niman

Descriptions Align Segment-ID Name Score E-Value Identity EPI824747 A/Ohio/27/2016 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI824773 A/Michigan/83/2016 (A/H3N2) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%) EPI824763 A/Michigan/82/2016 (A/H3N2) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%) EPI824755 A/Ohio/28/2016 (A/H3N2) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI647639 A/swine/Minnesota/A01491955/2014 (A/H1N1) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI669631 A/swine/Iowa/14TOSU10643/2014 (A/H1N1) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI645076 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI645068 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI669373 A/swine/Iowa/14TOSU10638/2014 (A/H1N1) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI691593 A/swine/Iowa/A01478359/2014 (A/H1N1) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI677675 A/Minnesota/46/2015 (A/H1N1) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI584524 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550269 A/swine/Indiana/13TOSU4957/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550262 A/swine/Indiana/13TOSU4629/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550255 A/swine/Indiana/13TOSU4361/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550227 A/swine/Indiana/13TOSU3843/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550197 A/swine/Indiana/13TOSU5926/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550190 A/swine/Indiana/13TOSU3954/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550183 A/swine/Indiana/13TOSU5099/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550176 A/swine/Indiana/13TOSU5922/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550155 A/swine/Indiana/13TOSU3955/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550127 A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550092 A/swine/Indiana/13TOSU5552/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550071 A/swine/Ohio/13TOSU1928/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550036 A/swine/Indiana/13TOSU4944/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550022 A/swine/Ohio/13TOSU1664/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550001 A/swine/Indiana/13TOSU5918/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI549980 A/swine/Indiana/13TOSU4995/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI549973 A/swine/Indiana/13TOSU4336/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI528481 A/swine/Ohio/13TOSU0735/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI528008 A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527996 A/swine/Ohio/13TOSU0736/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527952 A/swine/Indiana/13TOSU0802/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527949 A/swine/Ohio/13TOSU0733/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527915 A/swine/Indiana/13TOSU1157/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527905 A/swine/Indiana/13TOSU1154/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527900 A/swine/Ohio/13TOSU1958/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527867 A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527210 A/swine/Ohio/13TOSU1522/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527166 A/swine/Ohio/13TOSU1529/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527126 A/swine/Indiana/13TOSU0680/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527119 A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527081 A/swine/Ohio/13TOSU2115/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527037 A/swine/Ohio/13TOSU1948/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI526995 A/swine/Indiana/13TOSU0675/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI526989 A/swine/Indiana/13TOSU1148/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI526907 A/swine/Indiana/13TOSU1159/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI526905 A/swine/Indiana/13TOSU0796/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI471100 A/Arkansas/14/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI464868 A/Ohio/05/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI459228 A/swine/Iowa/A01328941/2012 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI397323 A/swine/Minnesota/4/2012 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI653976 A/swine/South Dakota/23/2012 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550241 A/swine/Indiana/13TOSU5885/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550234 A/swine/Indiana/13TOSU3980/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550211 A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550204 A/swine/Indiana/13TOSU5708/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550162 A/swine/Indiana/13TOSU3616/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550141 A/swine/Indiana/13TOSU3984/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550120 A/swine/Indiana/13TOSU3603/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550106 A/swine/Indiana/13TOSU5671/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550085 A/swine/Indiana/13TOSU5675/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550050 A/swine/Indiana/13TOSU3913/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550015 A/swine/Indiana/13TOSU4194/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI549994 A/swine/Indiana/13TOSU5925/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI549966 A/swine/Indiana/13TOSU3915/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI528002 A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI527950 A/swine/Ohio/13TOSU1674/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI527910 A/swine/Indiana/13TOSU1051/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI527877 A/swine/Indiana/13TOSU0815/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI527213 A/swine/Indiana/13TOSU0820/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI527122 A/swine/Ohio/13TOSU2106/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI526947 A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI459177 A/swine/Iowa/A01432034/2012 (A/H1N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI603626 A/swine/Iowa/A01049949/2011 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI584431 A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI550043 A/swine/Indiana/13TOSU3988/2013 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI544926 A/swine/Iowa/13H098/2013 (A/H3N2) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI538967 A/swine/Iowa/13H076/2013 (A/H3N2) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI527926 A/swine/Indiana/13TOSU0782/2013 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI482783 A/Arkansas/15/2013 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI538981 A/swine/Iowa/13H092/2013 (A/H3N2) segment 2 (PB1) 3997.3 0.000000e+00 2237/2274 (98%) EPI691563 A/swine/Iowa/A02077588/2015 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI602596 A/swine/Iowa/A01202049/2011 (A/H1N1 pdm09) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI589186 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI526945 A/swine/Indiana/13TOSU1316/2013 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI459087 A/swine/Minnesota/A01271731/2012 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI441155 A/swine/California/A00968789/2013 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI589897 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI538974 A/swine/Iowa/13H073/2013 (A/H3N2) segment 2 (PB1) 3989.9 0.000000e+00 2237/2275 (98%) EPI538960 A/swine/Iowa/13H065/2013 (A/H3N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI507416 A/swine/Illinois/A01427335/2013 (A/H1N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI493629 A/swine/Iowa/13E088/2013 (A/H1N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI465151 A/swine/Minnesota/A00907733/2011 (A/H3N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI459219 A/swine/Minnesota/A01270355/2012 (A/H1N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI459138 A/swine/Minnesota/A01279213/2012 (A/H1N1) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI603621 A/swine/Iowa/A01202087/2011 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2236/2275 (98%) EPI585131 A/swine/Minnesota/A01134221/2011 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI584886 A/swine/Minnesota/A01134236/2011 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI615598 A/swine/Iowa/A01202444/2011 (A/H1N2) segment 2 (PB1) 3978.8 0.000000e+00 2235/2275 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824754 A/Ohio/28/2016 (A/H3N2) segment 1 (PB2) 4181.9 0.000000e+00 2264/2264 (100%) EPI824746 A/Ohio/27/2016 (A/H3N2) segment 1 (PB2) 4181.9 0.000000e+00 2264/2264 (100%) EPI824772 A/Michigan/83/2016 (A/H3N2) segment 1 (PB2) 4176.4 0.000000e+00 2263/2264 (99%) EPI824762 A/Michigan/82/2016 (A/H3N2) segment 1 (PB2) 4172.7 0.000000e+00 2262/2264 (99%) EPI467756 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%) EPI468742 A/swine/Illinois/A01432127/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI446883 A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI446875 A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI446859 A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI446826 A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI401654 A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI398539 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI398531 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI398523 A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI398001 A/Ohio/84/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI397967 A/Wisconsin/34/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI397680 A/Wisconsin/31/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI397679 A/Wisconsin/29/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI397678 A/Ohio/86/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI396189 A/Ohio/77/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI395953 A/swine/Indiana/A00968379/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI395871 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI395863 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI394946 A/Ohio/64/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI394074 A/Wisconsin/27/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI393779 A/Ohio/74/2012 (A/H3N2) segment 1 (PB2) 4049.0 0.000000e+00 2240/2264 (98%) EPI397683 A/Ohio/57/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI414175 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI401712 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI401656 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI398035 A/Ohio/69/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI398002 A/Ohio/88/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI397995 A/Hawaii/03/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI397675 A/Ohio/79/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI397537 A/Ohio/56/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI397437 A/Wisconsin/30/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI396267 A/Indiana/133/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI395945 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI395937 A/swine/Indiana/A00968373/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI395737 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI395274 A/Ohio/75/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI394934 A/Ohio/23/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI394930 A/Wisconsin/23/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI394910 A/Indiana/132/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI392753 A/Indiana/14/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI392745 A/Wisconsin/22/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI392732 A/Pennsylvania/13/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI378520 A/Indiana/09/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI378512 A/Indiana/07/2012 (A/H3N2) segment 1 (PB2) 4043.4 0.000000e+00 2239/2264 (98%) EPI397676 A/Ohio/80/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397423 A/Minnesota/15/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI467752 A/swine/Iowa/A01244302/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI451220 A/swine/Ohio/A01208180/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI451199 A/swine/Alabama/A01104056/2012 (A/H0) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI443538 A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI443530 A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI443514 A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI443506 A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI424070 A/swine/Michigan/A01259003/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI401612 A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI398036 A/Ohio/19/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI397996 A/Ohio/17/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI397748 A/Ohio/87/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI397674 A/Ohio/63/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI397545 A/Ohio/83/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI397338 A/Illinois/11/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI396184 A/Pennsylvania/17/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI396169 A/Wisconsin/28/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI395924 A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI395916 A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI395878 A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI395855 A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI394915 A/Ohio/28/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI394904 A/Ohio/62/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI393674 A/Ohio/15/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI393508 A/Ohio/52/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI393293 A/Ohio/16/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI393292 A/Ohio/14/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI392749 A/Ohio/20/2012 (A/H3N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI397998 A/Ohio/18/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI392931 A/Minnesota/11/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2234/2259 (98%) EPI381870 A/Hawaii/03/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2234/2259 (98%) EPI378507 A/Indiana/07/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2234/2259 (98%) EPI694174 A/swine/Kentucky/D0385/2013 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI550133 A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI493685 A/swine/Iowa/13E045/2013 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI446923 A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI446915 A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI446867 A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI446834 A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI446796 A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI443554 A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI443546 A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI443522 A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI433518 A/swine/Iowa/A01267939/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI433302 A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI433294 A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI398515 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI398497 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%) EPI397999 A/Ohio/37/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2237/2264 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824744 A/Ohio/27/2016 (A/H3N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI824770 A/Michigan/83/2016 (A/H3N2) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI736810 A/swine/Iowa/A01730123/2016 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI813573 A/swine/Iowa/A01775848/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI806659 A/swine/Iowa/A01776136/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI760193 A/swine/Iowa/A01733867/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI760175 A/swine/Iowa/A01733965/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI711745 A/swine/North Carolina/A01728953/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI703980 A/swine/Iowa/A01796498/2015 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI703779 A/swine/Iowa/A01797426/2015 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI687602 A/swine/Minnesota/A01941094/2015 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI620474 A/swine/Iowa/A01847868/2015 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI593909 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI573494 A/swine/Missouri/A01840170/2014 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI573474 A/swine/Missouri/A01840163/2014 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI824760 A/Michigan/82/2016 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 969/970 (99%) EPI704591 A/swine/Iowa/A01728010/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI612497 A/swine/Missouri/A01847626/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI824752 A/Ohio/28/2016 (A/H3N2) segment 7 (MP) 1785.0 0.000000e+00 968/969 (99%) EPI760253 A/swine/Minnesota/A01676585/2016 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI703871 A/swine/Illinois/A01796457/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI703773 A/swine/Missouri/A01798099/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI684578 A/swine/Missouri/A01795668/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI678556 A/swine/Iowa/A01944136/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI641407 A/swine/Missouri/A01822838/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI612531 A/swine/Missouri/A01554556/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI653899 A/swine/Missouri/A01770005/2015 (A/H3N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI590778 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI623662 A/swine/Iowa/A02077646/2015 (A/H3N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI559562 A/swine/Iowa/A01476500/2013 (A/H3N1) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI534889 A/swine/USA/2013028053/2013 (A/H3N1) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI559547 A/swine/Missouri/A01476458/2013 (A/H3N1) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI559511 A/swine/Iowa/A01476471/2014 (A/H3N1) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI573050 A/swine/Iowa/A01555108/2014 (A/H3N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI559520 A/swine/Iowa/A01476696/2014 (A/H3N1) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI663551 A/swine/Illinois/A01203923/2012 (A/H1N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI559574 A/swine/Iowa/A01476501/2014 (A/H3N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI559505 A/swine/Iowa/A01476697/2014 (A/H3N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI534892 A/swine/USA/2014001372/2014 (A/H3N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI406547 A/swine/Illinois/A01203922/2012 (A/H1N1) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI559592 A/swine/Missouri/A01476459/2012 (A/H3N2) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI743968 A/Cambodia/W1023349/2012 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI405701 A/Viet Nam/12032005/2009 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI384276 A/swine/Illinois/A01076954/2010 (A/H1N2) segment 7 (MP) 1709.3 0.000000e+00 961/979 (98%) EPI338513 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI332028 A/District of Columbia/INS527/2010 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI324826 A/swine/Iowa/A01049239/2010 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI310140 A/Vietnam/57/2010 (A/H1N1 pdm09) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI308288 A/Cape May/WRAIR1653P/2009 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI308176 A/New Jersey/WRAIR1504P/2009 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI308136 A/New Jersey/WRAIR1499P/2009 (A/H1N1) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI258189 A/Guangxi-Longan/SWL11023/2010 (A/H1N1 pdm09) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI240323 A/Florida/31/2009 (A/H1N1 pdm09) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI692883 A/England/00380719/2010 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI635061 A/Singapore/DMS78/2010 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI590133 A/Dundgobi/381/2010 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI559297 A/swine/Minnesota/36-1008/2010 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI559289 A/swine/Minnesota/36-1005/2010 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI559265 A/swine/Minnesota/36-1020/2010 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI559263 A/swine/Minnesota/36-1026/2010 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI559259 A/swine/Minnesota/36-1012/2010 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI544916 A/canine/Korea/VC125678/2012 (A/H3N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI544909 A/canine/Korea/VC123578/2012 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI544902 A/canine/Korea/VC378/2012 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI537971 A/North Dakota/20/2009 (A/H1N1 pdm09) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI509534 A/swine/Iowa/A01410129/2014 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI476500 A/swine/Iowa/A01432991/2013 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI471745 A/swine/Thailand/LB160/2010 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI471737 A/swine/Thailand/LB159/2010 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI471721 A/swine/Thailand/LB158/2010 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI471697 A/swine/Thailand/LB164/2010 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI460108 A/canine/Korea/MV1/2012 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI457519 A/swine/Kansas/13-108011/2013 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI441634 A/swine/Minnesota/A01445762/2013 (A/H1N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI434565 A/swine/Pennsylvania/a01076503/2010 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI434557 A/swine/Pennsylvania/a01076502/2010 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405733 A/Viet Nam/001-1889/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405717 A/Viet Nam/001-1716/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405709 A/Viet Nam/001-1424/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405677 A/Viet Nam/11032017/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405653 A/Viet Nam/11032006/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405645 A/Viet Nam/11032001/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405562 A/Viet Nam/13032074/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405554 A/Viet Nam/13032071/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405540 A/Viet Nam/13032060/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405524 A/Viet Nam/13032051/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405508 A/Viet Nam/13032044/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405500 A/Viet Nam/13032040/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405476 A/Viet Nam/13032035/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405453 A/Viet Nam/13032016/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405437 A/Viet Nam/13032011/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405429 A/Viet Nam/13032009/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405421 A/Viet Nam/13032008/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405405 A/Viet Nam/13032001/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI405320 A/Viet Nam/001-1890/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI404197 A/Viet Nam/15032002/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI399552 A/swine/Minnesota/A01300999/2012 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI399490 A/swine/Minnesota/A01301000/2012 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI398128 A/swine/Iowa/A01203809/2012 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI392378 A/Scotland/Paisley_413960/2009 (A/H1N1) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824748 A/Ohio/27/2016 (A/H3N2) segment 6 (NA) 2518.1 0.000000e+00 1363/1363 (100%) EPI824774 A/Michigan/83/2016 (A/H3N2) segment 6 (NA) 2507.0 0.000000e+00 1361/1363 (99%) EPI824764 A/Michigan/82/2016 (A/H3N2) segment 6 (NA) 2505.2 0.000000e+00 1358/1359 (99%) EPI760192 A/swine/Iowa/A01733867/2016 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1356/1363 (99%) EPI711744 A/swine/North Carolina/A01728953/2016 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1356/1363 (99%) EPI704590 A/swine/Iowa/A01728010/2015 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1356/1363 (99%) EPI824756 A/Ohio/28/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1341/1342 (99%) EPI813572 A/swine/Iowa/A01775848/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1355/1363 (99%) EPI806654 A/swine/Iowa/A01776136/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1355/1363 (99%) EPI760174 A/swine/Iowa/A01733965/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1355/1363 (99%) EPI703979 A/swine/Iowa/A01796498/2015 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1355/1363 (99%) EPI687601 A/swine/Minnesota/A01941094/2015 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1355/1363 (99%) EPI760254 A/swine/Minnesota/A01676585/2016 (A/H3N2) segment 6 (NA) 2468.2 0.000000e+00 1354/1363 (99%) EPI703778 A/swine/Iowa/A01797426/2015 (A/H3N2) segment 6 (NA) 2468.2 0.000000e+00 1354/1363 (99%) EPI736809 A/swine/Iowa/A01730123/2016 (A/H1N2) segment 6 (NA) 2462.7 0.000000e+00 1353/1363 (99%) EPI682718 A/swine/Illinois/A01795739/2015 (A/H3N2) segment 6 (NA) 2462.7 0.000000e+00 1353/1363 (99%) EPI718288 A/swine/Iowa/A01729570/2016 (A/H3N2) segment 6 (NA) 2457.2 0.000000e+00 1352/1363 (99%) EPI813533 A/swine/Iowa/A01775597/2016 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1350/1363 (99%) EPI778234 A/swine/Iowa/A01895860/2016 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1350/1363 (99%) EPI682710 A/swine/Iowa/A01795441/2015 (A/H0) segment 6 (NA) 2446.1 0.000000e+00 1350/1363 (99%) EPI492971 A/swine/Iowa/A01394642/2013 (A/H1N2) segment 6 (NA) 2446.1 0.000000e+00 1350/1363 (99%) EPI532371 A/swine/Iowa/A01410694/2014 (A/H1N2) segment 6 (NA) 2440.5 0.000000e+00 1349/1363 (98%) EPI600339 A/swine/Minnesota/A01555013/2014 (A/H1N2) segment 6 (NA) 2435.0 0.000000e+00 1348/1363 (98%) EPI505054 A/swine/Iowa/A01410020/2013 (A/H1N2) segment 6 (NA) 2435.0 0.000000e+00 1348/1363 (98%) EPI438207 A/swine/Virginia/A01432419/2013 (A/H1N2) segment 6 (NA) 2429.5 0.000000e+00 1347/1363 (98%) EPI531015 A/swine/Iowa/A01410614/2014 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1343/1363 (98%) EPI600444 A/swine/Iowa/A01476969/2014 (A/H0) segment 6 (NA) 2401.8 0.000000e+00 1342/1363 (98%) EPI597638 A/swine/Iowa/A01476860/2014 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1342/1363 (98%) EPI489142 A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1342/1363 (98%) EPI489072 A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1342/1363 (98%) EPI384372 A/swine/Ohio/A01076765/2010 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1342/1363 (98%) EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1342/1363 (98%) EPI612730 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI600304 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI506435 A/swine/Indiana/A00968332/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI489086 A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI406615 A/swine/Illinois/A01270490/2012 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI398673 A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI384613 A/swine/Illinois/A01116186/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1341/1363 (98%) EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2394.4 0.000000e+00 1340/1362 (98%) EPI615423 A/swine/Illinois/A01134578/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI600402 A/swine/Iowa/A01476914/2014 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI559398 A/swine/Indiana/28-0202/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI559388 A/swine/Indiana/28-0210/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI559340 A/swine/Indiana/28-0410/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI559314 A/swine/Indiana/28-0415/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI559310 A/swine/Indiana/28-0419/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI559298 A/swine/Indiana/28-0223/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI490779 A/swine/Arkansas/SG1382/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI490769 A/swine/Arkansas/SG1379/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI489156 A/swine/Indiana/04254/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI489079 A/swine/Arkansas/SG1377/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI489065 A/swine/Arkansas/SG1375/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI415290 A/swine/Ohio/11SW87/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI399610 A/swine/Pennsylvania/A01076779/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI399563 A/swine/Pennsylvania/A01076777/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI399461 A/swine/Illinois/A01300356/2012 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI395981 A/swine/Virginia/A01203711/2012 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI390950 A/swine/Ohio/A01049357/2010 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI384578 A/swine/Illinois/A01116719/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI384530 A/swine/Illinois/A01134851/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI384527 A/swine/Illinois/A01201430/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI384491 A/swine/Ohio/A01116888/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI384424 A/swine/Illinois/A00907727/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI376208 A/swine/Ohio/FAH11-1/2010 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI371681 A/swine/Ohio/A01116890/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI369160 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI369159 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI369156 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1340/1363 (98%) EPI669267 A/swine/Minnesota/A01940176/2015 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1339/1363 (98%) EPI653871 A/swine/Illinois/A00857134/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI653860 A/swine/Illinois/A00857131/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI653771 A/swine/Illinois/A00857129/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI615595 A/swine/Illinois/A01134579/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI559278 A/swine/Indiana/28-0403/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI489100 A/swine/Arkansas/SG1384/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI415678 A/swine/Ohio/11SW195/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI415266 A/swine/Ohio/11SW115/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI401368 A/swine/Minnesota/A01203677/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI401173 A/swine/Illinois/A01270461/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1340/1364 (98%) EPI401110 A/swine/Illinois/A01301847/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1340/1364 (98%) EPI399005 A/swine/Illinois/A01125988/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI398879 A/swine/Illinois/A01301474/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1340/1364 (98%) EPI398560 A/swine/Illinois/A01301838/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1340/1364 (98%) EPI398506 A/swine/Illinois/A01270167/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI391418 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI391384 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI391128 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI391122 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI390782 A/swine/Minnesota/A01076122/2010 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%) EPI384551 A/swine/Illinois/A01134656/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1339/1363 (98%)

