niman

USA/NJ-GBW-H10-017-1380/2023 Essex Newark International Airport 10/12/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP6 R252K drop C11747T (NSP6) drop C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.715750649471%2C-74.41221777083528&z=11

USA/NJ-GBW-H10-017-1380/2023 Essex Newark International Airport 10/12/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP6 R252K drop C11747T (NSP6) drop C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=38.59944674951559%2C-77.66216429083534&z=9

USA/VA-CDC-LC1065445/2023 Virginia 45F 10/9/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S JN.1 C9142T (NSP4)

isolate SARS-CoV-2/Human/USA/VA-CDC-LC1065445/2023 collected by Laboratory Corporation of America collection date 2023-10-09 isolation source Nasal Swabs geographic location USA: Virginia host Homo sapiens host disease COVID-19 host sex female host age 45 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.994 lineage/clade name BA.2.86 https://www.ncbi.nlm.nih.gov/biosample/SAMN37934951

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.742136778670655%2C-74.47854772577126&z=11

USA/NJ-GBW-H10-016-6943/2023 Essex Newark International Airport 10/16/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K drop C11747T (NSP6) drop C18894T (NSP14) Spike L455S NS7b F19L JN.1 C9142T (NSP4)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=37.227376850122994%2C-79.98974753146526&z=11

USA/VA-VTVAS3-GSC44091/2023 Virginia 10/23/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP1 T170I

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.59649216370432%2C-73.72996787537512&z=10

Canada/QC-L00672067001/2023 Quebec 10/30/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP1 T170I

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.67331022203712%2C-73.94145469178137&z=10

Canada/QC-L00669660001/2023 Quebec 10/23/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.60749779008712%2C-74.41935996521887&z=10

Canada/QC-L00670050001/2023 Quebec 10/23/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=52.076496678412056%2C8.72524546960129&z=12

Germany/NW-RKI-I-1138955/2023 North Rhine-Westphalia 10/22/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=35.638713550763306%2C139.61863188252164&z=10

Japan/TKYnat15763/2023 Tokyo 10/17/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 C9142T (NSP4)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.422095699759815%2C-75.67594146927681&z=12

Canada/ON-KHS-07570-v1/2023 Ottawa 10/27/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=54.34436164179098%2C10.131871044573453&z=13

Germany/SH-ChVir44042/2023 Schleswig-Holstein 9/21/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=49.42092730219703%2C2.1102579183997516&z=13