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As of Thursday, *August 25, 2016, VDH has reported 69 cases of Zika virus disease in Virginia residents to the CDC ( 7 in Northwest Region, 36 in Northern Region, 7 in Eastern Region, 11 in Central Region and 8 in Southwest Region). All Virginia cases are associated with travel to a Zika-affected area. CDC has issued a travel alert (Level 2-Practice Enhanced Precautions) for people traveling to regions and certain countries where Zika virus transmission is ongoing. *Updated weekly. Week runs Thursday – Wednesday.

Zika Virus – August 25, 2016. Texas has had 127 reported cases of Zika virus disease. This count includes three pregnant women, two infants infected before birth, and one person who had sexual contact with a traveler. Texas Zika Cases by County: County Cases Bell 4 Bexar 8 Brazos 1 Collin 3 Dallas 30 Denton 4 El Paso 1 Ellis 1 Fort Bend 6 Frio 1 Gray 1 Galveston 2 Grayson 1 Greg 1 Hamilton 1 Harris 33 Jefferson 1 Lubbock 1 Matagorda 1 Medina 1 Palo Pinto 1 Randall 1 Tarrant 14 Travis 3 Val Verde 1 Walker 1 Williamson 3 Wise 1 Total 127 Note: Zika case data for Texas will be updated each weekday no later than 11 a.m.

Aug 24 update 1-Aug asymp 52 contact 26 2-Aug asymp 52 contact 26 3-Aug asymp 52 contact 26 4-Aug asymp 52 contact 26 5-Aug asymp 52 contact 26 Invest date collect negative positive pending MD1 1-Aug 54 54 0 0 B1 1-Aug 70 70 0 0 Wyn 8-Aug 437 418 11 8 9-Aug 455 424 17 14 10-Aug 498 424 16 46 11-Aug 511 480 19 12 12-Aug 517 492 21 4 15-Aug 518 492 22 4 16-Aug 518 492 22 4 17-Aug 518 492 23 4 18-Aug 519 492 23 4 19-Aug 519 492 23 4 22-Aug 519 492 23 4 23-Aug 519 492 29 0 24-Aug 519 492 27 0 MD2 5-Aug 11 8-Aug 19 16 0 3 9-Aug 19 16 0 3 10-Aug 19 18 0 1 11-Aug 19 18 0 1 12-Aug 19 19 0 0 15-Aug 21 19 0 2 16-Aug 21 19 0 2 17-Aug 21 19 0 2 18-Aug 21 19 0 2 19-Aug 21 19 0 2 22-Aug 21 19 0 2 23-Aug 21 19 0 2 24-Aug 21 19 0 2 PB1 8-Aug 1 0 0 1 9-Aug 1 0 0 1 10-Aug 3 0 0 3 11-Aug 3 2 0 1 12-Aug 3 3 0 0 15-Aug 3 3 0 0 16-Aug 3 3 0 0 17-Aug 3 3 0 0 18-Aug 3 3 0 0 19-Aug 3 3 0 0 22-Aug 3 3 0 0 23-Aug 3 3 0 0 24-Aug 3 3 0 0 MD3 17-Aug 0 18-Aug 0 19-Aug 0 22-Aug 0 23-Aug 0 24-Aug 0 MD4 15-Aug 5 1 0 4 16-Aug 5 1 0 4 17-Aug 6 1 0 5 18-Aug 6 1 0 5 19-Aug 6 1 0 5 22-Aug 6 1 0 5 23-Aug 6 1 0 5 24-Aug 6 1 0 5 MD5 17-Aug 2 0 0 2 18-Aug 2 0 0 2 19-Aug 2 0 0 2 22-Aug 8 6 0 2 23-Aug 26 6 0 20 24-Aug 27 24 0 3 MD6 17-Aug 18-Aug 19-Aug 22-Aug comb MD7 18-Aug 0 19-Aug 0 22-Aug 0 23-Aug 0 24-Aug 0 MD8 18-Aug 19-Aug MB 22-Aug comb 5 23-Aug 0 24-Aug 0 MD9 19-Aug 22-Aug comb PIN 23-Aug 3 0 0 3 24-Aug 3 0 0 3 PB2 24-Aug 0

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Zika Virus – August 24, 2016. Texas has had 127 reported cases of Zika virus disease. This count includes three pregnant women, two infants infected before birth, and one person who had sexual contact with a traveler. Texas Zika Cases by County: County Cases Bell 4 Bexar 8 Brazos 1 Collin 3 Dallas 30 Denton 4 El Paso 1 Ellis 1 Fort Bend 6 Frio 1 Gray 1 Galveston 2 Grayson 1 Greg 1 Hamilton 1 Harris 33 Jefferson 1 Lubbock 1 Matagorda 1 Medina 1 Palo Pinto 1 Randall 1 Tarrant 14 Travis 3 Val Verde 1 Walker 1 Williamson 3 Wise 1 Total 127 http://www.texaszika.org/

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August 19, 2016 - Weekly Texas Data for National Zika Pregnancy Registry Texas has reported 46 individuals into the CDC’s Zika Pregnancy Registry. That number includes three pregnant women who are confirmed Zika cases. It also includes pregnant women and any newborns who have laboratory evidence of Zika infection but don’t qualify as Zika cases because they have had no symptoms or because the infection couldn’t be specifically identified as Zika virus. Texas provides data to the Zika Pregnancy Registry weekly. http://www.texaszika.org/

Zika Virus – August 24, 2016. Texas has had 127 reported cases of Zika virus disease. This count includes three pregnant women, two infants infected before birth, and one person who had sexual contact with a traveler. Texas Zika Cases by County: County Cases Bell 4 Bexar 8 Brazos 1 Collin 3 Dallas 30 Denton 4 El Paso 1 Ellis 1 Fort Bend 6 Frio 1 Gray 1 Galveston 2 Grayson 1 Greg 1 Hamilton 1 Harris 33 Jefferson 1 Lubbock 1 Matagorda 1 Medina 1 Palo Pinto 1 Randall 1 Tarrant 14 Travis 3 Val Verde 1 Walker 1 Williamson 3 Wise 1 Total 127 Note: Zika case data for Texas will be updated each weekday no later than 11 a.m.