5 References 1 Mlakar J, Korva M, Tul N, et al. Zika virus associated with microcephaly. N Engl J Med 2016;374:951-958 Free Full Text | Web of Science | Medline 2 Sarno M, Sacramento GA, Khouri R, et al. Zika virus infection and stillbirths: a case of hydrops fetalis, hydranencephaly and fetal demise. PLoS Negl Trop Dis2016;10:e0004517-e0004517 CrossRef | Web of Science 3 Martines RB, Bhatnagar J, Keating MK, et al. Evidence of Zika virus infection in brain and placental tissues from two congenitally infected newborns and two fetal losses — Brazil, 2015. MMWR Morb Mortal Wkly Rep 2016;65:159-160 CrossRef | Web of Science | Medline 4 McCarthy M. Zika virus was transmitted by sexual contact in Texas, health officials report. BMJ 2016;352:i720-i720 CrossRef | Web of Science | Medline 5 D’Ortenzio E, Matheron S, de Lamballerie X, et al. Evidence of sexual transmission of Zika virus. N Engl J Med 2016;374:2195-2198 Free Full Text | Medline

To the Editor: The presence of Zika virus (ZIKV) infection has been associated with microcephaly in multiple studies,1-3 although little is known about ZIKV shedding in congenitally infected infants. We report a case of a newborn who had continued viremia with ZIKV for at least 67 days after birth. On January 2, 2016, a male child was born with microcephaly in São Paulo, Brazil, at 40 weeks of gestation to a mother who had reported having symptoms associated with ZIKV infection during the 26th week of pregnancy. At birth, the weight was 3095 g, the length 48 cm, and the head circumference 32.5 cm. The neurologic abnormality was not detected during an initial physical examination. An analysis of cerebrospinal fluid and ophthalmologic and otoacoustic evaluations were normal. Magnetic resonance imaging (MRI) showed a reduced brain parenchyma, notably in the frontal and parietal lobes, foci of calcification in the subcortical area, and compensatory dilatation of the infratentorial supraventricular system (Figure 1FIGURE 1Clinical Timeline and Tomographic Findings in an Infant with Congenital ZIKV Infection.). At day 54, serum, saliva, and urine were tested for ZIKV on quantitative real-time polymerase-chain-reaction (qRT-PCR) assay. All three assays were positive for ZIKV RNA, with 1.4×105 copies per milliliter in the serum, 4.1×104 in the saliva, and 5.4×103 in the urine. (Details of all analyses are provided in the Methods section in the Supplementary Appendix, available with the full text of this letter at NEJM.org.) RNA sequencing of a urine sample obtained from the infant showed a high degree of similarity with samples isolated in the Americas with 98.5% bootstrap support (Fig. S3 in the Supplementary Appendix). ZIKV-specific IgM and IgG were positive as well. On day 67, ZIKV RNA in the serum continued to be detected on qRT-PCR, with 2.8×104 copies per milliliter. On day 216, ZIKV RNA was no longer detected in the serum on qRT-PCR; the ZIKV-specific IgG titer was high (>320) in comparison with the first and second samples (average titer, <99). When the infant was examined on day 54, he had no obvious illness or evidence of any immunocompromising condition. However, by 6 months of age, he showed neuropsychomotor developmental delay, with global hypertonia and spastic hemiplegia, with the right dominant side more severely affected. During the third trimester of pregnancy, the infant’s mother had presented with fever, pruritic maculopapular rash, headache, conjunctival hyperemia, and swelling and pain in the joints of the hands and feet at 26 weeks of gestation; all the symptoms had resolved spontaneously. Although the mother had not left the city of São Paulo during the pregnancy, it was suspected that ZIKV could have been sexually transmitted from the father, who had traveled to the northeast region of Brazil (state of Paraíba) and reported having had the same symptoms as the mother 3 weeks before the onset of her symptoms. Recently, some cases of sexual transmission of ZIKV have been reported but none in pregnant women.4,5 Samples obtained from the mother and father at days 59 and 67 were positive for ZIKV-specific IgG and negative for IgM. As shown in the timeline of events in this case in Figure 1, ZIKV infection persisted in a congenitally infected newborn for more than 2 months.

Danielle B.L. Oliveira, Ph.D. Universidade de São Paulo, São Paulo, Brazil Flávia J. Almeida, M.D., Ph.D. Irmandade da Santa Casa de Misericórdia de São Paulo, São Paulo, Brazil Edison L. Durigon, Ph.D. Érica A. Mendes, Ph.D. Carla T. Braconi, Ph.D. Universidade de São Paulo, São Paulo, Brazil [email protected] Ivan Marchetti, M.D. Irmandade da Santa Casa de Misericórdia de São Paulo, São Paulo, Brazil Robert Andreata-Santos, B.Sc. Marielton P. Cunha, M.Sc. Rúbens P.S. Alves, M.Sc. Lennon R. Pereira, M.Sc. Stella R. Melo, B.M.V. Daniel F.L. Neto, Ph.D. Flávio S. Mesquita Universidade de São Paulo, São Paulo, Brazil Danielle B. Araujo, M.V., Ph.D. Silvana R. Favoretto, Ph.D. Instituto Pasteur de São Paulo, São Paulo, Brazil Marco A.P. Sáfadi, M.D., Ph.D. Irmandade da Santa Casa de Misericórdia de São Paulo, São Paulo, Brazil Luís C.S. Ferreira, Ph.D. Paolo M.A. Zanotto, Ph.D. Universidade de São Paulo, São Paulo, Brazil Viviane F. Botosso, Ph.D. Instituto Butantan, São Paulo, Brazil Eitan N. Berezin, M.D., Ph.D. Irmandade da Santa Casa de Misericórdia de São Paulo, São Paulo, Brazil Supported by the Fundação de Amparo à Pesquisa do Estado de São Paulo. Disclosure forms provided by the authors are available with the full text of this letter at NEJM.org. Drs. Oliveira, Almeida, Mendes, and Braconi, and Drs. Durigon, Botosso, and Berezin, contributed equally to this letter. This letter was published on August 24, 2016, at NEJM.org.

Prolonged Shedding of Zika Virus Associated with Congenital Infection August 24, 2016DOI: 10.1056/NEJMc1607583 http://www.nejm.org/doi/full/10.1056/NEJMc1607583?query=featured_home

Descriptions Align Segment-ID Name Score E-Value Identity EPI824749 A/Ohio/27/2016 (A/H3N2) segment 4 (HA) 3123.8 0.000000e+00 1693/1693 (100%) EPI824775 A/Michigan/83/2016 (A/H3N2) segment 4 (HA) 3118.3 0.000000e+00 1691/1693 (99%) EPI824757 A/Ohio/28/2016 (A/H3N2) segment 4 (HA) 3118.3 0.000000e+00 1691/1693 (99%) EPI612507 A/swine/Iowa/A02076444/2015 (A/H0) segment 4 (HA) 3112.7 0.000000e+00 1690/1693 (99%) EPI687600 A/swine/Minnesota/A01941094/2015 (A/H3N2) segment 4 (HA) 3107.2 0.000000e+00 1689/1693 (99%) EPI620472 A/swine/Iowa/A01847868/2015 (A/H3N2) segment 4 (HA) 3107.2 0.000000e+00 1689/1693 (99%) EPI573472 A/swine/Missouri/A01840163/2014 (A/H3N2) segment 4 (HA) 3103.5 0.000000e+00 1688/1693 (99%) EPI778161 A/swine/Minnesota/A01677360/2016 (A/H3N2) segment 4 (HA) 3101.6 0.000000e+00 1688/1693 (99%) EPI703978 A/swine/Iowa/A01796498/2015 (A/H3N2) segment 4 (HA) 3101.6 0.000000e+00 1688/1693 (99%) EPI682712 A/swine/Iowa/A01795441/2015 (A/H0) segment 4 (HA) 3101.6 0.000000e+00 1688/1693 (99%) EPI593907 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 4 (HA) 3101.6 0.000000e+00 1688/1693 (99%) EPI573492 A/swine/Missouri/A01840170/2014 (A/H3N2) segment 4 (HA) 3101.6 0.000000e+00 1688/1693 (99%) EPI711743 A/swine/North Carolina/A01728953/2016 (A/H3N2) segment 4 (HA) 3096.1 0.000000e+00 1687/1693 (99%) EPI703777 A/swine/Iowa/A01797426/2015 (A/H3N2) segment 4 (HA) 3096.1 0.000000e+00 1687/1693 (99%) EPI612495 A/swine/Missouri/A01847626/2015 (A/H3N2) segment 4 (HA) 3096.1 0.000000e+00 1687/1693 (99%) EPI590787 A/swine/Missouri/A02076058/2015 (A/H3N2) segment 4 (HA) 3092.4 0.000000e+00 1686/1693 (99%) EPI718287 A/swine/Iowa/A01729570/2016 (A/H3N2) segment 4 (HA) 3090.6 0.000000e+00 1686/1693 (99%) EPI704589 A/swine/Iowa/A01728010/2015 (A/H3N2) segment 4 (HA) 3090.6 0.000000e+00 1686/1693 (99%) EPI760252 A/swine/Minnesota/A01676585/2016 (A/H3N2) segment 4 (HA) 3085.0 0.000000e+00 1685/1693 (99%) EPI684601 A/swine/Iowa/A01944889/2015 (A/H0) segment 4 (HA) 3085.0 0.000000e+00 1685/1693 (99%) EPI684577 A/swine/Missouri/A01795668/2015 (A/H3N2) segment 4 (HA) 3085.0 0.000000e+00 1685/1693 (99%) EPI682717 A/swine/Illinois/A01795739/2015 (A/H3N2) segment 4 (HA) 3085.0 0.000000e+00 1685/1693 (99%) EPI590779 A/swine/Missouri/A01554320/2015 (A/H0) segment 4 (HA) 3085.0 0.000000e+00 1685/1693 (99%) EPI813583 A/swine/Minnesota/A01677935/2016 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI813532 A/swine/Iowa/A01775597/2016 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI760191 A/swine/Iowa/A01733867/2016 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI760173 A/swine/Iowa/A01733965/2016 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI704977 A/swine/Iowa/A01727249/2015 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI653896 A/swine/Missouri/A01770005/2015 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI641405 A/swine/Missouri/A01822838/2015 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI590776 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 4 (HA) 3079.5 0.000000e+00 1684/1693 (99%) EPI778233 A/swine/Iowa/A01895860/2016 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1683/1693 (99%) EPI612529 A/swine/Missouri/A01554556/2015 (A/H3N2) segment 4 (HA) 3075.8 0.000000e+00 1683/1693 (99%) EPI813571 A/swine/Iowa/A01775848/2016 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1683/1693 (99%) EPI806649 A/swine/Iowa/A01776136/2016 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1683/1693 (99%) EPI704891 A/swine/Minnesota/A01941510/2015 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1683/1693 (99%) EPI703927 A/swine/Ohio/A01798226/2015 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1681/1690 (99%) EPI703911 A/swine/Arkansas/A01798224/2015 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1681/1690 (99%) EPI684571 A/swine/Arkansas/A01797067/2015 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1681/1690 (99%) EPI678578 A/swine/Arkansas/A01945350/2015 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1681/1690 (99%) EPI678300 A/swine/Arkansas/A01945580/2015 (A/H3N2) segment 4 (HA) 3073.9 0.000000e+00 1681/1690 (99%) EPI703771 A/swine/Missouri/A01798099/2015 (A/H3N2) segment 4 (HA) 3070.3 0.000000e+00 1682/1693 (99%) EPI684587 A/swine/Arkansas/A01797066/2015 (A/H3N2) segment 4 (HA) 3068.4 0.000000e+00 1680/1690 (99%) EPI623660 A/swine/Iowa/A02077646/2015 (A/H3N2) segment 4 (HA) 3064.7 0.000000e+00 1681/1693 (99%) EPI736635 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 4 (HA) 3062.9 0.000000e+00 1679/1690 (99%) EPI709871 A/swine/Ohio/A01728296/2015 (A/H3N2) segment 4 (HA) 3062.9 0.000000e+00 1679/1690 (99%) EPI682811 A/swine/Ohio/A01795737/2015 (A/H3N2) segment 4 (HA) 3062.9 0.000000e+00 1679/1690 (99%) EPI678554 A/swine/Iowa/A01944136/2015 (A/H3N2) segment 4 (HA) 3057.3 0.000000e+00 1680/1693 (99%) EPI703869 A/swine/Illinois/A01796457/2015 (A/H3N2) segment 4 (HA) 3051.8 0.000000e+00 1679/1693 (99%) EPI682820 A/swine/Indiana/A01796207/2015 (A/H3N2) segment 4 (HA) 3051.8 0.000000e+00 1677/1690 (99%) EPI559560 A/swine/Iowa/A01476500/2013 (A/H3N1) segment 4 (HA) 3046.2 0.000000e+00 1678/1693 (99%) EPI559545 A/swine/Missouri/A01476458/2013 (A/H3N1) segment 4 (HA) 3046.2 0.000000e+00 1678/1693 (99%) EPI534887 A/swine/USA/2013028053/2013 (A/H3N1) segment 4 (HA) 3046.2 0.000000e+00 1678/1693 (99%) EPI559572 A/swine/Iowa/A01476501/2014 (A/H3N1) segment 4 (HA) 3035.2 0.000000e+00 1676/1693 (98%) EPI559503 A/swine/Iowa/A01476697/2014 (A/H3N1) segment 4 (HA) 3035.2 0.000000e+00 1676/1693 (98%) EPI778307 A/swine/Missouri/A01943095/2016 (A/H3N1) segment 4 (HA) 3024.1 0.000000e+00 1674/1693 (98%) EPI600443 A/swine/Iowa/A01476969/2014 (A/H0) segment 4 (HA) 3024.1 0.000000e+00 1674/1693 (98%) EPI534890 A/swine/USA/2014001372/2014 (A/H3N1) segment 4 (HA) 3014.9 0.000000e+00 1672/1693 (98%) EPI600401 A/swine/Iowa/A01476914/2014 (A/H3N2) segment 4 (HA) 3007.5 0.000000e+00 1671/1693 (98%) EPI600303 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 4 (HA) 3007.5 0.000000e+00 1671/1693 (98%) EPI559509 A/swine/Iowa/A01476471/2014 (A/H3N1) segment 4 (HA) 3001.9 0.000000e+00 1670/1693 (98%) EPI612729 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 4 (HA) 2996.4 0.000000e+00 1669/1693 (98%) EPI669266 A/swine/Minnesota/A01940176/2015 (A/H3N2) segment 4 (HA) 2985.3 0.000000e+00 1667/1693 (98%) EPI778427 A/swine/Minnesota/A01943266/2016 (A/H3N2) segment 4 (HA) 2979.8 0.000000e+00 1667/1694 (98%) EPI704873 A/swine/Iowa/A01941549/2015 (A/H3N2) segment 4 (HA) 2979.8 0.000000e+00 1666/1693 (98%) EPI687605 A/swine/Iowa/A01941182/2015 (A/H3N2) segment 4 (HA) 2979.8 0.000000e+00 1666/1693 (98%) EPI778430 A/swine/Minnesota/A01943420/2016 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1666/1694 (98%) EPI736681 A/swine/Minnesota/A01942171/2016 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1665/1693 (98%) EPI711697 A/swine/Minnesota/A01941676/2015 (A/H3N2) segment 4 (HA) 2974.2 0.000000e+00 1665/1693 (98%) EPI778292 A/swine/Iowa/A01943075/2016 (A/H3N2) segment 4 (HA) 2968.7 0.000000e+00 1664/1693 (98%) EPI711709 A/swine/Minnesota/A01941693/2015 (A/H3N2) segment 4 (HA) 2968.7 0.000000e+00 1664/1693 (98%) EPI711700 A/swine/Minnesota/A01941831/2015 (A/H3N2) segment 4 (HA) 2968.7 0.000000e+00 1664/1693 (98%) EPI703852 A/swine/Iowa/A01896071/2015 (A/H0) segment 4 (HA) 2963.1 0.000000e+00 1663/1693 (98%) EPI559518 A/swine/Iowa/A01476696/2014 (A/H3N1) segment 4 (HA) 2963.1 0.000000e+00 1663/1693 (98%) EPI711737 A/swine/Iowa/A01728956/2016 (A/H3N2) segment 4 (HA) 2942.8 0.000000e+00 1659/1693 (97%) EPI559590 A/swine/Missouri/A01476459/2012 (A/H3N2) segment 4 (HA) 2918.8 0.000000e+00 1656/1694 (97%) EPI302243 A/South Dakota/02/2010 (A/H3N2) segment 4 (HA) 2896.7 0.000000e+00 1652/1694 (97%) EPI301766 A/South Dakota/02/2010 (A/H3N2) segment 4 (HA) 2896.7 0.000000e+00 1652/1694 (97%) EPI573048 A/swine/Iowa/A01555108/2014 (A/H3N1) segment 4 (HA) 2894.8 0.000000e+00 1650/1693 (97%) EPI326285 A/Florida/13/2011 (A/H3N2) segment 4 (HA) 2894.8 0.000000e+00 1651/1693 (97%) EPI316181 A/Rhode Island/04/2011 (A/H3N2) segment 4 (HA) 2893.0 0.000000e+00 1651/1694 (97%) EPI511992 A/Tennessee/F2011/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI511939 A/Tennessee/F2019A/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI497462 A/Peru/PER373/2010 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI408585 A/Mississippi/05/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI408580 A/Mississippi/05/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI366356 A/Mississippi/05/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI359476 A/Boston/DOA75/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI335948 A/Santiago/18454/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI335923 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI335861 A/Argentina/676/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI325969 A/Mexico City/WRAIR3579T/2010 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI319740 A/Minnesota/09/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI319656 A/California/22/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI319128 A/Illinois/NHRC0002/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI316173 A/Peru/8410/2010 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI316114 A/Mississippi/03/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI316040 A/District of Columbia/03/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI309616 A/Texas/05/2011 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%) EPI309493 A/Maryland/07/2010 (A/H3N2) segment 4 (HA) 2891.1 0.000000e+00 1651/1694 (97%)

Isolate name: A/Ohio/27/2016 Isolate ID: EPI_ISL_232044 Passage details/history: OR Type: A / H3N2 Lineage: Sample information Collection date: 2016-07-30 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: United States / Ohio Additional location information: Patient age: Gender: Outbreak: Treatment: Specimen source: Institute information Originating lab: Ohio Department of Health Laboratories Sample ID given by the sample provider: 2016005318 ORIGINAL Address: Ohio Department of Health Laboratories 8995 East Main St Building 22 Reynoldsburg, 43068 United States Submitting lab: Centers for Disease Control and Prevention Sample ID given by the submitting laboratory: 3000480507 Authors: Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 3000480507_1 2264 EPI824746 PB1 3000480507_2 2274 EPI824747 PA 3000480507_3 2151 EPI824745 HA 3000480507_4 1693 EPI824749 NP 3000480507_5 1497 EPI824742 NA 3000480507_6 1363 EPI824748 MP 3000480507_7 982 EPI824744 NS 3000480507_8 838 EPI824743 Submitter information Submitter: Jang, Yunho Submission Date: 2016-08-19 Last modifier: Jang, Yunho Last modified: 2016-08-19 Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States

