 3901 tgctttggcc tggttggcaa tacgagcgat ggttgttcca cgcactgata acatcacctt 3961 ggcaatcctg gctgctctga caccactggc ccggggcaca ctgcttgtgg cgtggagagc 4021 aggccttgct acttgcgggg ggtttatgct cctctctctg aagggaaaag gcagtgtgaa 4081 gaagaactta ccatttgtca tggccctggg actaaccgct gtgaggctgg tcgaccccat 4141 caacgtggtg ggactgctgt tgctcacaag gagtgggaag cggagctggc cccctagcga 4201 agtactcaca gctgttggcc tgatatgcgc attggctgga gggttcgcca aggcagatat 4261 agagatggct gggcccatgg ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg 4321 aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc acatgggaaa aagatgcgga 4381 agtcactgga aacagtcccc ggctcgatgt ggcgctagat gagagtggtg atttctccct 4441 ggtggaggat gacggtcccc ccatgagaga gatcatactc aaggtggtcc tgatgaccat 4501 ctgtggcatg aacccaatag ccataccctt tgcagctgga gcgtggtacg tatacgtgaa 4561 gactggaaaa aggagtggtg ctctatggga tgtgcctgct cccaaggaag taaaaaaggg 4621 ggagaccaca gatggagtgt acagagtaat gactcgtaga ctgctaggtt caacacaagt 4681 tggagtggga gttatgcaag agggggtctt tcacactatg tggcacgtca caaaaggatc 4741 cgcgctgaga agcggtgaag ggagacttga tccatactgg ggagatgtca agcaggatct 4801 ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca 4861 gctcttggcc gtgccccccg gagagagagc gaggaacatc cagactctgc ccggaatatt 4921 taagacaaag gatggggaca ttggagcggt tgcgctggat tacccagcag gaacttcagg 4981 atccccaatc ctagacaagt gtgggagagt gataggactt tatggcaatg gggtcgtgat 5041 caaaaatggg agttatgtta gtgccatcac ccaagggagg agggaggaag agactcctgt 5101 tgagtgcttc gagccttcga tgctgaagaa gaagcagcta actgtcttag acttgcatcc 5161 tggagctgga aaaaccagga gagttcttcc tgaaatagtc cgtgaagcta taaaaacaag 5221 actccgtact gtgatcttag ctccaaccag ggttgtcgct gctgaaatgg aggaagccct 5281 tagagggctt ccagtgcgtt atatgacaac agcagtcaat gtcacccatt ctggaacaga 5341 aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt ctactacagc caatcagagt 5401 ccccaactat aatctgtata ttrtggatga ggcccacttc acagatccct caagtatagc 5461 agcaagagga tacatttcaa caagggttga gatgggcgag gcggctgcca tcttcatgac 5521 cgccacgcca ccaggaaccc gtgacgcatt tccggactcc aactcaccaa ttatggacac 5581 cgaagtggaa gtcccagaga gagcctggag ctcaggcttt gattgggtga cggatcattc 5641 tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc aatgagatcg cagcttgtct 5701 gacaaaggct ggaaaacggg tcatacagct cagcagaaag acttttgaga cagagttcca 5761 gaaaacaaaa catcaagagt gggactttgt cgtgacaacc gacatttcag agatgggcgc 5821 caactttaaa gctgaccgtg tcatagattc caggagatgc ctaaagccgg tcatacttga 5881 tggcgagaga gtcattctgg ctggacccat gcctgtcaca catgccagcg ctgcccagag 5941 gagggggcgc ataggcagga atcccaacaa acctggagat gagtatctgt atggaggtgg 6001 gtgcgcagag actgacgaag accatgcaca ctggcttgaa gcaagaatgc tccttgacaa 6061 tatttacctc caagatggcc tcatagcctc gctctatcga cctgaggccg acaaagtagc 6121 agccattgag ggagagttca agcttaggac ggagcaaagg aagacctttg tggaactcat 6181 gaaaagagga gatcttcctg tttggctggc ctatcaggtt gcatctgccg gaataactta 6241 cacagataga agatggtgct ttgatggcac gaccaacaac accataatgg aagacagtgt 6301 gccggcagag gtgtggacca gacacggaga gaaaagagtg ctcaaaccga ggtggatgga 6361 cgccagagtt tgttcagatc atgcggccct gaagtcattc aaggagtttg ccgctgggaa 6421 aagaggagcg gcttttggag tgatggaagc cctgggaaca ctgccaggac acatgacaga 6481 gagattccag gaagccattg acaacctcgc tgtgctcatg cgggcagaga ctggaagcag 6541 gccttacaaa gccgcggcgg cccaattgcc ggagacccta gagaccatta tgcttttggg 6601 gttgctggga acagtctcgc tgggaatctt tttcgtcttg atgaggaaca agggcatagg 6661 gaagatgggc tttggaatgg tgactcttgg ggccagcgca tggctcatgt ggctctcgga 6721 aattgagcca gccagaattg catgtgtcct cattgttgtg ttcctattgc tggtggtgct 6781 catacctgag ccagaaaagc aaagatctcc ccaggacaac caaatggcaa tcatcatcat 6841 ggtagcagta ggtcttctag gcttgatcac cgccaatgaa ctcggatggt tggagagaac 6901 aaagagtgac ctaagccatc taatgggaag gagagaggag ggagcaacca taggattctc 6961 aatggacatt gacctgcggc cagcctcagc ttgggccatc tatgctgcct tgacaacttt 7021 cattacccca gccgtccaac atgcagtgac cacttcatac aacaactact ccttaatggc 7081 gatggccacg caagctggag tgttgtttgg tatgggcaaa gggatgccat tctacgcatg 7141 ggactttgga gtcccgctgc taatgatagg ttgctactca caattgacac ccctgaccct 7201 aatagtggcc atcattttgc tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc 7261 agcagctgcg cgtgctgccc agaagagaac ggcagctggc atcatgaaga accctgttgt 7321 ggatggaata gtggtgactg acattgacac aatgacaatt gacccccaag tggagaaaaa 7381 gatgggacag gtgctactca tagcagtagc cgtctccagc gccatactgt cgcggaccgc 7441 ctgggggtgg ggggaggctg gggccctgat cacagccgca acttccactt tgtgggaagg 7501 ctctccgaac aagtactgga actcctctac agccacttca ctgtgtaaca tttttagggg 7561 aagttacttg gctggagctt ctctaatcta cacagtaaca agaaacgctg gcttggtcaa 7621 gagacgtggg ggtggaacag gagagaccct gggagagaaa tggaaggccc gcttgaacca 7681 gatgtcggcc ctggagttct actcctacaa aaagtcaggc atcaccgagg tgtgcagaga 7741 agaggcccgc cgcgccctca aggacggtgt ggcaacggga ggccatgctg tgtcccgagg 7801 aagtgcaaag ctgagatggt tggtggagcg gggatacctg cagccctatg gaaaggtcat 7861 tgatcttgga tgtggcagag ggggctggag ttactacgcc gccaccatcc gcaaagttca 7921 agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag 7981 ctatgggtgg aacatagtcc gtctcaagag tggggtggac gtctttcata tggcggctga 8041 gccgtgtgac acgttgctat gtgacatagg tgagtcatca tctagtcctg aagtggaaga 8101 agcacggacg ctcagagtcc tctccatggt gggggattgg cttgaaaaaa gaccaggagc 8161 cttttgtata aaagtgttgt gcccatacac cagcactatg atggaaaccc tggagcgact 8221 gcagcgtagg tatgggggag gactggtcag agtgccactc tcccgcaact ctacacatga 8281 gatgtactgg gtctctggag cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca 8341 gctcctcttg gggcgcatgg acgggcctag gaggccagtg aaatatgagg aggatgtgaa 8401 tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat 8461 tggtaaccgc attgaaagga tccgcagtga gcacgcggaa acgtggttct ttgacgagaa 8521 ccacccatat aggacatggg cttaccatgg aagctatgag gcccccacac aagggtcagc 8581 atcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg 8641 agtcacagga atagccatga ccgacaccac accgtatggt cagcaaagag ttttcaagga 8701 aaaagtggac actagggtgc cagaccccca agaaggcact cgtcaggtta tgagcatggt 8761 ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg ccacgagtct gtaccaaaga 8821 agagttcatc aacaaggttc gtagcaatgc agcattaggg gcaatatttg aagaggaaaa 8881 agagtggaag actgcagtgg aagctgtgaa cgatccaagg ttctgggctc tagtggacaa 8941 ggaaagagag caccacctga gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa 9001 aagagaaaag aaacaagggg aatttggaaa ggccaagggc agccgcgcca tctggtatat 9061 gtggctaggg gctagatttc tagagttcga agcccttgga ttcttgaacg aggatcactg 9121 gatggggaga gagaactcag gaggtggtgt tgaagggctg ggattacaaa gactcggata 9181 tgtcctagaa gagatgagtc gcataccagg aggaaggatg tatgcagatg acactgctgg 9241 ctgggatacc cgcatcagca ggtttgatct agagaatgaa gctctaatca ccaaccaaat 9301 ggagaaaggg cacagggcct tggcattggc cataatcaag tacacatacc aaaacaaagt 9361 ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt atggacatta tttcgagaca 9421 agaccaaagg gggagcggac aagttgtcac ttacgctctt aacacattta ccaacctagt 9481 ggtgcaactc attcggaata tggaggctga ggaagttcta gagatgcaag acttgtggct 9541 gctgcggagg tcagagaaag tgaccaactg gttgcagagc aacggatggg ataggctcaa 9601 acgaatggca gtcagtggag atgattgcgt tgtgaagcca attgatgata ggtttgcaca 9661 tgccctcagg ttcttgaatg atatgggaaa agttaggaag gacacacaag agtggaaacc 9721 ctcaactgga tgggacaact gggaagaagt tccgttttgc tcccaccact tcaacaagct 9781 ccatctcaag gatgggaggt ccattgtggt tccctgccgc caccaagatg aactgattgg 9841 ccgggcccgc gtctctccag gggcgggatg gagcatccgg gagactgctt gcctagcaaa 9901 atcatatgcg caaatgtggc agctccttta tttccacaga agggacctcc gactgatggc 9961 caatgccatt tgttcatctg tgccagttga ctgggttcca actgggagaa ctacctggtc 10021 aatccatgga aagggagaat ggatgaccat tgaagacatg cttgtggtgt ggaacagagt 10081 gtggattgag gagaacgacc acatggaaga caagacccca gttacgaaat ggacagacat 10141 tccctatttg ggaaaaaggg aagacttgtg gtgtggatct ctcatagggc acagaccgcg 10201 caccacctgg gctgagaaca ttaaaaacac agtcaacatg gtgcgcagga tcataggtga 10261 ggaagaaaag tacatggact acctatccac ccaagtccgc tacttgggtg aagaagggtc 10321 tacacctgga gtgctgtaag caccaatctt aatgttgtca ggcctgctag tcagccacag 10381 cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa gctgggaaac caagcctata 10441 gtcaggccga gaacgccatg gcacggaaga agccatgctg cctgtgagcc cctcagagga 10501 cactgagtca aaaaacccca cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc 10561 ttccccaccc ttcaatctgg ggcctgaact ggagatca