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AST TEXAS (KLTV) - The first Zika virus case has been reported in East Texas. Gregg County health officials have confirmed the first Zika diagnosis in East Texas. Fred Killingworth of the Gregg County Health Department reported the Zika diagnosis to the regional health board. “We found out that we have an active case of Zika,” said Fred Killingsworth of the Gregg County Health Department. “It is travel related.” Killingsworth said the woman is not pregnant and believes there should be no serious risk to the person. The Gregg County Health Department said the infected female traveled to Puerto Rico to visit family this summer. Two weeks ago, she returned back home to Gregg County to find she was experiencing symptoms of the virus. Monday blood work confirmed she tested positive for the virus. “The thing to rest assured is that we don't have a mosquitoes that are carrying it,” said Killingsworth. He explained the likelihood of the mosquito borne illness to spread is not, despite the recent increase in mosquitoes across East Texas. “Right now we're going to have a spike in it because the last couple of weeks we've had a lot of water,” said Killingsworth. “Once we start getting some cool temperatures the mosquito population dies off, then it's something you don't have to worry about.” Until then, the health department urges prevention should be everyone's highest priority. Officials with the Texas Department of State Health Services say Texas has had 122 reported cases of Zika virus disease. All the cases are associated with travel to an area where Zika is being spread. This count includes three pregnant women, two infants infected before birth, and one person who had sexual contact with a traveler. http://www.ktre.com/story/32814691/first-zika-virus-case-reported-in-east-texas

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South Dakota Reports First Zika Virus Infection 86 81 5 0 0 FOR IMMEDIATE RELEASE: Monday, August 22, 2016 CONTACT: Lon Kightlinger, (605) 773-3737 South Dakota Reports First Zika Virus Infection PIERRE, S.D. – South Dakota has its first Zika virus infection, a woman who traveled to a country where Zika virus is currently transmitted and later developed symptoms, the Department of Health said today. The infection was confirmed by the Centers for Disease Control and Prevention. “This is a good reminder for anyone who travels to Zika-affected areas that it’s important to protect themselves from mosquito bites,” said Dr. Lon Kightlinger, state epidemiologist for the department. Zika is a tropical mosquito-borne infection. The virus is not known to be carried by the mosquitoes found in South Dakota. For most healthy adults the infection is mild and only one in five people who are infected will become ill. Symptoms typically occur two to seven days after a bite and include fever, muscle or eye pain and a rash. However, pregnant women who are infected run the risk of delivering babies born with the birth defect microcephaly. Babies with the defect have heads smaller than expected and often have smaller brains that might not have developed properly. Pregnant women should avoid traveling to countries with active transmission of Zika, including Miami-Dade County in Florida. Men who live in or have visited Zika transmission areas should abstain from unprotected sex. Individuals who do travel to a Zika-affected area and become ill within two weeks should see their doctor. Pregnant women who travel to Zika transmission areas should be tested two to 12 weeks after their return, whether they are sick or not. There are no vaccines or treatment for the virus. To avoid infection travelers to Zika-affected areas, particularly pregnant women, should follow strict mosquito control precautions – wear pants and long-sleeved shirts, use an EPA-registered insect repellent and ensure that windows and doors have intact screens. For more information on the virus and the latest travel advisories check the CDC’s Zika site at http://www.cdc.gov/zika/. Strengthening South Dakota’s response to current and emerging public health threats is one objective of the Department of Health’s 2015-2020 strategic plan, http://doh.sd.gov/strategicplan.

South Dakota has its first Zika virus infection, a woman who traveled to a country where Zika virus is currently transmitted and later developed symptoms, the Department of Health said today. The infection was confirmed by the Centers for Disease Control and Prevention. http://news.sd.gov/newsitem.aspx?id=20813

Second Palm Beach county resident with local-transmitted Zika from Lake Worth BY ISRAEL BALDERAS THURSDAY, AUGUST 25TH 2016 The second known locally-transmitted case of Zika was discovered in Palm Beach County. PHOTO/WPEC share now! tweet now! LAKE WORTH, FL. — A new, second locally transmitted case of the Zika virus has been discovered in Palm Beach County. There are conflicting reports about where the patient lives, and whether or not Gov. Rick Scott’s office is being transparent with the public. View image on Twitter At the Guatemalan-Maya Center in Lake Worth, a sign posted on several doors in Spanish reads, “Prevenga el Zika…" which urges the public to take precautionary measures to help stop the spread of the Zika virus locally. This takes on a new level of urgency as sources tell CBS 12 News the latest locally transmitted Zika case comes out of Lake Worth. "The news today is that we have one more what we believe is a non-travel related case in Palm Beach County,” said Gov. Scott, while attending a roundtable meeting in Tampa Wednesday morning. But the question is where? The governor's office and state health officials refused on Wednesday to disclose specifics of where the two cases of non-travel related Zika are located within the county. News of the first person infected was announced on August 8 and the second one today. CBS 12 has learned that person lives in Lake Worth. According to the Palm Beach Post, it involves a mother who says she hasn't traveled out of the Palm Beach County area in months. As for why the governor's office or the county's health department won't be more forthright about detailed locations of where Zika infected people live, CBS 12 News was told by Mara Gambineri, the Communications Director for the Florida Department of Health, “it's an active investigation.” "Often times, the transmission may occur away from the residence of that individual,” said Celeste Philip, Florida’s Surgeon General in a talk with reporters on Wednesday afternoon. “So having that information presented without understanding better timeline, where we believe exposure occurred is not helpful from a public health perspective." And officials will only notify residents of local transmission clusters, when two or more people - not living together- are infected locally by Zika within 1-square mile area over a period of two weeks or more. But some local Lake Worth officials say they're being left out in the dark and they’re not happy about it. CBS 12 reached out to all of the city commissioners – including the mayor - about whether or not the governor's office or county health officials had informed them of the latest Zika case located in Lake Worth. Two commissioners said they had no clue, going on to state the governor needs to be more forthright. CBS 12 was told by one source, that Mayor Pam Triolo, who didn't return any phone calls – is aware but has not made the information public. http://cbs12.com/news/zika/second-palm-beach-county-resident-with-local-transmitted-zika-from-lake-worth