Descriptions Align Segment-ID Name Score E-Value Identity EPI824769 A/Michigan/83/2016 (A/H3N2) segment 8 (NS) 1227.3 0.000000e+00 664/664 (100%) EPI824759 A/Michigan/82/2016 (A/H3N2) segment 8 (NS) 1227.3 0.000000e+00 664/664 (100%) EPI824751 A/Ohio/28/2016 (A/H3N2) segment 8 (NS) 1227.3 0.000000e+00 664/664 (100%) EPI824743 A/Ohio/27/2016 (A/H3N2) segment 8 (NS) 1227.3 0.000000e+00 664/664 (100%) EPI691591 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 8 (NS) 1210.7 0.000000e+00 661/664 (99%) EPI596364 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 8 (NS) 1210.7 0.000000e+00 661/664 (99%) EPI490781 A/swine/Arkansas/SG1382/2011 (A/H1N2) segment 8 (NS) 1199.6 0.000000e+00 659/664 (99%) EPI489144 A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 8 (NS) 1199.6 0.000000e+00 659/664 (99%) EPI489102 A/swine/Arkansas/SG1384/2011 (A/H1N2) segment 8 (NS) 1199.6 0.000000e+00 659/664 (99%) EPI489088 A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 8 (NS) 1199.6 0.000000e+00 659/664 (99%) EPI489074 A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 8 (NS) 1199.6 0.000000e+00 659/664 (99%) EPI489067 A/swine/Arkansas/SG1375/2011 (A/H1N2) segment 8 (NS) 1199.6 0.000000e+00 659/664 (99%) EPI647599 A/swine/Ohio/A01076765/2010 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI490793 A/swine/Illinois/SG1398/2011 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI490771 A/swine/Arkansas/SG1379/2011 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI489095 A/swine/Arkansas/SG1383/2011 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI489081 A/swine/Arkansas/SG1377/2011 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI451198 A/swine/Ohio/A01116889/2011 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI401699 A/swine/Illinois/A01243094/2012 (A/H1N2) segment 8 (NS) 1194.1 0.000000e+00 658/664 (99%) EPI615597 A/swine/Illinois/A01134579/2011 (A/H1N2) segment 8 (NS) 1188.5 0.000000e+00 657/664 (98%) EPI615425 A/swine/Illinois/A01134578/2011 (A/H1N2) segment 8 (NS) 1188.5 0.000000e+00 657/664 (98%) EPI506437 A/swine/Indiana/A00968332/2011 (A/H1N2) segment 8 (NS) 1188.5 0.000000e+00 657/664 (98%) EPI490776 A/swine/Arkansas/SG1381/2011 (A/H1N2) segment 8 (NS) 1188.5 0.000000e+00 657/664 (98%) EPI489158 A/swine/Indiana/04254/2011 (A/H1N2) segment 8 (NS) 1188.5 0.000000e+00 657/664 (98%) EPI459212 A/swine/Illinois/A01134580/2011 (A/H1N2) segment 8 (NS) 1188.5 0.000000e+00 657/664 (98%) EPI641776 A/swine/North Carolina/A01409423/2013 (A/H3N2) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI492042 A/swine/Manitoba/02947/2010 (A/H1N1) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI491912 A/swine/Manitoba/02947/2010 (A/H1N1) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI489256 A/swine/Manitoba/01782/2007 (A/H3N2) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI414204 A/swine/Illinois/A01076709/2010 (A/H3N2) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI390743 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI389983 A/swine/Illinois/A01240575/2011 (A/H3N2) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI376210 A/swine/Ohio/FAH11-1/2010 (A/H1N2) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI324168 A/SW/MB/5-5/2009 (A/H1N1) segment 8 (NS) 1183.0 0.000000e+00 656/664 (98%) EPI491904 A/swine/Manitoba/02946/2010 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI490816 A/swine/Quebec/01003/2006 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI490813 A/swine/Quebec/01002/2006 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI490808 A/swine/Quebec/01000/2006 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI490660 A/swine/Oklahoma/00606/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI490239 A/swine/Manitoba/00446/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI489242 A/swine/Manitoba/01643/2007 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI489235 A/swine/Manitoba/01642/2007 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI489221 A/swine/Saskatchewan/01114/2006 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI489214 A/swine/Quebec/01001/2006 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI489186 A/swine/Manitoba/00446/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI488927 A/swine/Georgia/02604/2009 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI488568 A/swine/Minnesota/SG1238/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI488561 A/swine/Minnesota/SG1236/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI401642 A/swine/Illinois/A01125988/2012 (A/H1N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI354995 A/swine/Minnesota/A01076218/2010 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI182820 A/swine/Quebec/4001/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI103189 A/swine/Ontario/33853/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI103171 A/swine/Manitoba/12707/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI103117 A/Ontario/RV1273/2005 (A/H3N2) segment 8 (NS) 1177.4 0.000000e+00 655/664 (98%) EPI548378 A/swine/Iowa/A01445629/2013 (A/H1N1) segment 8 (NS) 1175.6 0.000000e+00 655/664 (98%) EPI692937 A/swine/Missouri/A01840724/2015 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI653852 A/swine/Illinois/A00857138a/2011 (A/H0) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI653772 A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI645105 A/swine/Missouri/A01847626/2015 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI645078 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI610199 A/swine/Indiana/01101/2006 (A/H1N1) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI584758 A/swine/Minnesota/00584/2005 (A/H1) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI531533 A/swine/Nebraska/A01202501/2011 (A/H1N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI492635 A/swine/Illinois/A00843191/2013 (A/H1N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI491980 A/swine/Minnesota/00574/2005 (A/H1N1) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI491793 A/swine/Minnesota/00574/2005 (A/H1N1) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI490804 A/swine/Quebec/00729/2005 (A/H3) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI490448 A/swine/Oklahoma/SG1473/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI489263 A/swine/Manitoba/02182/2008 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI489228 A/swine/Manitoba/01179/2006 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI488659 A/swine/Minnesota/00991/2006 (A/H1N1) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI459166 A/swine/Illinois/A01328594/2012 (A/H1N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI451219 A/swine/Illinois/A01158947/2012 (A/H1N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI391554 A/swine/Illinois/A00857131/2011 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI391514 A/swine/Illinois/A00857134/2011 (A/H0) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI383515 A/swine/Iowa/A01049317/2010 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI337517 A/swine/Minnesota/001444/2007 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI337445 A/swine/Minnesota/00611/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI337366 A/swine/Minnesota/00709/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI337353 A/swine/Minnesota/01146/2006 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI323204 A/swine/Minnesota/65767/2006 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI291803 A/Iowa/05/2007 (A/H1N1) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI227561 A/swine/Oklahoma/D05-52884/2005 (A/H1N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI168649 A/turkey/Minnesota/366767/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI158872 A/turkey/MN/366767/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI103207 A/turkey/Ontario/31232/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI103153 A/swine/British Columbia/28103/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI103135 A/swine/Alberta/14722/2005 (A/H3N2) segment 8 (NS) 1171.9 0.000000e+00 654/664 (98%) EPI502401 A/swine/Minnesota/A01279807/2012 (A/H1N2) segment 8 (NS) 1170.0 0.000000e+00 653/663 (98%) EPI693775 A/swine/Manitoba/D0095/2012 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI645070 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI615568 A/swine/Oklahoma/00557/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI615547 A/swine/Canada/01093/2006 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI610153 A/swine/Minnesota/D09-20853-3/2009 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI603595 A/swine/Iowa/A01202033/2011 (A/H1N1 pdm09) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI602590 A/swine/Iowa/A01202034/2011 (A/H1N1 pdm09) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI584916 A/swine/Minnesota/A01134524/2011 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI584515 A/swine/Minnesota/01082/2006 (A/H1N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI584448 A/swine/Iowa/A01202809/2011 (A/H1N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI531517 A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI507330 A/swine/Illinois/A01427261/2013 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI506481 A/swine/Indiana/A00968358/2012 (A/H1N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI490819 A/swine/Manitoba/01093/2006 (A/H0) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI490147 A/swine/Minnesota/SG1261/2006 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI490126 A/swine/Oklahoma/00518/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489706 A/swine/Iowa/13C038/2013 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489690 A/swine/Iowa/13C020/2013 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489682 A/swine/Iowa/13C029/2013 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489656 A/swine/Iowa/13C040/2013 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489207 A/swine/Alberta/00805/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489200 A/swine/Alberta/SG1405/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI489193 A/swine/British Columbia/00633/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 654/665 (98%) EPI488969 A/swine/Minnesota/SG1340/2009 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI488673 A/swine/Arkansas/01460/2007 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI488645 A/swine/Minnesota/SG1261/2006 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI488575 A/swine/Minnesota/00938/2005 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI488533 A/swine/Oklahoma/00518/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI433461 A/swine/Minnesota/A01125992/2012 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI407719 A/swine/Korea/VDS3/2009 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI390775 A/swine/Iowa/A01202023/2011 (A/H1N1 pdm09) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI390771 A/swine/Illinois/A01049981/2011 (A/H1N1 pdm09) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI390764 A/swine/Illinois/A01049980/2011 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI354965 A/swine/Minnesota/A01076196/2010 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI337955 A/swine/Illinois/02450/2008 (A/H0) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI337525 A/swine/Minnesota/001581/2007 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI337389 A/swine/Nebraska/00722/2005 (A/H0) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI324022 A/swine/QC/1531-3/2009 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI314675 A/swine/QC/414/2009 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI314331 A/turkey/BC/1529-3/2005 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI229376 A/turkey/OH/313053/2004 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI225763 A/swine/Minnesota/D06-28374.35/2006 (A/H1N1) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI222678 A/swine/Oklahoma/008722/2007 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI222655 A/swine/Minnesota/1145/2007 (A/H3N2) segment 8 (NS) 1166.4 0.000000e+00 653/664 (98%) EPI615650 A/swine/Minnesota/01068/2006 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI615620 A/swine/Minnesota/01601/2007 (A/H1N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI615536 A/swine/Ohio/01499/2007 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI615463 A/swine/Nebraska/01573/2007 (A/H1N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI610212 A/swine/Iowa/01564/2007 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI593707 A/swine/Illinois/01568/2007 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI584452 A/swine/Minnesota/A01047913/2010 (A/H1N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI507428 A/swine/Illinois/A01427360/2013 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI507414 A/swine/Illinois/A01427305/2013 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI491651 A/swine/North Carolina/SG1170/2003 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490802 A/swine/Quebec/00686/2005 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490726 A/swine/North Carolina/SG1337/2009 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490700 A/swine/North Carolina/01721/2007 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490678 A/swine/Georgia/SG1251/2006 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490546 A/swine/North Carolina/01469/2007 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490406 A/swine/Minnesota/00352/2004 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490385 A/swine/North Carolina/SG1464/2004 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490273 A/swine/Saskatchewan/SD0001/2011 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490259 A/swine/Manitoba/01781/2007 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490252 A/swine/Alberta/SG1415/2006 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI490140 A/swine/Georgia/SG1251/2006 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI489284 A/swine/Manitoba/02862/2009 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI489249 A/swine/Manitoba/01781/2007 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI488962 A/swine/North Carolina/SG1338/2009 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI488752 A/swine/Kentucky/01569/2007 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI488738 A/swine/North Carolina/SG1282/2007 (A/H0) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI488582 A/swine/Arkansas/SG1241/2006 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI482793 A/Iowa/02/2009 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI459148 A/swine/Minnesota/A01270872/2012 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI401120 A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI398827 A/swine/Illinois/53612-6/2010 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI390733 A/swine/Iowa/A01049950/2011 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI337549 A/swine/Minnesota/00484/2005 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI323266 A/swine/Minnesota/66853/2006 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI323257 A/swine/Minnesota/1300/2007 (A/H3N2) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI291795 A/Iowa/02/2009 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI281221 A/swine/Minnesota/02093/2008 (A/H1N1) segment 8 (NS) 1160.8 0.000000e+00 652/664 (98%) EPI323999 A/swine/QC/1488-2/2009 (A/H1N1) segment 8 (NS) 1159.0 0.000000e+00 651/664 (98%) EPI698129 A/swine/Alberta/SD0038/2014 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI694486 A/swine/Manitoba/D0280/2013 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI694045 A/swine/Manitoba/D0083/2013 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI693951 A/swine/Manitoba/D0180/2012 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI693842 A/swine/Manitoba/D0099/2012 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI693813 A/swine/Montana/D0382/2012 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI693798 A/swine/Manitoba/D0097/2012 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI615645 A/swine/North Carolina/00271/2004 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI615630 A/swine/Minnesota/01546/2007 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 652/665 (98%) EPI615499 A/swine/Iowa/00568/2005 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610237 A/swine/Minnesota/A01076208/2010 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610226 A/swine/North Carolina/01057/2006 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610168 A/swine/North Carolina/A01076202/2010 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610095 A/swine/Minnesota/D09-22757-13/2009 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610089 A/swine/Minnesota/D09-22757-4/2009 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610057 A/swine/Iowa/A01076186/2010 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI610010 A/swine/Minnesota/D09-22757-14/2009 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI589995 A/swine/Iowa/A01049797/2011 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI584551 A/swine/Iowa/A01202762/2011 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI584502 A/swine/Minnesota/A01047000/2010 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI584444 A/swine/Minnesota/A01049101/2010 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI560282 A/swine/Ontario/105-56/2012 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI506501 A/swine/Illinois/A01300279/2012 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI492231 A/swine/Manitoba/01729/2007 (A/H0) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI492188 A/swine/Nebraska/02866/2009 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI492184 A/swine/Iowa/SG1290/2007 (A/H0) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI492069 A/swine/North Carolina/SG1168/2003 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI492018 A/swine/Iowa/SG1290/2007 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI491861 A/swine/Manitoba/01799/2007 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI491785 A/swine/North Carolina/SG1232/2005 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI491675 A/swine/Nebraska/SG1178/2003 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490868 A/swine/Manitoba/02185/2008 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490752 A/swine/North Carolina/SG1363/2010 (A/H1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490746 A/swine/North Carolina/SG1359/2010 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490686 A/swine/Minnesota/SG1265/2006 (A/H3) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490669 A/swine/North Carolina/SG1229/2005 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490657 A/swine/North Carolina/SG1199/2004 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490553 A/swine/North Carolina/01855/2007 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490504 A/swine/Oklahoma/01382/2006 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490420 A/swine/Iowa/SG1469/2004 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI490154 A/swine/North Carolina/SG1281/2007 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI488836 A/swine/North Carolina/SG1306/2008 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI488787 A/swine/Minnesota/SG1294/2007 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 652/665 (98%) EPI488766 A/swine/Nebraska/01711/2007 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI488745 A/swine/North Carolina/01930/2007 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 652/665 (98%) EPI488722 A/swine/Kentucky/SG1277/2007 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI488526 A/swine/Illinois/00303/2004 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI443447 A/swine/South Dakota/A01202617/2011 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI443438 A/swine/Minnesota/A01134336/2010 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI433553 A/swine/Illinois/A01301791/2012 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI433457 A/swine/Illinois/A01076859/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI416850 A/swine/North Dakota/A01104053/2012 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI414223 A/swine/Illinois/A01076768/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI414218 A/swine/Illinois/A01076735/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI414213 A/swine/Illinois/A01076730/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI414208 A/swine/Illinois/A01076724/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI414199 A/swine/Illinois/A01076708/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI390754 A/swine/Iowa/A01049894/2011 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI390652 A/swine/Iowa/A01076508/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI390647 A/swine/Iowa/A01076507/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI390632 A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI371342 A/swine/Iowa/A01049185/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI367847 A/swine/Illinois/A01047014/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI367839 A/swine/Illinois/A01047009/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI354988 A/swine/North Carolina/A01076212/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI354980 A/swine/North Carolina/A01076204/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI353839 A/swine/Illinois/A01076719/2010 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI351667 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI337533 A/swine/Minnesota/001332/2006 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI337501 A/swine/Minnesota/SG1144/2006 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI337379 A/swine/Minnesota/001200/2006 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI324047 A/swine/QC/1697-1/2009 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI324039 A/swine/QC/1695-3/2009 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI323280 A/swine/Minnesota/7931/2007 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI314631 A/swine/QC/2108-2/2009 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI291826 A/Minnesota/03/2008 (A/H1N1) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI281220 A/swine/Minnesota/02011/2008 (A/H1N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI225765 A/swine/Minnesota/SG242/2006 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%) EPI184452 A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 8 (NS) 1155.3 0.000000e+00 651/664 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824761 A/Michigan/82/2016 (A/H3N2) segment 3 (PA) 2021.4 0.000000e+00 1094/1094 (100%) EPI824771 A/Michigan/83/2016 (A/H3N2) segment 3 (PA) 2015.8 0.000000e+00 1093/1094 (99%) EPI824745 A/Ohio/27/2016 (A/H3N2) segment 3 (PA) 2010.3 0.000000e+00 1092/1094 (99%) EPI596385 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 3 (PA) 1943.8 0.000000e+00 1080/1094 (98%) EPI547637 A/swine/Iowa/A01445629/2013 (A/H1N1) segment 3 (PA) 1938.3 0.000000e+00 1079/1094 (98%) EPI691589 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 3 (PA) 1927.2 0.000000e+00 1077/1094 (98%) EPI652841 A/swine/North Carolina/A01410354/2014 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI652838 A/swine/Kansas/A01377243/2014 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI467767 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI395325 A/West Virginia/06/2011 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI384169 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI384164 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI383836 A/swine/Iowa/A01202530/2011 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI351661 A/swine/Iowa/A01202659/2011 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI346489 A/West Virginia/06/2011 (A/H3N2) segment 3 (PA) 1916.1 0.000000e+00 1075/1094 (98%) EPI663537 A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI652836 A/swine/Illinois/A00857134/2011 (A/H0) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI652835 A/swine/Illinois/A00857131/2011 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI652831 A/swine/Illinois/A00857129/2011 (A/H0) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI459158 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI384159 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI384056 A/swine/Ohio/A01203186/2012 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI369044 A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI369036 A/swine/Illinois/A00857138a/2011 (A/H0) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI369021 A/swine/Illinois/A00857300/2011 (A/H0) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI351652 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1074/1094 (98%) EPI344393 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1072/1091 (98%) EPI344386 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1072/1091 (98%) EPI340980 A/Indiana/10/2011 (A/H3N2) segment 3 (PA) 1910.6 0.000000e+00 1072/1091 (98%) EPI398549 A/swine/Illinois/A01240908/2011 (A/H3N2) segment 3 (PA) 1906.9 0.000000e+00 1073/1094 (98%) EPI395360 A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 3 (PA) 1906.9 0.000000e+00 1073/1094 (98%) EPI652830 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI603665 A/swine/Iowa/A01202677/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI590009 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI589958 A/swine/Iowa/A01049724/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI589949 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI589910 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI549362 A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI502444 A/swine/Indiana/A01260109/2012 (A/H1N1) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI502409 A/swine/Montana/21/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI493725 A/swine/Iowa/13E045/2013 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI475534 A/swine/Illinois/A01327184/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI467638 A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI465143 A/swine/Illinois/A01240835/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI465133 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1071/1091 (98%) EPI451201 A/swine/Alabama/A01104056/2012 (A/H0) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI450170 A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI450168 A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI433566 A/swine/Indiana/A01327215/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI433539 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI433532 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI433520 A/swine/Iowa/A01267939/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI433304 A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI433296 A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI415568 A/swine/Ohio/11SW174/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI415519 A/swine/Ohio/11SW168/2011 (A/H0) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI414177 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI414169 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI404889 A/Iowa/16/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI401713 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI401657 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI401621 A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI401617 A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI398541 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI398533 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI398499 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI398491 A/swine/Maryland/A01104048/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI398478 A/swine/Maryland/A01104040/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397944 A/Ohio/84/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397935 A/Ohio/41/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397929 A/Ohio/19/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397922 A/Ohio/18/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397916 A/Ohio/17/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397903 A/Hawaii/03/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397747 A/Ohio/87/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397658 A/Maryland/28/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397552 A/Ohio/86/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397536 A/Ohio/56/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397528 A/Ohio/47/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397520 A/Ohio/44/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397513 A/Ohio/36/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397436 A/Wisconsin/30/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397428 A/Ohio/81/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI397353 A/Ohio/57/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396295 A/Maryland/23/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396274 A/Indiana/135/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396233 A/Ohio/34/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396198 A/Ohio/79/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396194 A/Ohio/78/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396188 A/Ohio/77/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI396173 A/Ohio/80/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395947 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395939 A/swine/Indiana/A00968373/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395926 A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395918 A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395873 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395865 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395739 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395341 A/Wisconsin/28/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395296 A/West Virginia/09/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395290 A/Maryland/25/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395273 A/Ohio/75/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI395263 A/Ohio/65/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI394945 A/Ohio/64/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI394941 A/Maryland/22/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI394923 A/Illinois/11/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI394918 A/Ohio/69/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI394914 A/Ohio/28/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI393778 A/Ohio/74/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI393692 A/West Virginia/16/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI393685 A/Ohio/23/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI393678 A/West Virginia/10/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI393507 A/Ohio/52/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI393314 A/Ohio/38/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI392922 A/Maryland/20/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI392744 A/Wisconsin/22/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI392731 A/Pennsylvania/13/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI390757 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 3 (PA) 1905.0 0.000000e+00 1074/1095 (98%) EPI389976 A/swine/Illinois/A01202978/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI388336 A/Ohio/16/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI388316 A/Ohio/20/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI388309 A/Ohio/15/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI388302 A/Ohio/14/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI388286 A/Indiana/17/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI388278 A/Indiana/13/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI385914 A/swine/Illinois/A01241871/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI384219 A/swine/Illinois/A01241842/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI384194 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1071/1091 (98%) EPI384154 A/swine/Iowa/A01241840/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI381869 A/Hawaii/03/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI381853 A/Ohio/13/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI378519 A/Indiana/09/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI378511 A/Indiana/07/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI378501 A/Indiana/07/2012 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI346436 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI346428 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI346420 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI342700 A/Iowa/09/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI342692 A/Iowa/08/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI342684 A/Iowa/07/2011 (A/H3N2) segment 3 (PA) 1905.0 0.000000e+00 1073/1094 (98%) EPI451221 A/swine/Ohio/A01208180/2012 (A/H3N2) segment 3 (PA) 1903.2 0.000000e+00 1072/1094 (97%) EPI451228 A/swine/Ohio/A01208181/2012 (A/H3N2) segment 3 (PA) 1901.3 0.000000e+00 1072/1094 (97%) EPI394073 A/Wisconsin/27/2012 (A/H3N2) segment 3 (PA) 1901.3 0.000000e+00 1072/1094 (97%) EPI392738 A/West Virginia/15/2012 (A/H3N2) segment 3 (PA) 1901.3 0.000000e+00 1071/1092 (98%) EPI673014 A/swine/North Carolina/120138/2014 (A/H1N1) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI641347 A/swine/North Carolina/A01290778/2013 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI590004 A/swine/Iowa/A01049722/2011 (A/H1N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI557538 A/Wisconsin/24/2014 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI530109 A/swine/Indiana/A00968364/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI526569 A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI526501 A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI475521 A/swine/Illinois/A01327629/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI475509 A/swine/Indiana/A01243254/2012 (A/H1N1) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI468743 A/swine/Illinois/A01432127/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI468700 A/swine/Maryland/A01444460/2013 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI467754 A/swine/Iowa/A01244302/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI467748 A/swine/Illinois/A01244401/2012 (A/H1N1) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI461433 A/swine/Ohio/11SW219/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI461402 A/swine/Ohio/11SW208/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459577 A/swine/Ohio/11SW116/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459549 A/swine/Ohio/11SW349/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459545 A/swine/Ohio/11SW177/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459539 A/swine/Ohio/11SW111/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459508 A/swine/Ohio/11SW162/2011 (A/H1N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459481 A/swine/Ohio/11SW214/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI459478 A/swine/Ohio/11SW344/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI450176 A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI450167 A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI450164 A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI450163 A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI443566 A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI443565 A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI443562 A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI441117 A/swine/Indiana/A00968380/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI433561 A/swine/Indiana/A01327213/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI433505 A/swine/Ohio/25/2012 (A/H1N1) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI424096 A/swine/Indiana/A01260029/2012 (A/H1N1) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI424072 A/swine/Michigan/A01259003/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI416853 A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI415970 A/swine/Ohio/11SW347/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415834 A/swine/Ohio/11SW218/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415825 A/swine/Ohio/11SW217/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415800 A/swine/Ohio/11SW213/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415791 A/swine/Ohio/11SW211/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415775 A/swine/Ohio/11SW209/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415758 A/swine/Ohio/11SW206/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415733 A/swine/Ohio/11SW203/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415716 A/swine/Ohio/11SW201/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415697 A/swine/Ohio/11SW197/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415689 A/swine/Ohio/11SW196/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415681 A/swine/Ohio/11SW195/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415663 A/swine/Ohio/11SW191/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415655 A/swine/Ohio/11SW189/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415645 A/swine/Ohio/11SW187/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415637 A/swine/Ohio/11SW186/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415629 A/swine/Ohio/11SW185/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415621 A/swine/Ohio/11SW184/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415611 A/swine/Ohio/11SW183/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415603 A/swine/Ohio/11SW180/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415595 A/swine/Ohio/11SW179/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415560 A/swine/Ohio/11SW173/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415552 A/swine/Ohio/11SW172/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415544 A/swine/Ohio/11SW171/2011 (A/H0) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415526 A/swine/Ohio/11SW169/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415509 A/swine/Ohio/11SW166/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415493 A/swine/Ohio/11SW161/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415337 A/swine/Ohio/11SW98/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415329 A/swine/Ohio/11SW97/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415317 A/swine/Ohio/11SW95/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415309 A/swine/Ohio/11SW94/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415301 A/swine/Ohio/11SW93/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415293 A/swine/Ohio/11SW87/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415285 A/swine/Ohio/11SW119/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415277 A/swine/Ohio/11SW118/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415269 A/swine/Ohio/11SW115/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415261 A/swine/Ohio/11SW114/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415253 A/swine/Ohio/11SW113/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415245 A/swine/Ohio/11SW112/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415237 A/swine/Ohio/11SW109/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415229 A/swine/Ohio/11SW108/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI415221 A/swine/Ohio/11SW103/2011 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1073/1095 (97%) EPI414185 A/swine/Indiana/A00968394/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI401655 A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI398517 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397958 A/Ohio/88/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397544 A/Ohio/83/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397507 A/Indiana/90/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397500 A/Indiana/104/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397422 A/Minnesota/15/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397408 A/Michigan/16/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397400 A/Indiana/99/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397392 A/Indiana/93/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397381 A/Indiana/138/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397374 A/Indiana/123/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397348 A/Ohio/37/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397103 A/Indiana/115/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI397099 A/Indiana/113/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396283 A/Ohio/43/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396266 A/Indiana/133/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396258 A/Indiana/127/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396250 A/Indiana/126/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396243 A/Indiana/125/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396237 A/Indiana/103/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396226 A/Indiana/147/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396204 A/Indiana/149/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI396179 A/Indiana/77/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI395955 A/swine/Indiana/A00968379/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI395890 A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI395882 A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) EPI395731 A/swine/Indiana/A01104030/2012 (A/H3N2) segment 3 (PA) 1899.5 0.000000e+00 1072/1094 (97%) Alignments

