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SARS-CoV2 BA.2.86 Derivative Sequences Map

Vaccine Resistant 2015 H5N1 Sequence In Zagazig Egypt

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niman Grand Master

niman

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Isolate name:
 
A/chicken/F611/Egypt/2015(H5N1) 
 
 
Isolate ID:
 
EPI_ISL_192547 
 
 
Passage details/history:
 
c1 
 
 
Type:
 
A / H5N1 
 
 
Lineage:
 
 
Sample information

 

Collection date:
 
2015-01-07 
 
 
Host
 
Gallus gallus 
 
 
Additional host information:
 
 
 
 
Domestic status:
 
Domestic 
 
 
Is vaccinated:
 
Y 
 
 
Location:
 
Egypt / Sharqia 
 
 
Additional location information:
 
Zagazig 
 
 
Health status:
 
Dead 
 
 
Specimen source:
 
Tracheal swab 
 
 
Strain or commercial product name used for vaccination:
 
H5N2 vaccine (VOLVAC) 
 
 
Institute information

 

Originating lab:
 
National Laboratory for Veterinary Quality Control on Poultry production- Animal Health Research Inistitute
 
Sample ID given by the sample provider:
 
F611 
 
 
Address:
 
National Laboratory for Veterinary Quality Control on Poultry production- Animal Health Research Inistitute
 Nadi-Elsaid  
12618 Dokki
Egypt
 
Submitting lab:
 
Faculty of Veterinary - Zagazig University
 
Sample ID given by the submitting laboratory:
 
F611 
 
 
Authors:
 
 
 
Address:
 
Faculty of Veterinary - Zagazig University
Avian and Rabbit Diseases
 El-Shohada, Qesm Awal AZ  
 Zagazig
Egypt
 
Publication
Publication
 
In vivo antiviral resistance

 

Antiviral resistance tested by experimental procedures
 
Adamantanes:
 
Unknown 
 
 
Oseltamivir:
 
Unknown 
 
 
Zanamivir:
 
Unknown 
 
 
Peramivir:
 
Unknown 
 
 
Other:
 
Unknown 
 
Sequence

 

segmentidentifierlengthaccession #INSDCSequence
 
HA
 
A/chicken/F611/Egypt/2015(H5N1)
 
1642
 
EPI628911
 
 
 
text_view.png
 
Submitter information

 

Submitter:
 
El-Didamoney, Reham Mohamed 
 
 
Submission Date:
 
2015-08-07 
 
 
Last modifier:
 
El-Didamoney, Reham Mohamed 
 
 
Last modified:
 
2015-08-07 
 
 
Address:
 
Faculty of Veterinary - Zagazig University
Avian and Rabbit Diseases
 El-Shohada, Qesm Awal AZ  
 Zagazig
Egypt
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niman Grand Master