Lake Worth woman tests positive for Zika, says Zika virus is in Palm Beach County Michelle Quesada 11:56 PM, Aug 24, 2016 3 hours ago Autoplay: X Preparing For Possible Flooding WPTV SHOW CAPTION LAKE WORTH, Fla. - A local woman has sound the alarm that Zika is in Palm Beach County and she's proof. The woman, who does not want to be identified, believes she was infected around her home in Lake Worth even though the health department says active transmissions of the Zika virus are only happening in Miami-Dade County. For the last 24 hours the woman who says she is the second non-travel related case of Zika in Palm Beach County, says she has been answering questions from the State Health Department. "They want to know where, they want to know when, they're trying to track down a timeline," she said. They are trying to figure out where the 24-year-old may have been bitten by a Zika-infected mosquito in Palm Beach County. "A lot of people were telling it wasn't a possibility, but it clearly was a possibility," she added. She says before she started showing symptoms she noticed two mosquito bites on her arm, but living in South Florida she didn't think anything of it. "I don't spend a lot of time outdoors, so it could have literally been walking to my car," said the woman. Then, the fever set in followed by a rash and joint pain. She kept a log of all the Zika-related symptoms. Her doctor contacted the health department which directed her to get tested for the virus at JFK Medical Center. The next day her symptoms were worse. "I could no longer walk, I was crawling, army crawling. I couldn't bend my hands, I could bend my feet at the ankles. I could only wiggle my toes," she added. She says the emphasis on locally-acquired Zika cases happening only in Miami-Dade County caused doctors to doubt she could have the virus. "They were kind of like no, this isn't Zika, this isn't how it presents," she said as she described what doctors told her at the hospital she was admitted to. "So it made me feel like something more severe was happening and it was very nerve wracking," she said. On Tuesday, she found out she has the Zika virus. She says she is doing better but still feels weak and dizzy at times. What scares her even more than what she's been through is what she doesn't know about the virus. "There's not a lot of information right now, whose to say that if I were to get pregnant in 2, 5, 7 years, that this couldn't affect me?" she added. Today the woman says one of her neighbors was being tested for Zika. Her 5-year-old daughter is also being tested. She says the health department advised her to wear long sleeves and limit her exposure outdoors. http://www.wptv.com/news/region-c-palm-beach-county/lake-worth/lake-worth-woman-tests-positive-for-zika-says-zika-virus-is-in-palm-beach-county

Lake Worth woman confirmed as second county resident with local Zika 12:45 p.m. Wednesday, Aug. 24, 2016 | Filed in: Central PBC A 24-year-old Lake Worth woman has been confirmed as the second Palm Beach County resident to contract Zika virus through a local mosquito. The woman was hospitalized from Aug. 19-21 with classic Zika symptoms that included fever, rash, eye redness and joint pain, but a final diagnosis that she was infected by the mosquito-borne virus didn’t come until she was phoned Tuesday by county health officials. A 24-year-old Lake Worth woman has been confirmed as the second Palm Beach County resident to contract Zika virus through a local mosquito. The woman was hospitalized from Aug. 19-21 with classic Zika symptoms that included fever, rash, eye redness and joint pain, but a final diagnosis that she was infected by the mosquito-borne virus didn’t come until she was phoned Tuesday by county health officials. “I don’t want to be labeled, walking down the street and have people say, ‘Oh, there’s Zika,’ ” the woman said. “But I want people to know that this should be on their radar.” Gov. Rick Scott announced the local case during a Zika roundtable Wednesday in Hillsborough County. That was followed by word from the Florida Department of Health that the county’s two cases of homegrown Zika are not related. The first case was made public Aug. 8 but no further information was released about the person except that he or she likely was infected while in Wynwood, a trendy arts district north of downtown Miami that is ground zero for locally acquired Zika in the U.S. The lack of a connection between the two patients means there is no indication of a local outbreak in Palm Beach County, health officials said. The Centers for Disease Control and Prevention defines a local outbreak as two or more people infected by Zika who do not share a household, did not contract the virus through travel or sexual transmission, and who acquired the disease within 1-square mile over a period of two weeks or more. Those conditions were met when the state revealed two areas — Wynwood and the South Beach neighborhood of Miami Beach — in Miami-Dade County with multiple cases of Zika transmitted through local mosquitoes. Scott held a conference call Wednesday with Palm Beach County officials to assure them that steps are underway to gauge whether residents are at risk. “We’ll be going door-to-door to do outreach in the Palm Beach area. We’ll be doing strategic testing to identify if any other people may have contracted the Zika virus,” Scott said. The Lake Worth woman said she began experiencing abdominal pains Aug. 10, just after noticing two mosquito bites on her right forearm. Within days her temperature shot up to 103.5 degrees, and the county health department was notified. The woman underwent tests at a local hospital but said her doctors remained highly skeptical that she had Zika. “I felt like they were thinking, ‘No, this can’t be,’ ” she said. “Physicians need to know this is a possibility.” The woman, who works as an office manager and is the mother of a young child, said she’s been in constant contact with the county health department since she was diagnosed. She’s been advised to stay indoors as much as possible and to wear long sleeves and repellent when venturing outside. As of late Wednesday, county mosquito control officials had not yet visited her home, the woman said. At least one of her neighbors provided a sample to health officials to test for Zika, she said. Her child is also undergoing tests. Experts say that only 20 percent of patients with Zika show symptoms similar to the woman in Lake Worth. The real danger is for pregnant women because the virus can result in microcephaly, a birth defect that produces abnormally small heads and brains in newborns. While she is finally beginning to feel better, the Lake Worth patient said she’s worried about the future. “I’m 24 years old,” she said. “What if I get pregnant in two years? Who’s to say this virus is going to be out of my system? Who’s to say this is not going to affect my future child? There’s not much research and not a lot of answers, and that’s scary.” http://www.palmbeachpost.com/news/news/local/reports-second-non-travel-related-zika-case-in-pal/nsLJn/

Media reports describe local Zika case in Lake Worth,Florida, 24F who did not travel outside of Palm Beach County. She was symptomatic beginning August 10, was hospitalized Aug 19-21, and was confirmed August 23.