Descriptions Align Segment-ID Name Score E-Value Identity EPI824773 A/Michigan/83/2016 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI824763 A/Michigan/82/2016 (A/H3N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI824755 A/Ohio/28/2016 (A/H3N2) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%) EPI824747 A/Ohio/27/2016 (A/H3N2) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%) EPI647639 A/swine/Minnesota/A01491955/2014 (A/H1N1) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI669631 A/swine/Iowa/14TOSU10643/2014 (A/H1N1) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI645076 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI645068 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI669373 A/swine/Iowa/14TOSU10638/2014 (A/H1N1) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI691593 A/swine/Iowa/A01478359/2014 (A/H1N1) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI677675 A/Minnesota/46/2015 (A/H1N1) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI584524 A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550269 A/swine/Indiana/13TOSU4957/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550262 A/swine/Indiana/13TOSU4629/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550255 A/swine/Indiana/13TOSU4361/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550227 A/swine/Indiana/13TOSU3843/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550197 A/swine/Indiana/13TOSU5926/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550190 A/swine/Indiana/13TOSU3954/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550183 A/swine/Indiana/13TOSU5099/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550176 A/swine/Indiana/13TOSU5922/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550155 A/swine/Indiana/13TOSU3955/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550127 A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550092 A/swine/Indiana/13TOSU5552/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550071 A/swine/Ohio/13TOSU1928/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550036 A/swine/Indiana/13TOSU4944/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550022 A/swine/Ohio/13TOSU1664/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI550001 A/swine/Indiana/13TOSU5918/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI549980 A/swine/Indiana/13TOSU4995/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI549973 A/swine/Indiana/13TOSU4336/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI528481 A/swine/Ohio/13TOSU0735/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI528008 A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527996 A/swine/Ohio/13TOSU0736/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527952 A/swine/Indiana/13TOSU0802/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527949 A/swine/Ohio/13TOSU0733/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527915 A/swine/Indiana/13TOSU1157/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527905 A/swine/Indiana/13TOSU1154/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527900 A/swine/Ohio/13TOSU1958/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527867 A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527210 A/swine/Ohio/13TOSU1522/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527166 A/swine/Ohio/13TOSU1529/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527126 A/swine/Indiana/13TOSU0680/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527119 A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527081 A/swine/Ohio/13TOSU2115/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI527037 A/swine/Ohio/13TOSU1948/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI526995 A/swine/Indiana/13TOSU0675/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI526989 A/swine/Indiana/13TOSU1148/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI526907 A/swine/Indiana/13TOSU1159/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI526905 A/swine/Indiana/13TOSU0796/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI471100 A/Arkansas/14/2013 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI464868 A/Ohio/05/2013 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI459228 A/swine/Iowa/A01328941/2012 (A/H1N1) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI397323 A/swine/Minnesota/4/2012 (A/H3N2) segment 2 (PB1) 4017.6 0.000000e+00 2241/2274 (98%) EPI653976 A/swine/South Dakota/23/2012 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550241 A/swine/Indiana/13TOSU5885/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550234 A/swine/Indiana/13TOSU3980/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550211 A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550204 A/swine/Indiana/13TOSU5708/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550162 A/swine/Indiana/13TOSU3616/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550141 A/swine/Indiana/13TOSU3984/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550120 A/swine/Indiana/13TOSU3603/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550106 A/swine/Indiana/13TOSU5671/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550085 A/swine/Indiana/13TOSU5675/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550050 A/swine/Indiana/13TOSU3913/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI550015 A/swine/Indiana/13TOSU4194/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI549994 A/swine/Indiana/13TOSU5925/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI549966 A/swine/Indiana/13TOSU3915/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI528002 A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527950 A/swine/Ohio/13TOSU1674/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527910 A/swine/Indiana/13TOSU1051/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527877 A/swine/Indiana/13TOSU0815/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527213 A/swine/Indiana/13TOSU0820/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI527122 A/swine/Ohio/13TOSU2106/2013 (A/H1N1) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI526947 A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI459177 A/swine/Iowa/A01432034/2012 (A/H1N2) segment 2 (PB1) 4012.0 0.000000e+00 2240/2274 (98%) EPI603626 A/swine/Iowa/A01049949/2011 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI584431 A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI550043 A/swine/Indiana/13TOSU3988/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI544926 A/swine/Iowa/13H098/2013 (A/H3N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI538967 A/swine/Iowa/13H076/2013 (A/H3N2) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI527926 A/swine/Indiana/13TOSU0782/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI482783 A/Arkansas/15/2013 (A/H1N1) segment 2 (PB1) 4006.5 0.000000e+00 2239/2274 (98%) EPI538981 A/swine/Iowa/13H092/2013 (A/H3N2) segment 2 (PB1) 4002.8 0.000000e+00 2238/2274 (98%) EPI691563 A/swine/Iowa/A02077588/2015 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI602596 A/swine/Iowa/A01202049/2011 (A/H1N1 pdm09) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI589186 A/swine/Iowa/A01049863/2011 (A/H1N2) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI526945 A/swine/Indiana/13TOSU1316/2013 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI459087 A/swine/Minnesota/A01271731/2012 (A/H3N2) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI441155 A/swine/California/A00968789/2013 (A/H1N1) segment 2 (PB1) 4001.0 0.000000e+00 2238/2274 (98%) EPI589897 A/swine/Iowa/A01049864/2011 (A/H1N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI538974 A/swine/Iowa/13H073/2013 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2238/2275 (98%) EPI538960 A/swine/Iowa/13H065/2013 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI507416 A/swine/Illinois/A01427335/2013 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI493629 A/swine/Iowa/13E088/2013 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI465151 A/swine/Minnesota/A00907733/2011 (A/H3N2) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI459219 A/swine/Minnesota/A01270355/2012 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI459138 A/swine/Minnesota/A01279213/2012 (A/H1N1) segment 2 (PB1) 3995.4 0.000000e+00 2237/2274 (98%) EPI603621 A/swine/Iowa/A01202087/2011 (A/H1N2) segment 2 (PB1) 3989.9 0.000000e+00 2237/2275 (98%) EPI585131 A/swine/Minnesota/A01134221/2011 (A/H1N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI584886 A/swine/Minnesota/A01134236/2011 (A/H1N2) segment 2 (PB1) 3989.9 0.000000e+00 2236/2274 (98%) EPI615598 A/swine/Iowa/A01202444/2011 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2236/2275 (98%) EPI603583 A/swine/Iowa/A01202443/2011 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2236/2275 (98%) EPI602575 A/swine/Iowa/A01202442/2011 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2236/2275 (98%) EPI584424 A/swine/Minnesota/A01047499/2010 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI502596 A/swine/Minnesota/A01203313/2012 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI465155 A/swine/Minnesota/A00907734/2011 (A/H3N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI459204 A/swine/Minnesota/A01203885/2012 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI459133 A/swine/South Dakota/A01279279/2012 (A/H3N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI441141 A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI441136 A/swine/Iowa/A01203125/2012 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI414225 A/swine/Minnesota/A01240127/2011 (A/H3N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI401662 A/swine/Minnesota/A01301731/2012 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI397670 A/Minnesota/14/2012 (A/H1N2) segment 2 (PB1) 3984.3 0.000000e+00 2235/2274 (98%) EPI548216 A/swine/Iowa/A01445788/2013 (A/H1N2) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI504907 A/swine/South Dakota/SJ1319788/2013 (A/H1N1) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI441121 A/swine/Minnesota/A01202471/2011 (A/H1N2) segment 2 (PB1) 3978.8 0.000000e+00 2235/2275 (98%) EPI384065 A/swine/Minnesota/A01116381/2011 (A/H3N2) segment 2 (PB1) 3978.8 0.000000e+00 2234/2274 (98%) EPI502403 A/swine/South Dakota/A01267922/2012 (A/H1N1) segment 2 (PB1) 3973.3 0.000000e+00 2234/2275 (98%) EPI638968 A/Iowa/39/2015 (A/H1N1) segment 2 (PB1) 3967.7 0.000000e+00 2226/2265 (98%) EPI528462 A/swine/Texas/13TOSU0050/2013 (A/H1N1) segment 2 (PB1) 3967.7 0.000000e+00 2233/2275 (98%) EPI487890 A/swine/Minnesota/A01327764/2012 (A/H3N2) segment 2 (PB1) 3967.7 0.000000e+00 2232/2274 (98%) EPI451211 A/swine/Minnesota/A01327763/2012 (A/H3N2) segment 2 (PB1) 3967.7 0.000000e+00 2232/2274 (98%) EPI443474 A/swine/Minnesota/A01300999/2012 (A/H3N2) segment 2 (PB1) 3967.7 0.000000e+00 2232/2274 (98%) EPI424049 A/swine/Iowa/A01202576/2011 (A/H1N2) segment 2 (PB1) 3967.7 0.000000e+00 2233/2275 (98%) EPI653957 A/swine/Indiana/A01260897/2015 (A/H1N1) segment 2 (PB1) 3962.2 0.000000e+00 2232/2275 (98%) EPI527852 A/swine/Texas/13TOSU0035/2013 (A/H1N1) segment 2 (PB1) 3962.2 0.000000e+00 2233/2276 (98%) EPI493678 A/swine/Iowa/13E078/2013 (A/H1N1) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%) EPI493653 A/swine/Iowa/13E100/2013 (A/H1N1) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%) EPI468715 A/swine/Minnesota/A01301732/2012 (A/H1N1) segment 2 (PB1) 3962.2 0.000000e+00 2231/2274 (98%) EPI550148 A/swine/Texas/13TOSU0041/2013 (A/H1N1) segment 2 (PB1) 3956.6 0.000000e+00 2232/2276 (98%) EPI465122 A/swine/Illinois/A01202825/2011 (A/H3N2) segment 2 (PB1) 3956.6 0.000000e+00 2231/2275 (98%) EPI489173 A/swine/Minnesota/SG1402/2011 (A/H1N2) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%) EPI459199 A/swine/Iowa/A01203809/2012 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%) EPI459106 A/swine/Illinois/A01203923/2012 (A/H1N1) segment 2 (PB1) 3951.1 0.000000e+00 2229/2274 (98%) EPI506468 A/swine/Iowa/A01300451/2012 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI506439 A/swine/Iowa/A01300445/2012 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI416837 A/swine/Minnesota/A01076701/2010 (A/H3N2) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI467762 A/swine/Iowa/A01432230/2012 (A/H1N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%) EPI433562 A/swine/Iowa/A01301778/2012 (A/H1N2) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%) EPI401660 A/swine/Minnesota/12/2012 (A/H1N2) segment 2 (PB1) 3940.0 0.000000e+00 2228/2275 (97%) EPI459229 A/swine/Nebraska/A01270646/2012 (A/H1N2) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI443419 A/swine/Iowa/A01267774/2012 (A/H1N2) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI641748 A/swine/Kansas/A01377229/2014 (A/H1N1) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%) EPI589879 A/swine/Iowa/A01049368/2011 (A/H1N1) segment 2 (PB1) 3923.4 0.000000e+00 2224/2274 (97%) EPI390654 A/swine/Minnesota/A01076531/2010 (A/H3N2) segment 2 (PB1) 3923.4 0.000000e+00 2226/2276 (97%) EPI603579 A/swine/Iowa/A01202086/2011 (A/H1N2) segment 2 (PB1) 3921.6 0.000000e+00 2223/2275 (97%) EPI433514 A/swine/Minnesota/A01267908/2012 (A/H1N1) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%) EPI416810 A/mink/South Dakota/A01279427/2012 (A/H1N1) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%) EPI544919 A/swine/Iowa/13H090/2013 (A/H3N2) segment 2 (PB1) 3908.6 0.000000e+00 2211/2274 (97%) EPI527947 A/swine/Iowa/13TOSU0226/2013 (A/H1N1) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%) EPI610230 A/swine/Minnesota/A01076208/2010 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%) EPI527859 A/swine/Iowa/13TOSU0239/2013 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%) EPI527106 A/swine/Iowa/13TOSU0240/2013 (A/H1N1) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%) EPI177837 A/swine/Minnesota/7209/2007 (A/H3N2) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI647628 A/swine/Missouri/A01492716/2014 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI584493 A/swine/Minnesota/A01047003/2010 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI488795 A/swine/Arkansas/SG1295/2008 (A/H3N2) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI433509 A/swine/Iowa/A01267837/2012 (A/H1N1) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI535108 A/swine/Nebraska/A01104081/2014 (A/H1N2) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI584503 A/swine/Minnesota/A01047000/2010 (A/H1N1) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI459170 A/swine/Illinois/A01158960/2013 (A/H1N1) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI528417 A/swine/Texas/13TOSU6273/2013 (A/H1N2) segment 2 (PB1) 3862.5 0.000000e+00 2214/2275 (97%) EPI526943 A/swine/Texas/13TOSU6276/2013 (A/H1N2) segment 2 (PB1) 3862.5 0.000000e+00 2214/2275 (97%) EPI499927 A/swine/Iowa/13H072/2013 (A/H1N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2275 (97%) EPI641764 A/swine/Texas/A01410206/2014 (A/H1N2) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%) EPI441150 A/swine/South Dakota/A01267895/2012 (A/H1N1) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI669632 A/swine/Kentucky/14TOSU23804/2014 (A/H1N1) segment 2 (PB1) 3834.8 0.000000e+00 2209/2275 (97%) EPI669570 A/swine/Kentucky/14TOSU23975/2014 (A/H1N1) segment 2 (PB1) 3834.8 0.000000e+00 2209/2275 (97%) EPI669462 A/swine/Kentucky/14TOSU23991/2014 (A/H1N1) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%) EPI669676 A/swine/Indiana/14TOSU0032/2014 (A/H1N2) segment 2 (PB1) 3812.6 0.000000e+00 2206/2276 (96%) EPI669628 A/swine/Indiana/14TOSU0028/2014 (A/H1N2) segment 2 (PB1) 3812.6 0.000000e+00 2206/2276 (96%) EPI337347 A/swine/Iowa/01700/2007 (A/H3N2) segment 2 (PB1) 3807.1 0.000000e+00 2204/2275 (96%) EPI281287 A/swine/Iowa/02096/2008 (A/H1N1) segment 2 (PB1) 3803.4 0.000000e+00 2173/2230 (97%) EPI669537 A/swine/Ohio/14TOSU23764/2014 (A/H1N2) segment 2 (PB1) 3796.0 0.000000e+00 2203/2276 (96%) EPI490386 A/swine/North Carolina/SG1464/2004 (A/H3N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%) EPI490365 A/swine/North Carolina/00371/2004 (A/H1N1) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%) EPI229378 A/turkey/OH/313053/2004 (A/H3N2) segment 2 (PB1) 3796.0 0.000000e+00 2202/2275 (96%) EPI669649 A/swine/Kentucky/14TOSU23973/2014 (A/H1N1) segment 2 (PB1) 3794.1 0.000000e+00 2202/2276 (96%) EPI544933 A/swine/Iowa/13H091/2013 (A/H0) segment 2 (PB1) 3792.3 0.000000e+00 2187/2276 (96%) EPI490127 A/swine/Oklahoma/00518/2005 (A/H3N2) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%) EPI488562 A/swine/Minnesota/SG1236/2005 (A/H3N2) segment 2 (PB1) 3790.4 0.000000e+00 2202/2276 (96%) EPI488534 A/swine/Oklahoma/00518/2005 (A/H3N2) segment 2 (PB1) 3790.4 0.000000e+00 2201/2275 (96%) EPI490141 A/swine/Georgia/SG1251/2006 (A/H1N1) segment 2 (PB1) 3784.9 0.000000e+00 2200/2275 (96%) EPI489187 A/swine/Manitoba/00446/2005 (A/H3N2) segment 2 (PB1) 3784.9 0.000000e+00 2201/2276 (96%) EPI337957 A/swine/Illinois/02450/2008 (A/H0) segment 2 (PB1) 3784.9 0.000000e+00 2201/2276 (96%) EPI103131 A/swine/Alberta/14722/2005 (A/H3N2) segment 2 (PB1) 3784.9 0.000000e+00 2201/2276 (96%) EPI488527 A/swine/Illinois/00303/2004 (A/H3N2) segment 2 (PB1) 3783.1 0.000000e+00 2199/2274 (96%) EPI678447 A/swine/Indiana/A01260998/2015 (A/H1N1) segment 2 (PB1) 3779.4 0.000000e+00 2198/2274 (96%) EPI491787 A/swine/North Carolina/SG1232/2005 (A/H1N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%) EPI490449 A/swine/Oklahoma/SG1473/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%) EPI490246 A/swine/Manitoba/00446/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2200/2276 (96%) EPI488555 A/swine/North Carolina/SG1230/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%) EPI337447 A/swine/Minnesota/00611/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2200/2276 (96%) EPI337391 A/swine/Nebraska/00722/2005 (A/H0) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%) EPI227580 A/turkey/NC/353568/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2200/2276 (96%) EPI158874 A/turkey/MN/366767/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2199/2275 (96%) EPI103185 A/swine/Ontario/33853/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2200/2276 (96%) EPI103113 A/Ontario/RV1273/2005 (A/H3N2) segment 2 (PB1) 3779.4 0.000000e+00 2200/2276 (96%) EPI182822 A/swine/Quebec/4001/2005 (A/H3N2) segment 2 (PB1) 3775.7 0.000000e+00 2199/2276 (96%) EPI491831 A/swine/Minnesota/SG1237/2005 (A/H1N1) segment 2 (PB1) 3773.8 0.000000e+00 2198/2275 (96%) EPI490421 A/swine/Iowa/SG1469/2004 (A/H3N2) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%) EPI489194 A/swine/British Columbia/00633/2005 (A/H3N2) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%) EPI488569 A/swine/Minnesota/SG1238/2005 (A/H3N2) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%) EPI314337 A/turkey/BC/1529-3/2005 (A/H3N2) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%) EPI177836 A/swine/Minnesota/1300/2007 (A/H3N2) segment 2 (PB1) 3773.8 0.000000e+00 2199/2276 (96%) EPI584533 A/swine/Minnesota/01076/2006 (A/H1N1) segment 2 (PB1) 3768.3 0.000000e+00 2198/2276 (96%) EPI488667 A/swine/Illinois/01131/2006 (A/H3N2) segment 2 (PB1) 3768.3 0.000000e+00 2197/2275 (96%) EPI488173 A/swine/North Carolina/SG1197/2004 (A/H3N2) segment 2 (PB1) 3768.3 0.000000e+00 2197/2275 (96%) EPI289639 A/swine/Minnesota/5947/2007 (A/H3N2) segment 2 (PB1) 3768.3 0.000000e+00 2198/2276 (96%) EPI103167 A/swine/Manitoba/12707/2005 (A/H3N2) segment 2 (PB1) 3768.3 0.000000e+00 2198/2276 (96%) EPI98708 A/swine/MI/PU243/04 (A/H3N1) segment 2 (PB1) 3768.3 0.000000e+00 2198/2276 (96%) EPI228920 A/turkey/Illinois/2004 (A/H3N2) segment 2 (PB1) 3766.4 0.000000e+00 2196/2274 (96%) EPI177834 A/swine/Minnesota/578/2007 (A/H3N2) segment 2 (PB1) 3764.6 0.000000e+00 2197/2276 (96%) EPI615529 A/swine/Ohio/02089/2008 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI584510 A/swine/Minnesota/01082/2006 (A/H1N2) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI491779 A/swine/North Carolina/SG1226/2005 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI490477 A/swine/North Carolina/SG1478/2005 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI489215 A/swine/Quebec/01001/2006 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI489208 A/swine/Alberta/00805/2005 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI489201 A/swine/Alberta/SG1405/2005 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI337368 A/swine/Minnesota/00709/2005 (A/H3N2) segment 2 (PB1) 3762.7 0.000000e+00 2197/2276 (96%) EPI291907 A/Ohio/02/2007 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI291859 A/Ohio/01/2007 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI291790 A/Illinois/09/2007 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI173658 A/swine/OH/511445/2007 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI153518 A/swine/Ohio/24366/07 (A/H1N1) segment 2 (PB1) 3762.7 0.000000e+00 2196/2275 (96%) EPI490547 A/swine/North Carolina/01469/2007 (A/H3N2) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%) EPI488723 A/swine/Kentucky/SG1277/2007 (A/H1N1) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%) EPI488576 A/swine/Minnesota/00938/2005 (A/H1N1) segment 2 (PB1) 3757.2 0.000000e+00 2196/2276 (96%) EPI335030 A/swine/North Carolina/38448-1/2005 (A/H1N1) segment 2 (PB1) 3757.2 0.000000e+00 2196/2276 (96%) EPI177832 A/swine/Minnesota/66853/2006 (A/H3N2) segment 2 (PB1) 3757.2 0.000000e+00 2197/2277 (96%) EPI153520 A/swine/Ohio/C62006/06 (A/H1N1) segment 2 (PB1) 3757.2 0.000000e+00 2195/2275 (96%) EPI669337 A/swine/Ohio/14TOSU23771/2014 (A/H1N2) segment 2 (PB1) 3751.7 0.000000e+00 2197/2278 (96%) EPI663257 A/swine/South Dakota/A01349306/2013 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2194/2275 (96%) EPI615430 A/swine/Missouri/00563/2005 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2196/2277 (96%) EPI492012 A/swine/Oklahoma/01452/2007 (A/H1N2) segment 2 (PB1) 3751.7 0.000000e+00 2194/2275 (96%) EPI491982 A/swine/Minnesota/00574/2005 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2195/2276 (96%) EPI491795 A/swine/Minnesota/00574/2005 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2195/2276 (96%) EPI489222 A/swine/Saskatchewan/01114/2006 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2195/2276 (96%) EPI488802 A/swine/Arkansas/SG1297/2008 (A/H3N2) segment 2 (PB1) 3751.7 0.000000e+00 2195/2276 (96%) EPI488625 A/swine/North Carolina/01169/2006 (A/H1N2) segment 2 (PB1) 3751.7 0.000000e+00 2194/2275 (96%) EPI488583 A/swine/Arkansas/SG1241/2006 (A/H1N1) segment 2 (PB1) 3751.7 0.000000e+00 2196/2277 (96%) EPI388380 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3751.7 0.000000e+00 2194/2275 (96%) EPI291824 A/Michigan/09/2007 (A/H1N2) segment 2 (PB1) 3751.7 0.000000e+00 2194/2275 (96%) EPI653088 A/swine/Minnesota/D09-25104/2009 (A/H3N2) segment 2 (PB1) 3746.1 0.000000e+00 2193/2275 (96%) EPI492020 A/swine/Iowa/SG1290/2007 (A/H1N2) segment 2 (PB1) 3746.1 0.000000e+00 2195/2277 (96%) EPI488914 A/swine/Arkansas/SG1323/2009 (A/H1N1) segment 2 (PB1) 3746.1 0.000000e+00 2194/2276 (96%) EPI337551 A/swine/Minnesota/00484/2005 (A/H3N2) segment 2 (PB1) 3746.1 0.000000e+00 2194/2276 (96%) EPI337535 A/swine/Minnesota/001332/2006 (A/H3N2) segment 2 (PB1) 3746.1 0.000000e+00 2195/2277 (96%) EPI177842 A/swine/Minnesota/2411/2007 (A/H1N2) segment 2 (PB1) 3746.1 0.000000e+00 2196/2278 (96%) EPI488746 A/swine/North Carolina/01930/2007 (A/H3N2) segment 2 (PB1) 3742.4 0.000000e+00 2191/2273 (96%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824772 A/Michigan/83/2016 (A/H3N2) segment 1 (PB2) 4178.2 0.000000e+00 2263/2264 (99%) EPI824762 A/Michigan/82/2016 (A/H3N2) segment 1 (PB2) 4178.2 0.000000e+00 2264/2264 (100%) EPI824754 A/Ohio/28/2016 (A/H3N2) segment 1 (PB2) 4172.7 0.000000e+00 2262/2264 (99%) EPI824746 A/Ohio/27/2016 (A/H3N2) segment 1 (PB2) 4172.7 0.000000e+00 2262/2264 (99%) EPI467756 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 1 (PB2) 4056.4 0.000000e+00 2241/2264 (98%) EPI468742 A/swine/Illinois/A01432127/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI446883 A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI446875 A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI446859 A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI446826 A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI401654 A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI398539 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI398531 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI398523 A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI398001 A/Ohio/84/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI397967 A/Wisconsin/34/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI397680 A/Wisconsin/31/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI397679 A/Wisconsin/29/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI397678 A/Ohio/86/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI396189 A/Ohio/77/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI395953 A/swine/Indiana/A00968379/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI395871 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI395863 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI394946 A/Ohio/64/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI394074 A/Wisconsin/27/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI393779 A/Ohio/74/2012 (A/H3N2) segment 1 (PB2) 4050.8 0.000000e+00 2240/2264 (98%) EPI397683 A/Ohio/57/2012 (A/H3N2) segment 1 (PB2) 4047.1 0.000000e+00 2239/2264 (98%) EPI414175 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI401712 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI401656 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI398035 A/Ohio/69/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI398002 A/Ohio/88/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI397995 A/Hawaii/03/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI397675 A/Ohio/79/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI397537 A/Ohio/56/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI397437 A/Wisconsin/30/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI396267 A/Indiana/133/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI395945 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI395937 A/swine/Indiana/A00968373/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI395737 