Vaccine Resistant 2015 H5N1 Sequence In Zagazig Egypt

niman · August 10, 2015

NLCQCP releases H5 sequence from 2015 vaccine resistant fatal infection.

niman · August 10, 2015

Isolate name:

A/chicken/F611/Egypt/2015(H5N1)

Isolate ID:

EPI_ISL_192547

Passage details/history:

c1

Type:

A / H5N1

Lineage:

Sample information

Collection date:

2015-01-07

Host	Gallus gallus

Additional host information:

Domestic status:

Domestic

Is vaccinated:

Y

Location:

Egypt / Sharqia

Additional location information:

Zagazig

Health status:

Dead

Specimen source:

Tracheal swab

Strain or commercial product name used for vaccination:

H5N2 vaccine (VOLVAC)

Institute information

Originating lab:

National Laboratory for Veterinary Quality Control on Poultry production- Animal Health Research Inistitute

Sample ID given by the sample provider:

F611

Address:

National Laboratory for Veterinary Quality Control on Poultry production- Animal Health Research Inistitute
 Nadi-Elsaid  
12618 Dokki
Egypt

Submitting lab:

Faculty of Veterinary - Zagazig University

Sample ID given by the submitting laboratory:

F611

Authors:

Address:

Faculty of Veterinary - Zagazig University
Avian and Rabbit Diseases
 El-Shohada, Qesm Awal AZ  
 Zagazig
Egypt

Publication

In vivo antiviral resistance

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown

Sequence

	segment	identifier	length	accession #	INSDC	Sequence
	HA	A/chicken/F611/Egypt/2015(H5N1)	1642	EPI628911

Submitter information

Submitter:

El-Didamoney, Reham Mohamed

Submission Date:

2015-08-07

Last modifier:

El-Didamoney, Reham Mohamed

Last modified:

2015-08-07

Address:

Faculty of Veterinary - Zagazig University
Avian and Rabbit Diseases
 El-Shohada, Qesm Awal AZ  
 Zagazig
Egypt

niman · August 10, 2015

Segment-ID	Name	Score	E-Value	Identity
EPI628911	A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)	3029.6	0.000000e+00	1642/1642 (100%)
EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	2990.8	0.000000e+00	1634/1642 (99%)
EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	2990.8	0.000000e+00	1634/1642 (99%)
EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1631/1639 (99%)
EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1633/1642 (99%)
EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1633/1642 (99%)
EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1633/1642 (99%)
EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1632/1642 (99%)
EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1631/1640 (99%)
EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1630/1641 (99%)
EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	2968.7	0.000000e+00	1622/1630 (99%)
EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	2968.7	0.000000e+00	1630/1642 (99%)
EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1628/1641 (99%)
EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1616/1624 (99%)
EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1616/1624 (99%)
EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1616/1624 (99%)
EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1628/1642 (99%)
EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1628/1642 (99%)
EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	2955.8	0.000000e+00	1625/1638 (99%)
EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1615/1624 (99%)
EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1615/1624 (99%)
EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1615/1624 (99%)
EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1626/1642 (99%)
EPI608787	A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)	2941.0	0.000000e+00	1613/1624 (99%)
EPI574389	A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)	2935.4	0.000000e+00	1616/1629 (99%)
EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	2935.4	0.000000e+00	1624/1642 (98%)
EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	2924.4	0.000000e+00	1622/1642 (98%)
EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	2918.8	0.000000e+00	1622/1643 (98%)
EPI608785	A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1608/1624 (99%)
EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1620/1642 (98%)
EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1620/1642 (98%)
EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1620/1642 (98%)
EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2907.7	0.000000e+00	1619/1642 (98%)
EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	2904.1	0.000000e+00	1618/1642 (98%)
EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1595/1607 (99%)
EPI573314	A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1594/1606 (99%)
EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1618/1642 (98%)
EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1618/1642 (98%)
EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2898.5	0.000000e+00	1617/1642 (98%)
EPI603915	A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1585/1594 (99%)
EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1618/1643 (98%)
EPI573317	A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1593/1606 (99%)
EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1618/1643 (98%)
EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1617/1642 (98%)
EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
EPI538767	A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1617/1643 (98%)
EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1617/1643 (98%)
EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1617/1643 (98%)
EPI573316	A/duck/Egypt/1427SL/2014 (A/H5N1) segment 4 (HA)	2887.4	0.000000e+00	1590/1604 (99%)
EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1616/1643 (98%)
EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
EPI538807	A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)	2883.7	0.000000e+00	1606/1629 (98%)
EPI538791	A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)	2883.7	0.000000e+00	1606/1629 (98%)
EPI603902	A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI603901	A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1615/1643 (98%)
EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI537618	A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1615/1643 (98%)
EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI348155	A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2878.2	0.000000e+00	1613/1642 (98%)
EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2876.4	0.000000e+00	1613/1642 (98%)
EPI348151	A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)	2876.4	0.000000e+00	1613/1642 (98%)
EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2874.5	0.000000e+00	1614/1643 (98%)
EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2874.5	0.000000e+00	1613/1642 (98%)
EPI460395	A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)	2874.5	0.000000e+00	1613/1642 (98%)

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Vaccine Resistant 2015 H5N1 Sequence In Zagazig Egypt

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