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Lake Worth woman tests positive for Zika, says Zika virus is in Palm Beach County Michelle Quesada 11:56 PM, Aug 24, 2016 3 hours ago Autoplay: X Preparing For Possible Flooding WPTV SHOW CAPTION LAKE WORTH, Fla. - A local woman has sound the alarm that Zika is in Palm Beach County and she's proof. The woman, who does not want to be identified, believes she was infected around her home in Lake Worth even though the health department says active transmissions of the Zika virus are only happening in Miami-Dade County. For the last 24 hours the woman who says she is the second non-travel related case of Zika in Palm Beach County, says she has been answering questions from the State Health Department. "They want to know where, they want to know when, they're trying to track down a timeline," she said. They are trying to figure out where the 24-year-old may have been bitten by a Zika-infected mosquito in Palm Beach County. "A lot of people were telling it wasn't a possibility, but it clearly was a possibility," she added. She says before she started showing symptoms she noticed two mosquito bites on her arm, but living in South Florida she didn't think anything of it. "I don't spend a lot of time outdoors, so it could have literally been walking to my car," said the woman. Then, the fever set in followed by a rash and joint pain. She kept a log of all the Zika-related symptoms. Her doctor contacted the health department which directed her to get tested for the virus at JFK Medical Center. The next day her symptoms were worse. "I could no longer walk, I was crawling, army crawling. I couldn't bend my hands, I could bend my feet at the ankles. I could only wiggle my toes," she added. She says the emphasis on locally-acquired Zika cases happening only in Miami-Dade County caused doctors to doubt she could have the virus. "They were kind of like no, this isn't Zika, this isn't how it presents," she said as she described what doctors told her at the hospital she was admitted to. "So it made me feel like something more severe was happening and it was very nerve wracking," she said. On Tuesday, she found out she has the Zika virus. She says she is doing better but still feels weak and dizzy at times. What scares her even more than what she's been through is what she doesn't know about the virus. "There's not a lot of information right now, whose to say that if I were to get pregnant in 2, 5, 7 years, that this couldn't affect me?" she added. Today the woman says one of her neighbors was being tested for Zika. Her 5-year-old daughter is also being tested. She says the health department advised her to wear long sleeves and limit her exposure outdoors. http://www.wptv.com/news/region-c-palm-beach-county/lake-worth/lake-worth-woman-tests-positive-for-zika-says-zika-virus-is-in-palm-beach-county