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI395274 A/Ohio/75/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI394934 A/Ohio/23/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI394930 A/Wisconsin/23/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI394910 A/Indiana/132/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI392753 A/Indiana/14/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI392745 A/Wisconsin/22/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI392732 A/Pennsylvania/13/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI378520 A/Indiana/09/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI378512 A/Indiana/07/2012 (A/H3N2) segment 1 (PB2) 4045.3 0.000000e+00 2239/2264 (98%) EPI397676 A/Ohio/80/2012 (A/H3N2) segment 1 (PB2) 4041.6 0.000000e+00 2238/2264 (98%) EPI397423 A/Minnesota/15/2012 (A/H3N2) segment 1 (PB2) 4041.6 0.000000e+00 2238/2264 (98%) EPI467752 A/swine/Iowa/A01244302/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI451220 A/swine/Ohio/A01208180/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI451199 A/swine/Alabama/A01104056/2012 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI443538 A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI443530 A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI443514 A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI443506 A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI424070 A/swine/Michigan/A01259003/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI401612 A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI398036 A/Ohio/19/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397996 A/Ohio/17/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397748 A/Ohio/87/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397674 A/Ohio/63/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397545 A/Ohio/83/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397338 A/Illinois/11/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI396184 A/Pennsylvania/17/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI396169 A/Wisconsin/28/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI395924 A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI395916 A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI395878 A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI395855 A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI394915 A/Ohio/28/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI394904 A/Ohio/62/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI393674 A/Ohio/15/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI393508 A/Ohio/52/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI393293 A/Ohio/16/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI393292 A/Ohio/14/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI392749 A/Ohio/20/2012 (A/H3N2) segment 1 (PB2) 4039.7 0.000000e+00 2238/2264 (98%) EPI397998 A/Ohio/18/2012 (A/H3N2) segment 1 (PB2) 4036.0 0.000000e+00 2237/2264 (98%) EPI392931 A/Minnesota/11/2012 (A/H3N2) segment 1 (PB2) 4036.0 0.000000e+00 2234/2259 (98%) EPI381870 A/Hawaii/03/2012 (A/H3N2) segment 1 (PB2) 4036.0 0.000000e+00 2234/2259 (98%) EPI378507 A/Indiana/07/2012 (A/H3N2) segment 1 (PB2) 4036.0 0.000000e+00 2234/2259 (98%) EPI694174 A/swine/Kentucky/D0385/2013 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI550133 A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI493685 A/swine/Iowa/13E045/2013 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI446923 A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI446915 A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI446867 A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI446834 A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI446796 A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI443554 A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI443546 A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI443522 A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI433518 A/swine/Iowa/A01267939/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI433302 A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI433294 A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI398515 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI398497 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397999 A/Ohio/37/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397936 A/Ohio/41/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397914 A/Indiana/18/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397673 A/Ohio/36/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397651 A/Indiana/104/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397529 A/Ohio/47/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397215 A/Indiana/125/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397096 A/Indiana/103/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI397093 A/Ohio/34/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI396259 A/Indiana/127/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI396251 A/Indiana/126/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI396227 A/Indiana/147/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI396221 A/Indiana/57/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI396205 A/Indiana/149/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI396180 A/Indiana/77/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395880 A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395729 A/swine/Indiana/A01104030/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395722 A/swine/Indiana/A01104029/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395715 A/swine/Indiana/A01104023/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395709 A/swine/Indiana/A01104016/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395297 A/West Virginia/09/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395294 A/West Virginia/16/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395293 A/West Virginia/10/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI395256 A/Ohio/35/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI393516 A/Indiana/65/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI392751 A/Indiana/16/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI388356 A/Indiana/21/2012 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI346490 A/West Virginia/06/2011 (A/H3N2) segment 1 (PB2) 4034.2 0.000000e+00 2237/2264 (98%) EPI451226 A/swine/Ohio/A01208181/2012 (A/H3N2) segment 1 (PB2) 4032.4 0.000000e+00 2236/2264 (98%) EPI397401 A/Indiana/99/2012 (A/H3N2) segment 1 (PB2) 4030.5 0.000000e+00 2236/2264 (98%) EPI397382 A/Indiana/138/2012 (A/H3N2) segment 1 (PB2) 4030.5 0.000000e+00 2236/2264 (98%) EPI397237 A/Ontario/N163578/2012(H1N1v) (A/H1N1) segment 1 (PB2) 4030.5 0.000000e+00 2236/2264 (98%) EPI381854 A/Ohio/13/2012 (A/H3N2) segment 1 (PB2) 4030.5 0.000000e+00 2233/2259 (98%) EPI653961 A/swine/Kansas/A01377243/2014 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI653952 A/swine/North Carolina/A01410354/2014 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI641729 A/swine/North Carolina/A01410047/2013 (A/H1N1) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI530363 A/swine/Indiana/A00968364/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI502432 A/swine/Indiana/A01260093/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI502427 A/swine/Indiana/A01260109/2012 (A/H1N1) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI468732 A/swine/Ohio/A01349305/2013 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2237/2265 (98%) EPI467747 A/swine/Illinois/A01244401/2012 (A/H1N1) segment 1 (PB2) 4028.7 0.000000e+00 2237/2265 (98%) EPI441115 A/swine/Indiana/A00968380/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI433538 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI433530 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI433503 A/swine/Ohio/25/2012 (A/H1N1) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI401671 A/swine/Ohio/A00138552/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI401620 A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI398489 A/swine/Maryland/A01104048/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI398476 A/swine/Maryland/A01104040/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI397659 A/Maryland/28/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI397521 A/Ohio/44/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI397429 A/Ohio/81/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI397104 A/Indiana/115/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2237/2265 (98%) EPI395888 A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI395295 A/Ohio/38/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI395284 A/Ohio/71/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2236/2264 (98%) EPI381846 A/Indiana/12/2012 (A/H3N2) segment 1 (PB2) 4028.7 0.000000e+00 2234/2261 (98%) EPI393534 A/Indiana/59/2012 (A/H3N2) segment 1 (PB2) 4026.8 0.000000e+00 2235/2264 (98%) EPI397207 A/Ohio/78/2012 (A/H3N2) segment 1 (PB2) 4025.0 0.000000e+00 2235/2264 (98%) EPI395248 A/Indiana/152/2012 (A/H3N2) segment 1 (PB2) 4025.0 0.000000e+00 2232/2259 (98%) EPI388287 A/Indiana/17/2012 (A/H3N2) segment 1 (PB2) 4025.0 0.000000e+00 2232/2259 (98%) EPI388279 A/Indiana/13/2012 (A/H3N2) segment 1 (PB2) 4025.0 0.000000e+00 2232/2259 (98%) EPI596360 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI548335 A/swine/Iowa/A01445629/2013 (A/H1N1) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI468623 A/swine/Maryland/A01319694/2013 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI467651 A/swine/Kansas/A01104059/2013 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI467346 A/swine/Illinois/A01158994/2013 (A/H1N1) segment 1 (PB2) 4023.1 0.000000e+00 2236/2265 (98%) EPI459157 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI424094 A/swine/Indiana/A01260029/2012 (A/H1N1) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI414167 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI404887 A/Iowa/16/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI404187 A/Iowa/16/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI401616 A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI398406 A/Indiana/15/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI397951 A/Ohio/85/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI397756 A/Wisconsin/35/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI397508 A/Indiana/90/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI396296 A/Maryland/23/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI396211 A/Indiana/113/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI395291 A/Maryland/25/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI395264 A/Ohio/65/2012 (A/H3N2) segment 1 (PB2) 4023.1 0.000000e+00 2235/2264 (98%) EPI392923 A/Maryland/20/2012 (A/H3N2) segment 1 (PB2) 4021.3 0.000000e+00 2234/2263 (98%) EPI678474 A/swine/North Carolina/A01476787/2014 (A/H1N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI548207 A/swine/Nebraska/A01445765/2013 (A/H1N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI468670 A/swine/Nebraska/A01327160/2012 (A/H1N1) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI467897 A/swine/Ohio/A01349485/2013 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2235/2265 (98%) EPI397682 A/Ohio/43/2012 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI397652 A/Indiana/150/2012 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI397409 A/Michigan/16/2012 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI397393 A/Indiana/93/2012 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI397375 A/Indiana/123/2012 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI388351 A/Indiana/20/2012 (A/H3N2) segment 1 (PB2) 4017.6 0.000000e+00 2234/2264 (98%) EPI416851 A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 1 (PB2) 4013.9 0.000000e+00 2233/2264 (98%) EPI691587 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI516841 A/Iowa/04/2013 (A/H3N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI461380 A/swine/Ohio/11SW238/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459601 A/swine/Ohio/11SW144/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459593 A/swine/Ohio/11SW121/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459585 A/swine/Ohio/11SW127/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459567 A/swine/Ohio/11SW230/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459558 A/swine/Ohio/11SW349/2011 (A/H3N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459514 A/swine/Ohio/11SW223/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459482 A/swine/Ohio/11SW133/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI459460 A/swine/Ohio/11SW344/2011 (A/H3N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415972 A/swine/Ohio/11SW347/2011 (A/H3N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415964 A/swine/Ohio/11SW240/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415956 A/swine/Ohio/11SW239/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415948 A/swine/Ohio/11SW237/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415940 A/swine/Ohio/11SW236/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415932 A/swine/Ohio/11SW235/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415924 A/swine/Ohio/11SW234/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415910 A/swine/Ohio/11SW231/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415902 A/swine/Ohio/11SW229/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415894 A/swine/Ohio/11SW228/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415886 A/swine/Ohio/11SW227/2011 (A/H0) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415877 A/swine/Ohio/11SW226/2011 (A/H0) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415859 A/swine/Ohio/11SW224/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415851 A/swine/Ohio/11SW221/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415844 A/swine/Ohio/11SW220/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415487 A/swine/Ohio/11SW146/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415479 A/swine/Ohio/11SW140/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415471 A/swine/Ohio/11SW139/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415463 A/swine/Ohio/11SW138/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415455 A/swine/Ohio/11SW137/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415447 A/swine/Ohio/11SW136/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415439 A/swine/Ohio/11SW135/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415431 A/swine/Ohio/11SW134/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415423 A/swine/Ohio/11SW132/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415409 A/swine/Ohio/11SW131/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415401 A/swine/Ohio/11SW130/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415393 A/swine/Ohio/11SW129/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415385 A/swine/Ohio/11SW128/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415377 A/swine/Ohio/11SW126/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415369 A/swine/Ohio/11SW125/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415363 A/swine/Ohio/11SW124/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415355 A/swine/Ohio/11SW123/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI415347 A/swine/Ohio/11SW122/2011 (A/H1N2) segment 1 (PB2) 4012.0 0.000000e+00 2233/2264 (98%) EPI388295 A/Indiana/19/2012 (A/H3N2) segment 1 (PB2) 4008.4 0.000000e+00 2229/2259 (98%) EPI550007 A/swine/Texas/13TOSU0049/2013 (A/H1N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI549986 A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI548323 A/swine/Minnesota/A01443619/2013 (A/H1N1) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI547372 A/swine/Indiana/13TOSU1986/2013 (A/H0) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI468737 A/swine/Indiana/A01260254/2013 (A/H3N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI467634 A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI433524 A/swine/Indiana/A01260041/2012 (A/H3N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI415916 A/swine/Ohio/11SW232/2011 (A/H1N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI415868 A/swine/Ohio/11SW225/2011 (A/H1N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI415818 A/swine/Ohio/11SW216/2011 (A/H1N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI415751 A/swine/Ohio/11SW205/2011 (A/H1N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI415521 A/swine/Ohio/11SW168/2011 (A/H0) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%) EPI394942 A/Maryland/22/2012 (A/H3N2) segment 1 (PB2) 4006.5 0.000000e+00 2232/2264 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824770 A/Michigan/83/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 970/970 (100%) EPI824760 A/Michigan/82/2016 (A/H3N2) segment 7 (MP) 1792.4 0.000000e+00 970/970 (100%) EPI824752 A/Ohio/28/2016 (A/H3N2) segment 7 (MP) 1790.5 0.000000e+00 969/969 (100%) EPI824744 A/Ohio/27/2016 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 969/970 (99%) EPI736810 A/swine/Iowa/A01730123/2016 (A/H1N2) segment 7 (MP) 1781.3 0.000000e+00 968/970 (99%) EPI813573 A/swine/Iowa/A01775848/2016 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI806659 A/swine/Iowa/A01776136/2016 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI760193 A/swine/Iowa/A01733867/2016 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI760175 A/swine/Iowa/A01733965/2016 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI711745 A/swine/North Carolina/A01728953/2016 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI703980 A/swine/Iowa/A01796498/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI703779 A/swine/Iowa/A01797426/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI687602 A/swine/Minnesota/A01941094/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI620474 A/swine/Iowa/A01847868/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI593909 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI573494 A/swine/Missouri/A01840170/2014 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI573474 A/swine/Missouri/A01840163/2014 (A/H3N2) segment 7 (MP) 1775.8 0.000000e+00 967/970 (99%) EPI704591 A/swine/Iowa/A01728010/2015 (A/H3N2) segment 7 (MP) 1770.2 0.000000e+00 966/970 (99%) EPI612497 A/swine/Missouri/A01847626/2015 (A/H3N2) segment 7 (MP) 1770.2 0.000000e+00 966/970 (99%) EPI760253 A/swine/Minnesota/A01676585/2016 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI703871 A/swine/Illinois/A01796457/2015 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI703773 A/swine/Missouri/A01798099/2015 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI684578 A/swine/Missouri/A01795668/2015 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI678556 A/swine/Iowa/A01944136/2015 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI641407 A/swine/Missouri/A01822838/2015 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI612531 A/swine/Missouri/A01554556/2015 (A/H3N2) segment 7 (MP) 1759.1 0.000000e+00 964/970 (99%) EPI653899 A/swine/Missouri/A01770005/2015 (A/H3N2) segment 7 (MP) 1753.6 0.000000e+00 963/970 (99%) EPI590778 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 7 (MP) 1753.6 0.000000e+00 963/970 (99%) EPI623662 A/swine/Iowa/A02077646/2015 (A/H3N2) segment 7 (MP) 1748.1 0.000000e+00 962/970 (99%) EPI559562 A/swine/Iowa/A01476500/2013 (A/H3N1) segment 7 (MP) 1748.1 0.000000e+00 962/970 (99%) EPI534889 A/swine/USA/2013028053/2013 (A/H3N1) segment 7 (MP) 1748.1 0.000000e+00 962/970 (99%) EPI559547 A/swine/Missouri/A01476458/2013 (A/H3N1) segment 7 (MP) 1742.5 0.000000e+00 961/970 (99%) EPI559511 A/swine/Iowa/A01476471/2014 (A/H3N1) segment 7 (MP) 1737.0 0.000000e+00 960/970 (98%) EPI573050 A/swine/Iowa/A01555108/2014 (A/H3N1) segment 7 (MP) 1731.4 0.000000e+00 959/970 (98%) EPI559520 A/swine/Iowa/A01476696/2014 (A/H3N1) segment 7 (MP) 1731.4 0.000000e+00 959/970 (98%) EPI663551 A/swine/Illinois/A01203923/2012 (A/H1N1) segment 7 (MP) 1725.9 0.000000e+00 958/970 (98%) EPI559574 A/swine/Iowa/A01476501/2014 (A/H3N1) segment 7 (MP) 1725.9 0.000000e+00 958/970 (98%) EPI559505 A/swine/Iowa/A01476697/2014 (A/H3N1) segment 7 (MP) 1725.9 0.000000e+00 958/970 (98%) EPI534892 A/swine/USA/2014001372/2014 (A/H3N1) segment 7 (MP) 1725.9 0.000000e+00 958/970 (98%) EPI406547 A/swine/Illinois/A01203922/2012 (A/H1N1) segment 7 (MP) 1725.9 0.000000e+00 958/970 (98%) EPI559592 A/swine/Missouri/A01476459/2012 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 954/970 (98%) EPI743968 A/Cambodia/W1023349/2012 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI405701 A/Viet Nam/12032005/2009 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI338513 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI332028 A/District of Columbia/INS527/2010 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI324826 A/swine/Iowa/A01049239/2010 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI310140 A/Vietnam/57/2010 (A/H1N1 pdm09) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI308288 A/Cape May/WRAIR1653P/2009 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI308176 A/New Jersey/WRAIR1504P/2009 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI308136 A/New Jersey/WRAIR1499P/2009 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI258189 A/Guangxi-Longan/SWL11023/2010 (A/H1N1 pdm09) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI240323 A/Florida/31/2009 (A/H1N1 pdm09) segment 7 (MP) 1698.2 0.000000e+00 953/970 (98%) EPI692883 A/England/00380719/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI635061 A/Singapore/DMS78/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI590133 A/Dundgobi/381/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI559297 A/swine/Minnesota/36-1008/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI559289 A/swine/Minnesota/36-1005/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI559265 A/swine/Minnesota/36-1020/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI559263 A/swine/Minnesota/36-1026/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI559259 A/swine/Minnesota/36-1012/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI544916 A/canine/Korea/VC125678/2012 (A/H3N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI544909 A/canine/Korea/VC123578/2012 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI544902 A/canine/Korea/VC378/2012 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI537971 A/North Dakota/20/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI509534 A/swine/Iowa/A01410129/2014 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI476500 A/swine/Iowa/A01432991/2013 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI471745 A/swine/Thailand/LB160/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI471737 A/swine/Thailand/LB159/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI471721 A/swine/Thailand/LB158/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI471697 A/swine/Thailand/LB164/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI460108 A/canine/Korea/MV1/2012 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI457519 A/swine/Kansas/13-108011/2013 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405733 A/Viet Nam/001-1889/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405717 A/Viet Nam/001-1716/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405709 A/Viet Nam/001-1424/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405677 A/Viet Nam/11032017/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405653 A/Viet Nam/11032006/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405645 A/Viet Nam/11032001/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405562 A/Viet Nam/13032074/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405554 A/Viet Nam/13032071/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405540 A/Viet Nam/13032060/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405524 A/Viet Nam/13032051/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405508 A/Viet Nam/13032044/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405500 A/Viet Nam/13032040/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405476 A/Viet Nam/13032035/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405453 A/Viet Nam/13032016/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405437 A/Viet Nam/13032011/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405429 A/Viet Nam/13032009/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405421 A/Viet Nam/13032008/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405405 A/Viet Nam/13032001/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI405320 A/Viet Nam/001-1890/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI404197 A/Viet Nam/15032002/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI399552 A/swine/Minnesota/A01300999/2012 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI399490 A/swine/Minnesota/A01301000/2012 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI398128 A/swine/Iowa/A01203809/2012 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI392378 A/Scotland/Paisley_413960/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI392371 A/Scotland/Paisley_412182/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI392332 A/Scotland/Glasgow_443734/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI392031 A/Scotland/Edinburgh_23151/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI391458 A/swine/Iowa/A01203126/2012 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI391457 A/swine/Iowa/A01203125/2012 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI391335 A/swine/Iowa/A01202727/2011 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI391092 A/swine/Iowa/A01202083/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI390976 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI390968 A/swine/Iowa/A01049451/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI390877 A/swine/Iowa/A01203331/2012 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI387018 A/Scotland/Dundee_09V500795/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI384357 A/swine/USA/A01076112/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 950/967 (98%) EPI384350 A/swine/USA/A01076111/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 