niman

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AlignSegment-IDNameScoreE-ValueIdentity
text_code_colored.pngEPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)3029.60.000000e+001642/1642 (100%)
text_code_colored.pngEPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)2990.80.000000e+001634/1642 (99%)
text_code_colored.pngEPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)2990.80.000000e+001634/1642 (99%)
text_code_colored.pngEPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)2985.30.000000e+001631/1639 (99%)
text_code_colored.pngEPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)2985.30.000000e+001633/1642 (99%)
text_code_colored.pngEPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)2985.30.000000e+001633/1642 (99%)
text_code_colored.pngEPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)2985.30.000000e+001633/1642 (99%)
text_code_colored.pngEPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1642 (99%)
text_code_colored.pngEPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001631/1640 (99%)
text_code_colored.pngEPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)2979.80.000000e+001632/1642 (99%)
text_code_colored.pngEPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)2979.80.000000e+001632/1642 (99%)
text_code_colored.pngEPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)2979.80.000000e+001632/1642 (99%)
text_code_colored.pngEPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)2979.80.000000e+001632/1642 (99%)
text_code_colored.pngEPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)2979.80.000000e+001632/1642 (99%)
text_code_colored.pngEPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)2979.80.000000e+001632/1642 (99%)
text_code_colored.pngEPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)
text_code_colored.pngEPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)
text_code_colored.pngEPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)
text_code_colored.pngEPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)
text_code_colored.pngEPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)
text_code_colored.pngEPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)
text_code_colored.pngEPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)2972.40.000000e+001630/1641 (99%)
text_code_colored.pngEPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)2968.70.000000e+001622/1630 (99%)
text_code_colored.pngEPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)2968.70.000000e+001630/1642 (99%)
text_code_colored.pngEPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)2963.10.000000e+001628/1641 (99%)
text_code_colored.pngEPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2957.60.000000e+001616/1624 (99%)
text_code_colored.pngEPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2957.60.000000e+001616/1624 (99%)
text_code_colored.pngEPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2957.60.000000e+001616/1624 (99%)
text_code_colored.pngEPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)2957.60.000000e+001628/1642 (99%)
text_code_colored.pngEPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)2957.60.000000e+001628/1642 (99%)
text_code_colored.pngEPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)2955.80.000000e+001625/1638 (99%)
text_code_colored.pngEPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2952.10.000000e+001615/1624 (99%)
text_code_colored.pngEPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2952.10.000000e+001615/1624 (99%)
text_code_colored.pngEPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2952.10.000000e+001615/1624 (99%)
text_code_colored.pngEPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2946.50.000000e+001614/1624 (99%)
text_code_colored.pngEPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2946.50.000000e+001614/1624 (99%)
text_code_colored.pngEPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2946.50.000000e+001614/1624 (99%)
text_code_colored.pngEPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)2946.50.000000e+001626/1642 (99%)
text_code_colored.pngEPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2941.00.000000e+001613/1624 (99%)
text_code_colored.pngEPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2935.40.000000e+001616/1629 (99%)
text_code_colored.pngEPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)2935.40.000000e+001624/1642 (98%)
text_code_colored.pngEPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)2924.40.000000e+001622/1642 (98%)
text_code_colored.pngEPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)2918.80.000000e+001622/1643 (98%)
text_code_colored.pngEPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2913.30.000000e+001608/1624 (99%)
text_code_colored.pngEPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)2913.30.000000e+001620/1642 (98%)
text_code_colored.pngEPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)2913.30.000000e+001620/1642 (98%)
text_code_colored.pngEPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)2913.30.000000e+001620/1642 (98%)
text_code_colored.pngEPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)2907.70.000000e+001619/1642 (98%)
text_code_colored.pngEPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)2904.10.000000e+001618/1642 (98%)
text_code_colored.pngEPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2902.20.000000e+001595/1607 (99%)
text_code_colored.pngEPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2902.20.000000e+001594/1606 (99%)
text_code_colored.pngEPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)2902.20.000000e+001618/1642 (98%)
text_code_colored.pngEPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)2902.20.000000e+001618/1642 (98%)
text_code_colored.pngEPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)2898.50.000000e+001617/1642 (98%)
text_code_colored.pngEPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2896.70.000000e+001585/1594 (99%)
text_code_colored.pngEPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)2896.70.000000e+001618/1643 (98%)
text_code_colored.pngEPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2896.70.000000e+001593/1606 (99%)
text_code_colored.pngEPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)2896.70.000000e+001618/1643 (98%)
text_code_colored.pngEPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)2896.70.000000e+001617/1642 (98%)
text_code_colored.pngEPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)2891.10.000000e+001616/1642 (98%)
text_code_colored.pngEPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)2891.10.000000e+001616/1642 (98%)
text_code_colored.pngEPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2891.10.000000e+001616/1642 (98%)
text_code_colored.pngEPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)2891.10.000000e+001616/1642 (98%)
text_code_colored.pngEPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)2891.10.000000e+001617/1643 (98%)
text_code_colored.pngEPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)2891.10.000000e+001617/1643 (98%)
text_code_colored.pngEPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)2891.10.000000e+001617/1643 (98%)
text_code_colored.pngEPI573316A/duck/Egypt/1427SL/2014 (A/H5N1) segment 4 (HA)2887.40.000000e+001590/1604 (99%)
text_code_colored.pngEPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)2885.60.000000e+001616/1643 (98%)
text_code_colored.pngEPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)2885.60.000000e+001615/1642 (98%)
text_code_colored.pngEPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2883.70.000000e+001606/1629 (98%)
text_code_colored.pngEPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2883.70.000000e+001606/1629 (98%)
text_code_colored.pngEPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2880.00.000000e+001615/1643 (98%)
text_code_colored.pngEPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2880.00.000000e+001615/1643 (98%)
text_code_colored.pngEPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2880.00.000000e+001614/1642 (98%)
text_code_colored.pngEPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2878.20.000000e+001613/1642 (98%)
text_code_colored.pngEPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2876.40.000000e+001613/1642 (98%)
text_code_colored.pngEPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2876.40.000000e+001613/1642 (98%)
text_code_colored.pngEPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2874.50.000000e+001614/1643 (98%)
text_code_colored.pngEPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2874.50.000000e+001613/1642 (98%)
text_code_colored.pngEPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2874.50.000000e+001613/1642 (98%)
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