Descriptions Align Segment-ID Name Score E-Value Identity EPI824766 A/Michigan/84/2016 (A/H3N2) segment 6 (NA) 2508.9 0.000000e+00 1358/1358 (100%) EPI704981 A/swine/Ohio/A01727442/2015 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1347/1358 (99%) EPI703955 A/swine/Ohio/A01796509/2015 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1347/1358 (99%) EPI703879 A/swine/Ohio/A01895033/2015 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1347/1358 (99%) EPI678351 A/swine/Arkansas/A01857979/2015 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1347/1358 (99%) EPI641459 A/swine/Minnesota/A01847917/2015 (A/H1N2) segment 6 (NA) 2447.9 0.000000e+00 1347/1358 (99%) EPI669180 A/swine/Indiana/A01260958/2015 (A/H3N2) segment 6 (NA) 2436.9 0.000000e+00 1345/1358 (99%) EPI573600 A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA) 2436.9 0.000000e+00 1345/1358 (99%) EPI558823 A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA) 2431.3 0.000000e+00 1344/1358 (98%) EPI573810 A/swine/Indiana/A01840344/2014 (A/H1N2) segment 6 (NA) 2420.2 0.000000e+00 1342/1358 (98%) EPI533783 A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA) 2420.2 0.000000e+00 1342/1358 (98%) EPI531060 A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA) 2420.2 0.000000e+00 1342/1358 (98%) EPI532377 A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA) 2416.5 0.000000e+00 1341/1358 (98%) EPI573351 A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1341/1358 (98%) EPI545408 A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1341/1358 (98%) EPI545380 A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1341/1358 (98%) EPI542531 A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1341/1358 (98%) EPI538665 A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1341/1358 (98%) EPI534948 A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA) 2414.7 0.000000e+00 1341/1358 (98%) EPI532374 A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1340/1358 (98%) EPI530997 A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA) 2411.0 0.000000e+00 1340/1358 (98%) EPI574155 A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI573480 A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI559534 A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI558882 A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI558852 A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI558843 A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI550294 A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI542448 A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI538671 A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA) 2409.2 0.000000e+00 1340/1358 (98%) EPI557541 A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA) 2405.5 0.000000e+00 1338/1356 (98%) EPI669173 A/swine/Indiana/A01260933/2015 (A/H1N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI647635 A/swine/Indiana/A01260918/2015 (A/H0) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI572995 A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI545841 A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI542564 A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI542552 A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI542543 A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI533959 A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA) 2403.6 0.000000e+00 1339/1358 (98%) EPI685646 A/swine/North Carolina/A02025176/2015 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1338/1358 (98%) EPI557543 A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1337/1356 (98%) EPI557533 A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1337/1356 (98%) EPI542549 A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA) 2399.9 0.000000e+00 1338/1358 (98%) EPI647624 A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI620515 A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI612572 A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI600450 A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI600348 A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI573036 A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI573021 A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI559531 A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI559026 A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI558840 A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI558835 A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI558820 A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI550297 A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI548260 A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI460388 A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI460382 A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI460373 A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI460367 A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI393526 A/West Virginia/15/2012 (A/H3N2) segment 6 (NA) 2398.1 0.000000e+00 1338/1358 (98%) EPI593957 A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA) 2394.4 0.000000e+00 1337/1358 (98%) EPI750301 A/swine/North Carolina/A01732197/2016 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI709842 A/swine/North Carolina/A01728545/2015 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI678633 A/swine/North Carolina/A01945452/2015 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI678334 A/swine/North Carolina/A01945753/2015 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI672888 A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI600345 A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI598965 A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI584809 A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI559549 A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI542525 A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI502642 A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI460391 A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI446797 A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI443547 A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI443523 A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI433303 A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI433295 A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI427179 A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI414172 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI406470 A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI401685 A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI401681 A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI400106 A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI400096 A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI398520 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI398502 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI398494 A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI398486 A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI398034 A/Maryland/22/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397661 A/Maryland/28/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397620 A/Maryland/25/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397531 A/Ohio/47/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397523 A/Ohio/44/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397515 A/Ohio/36/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397431 A/Ohio/81/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397350 A/Ohio/37/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397208 A/Ohio/78/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI397088 A/Indiana/52/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI396276 A/Indiana/135/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI396261 A/Indiana/127/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI396253 A/Indiana/126/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI396234 A/Ohio/34/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI395885 A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI395336 A/Indiana/21/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI395266 A/Ohio/65/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI395258 A/Ohio/35/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI394062 A/Indiana/21/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI393694 A/West Virginia/16/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI393680 A/West Virginia/10/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI393672 A/Ohio/71/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI393316 A/Ohio/38/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI393310 A/West Virginia/09/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI393305 A/Indiana/18/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI392925 A/Maryland/20/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1335/1355 (98%) EPI392704 A/Indiana/52/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI392683 A/Indiana/13/2012 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI669248 A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1336/1358 (98%) EPI396298 A/Maryland/23/2012 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1335/1356 (98%) EPI393781 A/Ohio/74/2012 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1335/1356 (98%) EPI684573 A/swine/Ohio/A01797012/2015 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI669155 A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI620491 A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI573808 A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI573794 A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI573453 A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI530300 A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI530285 A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI510212 A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI507285 A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI505103 A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI446924 A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI446916 A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI446868 A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI446860 A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI446835 A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI433542 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI433535 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI408203 A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI406575 A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI401703 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI401688 A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI398671 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI398544 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI398536 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397946 A/Ohio/84/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397904 A/Hawaii/03/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397626 A/Ohio/57/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397623 A/Indiana/150/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397554 A/Ohio/86/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397502 A/Indiana/104/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397425 A/Minnesota/15/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397403 A/Indiana/99/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI396207 A/Indiana/149/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI396191 A/Ohio/77/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI396182 A/Indiana/77/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI395876 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI395868 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI394925 A/Illinois/11/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI394059 A/Indiana/38/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI393701 A/Ohio/64/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI393518 A/Indiana/65/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI393297 A/Indiana/21/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI393291 A/Indiana/38/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI392752 A/Indiana/16/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI392698 