950/967 (98%) EPI384276 A/swine/Illinois/A01076954/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 950/967 (98%) EPI380533 A/Singapore/ON2269/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI379291 A/Singapore/GP4218/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI379261 A/Singapore/GP4000/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI379104 A/Singapore/GP3093/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI378872 A/Singapore/GP2224/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI376273 A/Scotland/Paisley_425827/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI374144 A/Malaysia/2156796/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI371675 A/swine/Oklahoma/A01134908/2011 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI371669 A/swine/Minnesota/A01134333/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI371668 A/swine/Minnesota/A01134332/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI369074 A/swine/Minnesota/A01047604/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI367707 A/swine/Minnesota/A01240127/2011 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI367246 A/Dundgobi/0381/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI353670 A/swine/Mississippi/A01049443/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI351209 A/Hubei/99/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI351127 A/Zhejiang/87/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI351100 A/Zhejiang/84/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI347008 A/Hawaii/34/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI341735 A/swine/Iowa/A01049980/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI341734 A/swine/Illinois/A01049981/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI341733 A/swine/Iowa/A01202023/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI341725 A/swine/Iowa/A01202063/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338524 A/swine/Iillinois/A01049871/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338523 A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338521 A/swine/Iowa/A01049894/2011 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338484 A/swine/Iowa/A01049640/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338481 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338476 A/swine/Iowa/A01049718/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338473 A/swine/Iowa/A01049723/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338471 A/swine/Iowa/A01049726/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338470 A/swine/Iowa/A01049728/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI338466 A/swine/Iowa/A01049858/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI332905 A/Pune/NIV0953725/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI330978 A/New Mexico/07/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI324839 A/swine/Iowa/A01049450/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI324447 A/Illinois/NHRC0001/2011 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI320221 A/Bretagne/7639/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI320088 A/New Mexico/06/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI320080 A/New Mexico/05/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI320072 A/New Mexico/04/2011 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI316968 A/canine/Korea/1/2010 (A/H3N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI316959 A/swine/Iowa/A01049037/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI315847 A/swine/South Dakota/6/2011 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI313323 A/Texas/45034240/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI312700 A/swine/Minnesota/239106/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI312684 A/swine/Minnesota/226128/2010 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI312652 A/swine/Indiana/240218/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI308721 A/Berlin/INS362/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI308496 A/Budapest/WRAIR2393T/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI308184 A/New Jersey/WRAIR1506P/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI307831 A/swine/South Dakota/4/2010 (A/H1N2) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI302150 A/New York/11/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI302130 A/California/31/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI295406 A/Massachusetts/03/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI295319 A/swine/Minnesota/165A/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI295311 A/swine/Minnesota/136B/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI295298 A/swine/Minnesota/130A/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI295286 A/swine/Minnesota/074A/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI286654 A/IWATE/1031/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI282946 A/San Diego/WR1627P/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI280290 A/Colombia/6868/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI278691 A/KOBE/181/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI278685 A/OKINAWA/41/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI278669 A/WAKAYAMA-C/19/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI277564 A/AICHI/116/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI277255 A/Bangkok/INS426/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI274988 A/Guam/NHRC0028/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI273624 A/Arizona/03/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272883 A/Lisboa/162/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272868 A/Lisboa/140/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272640 A/YOKOHAMA/67/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272637 A/YAMAGUCHI/23/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272610 A/OITA/57/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272601 A/KANAGAWA/61/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272589 A/WAKAYAMA/34/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI272580 A/KUMAMOTO/20/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI271955 A/GOROKA/9/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI271414 A/Madrid/INS225/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI271358 A/District of Columbia/INS228/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI271294 A/Bonn/INS284/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI270672 A/California/VRDL7/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI270600 A/California/VRDL130/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI270000 A/Ulaanbaatar/6525/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI269869 A/Guam/2123/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI258259 A/Hubei-Wuchang/SWL145/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI257797 A/Shanghai-Luwan/SWL143/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI257705 A/Hunan-Yuhua/SWL169/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI257673 A/Ningxia-Xingqing/SWL176/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI257164 A/KAGOSHIMA/56/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI256551 A/Liaoning-Shuncheng/SWL1148/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI256407 A/Guangxi-Bamayaozuzizhi/SWL46/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI255005 A/New York/7019/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI254749 A/California/VRDL85/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI254044 A/Wisconsin/66/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI253085 A/Texas/JMS414/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI253061 A/Texas/JMS411/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI252821 A/Texas/JMS372/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI252693 A/Texas/46223582/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI249713 A/Texas/JMS376/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI249255 A/Wisconsin/629-D00780/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI248173 A/Wisconsin/629-D01434/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI248165 A/Wisconsin/629-D01412/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI248133 A/Wisconsin/629-D01346/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI247981 A/Wisconsin/629-D00802/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI247861 A/Wisconsin/629-D00346/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI247237 A/California/02/2010 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI247023 A/Wisconsin/629-D02041/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI246751 A/New York/6257/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI246439 A/Copenhagen/INS98/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI243891 A/Taiwan/1127/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI243816 A/Dundgobi/9746/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI240386 A/North Dakota/15/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI240369 A/Minnesota/21/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI240335 A/Hawaii/30/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI240329 A/Hawaii/28/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI239650 A/Minnesota/24/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI239644 A/Vietnam/3305/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI239617 A/Wisconsin/60/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI239611 A/Minnesota/18/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI239608 A/Minnesota/23/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI237289 A/California/VRDL68/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI237041 A/California/VRDL26/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI234575 A/swine/IL/32974/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI234430 A/swine/IN/27007/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI234415 A/Bayanulgii/9912/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI234413 A/Unmugobi/9586/2009 (A/H1N1) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI232901 A/Hawaii/27/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI231443 A/Wisconsin/55/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI231388 A/Minnesota/17/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI230508 A/swine/Italy/290271/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI227851 A/Ulaanbaatar/5974/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI227749 A/Nigeria/944/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI227711 A/Minnesota/15/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI227691 A/Maryland/30/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI226347 A/OKINAWA/259/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI226283 A/NIIGATA/871/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI226251 A/NIIGATA-C/56/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI226219 A/Mongolia/JP5759/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI226211 A/Mongolia/JP5701/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%) EPI226203 A/Mongolia/JP5699/2009 (A/H1N1 pdm09) segment 7 (MP) 1692.7 0.000000e+00 952/970 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824764 A/Michigan/82/2016 (A/H3N2) segment 6 (NA) 2512.6 0.000000e+00 1360/1360 (100%) EPI824774 A/Michigan/83/2016 (A/H3N2) segment 6 (NA) 2507.0 0.000000e+00 1359/1360 (99%) EPI824748 A/Ohio/27/2016 (A/H3N2) segment 6 (NA) 2505.2 0.000000e+00 1358/1359 (99%) EPI824756 A/Ohio/28/2016 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1342/1342 (100%) EPI760192 A/swine/Iowa/A01733867/2016 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1354/1360 (99%) EPI711744 A/swine/North Carolina/A01728953/2016 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1354/1360 (99%) EPI704590 A/swine/Iowa/A01728010/2015 (A/H3N2) segment 6 (NA) 2479.3 0.000000e+00 1354/1360 (99%) EPI813572 A/swine/Iowa/A01775848/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1353/1360 (99%) EPI806654 A/swine/Iowa/A01776136/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1353/1360 (99%) EPI760174 A/swine/Iowa/A01733965/2016 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1353/1360 (99%) EPI703979 A/swine/Iowa/A01796498/2015 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1353/1360 (99%) EPI687601 A/swine/Minnesota/A01941094/2015 (A/H3N2) segment 6 (NA) 2473.8 0.000000e+00 1353/1360 (99%) EPI760254 A/swine/Minnesota/A01676585/2016 (A/H3N2) segment 6 (NA) 2468.2 0.000000e+00 1352/1360 (99%) EPI703778 A/swine/Iowa/A01797426/2015 (A/H3N2) segment 6 (NA) 2468.2 0.000000e+00 1352/1360 (99%) EPI736809 A/swine/Iowa/A01730123/2016 (A/H1N2) segment 6 (NA) 2462.7 0.000000e+00 1351/1360 (99%) EPI682718 A/swine/Illinois/A01795739/2015 (A/H3N2) segment 6 (NA) 2462.7 0.000000e+00 1351/1360 (99%) EPI718288 A/swine/Iowa/A01729570/2016 (A/H3N2) segment 6 (NA) 2457.2 0.000000e+00 1350/1360 (99%) EPI813533 A/swine/Iowa/A01775597/2016 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1348/1360 (99%) EPI778234 A/swine/Iowa/A01895860/2016 (A/H3N2) segment 6 (NA) 2447.9 0.000000e+00 1348/1360 (99%) EPI682710 A/swine/Iowa/A01795441/2015 (A/H0) segment 6 (NA) 2446.1 0.000000e+00 1348/1360 (99%) EPI492971 A/swine/Iowa/A01394642/2013 (A/H1N2) segment 6 (NA) 2446.1 0.000000e+00 1348/1360 (99%) EPI532371 A/swine/Iowa/A01410694/2014 (A/H1N2) segment 6 (NA) 2440.5 0.000000e+00 1347/1360 (99%) EPI600339 A/swine/Minnesota/A01555013/2014 (A/H1N2) segment 6 (NA) 2435.0 0.000000e+00 1346/1360 (98%) EPI505054 A/swine/Iowa/A01410020/2013 (A/H1N2) segment 6 (NA) 2435.0 0.000000e+00 1346/1360 (98%) EPI438207 A/swine/Virginia/A01432419/2013 (A/H1N2) segment 6 (NA) 2429.5 0.000000e+00 1345/1360 (98%) EPI531015 A/swine/Iowa/A01410614/2014 (A/H1N2) segment 6 (NA) 2407.3 0.000000e+00 1341/1360 (98%) EPI600444 A/swine/Iowa/A01476969/2014 (A/H0) segment 6 (NA) 2401.8 0.000000e+00 1340/1360 (98%) EPI597638 A/swine/Iowa/A01476860/2014 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1340/1360 (98%) EPI489142 A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1340/1360 (98%) EPI489072 A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1340/1360 (98%) EPI384372 A/swine/Ohio/A01076765/2010 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1340/1360 (98%) EPI338590 A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA) 2401.8 0.000000e+00 1340/1360 (98%) EPI612730 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI600304 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI506435 A/swine/Indiana/A00968332/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI489086 A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI406615 A/swine/Illinois/A01270490/2012 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI398673 A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI384613 A/swine/Illinois/A01116186/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI347198 A/swine/Ohio/FAH10-1/2010 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI338569 A/swine/Indiana/A01049953/2011 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI298488 A/swine/South Dakota/3/2010 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI298485 A/swine/South Dakota/2/2010 (A/H1N2) segment 6 (NA) 2396.2 0.000000e+00 1339/1360 (98%) EPI291863 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2392.5 0.000000e+00 1337/1358 (98%) EPI615423 A/swine/Illinois/A01134578/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI600402 A/swine/Iowa/A01476914/2014 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI559398 A/swine/Indiana/28-0202/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI559388 A/swine/Indiana/28-0210/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI559340 A/swine/Indiana/28-0410/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI559314 A/swine/Indiana/28-0415/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI559310 A/swine/Indiana/28-0419/2011 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI559298 A/swine/Indiana/28-0223/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI490779 A/swine/Arkansas/SG1382/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI490769 A/swine/Arkansas/SG1379/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI489156 A/swine/Indiana/04254/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI489079 A/swine/Arkansas/SG1377/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI489065 A/swine/Arkansas/SG1375/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI399610 A/swine/Pennsylvania/A01076779/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI399563 A/swine/Pennsylvania/A01076777/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI399461 A/swine/Illinois/A01300356/2012 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI395981 A/swine/Virginia/A01203711/2012 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI390950 A/swine/Ohio/A01049357/2010 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI384578 A/swine/Illinois/A01116719/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI384530 A/swine/Illinois/A01134851/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI384527 A/swine/Illinois/A01201430/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI384491 A/swine/Ohio/A01116888/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI384424 A/swine/Illinois/A00907727/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI376208 A/swine/Ohio/FAH11-1/2010 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI371681 A/swine/Ohio/A01116890/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI369160 A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI369159 A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI369156 A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI347612 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI314799 A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI314797 A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI291871 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI291869 A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA) 2390.7 0.000000e+00 1338/1360 (98%) EPI669267 A/swine/Minnesota/A01940176/2015 (A/H3N2) segment 6 (NA) 2388.8 0.000000e+00 1337/1360 (98%) EPI653871 A/swine/Illinois/A00857134/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI653860 A/swine/Illinois/A00857131/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI653771 A/swine/Illinois/A00857129/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI615595 A/swine/Illinois/A01134579/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI559278 A/swine/Indiana/28-0403/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI489100 A/swine/Arkansas/SG1384/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI415678 A/swine/Ohio/11SW195/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI415266 A/swine/Ohio/11SW115/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI401368 A/swine/Minnesota/A01203677/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI401173 A/swine/Illinois/A01270461/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1338/1361 (98%) EPI401110 A/swine/Illinois/A01301847/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1338/1361 (98%) EPI399005 A/swine/Illinois/A01125988/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI398879 A/swine/Illinois/A01301474/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1338/1361 (98%) EPI398560 A/swine/Illinois/A01301838/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1338/1361 (98%) EPI398506 A/swine/Illinois/A01270167/2012 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI391418 A/swine/Iowa/A01202879/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI391384 A/swine/Iowa/A01202878/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI391128 A/swine/Iowa/A01202639/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI391122 A/swine/Iowa/A01202529/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI390782 A/swine/Minnesota/A01076122/2010 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI384551 A/swine/Illinois/A01134656/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI384427 A/swine/Illinois/A01201927/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI384415 A/swine/Illinois/A01047397/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI384336 A/swine/Minnesota/A01116364/2010 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI371301 A/swine/Illinois/A01201919/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI369157 A/swine/Illinois/A01134581/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI369050 A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI369039 A/swine/Illinois/A00857138a/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI369024 A/swine/Illinois/A00857300/2011 (A/H0) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI367809 A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI351656 A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI338567 A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI338447 A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA) 2385.1 0.000000e+00 1337/1360 (98%) EPI399602 A/swine/Illinois/A01240908/2012 (A/H3N2) segment 6 (NA) 2381.5 0.000000e+00 1336/1360 (98%) EPI341756 A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA) 2381.5 0.000000e+00 1336/1360 (98%) EPI615608 A/swine/Illinois/A01047046/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI615557 A/swine/Illinois/A01047045/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI615550 A/swine/Illinois/A01047044/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI506479 A/swine/Indiana/A00968358/2012 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI461426 A/swine/Ohio/11SW233/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI461419 A/swine/Ohio/11SW149/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI461393 A/swine/Ohio/11SW208/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459606 A/swine/Ohio/11SW144/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459598 A/swine/Ohio/11SW121/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459590 A/swine/Ohio/11SW127/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459534 A/swine/Ohio/11SW349/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459495 A/swine/Ohio/11SW162/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459487 A/swine/Ohio/11SW133/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI459465 A/swine/Ohio/11SW344/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415967 A/swine/Ohio/11SW347/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415831 A/swine/Ohio/11SW218/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415822 A/swine/Ohio/11SW217/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415797 A/swine/Ohio/11SW213/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415772 A/swine/Ohio/11SW209/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415713 A/swine/Ohio/11SW201/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415652 A/swine/Ohio/11SW189/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415642 A/swine/Ohio/11SW187/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415634 A/swine/Ohio/11SW186/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415626 A/swine/Ohio/11SW185/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415600 A/swine/Ohio/11SW180/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415565 A/swine/Ohio/11SW174/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415531 A/swine/Ohio/11SW170/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415523 A/swine/Ohio/11SW169/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415516 A/swine/Ohio/11SW168/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415506 A/swine/Ohio/11SW166/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415490 A/swine/Ohio/11SW161/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415482 A/swine/Ohio/11SW146/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415474 A/swine/Ohio/11SW140/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415466 A/swine/Ohio/11SW139/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415458 A/swine/Ohio/11SW138/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415450 A/swine/Ohio/11SW137/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415442 A/swine/Ohio/11SW136/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415434 A/swine/Ohio/11SW135/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415426 A/swine/Ohio/11SW134/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415412 A/swine/Ohio/11SW132/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415404 A/swine/Ohio/11SW131/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415396 A/swine/Ohio/11SW130/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415388 A/swine/Ohio/11SW129/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415380 A/swine/Ohio/11SW128/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415372 A/swine/Ohio/11SW126/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415366 A/swine/Ohio/11SW125/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415358 A/swine/Ohio/11SW124/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415350 A/swine/Ohio/11SW123/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415342 A/swine/Ohio/11SW122/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415290 A/swine/Ohio/11SW87/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415274 A/swine/Ohio/11SW118/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI415234 A/swine/Ohio/11SW109/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI408295 A/swine/Illinois/A01271599/2012 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI401146 A/swine/North Carolina/A01270509/2012 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI399143 A/swine/Illinois/A01241630/2012 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI398914 A/swine/Illinois/A01134651/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI391124 A/swine/Iowa/A01202573/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI391090 A/swine/Indiana/A01202632/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI391089 A/swine/Indiana/A01202631/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI390956 A/swine/Minnesota/A01049404/2011 (A/H0) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI390951 A/swine/Ohio/A01049382/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI384524 