A/Indiana/46/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI392695 A/Indiana/43/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI392691 A/Indiana/31/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI383539 A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI346492 A/West Virginia/06/2011 (A/H3N2) segment 6 (NA) 2387.0 0.000000e+00 1336/1358 (98%) EPI397097 A/Indiana/103/2012 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1335/1357 (98%) EPI388289 A/Indiana/17/2012 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1331/1351 (98%) EPI663314 A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 6 (NA) 2383.3 0.000000e+00 1335/1358 (98%) EPI504865 A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA) 2383.3 0.000000e+00 1335/1358 (98%) EPI684593 A/swine/North Carolina/A01945973/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI682818 A/swine/North Carolina/A01945969/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI663381 A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI647585 A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI647505 A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI623704 A/swine/Indiana/A01260882/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI623701 A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI590660 A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI586152 A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI545817 A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1336/1359 (98%) EPI545814 A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI545417 A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1336/1359 (98%) EPI530310 A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI509736 A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI505063 A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI492350 A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI488006 A/swine/USA/A01291038/2013 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI453567 A/swine/Indiana/A01260230/2013 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI446885 A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI446876 A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI446827 A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI443555 A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI443539 A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI443531 A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI443515 A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI443507 A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI426886 A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI414188 A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI404892 A/Iowa/16/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI401610 A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI400102 A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI398123 A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI398107 A/Ohio/90/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397931 A/Ohio/19/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397918 A/Ohio/17/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397750 A/Ohio/87/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397627 A/Ohio/63/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397625 A/Ohio/43/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397624 A/Ohio/80/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397621 A/Ohio/79/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397547 A/Ohio/83/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397539 A/Ohio/56/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397395 A/Indiana/93/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397384 A/Indiana/138/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397377 A/Indiana/123/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI397363 A/Ohio/23/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI396279 A/Indiana/144/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI396269 A/Indiana/133/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395958 A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395950 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395934 A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395921 A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395860 A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395852 A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395742 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395330 A/West Virginia/06/2011 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395327 A/West Virginia/06/2011 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI395250 A/Indiana/152/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI394936 A/Ohio/75/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI394932 A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI394920 A/Ohio/69/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI394912 A/Indiana/132/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI394905 A/Ohio/62/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI393696 A/Indiana/20/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI393687 A/Ohio/23/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI393666 A/Ohio/28/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI393510 A/Ohio/52/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI393294 A/Ohio/24/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI392677 A/Ohio/13/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI388365 A/Ohio/17/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI388345 A/Indiana/15/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI388338 A/Ohio/16/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI388329 A/Ohio/20/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%) EPI388320 A/Ohio/18/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1335/1358 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824767 A/Michigan/84/2016 (A/H3N2) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI573017 A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%) EPI573003 A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA) 3081.3 0.000000e+00 1690/1701 (99%) EPI600470 A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA) 3077.6 0.000000e+00 1689/1701 (99%) EPI573495 A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%) EPI573486 A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%) EPI573448 A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%) EPI573445 A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA) 3072.1 0.000000e+00 1688/1701 (99%) EPI573602 A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA) 3068.4 0.000000e+00 1687/1701 (99%) EPI573000 A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA) 3068.4 0.000000e+00 1687/1701 (99%) EPI669178 A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA) 3064.7 0.000000e+00 1687/1701 (99%) EPI584802 A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA) 3064.7 0.000000e+00 1687/1701 (99%) EPI685734 A/New Jersey/53/2015 (A/H3N2) segment 4 (HA) 3059.2 0.000000e+00 1686/1701 (99%) EPI678644 A/swine/Ohio/A01795365/2015 (A/H3N2) segment 4 (HA) 3053.6 0.000000e+00 1685/1701 (99%) EPI678347 A/swine/Ohio/A01857766/2015 (A/H3N2) segment 4 (HA) 3053.6 0.000000e+00 1685/1701 (99%) EPI703954 A/swine/Ohio/A01796509/2015 (A/H3N2) segment 4 (HA) 3048.1 0.000000e+00 1684/1701 (99%) EPI703878 A/swine/Ohio/A01895033/2015 (A/H3N2) segment 4 (HA) 3048.1 0.000000e+00 1684/1701 (99%) EPI687608 A/swine/Ohio/A01941023/2015 (A/H3N2) segment 4 (HA) 3048.1 0.000000e+00 1684/1701 (99%) EPI678584 A/swine/Ohio/A01944458/2015 (A/H3N2) segment 4 (HA) 3044.4 0.000000e+00 1683/1701 (98%) EPI704980 A/swine/Ohio/A01727442/2015 (A/H3N2) segment 4 (HA) 3042.6 0.000000e+00 1683/1701 (98%) EPI678350 A/swine/Arkansas/A01857979/2015 (A/H3N2) segment 4 (HA) 3042.6 0.000000e+00 1683/1701 (98%) EPI532373 A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA) 3025.9 0.000000e+00 1680/1701 (98%) EPI711740 A/swine/Indiana/A01729047/2016 (A/H3N2) segment 4 (HA) 3022.2 0.000000e+00 1680/1702 (98%) EPI573807 A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA) 3022.2 0.000000e+00 1679/1701 (98%) EPI542447 A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA) 3020.4 0.000000e+00 1679/1701 (98%) EPI534947 A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA) 3020.4 0.000000e+00 1679/1701 (98%) EPI538664 A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA) 3016.7 0.000000e+00 1678/1701 (98%) EPI533782 A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA) 3016.7 0.000000e+00 1678/1701 (98%) EPI778247 A/swine/North Dakota/A01895932/2016 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI623626 A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI574154 A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI550293 A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI531059 A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI530996 A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI460390 A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA) 3014.9 0.000000e+00 1678/1701 (98%) EPI597655 A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1678/1702 (98%) EPI545416 A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1677/1701 (98%) EPI545407 A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1677/1701 (98%) EPI542551 A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1677/1701 (98%) EPI538670 A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1677/1701 (98%) EPI532376 A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1677/1701 (98%) EPI460381 A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA) 3009.3 0.000000e+00 1677/1701 (98%) EPI597661 A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA) 3005.6 0.000000e+00 1676/1701 (98%) EPI542524 A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA) 3005.6 0.000000e+00 1676/1701 (98%) EPI593956 A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI573350 A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI572994 A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI559548 A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI558839 A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI558834 A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI558819 A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI550296 A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI548259 A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI545840 A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI510214 A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI510211 A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI510199 A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI510190 A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI510173 A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI507284 A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI505102 A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI504864 A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI460387 A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1677/1702 (98%) EPI460372 A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA) 3003.8 0.000000e+00 1676/1701 (98%) EPI542548 A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA) 3000.1 0.000000e+00 1675/1701 (98%) EPI586151 A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI559025 A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI558883 A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI558842 A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI545858 A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI545852 A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI545816 A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI545379 A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI538990 A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI530299 A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI530284 A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI508836 A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA) 2998.2 0.000000e+00 1675/1701 (98%) EPI542474 A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA) 2996.4 0.000000e+00 1672/1698 (98%) EPI573035 A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA) 2994.5 0.000000e+00 1674/1701 (98%) EPI508858 A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA) 2994.5 0.000000e+00 1674/1701 (98%) EPI584808 A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI573793 A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI573599 A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI542563 A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI542542 A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI530309 A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI505062 A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI398672 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA) 2989.0 0.000000e+00 1672/1699 (98%) EPI391413 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA) 2989.0 0.000000e+00 1672/1699 (98%) EPI704595 A/swine/Pennsylvania/A01727958/2015 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI684579 A/swine/North Carolina/A01795709/2015 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI678353 A/swine/North Carolina/A01945823/2015 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI623700 A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI600344 A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI586038 A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI573479 A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI573020 A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI559533 A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI557544 A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI557542 A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI545813 A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI542530 A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI531097 A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1674/1702 (98%) EPI509764 A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI505039 A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA) 2987.2 0.000000e+00 1673/1701 (98%) EPI558851 A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA) 2985.3 0.000000e+00 1671/1699 (98%) EPI620523 A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA) 2983.5 0.000000e+00 1672/1701 (98%) EPI600449 A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA) 2983.5 0.000000e+00 1672/1701 (98%) EPI600431 A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA) 2983.5 0.000000e+00 1672/1701 (98%) EPI396270 A/Indiana/133/2012 (A/H3N2) segment 4 (HA) 2983.5 0.000000e+00 1671/1699 (98%) EPI394913 A/Indiana/132/2012 (A/H3N2) segment 4 (HA) 2983.5 0.000000e+00 1671/1699 (98%) EPI388327 A/Indiana/14/2012 (A/H3N2) segment 4 (HA) 2983.5 0.000000e+00 1671/1699 (98%) EPI678281 A/swine/North Carolina/A01857750/2015 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI669209 A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI623703 A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI598964 A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI584734 A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI573818 A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI557534 A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA) 2981.6 0.000000e+00 1672/1701 (98%) EPI573452 A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1671/1701 (98%) EPI573011 A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1671/1701 (98%) EPI528431 A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI527870 A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI527113 A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI451202 A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI446888 A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI446879 A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI446800 A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI443550 A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI426887 A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI414186 A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI414170 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI408202 A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI406576 A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI406504 A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI404890 A/Iowa/16/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI401609 A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397913 A/Indiana/123/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397906 A/Illinois/11/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397905 A/Hawaii/03/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397662 A/Maryland/28/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397396 A/Indiana/93/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397210 A/Maryland/25/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI397006 A/Ohio/78/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI396262 A/Indiana/127/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI396254 A/Indiana/126/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI395883 A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI395259 A/Ohio/35/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI394944 A/Maryland/22/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI393306 A/Indiana/18/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI392926 A/Maryland/20/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI391404 A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI388352 A/Indiana/20/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI388346 A/Indiana/15/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI388298 A/Indiana/19/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI388282 A/Indiana/13/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI383528 A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI381873 A/Hawaii/03/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI366030 A/Utah/10/2012 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI346493 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 2977.9 0.000000e+00 1670/1699 (98%) EPI760179 A/swine/Pennsylvania/A01733733/2016 (A/H3N2) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%) EPI684572 A/swine/Ohio/A01797012/2015 (A/H3N2) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%) EPI672951 A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%) EPI642513 A/Michigan/39/2015 (A/H3N2) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%) EPI620526 A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%) EPI559530 A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA) 2976.1 0.000000e+00 1671/1701 (98%) EPI678650 A/swine/North Carolina/A01945473/2015 (A/H0) segment 4 (HA) 2974.2 0.000000e+00 1670/1701 (98%) EPI623651 A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1670/1701 (98%) EPI398492 A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1669/1699 (98%) EPI395331 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1669/1699 (98%) EPI395328 A/West Virginia/06/2011 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1669/1699 (98%) EPI647569 A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1670/1701 (98%) EPI573566 A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1670/1700 (98%) EPI509734 A/swine/Iowa/13H075/2013 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI499946 A/swine/Iowa/13H087/2013 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI493012 A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI492349 A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI446927 A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI446919 A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI446863 A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI446830 A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI443558 A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI443526 A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI433540 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI433533 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI433306 A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI433298 A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI424073 A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI414178 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI414156 A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI408199 A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI406530 A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI401702 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI401684 A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI401680 A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI401667 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI400105 A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI398542 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI398534 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI398526 A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI398518 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI398500 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI398479 A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397969 A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397962 A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397954 A/Ohio/85/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397939 A/Ohio/41/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397548 A/Ohio/84/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397540 A/Ohio/56/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397532 A/Ohio/47/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397524 A/Ohio/44/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397516 A/Ohio/36/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397503 A/Indiana/104/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397446 A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397432 A/Ohio/81/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397426 A/Minnesota/15/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397385 A/Indiana/138/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397351 A/Ohio/37/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397340 A/Indiana/150/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI397089 A/Indiana/52/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI396299 A/Maryland/23/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI396280 A/Indiana/144/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI396208 A/Indiana/149/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI396192 A/Ohio/77/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI396183 A/Indiana/77/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI396175 A/Ohio/80/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395874 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395866 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395718 A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395711 A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395357 A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395344 A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395270 A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI395267 A/Ohio/65/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI394937 A/Ohio/75/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI394933 A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI394921 A/Ohio/69/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI394077 A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393914 A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393782 A/Ohio/74/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393702 A/Ohio/64/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393695 A/West Virginia/16/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393681 A/West Virginia/10/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393673 A/Ohio/71/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393519 A/Indiana/65/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393317 A/Ohio/38/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393311 A/West Virginia/09/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393299 A/Indiana/31/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI393298 A/Indiana/21/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%) EPI392748 A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA) 2972.4 0.000000e+00 1669/1699 (98%)