A/swine/Illinois/A01134580/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI384440 A/swine/Illinois/A01047360/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI384421 A/swine/Illinois/A01047350/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI384398 A/swine/Illinois/A01047996/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI369161 A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI369158 A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI369066 A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI369058 A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367700 A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367692 A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367691 A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367690 A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367689 A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367688 A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367687 A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367686 A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367685 A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367684 A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367683 A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367682 A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367681 A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367680 A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367679 A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367678 A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367677 A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367674 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367673 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367672 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI367671 A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI344396 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI344388 A/Indiana/10/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI338597 A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI338596 A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI338583 A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI338451 A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI338449 A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA) 2379.6 0.000000e+00 1336/1360 (98%) EPI391210 A/swine/Indiana/A01202792/2011 (A/H1N2) segment 6 (NA) 2377.8 0.000000e+00 1335/1359 (98%) EPI384581 A/swine/Illinois/A01134702/2011 (A/H1N2) segment 6 (NA) 2377.8 0.000000e+00 1335/1360 (98%) EPI369171 A/swine/Illinois/A01201284/2011 (A/H1N2) segment 6 (NA) 2375.9 0.000000e+00 1335/1360 (98%) EPI778293 A/swine/Iowa/A01943075/2016 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI704874 A/swine/Iowa/A01941549/2015 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI584491 A/swine/Michigan/A01202035/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1336/1361 (98%) EPI502692 A/swine/Illinois/A01411080/2013 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI489093 A/swine/Arkansas/SG1383/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI467595 A/swine/Iowa/A01432878/2013 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI461385 A/swine/Ohio/11SW238/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI459572 A/swine/Ohio/11SW230/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI459527 A/swine/Ohio/11SW177/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI459519 A/swine/Ohio/11SW223/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI457170 A/swine/Ohio/11SW208/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI453432 A/swine/Korea/A18/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415959 A/swine/Ohio/11SW240/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415951 A/swine/Ohio/11SW239/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415943 A/swine/Ohio/11SW237/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415935 A/swine/Ohio/11SW236/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415927 A/swine/Ohio/11SW235/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415919 A/swine/Ohio/11SW234/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415911 A/swine/Ohio/11SW232/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415905 A/swine/Ohio/11SW231/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415897 A/swine/Ohio/11SW229/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415889 A/swine/Ohio/11SW228/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415881 A/swine/Ohio/11SW227/2011 (A/H0) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415872 A/swine/Ohio/11SW226/2011 (A/H0) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415863 A/swine/Ohio/11SW225/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415854 A/swine/Ohio/11SW224/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415847 A/swine/Ohio/11SW221/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415839 A/swine/Ohio/11SW220/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415813 A/swine/Ohio/11SW216/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415805 A/swine/Ohio/11SW215/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415788 A/swine/Ohio/11SW211/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415780 A/swine/Ohio/11SW210/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415746 A/swine/Ohio/11SW205/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415738 A/swine/Ohio/11SW204/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415721 A/swine/Ohio/11SW202/2011 (A/H1N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415694 A/swine/Ohio/11SW197/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%) EPI415660 A/swine/Ohio/11SW191/2011 (A/H3N2) segment 6 (NA) 2374.1 0.000000e+00 1335/1360 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI824775 A/Michigan/83/2016 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI824765 A/Michigan/82/2016 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 956/956 (100%) EPI824757 A/Ohio/28/2016 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI824749 A/Ohio/27/2016 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI704589 A/swine/Iowa/A01728010/2015 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI687600 A/swine/Minnesota/A01941094/2015 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI684577 A/swine/Missouri/A01795668/2015 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI620472 A/swine/Iowa/A01847868/2015 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI612507 A/swine/Iowa/A02076444/2015 (A/H0) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI612495 A/swine/Missouri/A01847626/2015 (A/H3N2) segment 4 (HA) 1762.8 0.000000e+00 955/956 (99%) EPI573472 A/swine/Missouri/A01840163/2014 (A/H3N2) segment 4 (HA) 1759.1 0.000000e+00 954/956 (99%) EPI778161 A/swine/Minnesota/A01677360/2016 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI703978 A/swine/Iowa/A01796498/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI703927 A/swine/Ohio/A01798226/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI703911 A/swine/Arkansas/A01798224/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI684571 A/swine/Arkansas/A01797067/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI682712 A/swine/Iowa/A01795441/2015 (A/H0) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI678578 A/swine/Arkansas/A01945350/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI678300 A/swine/Arkansas/A01945580/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI593907 A/swine/Missouri/A01840324/2015 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI573492 A/swine/Missouri/A01840170/2014 (A/H3N2) segment 4 (HA) 1757.3 0.000000e+00 954/956 (99%) EPI590787 A/swine/Missouri/A02076058/2015 (A/H3N2) segment 4 (HA) 1753.6 0.000000e+00 953/956 (99%) EPI736635 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI711743 A/swine/North Carolina/A01728953/2016 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI703777 A/swine/Iowa/A01797426/2015 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI684587 A/swine/Arkansas/A01797066/2015 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI682811 A/swine/Ohio/A01795737/2015 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI653896 A/swine/Missouri/A01770005/2015 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI641405 A/swine/Missouri/A01822838/2015 (A/H3N2) segment 4 (HA) 1751.7 0.000000e+00 953/956 (99%) EPI612529 A/swine/Missouri/A01554556/2015 (A/H3N2) segment 4 (HA) 1748.1 0.000000e+00 952/956 (99%) EPI813583 A/swine/Minnesota/A01677935/2016 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI760252 A/swine/Minnesota/A01676585/2016 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI718287 A/swine/Iowa/A01729570/2016 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI709871 A/swine/Ohio/A01728296/2015 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI704977 A/swine/Iowa/A01727249/2015 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI704891 A/swine/Minnesota/A01941510/2015 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI703771 A/swine/Missouri/A01798099/2015 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI684601 A/swine/Iowa/A01944889/2015 (A/H0) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI623660 A/swine/Iowa/A02077646/2015 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI590776 A/swine/Missouri/A01554378/2015 (A/H3N2) segment 4 (HA) 1746.2 0.000000e+00 952/956 (99%) EPI813532 A/swine/Iowa/A01775597/2016 (A/H3N2) segment 4 (HA) 1740.7 0.000000e+00 951/956 (99%) EPI703869 A/swine/Illinois/A01796457/2015 (A/H3N2) segment 4 (HA) 1740.7 0.000000e+00 951/956 (99%) EPI682820 A/swine/Indiana/A01796207/2015 (A/H3N2) segment 4 (HA) 1740.7 0.000000e+00 951/956 (99%) EPI682717 A/swine/Illinois/A01795739/2015 (A/H3N2) segment 4 (HA) 1740.7 0.000000e+00 951/956 (99%) EPI590779 A/swine/Missouri/A01554320/2015 (A/H0) segment 4 (HA) 1740.7 0.000000e+00 951/956 (99%) EPI778233 A/swine/Iowa/A01895860/2016 (A/H3N2) segment 4 (HA) 1737.0 0.000000e+00 950/956 (99%) EPI760191 A/swine/Iowa/A01733867/2016 (A/H3N2) segment 4 (HA) 1735.1 0.000000e+00 950/956 (99%) EPI760173 A/swine/Iowa/A01733965/2016 (A/H3N2) segment 4 (HA) 1735.1 0.000000e+00 950/956 (99%) EPI559560 A/swine/Iowa/A01476500/2013 (A/H3N1) segment 4 (HA) 1735.1 0.000000e+00 950/956 (99%) EPI534887 A/swine/USA/2013028053/2013 (A/H3N1) segment 4 (HA) 1735.1 0.000000e+00 950/956 (99%) EPI813571 A/swine/Iowa/A01775848/2016 (A/H3N2) segment 4 (HA) 1729.6 0.000000e+00 949/956 (99%) EPI806649 A/swine/Iowa/A01776136/2016 (A/H3N2) segment 4 (HA) 1729.6 0.000000e+00 949/956 (99%) EPI678554 A/swine/Iowa/A01944136/2015 (A/H3N2) segment 4 (HA) 1729.6 0.000000e+00 949/956 (99%) EPI559545 A/swine/Missouri/A01476458/2013 (A/H3N1) segment 4 (HA) 1729.6 0.000000e+00 949/956 (99%) EPI778307 A/swine/Missouri/A01943095/2016 (A/H3N1) segment 4 (HA) 1718.5 0.000000e+00 947/956 (99%) EPI600443 A/swine/Iowa/A01476969/2014 (A/H0) segment 4 (HA) 1718.5 0.000000e+00 947/956 (99%) EPI559572 A/swine/Iowa/A01476501/2014 (A/H3N1) segment 4 (HA) 1718.5 0.000000e+00 947/956 (99%) EPI559509 A/swine/Iowa/A01476471/2014 (A/H3N1) segment 4 (HA) 1718.5 0.000000e+00 947/956 (99%) EPI559503 A/swine/Iowa/A01476697/2014 (A/H3N1) segment 4 (HA) 1718.5 0.000000e+00 947/956 (99%) EPI534890 A/swine/USA/2014001372/2014 (A/H3N1) segment 4 (HA) 1714.8 0.000000e+00 946/956 (98%) EPI600303 A/swine/Iowa/A01566613/2014 (A/H3N2) segment 4 (HA) 1713.0 0.000000e+00 946/956 (98%) EPI600401 A/swine/Iowa/A01476914/2014 (A/H3N2) segment 4 (HA) 1707.4 0.000000e+00 945/956 (98%) EPI687605 A/swine/Iowa/A01941182/2015 (A/H3N2) segment 4 (HA) 1696.3 0.000000e+00 943/956 (98%) EPI669266 A/swine/Minnesota/A01940176/2015 (A/H3N2) segment 4 (HA) 1696.3 0.000000e+00 943/956 (98%) EPI612729 A/swine/Minnesota/A01847237/2015 (A/H3N2) segment 4 (HA) 1696.3 0.000000e+00 943/956 (98%) EPI559518 A/swine/Iowa/A01476696/2014 (A/H3N1) segment 4 (HA) 1696.3 0.000000e+00 943/956 (98%) EPI778292 A/swine/Iowa/A01943075/2016 (A/H3N2) segment 4 (HA) 1690.8 0.000000e+00 942/956 (98%) EPI704873 A/swine/Iowa/A01941549/2015 (A/H3N2) segment 4 (HA) 1690.8 0.000000e+00 942/956 (98%) EPI778427 A/swine/Minnesota/A01943266/2016 (A/H3N2) segment 4 (HA) 1685.3 0.000000e+00 942/957 (98%) EPI711700 A/swine/Minnesota/A01941831/2015 (A/H3N2) segment 4 (HA) 1685.3 0.000000e+00 941/956 (98%) EPI711697 A/swine/Minnesota/A01941676/2015 (A/H3N2) segment 4 (HA) 1685.3 0.000000e+00 941/956 (98%) EPI778430 A/swine/Minnesota/A01943420/2016 (A/H3N2) segment 4 (HA) 1679.7 0.000000e+00 941/957 (98%) EPI736681 A/swine/Minnesota/A01942171/2016 (A/H3N2) segment 4 (HA) 1679.7 0.000000e+00 940/956 (98%) EPI711709 A/swine/Minnesota/A01941693/2015 (A/H3N2) segment 4 (HA) 1679.7 0.000000e+00 940/956 (98%) EPI573048 A/swine/Iowa/A01555108/2014 (A/H3N1) segment 4 (HA) 1679.7 0.000000e+00 940/956 (98%) EPI711737 A/swine/Iowa/A01728956/2016 (A/H3N2) segment 4 (HA) 1676.0 0.000000e+00 939/956 (98%) EPI703852 A/swine/Iowa/A01896071/2015 (A/H0) segment 4 (HA) 1674.2 0.000000e+00 939/956 (98%) EPI559590 A/swine/Missouri/A01476459/2012 (A/H3N2) segment 4 (HA) 1646.5 0.000000e+00 935/957 (97%) EPI607141 A/Peru/8410/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI497462 A/Peru/PER373/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI427103 A/Ohio/01/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI427056 A/Texas/04/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI316173 A/Peru/8410/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI316040 A/District of Columbia/03/2011 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI309412 A/California/03/2011 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI302243 A/South Dakota/02/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI301766 A/South Dakota/02/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI279958 A/Ohio/01/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI278763 A/Texas/04/2010 (A/H3N2) segment 4 (HA) 1635.4 0.000000e+00 933/957 (97%) EPI316236 A/Washington/06/2011 (A/H3N2) segment 4 (HA) 1631.7 0.000000e+00 932/957 (97%) EPI316181 A/Rhode Island/04/2011 (A/H3N2) segment 4 (HA) 1631.7 0.000000e+00 932/957 (97%) EPI316028 A/Delaware/03/2011 (A/H3N2) segment 4 (HA) 1631.7 0.000000e+00 932/957 (97%) EPI609291 A/Texas/12/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI608633 A/Brandenburg/1/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI608484 A/Iowa/12/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI606680 A/Kentucky/12/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI606432 A/Washington/02/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI606273 A/Maryland/07/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI606160 A/Argentina/28370/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI512161 A/Tennessee/F2008c07/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI511992 A/Tennessee/F2011/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI511939 A/Tennessee/F2019A/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI511932 A/Tennessee/F2019/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI511925 A/Tennessee/F2018A/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI511918 A/Tennessee/F2018/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI511802 A/Tennessee/F2059/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI497196 A/Peru/PER335/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI497022 A/Peru/PER312/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI496869 A/Peru/PER291/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI496831 A/Peru/PER285/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI496771 A/Peru/PER279/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI496382 A/Peru/PER220/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI496270 A/Peru/PER204/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI495489 A/Peru/PER183/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI495405 A/Peru/PER171/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI495328 A/Peru/PER160/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI495223 A/Peru/PER145/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI495076 A/Peru/PER123/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI494719 A/Peru/PER071/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI494327 A/Peru/PER015/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI484635 A/Stockholm/42/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI438335 A/Pennsylvania/03/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI427107 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI426917 A/Florida/11/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI408585 A/Mississippi/05/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI408580 A/Mississippi/05/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI390978 A/swine/Illinois/A01201763/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI367718 A/Alberta/004/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI367716 A/Alberta/002/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI367715 A/Alberta/001/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI366356 A/Mississippi/05/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI361046 A/Boston/DOA15/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI360996 A/Quebec/014/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI360977 A/British Columbia/007/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI359476 A/Boston/DOA75/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI359268 A/British Columbia/003/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI359267 A/British Columbia/002/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI359013 A/Stockholm/42/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342333 A/Chile/72/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342330 A/Chile/72/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342303 A/North Dakota/06/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342300 A/North Dakota/06/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342297 A/North Dakota/06/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342279 A/Guadeloupe/201/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342277 A/Guadeloupe/201/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342275 A/Guadeloupe/201/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342205 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342203 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342197 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI342195 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI335948 A/Santiago/18454/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI335923 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI335861 A/Argentina/676/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI334570 A/Mexico City/WRAIR3569N/2010(H3N2) (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI331259 A/Washington/12/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI326324 A/Quebec/RV1238/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI326281 A/Chile/9920/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI326278 A/Chile/72/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325985 A/Mexico City/WRAIR4139N/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325977 A/Mexico City/WRAIR3580T/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325969 A/Mexico City/WRAIR3579T/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325961 A/Mexico City/WRAIR3579N/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325953 A/Mexico City/WRAIR3578T/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325945 A/Mexico City/WRAIR3578N/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325937 A/Mexico City/WRAIR3577T/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325929 A/Mexico City/WRAIR3571N/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325905 A/Mexico City/WRAIR3569T/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325889 A/Mexico City/WRAIR3568N/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI325881 A/Mexico City/WRAIR3568N/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI320636 A/Managua/3424.01/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI320357 A/California/NHRC0004/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI320349 A/California/NHRC0003/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI320341 A/California/NHRC0002/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI319740 A/Minnesota/09/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI319656 A/California/22/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI319136 A/California/NHRC0001/2011 (A/H0) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI319128 A/Illinois/NHRC0002/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI316209 A/Vermont/03/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI316114 A/Mississippi/03/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI316105 A/Minnesota/06/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI316013 A/Alabama/01/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI313160 A/Denmark/21/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309616 A/Texas/05/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309529 A/California/05/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309493 A/Maryland/07/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309464 A/Wyoming/04/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309455 A/Colorado/01/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309438 A/Guadeloupe/129/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309431 A/Texas/26/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309405 A/Costa Rica/0096/2001 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI308982 A/Texas/AF2730/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI308974 A/Nevada/AF2714/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI308964 A/Colorado/AF2701/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI308962 A/Arizona/AF2698/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI308954 A/Ohio/AF2718/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI302319 A/Iowa/12/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI302304 A/Iowa/11/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI302268 A/British Columbia/RV29/2011 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301772 A/Washington/02/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301759 A/Oklahoma/02/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301753 A/North Carolina/13/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301737 A/Arkansas/03/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301358 A/Brandenburg/1/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301350 A/Argentina/28370/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301125 A/Nebraska/03/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301121 A/Arkansas/05/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301111 A/California/27/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301101 A/Texas/12/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301047 A/Georgia/19/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301021 A/Kentucky/12/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301018 A/Florida/27/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI301010 A/Alabama/07/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI295227 A/Mexico/4674/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI295199 A/Belize/3715/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI295193 A/Texas/07/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI295071 A/Mississippi/05/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI291556 A/Costa Rica/6696/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI287082 A/Panama/307149/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI279988 A/Mexico/4056/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI279979 A/Barbados/170/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI279967 A/Pennsylvania/08/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI279961 A/Florida/11/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI278766 A/Dominican Republic/4319/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI278760 A/Panama/307149/2010 (A/H3N2) segment 4 (HA) 1629.9 0.000000e+00 932/957 (97%) EPI309557 A/Vermont/03/2011 (A/H3N2) segment 4 (HA) 1628.0 0.000000e+00 931/957 (97%) EPI645577 A/swine/Guatemala/CIP049-IP040078/2010 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI606529 A/Florida/43/2010 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI326311 A/Nevada/06/2011 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI319733 A/Minnesota/05/2011 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI316082 A/Kansas/03/2011 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI309535 A/New Mexico/01/2011 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI309387 A/Mexico/6605/2010 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI302327 A/Iowa/19/2010 (A/H3N2) segment 4 (HA) 1626.2 0.000000e+00 931/957 (97%) EPI609616 A/Argentina/28306/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI609592 A/Hong Kong/2152/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI608973 A/Colorado/05/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI608241 A/Argentina/27894/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI608173 A/England/3940462/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI607377 A/Argentina/28379/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI607199 A/Argentina/27895/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI607194 A/Hessen/4/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606892 A/Argentina/28378/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606738 A/Texas/23/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606619 A/Rheinland Pfalz/7/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606570 A/Hong Kong/3171/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606460 A/Argentina/27893/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606404 A/Argentina/8409/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI606275 A/Colombia/6722/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI605920 A/Argentina/27891/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%) EPI576281 A/Rheinland-Pfalz/7/2010 (A/H3N2) segment 4 (HA) 1624.3 0.000000e+00 931/957 (97%)

Isolate name: A/Michigan/82/2016 Isolate ID: EPI_ISL_232046 Passage details/history: OR Type: A / H3N2 Lineage: Sample information Collection date: 2016-08-09 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: United States / Michigan Additional location information: Patient age: Gender: Outbreak: Treatment: Specimen source: Institute information Originating lab: Michigan Department of Community Health Sample ID given by the sample provider: CL16-430433 ORIGINAL Address: Michigan Department of Community Health Viral Isolation and Molecular Testing 3350 N. Martin Luther King, Jr. Blvd Lansing, 48909 United States Submitting lab: Centers for Disease Control and Prevention Sample ID given by the submitting laboratory: 3000480509 Authors: Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 3000480509_1 2264 EPI824762 PB1 3000480509_2 2274 EPI824763 PA 3000480509_3 1094 EPI824761 HA 3000480509_4 956 EPI824765 NA 3000480509_6 1360 EPI824764 MP 3000480509_7 970 EPI824760 NS 3000480509_8 664 EPI824759 Submitter information Submitter: Jang, Yunho Submission Date: 2016-08-19 Last modifier: Jang, Yunho Last modified: 2016-08-19 Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States

Discussion of new Palm Beach County case and delayed testing by Florida DoH

Reported Cases of Zika in New York City as of 8/19/2016 [Español (PDF)] Positive NYC Residents Case Type Number of Cases Locally acquired mosquito-borne reported† 0 Travel-associated* 473 Sexually transmitted: 5 Guillain-Barre syndrome: 3 Infants with birth defects: 1 Laboratory acquired 0 Pending Verification of Travel 32 Total 505 Gender Number of Cases Female 357 Pregnant: 51 Male 148 Age Average Age (Range) 39 (1-78) Positive NYC Resident by Borough Number of Cases Bronx 181 Brooklyn 118 Manhattan 109 Queens 93 Staten Island 4 Unknown 0 Most Common Countries Visited Number of Cases Dominican Republic 269 Jamaica 43 Puerto Rico 42 Guyana 17 Trinidad and Tobago 15 Saint Lucia 11 Colombia 10 Saint Vincent and the Grenadines 10 Grenada 8 Barbados 7 Mexico 7 †Presumed local mosquito-borne transmission *Travelers returning from affected areas, their sexual contacts, or infants infected in utero

The CDC has reported H3N2v cases in Michigan and Ohio. In the week 31 Fluview 2 cases in each state were reported. followed by 7 more in week 32 (6 MI & 1 OH). Four sets of full or partial sequences were released at GISAID ( A/Ohio/27/2016, A/Ohio/28/2016, A/Michigan/82/2016, A/Michigan/83/2016 ). The sequences contain a novel constellation with an H3 most closely related to 2010 seasonal H3N2 and an MP related to H1N1pdm09. Other genes were most closely related to earlier human H3N2v sequences from 2012. However, only H3 and N2 were released from a fifth isolate, A/Michigan/84/2016, which matched recent human isolates.

TABLE I. Provisional cases of selected* infrequently reported notifiable diseases (<1,000 cases reported during the preceding year), United States, week ending August 20, 2016 (WEEK 33)† http://wonder.cdc.gov/mmwr/mmwr_2016.asp?mmwr_year=2016&mmwr_week=33&mmwr_table=1&request=Submit&mmwr_location= Disease Total cases reported for previous years Current week Cum 2016 5-year weekly average§ 2015 2014 2013 2012 2011 States reporting cases during current week (No.33) Anthrax - - - - - - - 1 Arboviral diseases ¶,**: Chikungunya virus †† - 64 7 896 NN NN NN NN Eastern equine encephalitis virus - 1 1 6 8 8 15 4 Jamestown Canyon virus §§ - 2 0 11 11 22 2 3 La Crosse virus §§ - 5 2 55 80 85 78 130 Powassan virus - 2 0 7 8 12 7 16 St. Louis encephalitis virus - 1 0 23 10 1 3 6 Western equine encephalitis virus - - - - - - - - Botulism, total - 109 3 195 161 152 168 153 foodborne - 25 1 37 15 4 27 24 infant - 72 2 138 127 136 123 97 other(wound & unspecified) - 12 0 20 19 12 18 32 Brucellosis 1 71 3 126 92 99 114 79 TX (1 ) Chancroid - 8 0 11 - - 15 8 Cholera - - 0 2 5 14 17 40 Cyclosporiasis ** 10 282 24 645 388 784 123 151 NY (1 ), NYC (3 ), OH (2 ), MI (1 ), NE (1 ), FL (1 ), TX (1 ) Diphtheria - - - - 1 - 1 - Haemophilus influenzae, invasive disease (age <5 yrs) ¶¶: serotype b - 11 1 29 40 31 30 14 nontypeable serotype - 92 2 175 128 141 115 93 other serotype 1 76 1 135 266 233 263 230 TX (1 ) unknown serotype - 131 3 167 39 34 37 48 Hansen's disease ** - 26 2 89 88 81 82 82 Hantavirus Infections **: Hantavirus infection (non-HPS) †† - 2 0 1 NN NN NN NN Hantavirus pulmonary syndrome (HPS) - 10 0 17 32 21 30 23 Hemolytic uremic syndrome, post-diarrheal ** 2 120 9 274 250 329 274 290 NYC (1 ), ID (1 ) Hepatitis B, virus infection perinatal 1 17 1 37 47 48 40 NP PA (1 ) Influenza-associated pediatric mortality **, *** - 79 1 130 141 160 52 118 Leptospirosis ** - 18 1 40 38 NN NN NN Listeriosis 3 331 23 766 769 735 727 870 NY (1 ), NYC (1 ), VA (1 ) Measles ††† - 49 3 188 667 187 55 220 Meningococcal disease, invasive §§§: serogroup ACWY - 57 2 120 123 142 161 257 serogroup B 1 47 1 111 89 99 110 159 NE (1 ) other serogroup - 11 0 21 25 17 20 20 unknown serogroup 1 121 3 120 196 298 260 323 NYC (1 ) Novel influenza A virus infections ¶¶¶ 7 14 12 6 3 21 313 14 MI (6 ), OH (1 ) Plague - - 0 13 10 4 4 3 Poliomyelitis, paralytic - - - - - 1 - - Polio virus infection, nonparalytic ** - - - - - - - - Psittacosis ** - 4 0 4 8 6 2 2 Q fever total **: 1 69 4 156 168 170 135 134 acute 1 58 3 122 132 137 113 110 WA (1 ) chronic - 11 1 34 36 33 22 24 Rabies, human - - 0 1 1 2 1 6 SARS CoV - - - - - - - - Smallpox - - - - - - - - Streptococcal toxic shock syndrome ** 2 167 2 335 259 224 194 168 ME (1 ), VA (1 ) Syphilis, congenital **** - 202 8 489 458 348 322 360 Toxic shock syndrome (staphylococcal) ** - 19 2 64 59 71 65 78 Trichinellosis ** - 7 0 11 14 22 18 15 Tularemia - 107 7 314 180 203 149 166 Typhoid fever 2 179 9 367 349 338 354 390 NYC (1 ), VA (1 ) Vancomycin-intermediate Staphylococcus aureus ** - 63 3 183 212 248 134 82 Vancomycin-resistant Staphylococcus aureus ** - - 0 1 - - 2 - Viral hemorrhagic Fevers ††††: Crimean-Congo hemorrhagic fever - - - - NP NP NP NP Ebola hemorrhagic fever - - - - 4 NP NP NP Guanarito hemorrhagic fever - - - - NP NP NP NP Junin hemorrhagic fever - - - - NP NP NP NP Lassa fever - - - - 1 NP NP NP Lujo virus - - - - NP NP NP NP Machupo hemorrhagic fever - - - - NP NP NP NP Marburg fever - - - - NP NP NP NP Sabia-associated hemorrhagic fever - - - - NP NP NP NP Yellow fever - - - - - - - - Zika ††,§§§§ Zika virus congenital infection NA NA NA NN NN NN NN NN Zika virus disease, non-congenital infection 6 2,418 - NN NN NN NN NN NYC (2 ), MI (1 ), MD (2 ), KY (1 ) [ Export This Table ] [ Next Part ] [ NNDSS Interactive Tables ] [ Mortality Interactive Tables ] -: No reported cases N: Not reportable. NA: Not Available NN: Not Nationally Notifiable. NP: Nationally notifiable but not published. Cum: Cumulative year-to-date counts. * Case counts for reporting years 2015 and 2016 are provisional and subject to change. Data for years 2011 through 2014 are finalized. For further information on interpretation of these data, see http://wwwn.cdc.gov/nndss/document/ProvisionalNationaNotifiableDiseasesSurveillanceData20100927.pdf. † This table does not include cases from the U.S. territories. Three low incidence conditions, rubella, rubella congenital, and tetanus, are in Table II to facilitate case count verification with reporting jurisdictions. § Calculated by summing the incidence counts for the current week, the 2 weeks preceding the current week, and the 2 weeks following the current week, for a total of 5 preceding years. Additional information is available at http://wwwn.cdc.gov/nndss/document/5yearweeklyaverage.pdf. ¶ Includes both neuroinvasive and nonneuroinvasive. Updated weekly reports from the Division of Vector-Borne Diseases, National Center for Emerging and Zoonotic Infectious Diseases (ArboNET Surveillance). Data for West Nile virus are available in Table II. ** Not reportable in all reporting jurisdictions. Data from states where the condition is not reportable are excluded from this table, except for the arboviral diseases and influenza-associated pediatric mortality. Reporting exceptions are available at http://wwwn.cdc.gov/nndss/downloads.html. †† Office of Management and Budget approval of the NNDSS Revision #0920-0728 on January 21, 2016, authorized CDC to receive data for these conditions. CDC is in the process of soliciting data for these conditions (except Zika virus, congenital infection). CDC and the U.S. states are still modifying the technical infrastructure needed to collect and transmit data for Zika virus congenital infections. §§ Jamestown Canyon virus and Lacrosse virus have replaced California serogroup diseases. ¶¶ Data for Haemophilus influenzae (all ages, all serotypes) are available in Table II. *** Please refer to the MMWR publication for weekly updates to the footnote for this condition. ††† Please refer to the MMWR publication for weekly updates to the footnote for this condition. §§§ Data for meningococcal disease (all serogroups) are available in Table II. ¶¶¶ Please refer to the MMWR publication for weekly updates to the footnote for this condition. **** Updated weekly from reports to the Division of STD Prevention, National Center for HIV/AIDS, Viral Hepatitis, STD, and TB Prevention. †††† Please refer to the MMWR publication for weekly updates to the footnote for this condition. §§§§ All cases reported have occurred in travelers returning from affected areas, with their sexual contacts, or infants infected in utero. National Notifiable Diseases Surveillance System (NNDSS) MMWR web application provided by CDC WONDER, http://wonder.cdc.gov

Zika ††,§§§§ Zika virus congenital infection NA NA NA NN NN NN NN NN Zika virus disease, non-congenital infection 6 2,418 - NN NN NN NN NN NYC (2 ), MI (1 ), MD (2 ), KY (1 )

Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

August 24, 2016 http://www.floridahealth.gov/newsroom/2016/08/082416-zika-update.html Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla. — In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a CDC-confirmed Zika case count by county and information to keep Floridians informed and prepared. There are 15 new travel related cases today, including three in Orange, three in Pinellas, three in Polk, two in Broward, one in Hillsborough, one in Manatee, one in Pasco and one in Volusia. Please visit our website to see the full list of travel-related cases. There is one new non-travel related case today in Palm Beach County. This case is not connected to the investigation into an individual in Palm Beach County that was announced earlier this month. DOH has begun door-to-door outreach and targeted testing in Palm Beach County and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH still believes ongoing transmission is only taking place within the small identified areas in Wynwood and Miami Beach in Miami-Dade County, see maps below. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. For a complete breakdown of non-travel and travel-related Zika infections to-date, please see below. Infection Type Infection Count Travel-Related Infections of Zika 523 Non-Travel Related Infections of Zika 43 Infections Involving Pregnant Women 70 The department is currently conducting 10 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 3,938 people statewide. Florida currently has the capacity to test 6,489 people for active Zika virus and 3,595 for Zika antibodies. At Governor Scott’s direction, all county health departments now offer free Zika risk assessment and testing to pregnant women. CDC recommends that women who are pregnant or thinking of becoming pregnant postpone travel to areas with widespread Zika infection. Florida’s small case cluster is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted area in Miami-Dade County (see map below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 70. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 4,635 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. STATE OF FLORIDA MIAMI-DADE COUNTY About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health please visit www.FloridaHealth.gov.