Isolate name: A/Michigan/84/2016 Isolate ID: EPI_ISL_232047 Passage details/history: OR Type: A / H3N2 Lineage: Sample information Collection date: 2016-08-11 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: United States / Michigan Additional location information: Patient age: Gender: Outbreak: Treatment: Specimen source: Institute information Originating lab: Michigan Department of Community Health Sample ID given by the sample provider: CL16-430446 ORIGINAL Address: Michigan Department of Community Health Viral Isolation and Molecular Testing 3350 N. Martin Luther King, Jr. Blvd Lansing, 48909 United States Submitting lab: Centers for Disease Control and Prevention Sample ID given by the submitting laboratory: 3000478560 Authors: Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA 3000478560_4 1701 EPI824767 NA 3000478560_6 1358 EPI824766 Submitter information Submitter: Jang, Yunho Submission Date: 2016-08-19 Last modifier: Jang, Yunho Last modified: 2016-08-19 Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States

Michigan H3N2v sequence, A/Michigan/84/2016, has H3 that matches 2015 New Jersey case and N2 matching 2012 human cases. This constellation is distinct from recently released 2016 human sequences from Michigan and Ohio.

Descriptions Align Segment-ID Name Score E-Value Identity EPI824769 A/Michigan/83/2016 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI824751 A/Ohio/28/2016 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI824743 A/Ohio/27/2016 (A/H3N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI691591 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI596364 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI490781 A/swine/Arkansas/SG1382/2011 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI489144 A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI489102 A/swine/Arkansas/SG1384/2011 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI489088 A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI489074 A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI489067 A/swine/Arkansas/SG1375/2011 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI647599 A/swine/Ohio/A01076765/2010 (A/H1N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI490793 A/swine/Illinois/SG1398/2011 (A/H1N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI490776 A/swine/Arkansas/SG1381/2011 (A/H1N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI490771 A/swine/Arkansas/SG1379/2011 (A/H1N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI489095 A/swine/Arkansas/SG1383/2011 (A/H1N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI489081 A/swine/Arkansas/SG1377/2011 (A/H1N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI615597 A/swine/Illinois/A01134579/2011 (A/H1N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI615425 A/swine/Illinois/A01134578/2011 (A/H1N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI506437 A/swine/Indiana/A00968332/2011 (A/H1N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI489158 A/swine/Indiana/04254/2011 (A/H1N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI459212 A/swine/Illinois/A01134580/2011 (A/H1N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI401699 A/swine/Illinois/A01243094/2012 (A/H1N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI641776 A/swine/North Carolina/A01409423/2013 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI492042 A/swine/Manitoba/02947/2010 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI491912 A/swine/Manitoba/02947/2010 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI488568 A/swine/Minnesota/SG1238/2005 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI414204 A/swine/Illinois/A01076709/2010 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI390743 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI389983 A/swine/Illinois/A01240575/2011 (A/H3N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI376210 A/swine/Ohio/FAH11-1/2010 (A/H1N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI324168 A/SW/MB/5-5/2009 (A/H1N1) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI490448 A/swine/Oklahoma/SG1473/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI490239 A/swine/Manitoba/00446/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI489256 A/swine/Manitoba/01782/2007 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI489214 A/swine/Quebec/01001/2006 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI489186 A/swine/Manitoba/00446/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI488927 A/swine/Georgia/02604/2009 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI488561 A/swine/Minnesota/SG1236/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI451198 A/swine/Ohio/A01116889/2011 (A/H1N2) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI401642 A/swine/Illinois/A01125988/2012 (A/H1N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI354995 A/swine/Minnesota/A01076218/2010 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI653852 A/swine/Illinois/A00857138a/2011 (A/H0) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI653772 A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI610199 A/swine/Indiana/01101/2006 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI584758 A/swine/Minnesota/00584/2005 (A/H1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI531533 A/swine/Nebraska/A01202501/2011 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI492635 A/swine/Illinois/A00843191/2013 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI491980 A/swine/Minnesota/00574/2005 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI491793 A/swine/Minnesota/00574/2005 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI490816 A/swine/Quebec/01003/2006 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI490813 A/swine/Quebec/01002/2006 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI490808 A/swine/Quebec/01000/2006 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI490804 A/swine/Quebec/00729/2005 (A/H3) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI490660 A/swine/Oklahoma/00606/2005 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI489263 A/swine/Manitoba/02182/2008 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI489242 A/swine/Manitoba/01643/2007 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI489235 A/swine/Manitoba/01642/2007 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI489228 A/swine/Manitoba/01179/2006 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI489221 A/swine/Saskatchewan/01114/2006 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 825/839 (98%) EPI488659 A/swine/Minnesota/00991/2006 (A/H1N1) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI391554 A/swine/Illinois/A00857131/2011 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI391514 A/swine/Illinois/A00857134/2011 (A/H0) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI383515 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1471.1 0.000000e+00 824/838 (98%) EPI693775 A/swine/Manitoba/D0095/2012 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI615568 A/swine/Oklahoma/00557/2005 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI610153 A/swine/Minnesota/D09-20853-3/2009 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI531517 A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI507330 A/swine/Illinois/A01427261/2013 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI506481 A/swine/Indiana/A00968358/2012 (A/H1N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI502401 A/swine/Minnesota/A01279807/2012 (A/H1N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI491904 A/swine/Manitoba/02946/2010 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 824/839 (98%) EPI490126 A/swine/Oklahoma/00518/2005 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI489207 A/swine/Alberta/00805/2005 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI489200 A/swine/Alberta/SG1405/2005 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI488575 A/swine/Minnesota/00938/2005 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI488533 A/swine/Oklahoma/00518/2005 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI459166 A/swine/Illinois/A01328594/2012 (A/H1N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI451219 A/swine/Illinois/A01158947/2012 (A/H1N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI407719 A/swine/Korea/VDS3/2009 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI390775 A/swine/Iowa/A01202023/2011 (A/H1N1 pdm09) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI354965 A/swine/Minnesota/A01076196/2010 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI337389 A/swine/Nebraska/00722/2005 (A/H0) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI314675 A/swine/QC/414/2009 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%) EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1465.5 0.000000e+00 823/838 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824768 A/Michigan/83/2016 (A/H3N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI824742 A/Ohio/27/2016 (A/H3N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI596363 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI641731 A/swine/North Carolina/A01410047/2013 (A/H1N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI459163 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI396167 A/Michigan/19/2012 (A/H3N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI467759 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI433541 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI433534 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI414187 A/swine/Indiana/A00968394/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI414179 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI414171 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401714 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401673 A/swine/Ohio/A00138552/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401658 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401624 A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401622 A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401618 A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI401614 A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI398543 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI398535 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI398527 A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI398501 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397963 A/Wisconsin/34/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397955 A/Ohio/88/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397932 A/Ohio/41/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397901 A/Hawaii/03/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397556 A/Wisconsin/29/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397549 A/Ohio/86/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397541 A/Ohio/83/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397533 A/Ohio/56/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397525 A/Ohio/47/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397517 A/Ohio/44/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397510 A/Ohio/36/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397440 A/Wisconsin/31/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397433 A/Wisconsin/30/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397427 A/Ohio/81/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397419 A/Minnesota/15/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397357 A/Ohio/79/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397205 A/Ohio/34/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396285 A/Ohio/57/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396278 A/Indiana/144/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396271 A/Indiana/135/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396247 A/Indiana/126/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396185 A/Ohio/77/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396170 A/Ohio/80/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395949 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395941 A/swine/Indiana/A00968373/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395933 A/swine/Indiana/A00968370/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395884 A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395875 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395867 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395741 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395352 A/Pennsylvania/17/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395345 A/Michigan/20/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395338 A/Wisconsin/28/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395286 A/Illinois/11/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395283 A/Ohio/69/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395271 A/Ohio/75/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395260 A/Ohio/65/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI394926 A/Wisconsin/23/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393775 A/Ohio/74/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393697 A/Ohio/64/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393689 A/West Virginia/16/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393675 A/West Virginia/10/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393312 A/Ohio/38/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393307 A/West Virginia/09/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393300 A/Indiana/18/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI392741 A/Wisconsin/22/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI392728 A/Pennsylvania/13/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI388283 A/Indiana/17/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI388275 A/Indiana/13/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI381866 A/Hawaii/03/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI378516 A/Indiana/09/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI378508 A/Indiana/07/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI378503 A/Indiana/07/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI394070 A/Wisconsin/27/2012 (A/H3N2) segment 5 (NP) 2673.2 0.000000e+00 1480/1497 (98%) EPI694133 A/swine/Kentucky/D0385/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI691590 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI653859 A/swine/Illinois/A00857131/2011 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI653775 A/swine/Illinois/A00857129/2011 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI548337 A/swine/Iowa/A01445629/2013 (A/H1N1) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI509735 A/swine/Iowa/13H075/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI472210 A/swine/Indiana/A01260313/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI468660 A/swine/Ohio/A01349305/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI468627 A/swine/Maryland/A01319694/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI467900 A/swine/Ohio/A01349485/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI467755 A/swine/Iowa/A01244302/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI465358 A/Illinois/03/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI460743 A/Indiana/04/2013 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI451229 A/swine/Ohio/A01208181/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI451223 A/swine/Ohio/A01208180/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI451203 A/swine/Alabama/A01104056/2012 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI433521 A/swine/Iowa/A01267939/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI433501 A/swine/Minnesota/22/2012 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI424074 A/swine/Michigan/A01259003/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI407272 A/Minnesota/18/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI407264 A/Minnesota/18/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI398519 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI398493 A/swine/Maryland/A01104048/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)