University of Florida has released two additional Zika sequences from December 2014 Haiti isolates.  These two partial sequences match each other and the full 2014 Haiti sequence.  All three have A9327G, which is also present in the 2016 Haiti sequence.  This polymorphism is found in earlier sequences from the Asian lineage as well as the French Polynesia sequence and multiple sequences from the 2014 Easter Island outbreak.

Edited April 15, 201610 yr by niman

LOCUS       KX059013                1024 bp    cRNA    linear   VRL 12-APR-2016
DEFINITION  Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds.
ACCESSION   KX059013
VERSION     KX059013.1  GI:1016884666
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Lednicky,J.A., Morris,J.G. Jr., Beau De Rochars,V.M., Elbadry,M.A.,
            Okech,B.A. and Loeb,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2016) Environmental and Global Health, University
            of Florida - Gainesville, 1225 Center Drive, Room 4155,
            Gainesville, FL 32610, USA
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Zika virus"
                     /mol_type="viral cRNA"
                     /isolate="Haiti/1227/2014"
                     /isolation_source="plasma"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Haiti"
                     /collection_date="15-Dec-2014"
                     /identified_by="John Lednicky"
     CDS             <1..>1024
                     /codon_start=3
                     /product="NS5"
                     /protein_id="AMX81920.1"
                     /db_xref="GI:1016884667"
                     /translation="EFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGV
                     EGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGHRALA
                     LAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRN
                     MEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRF
                     LNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGRA
                     RVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTGRTTWS
                     IHGKGE"
ORIGIN      
        1 gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta ggggctagat
       61 ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact
      121 caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga
      181 gtcgcatacc aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca
      241 gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg
      301 ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac
      361 cagctgaaaa agggaagaca gttatggaca ttatttcgag acaagaccaa agggggagcg
      421 gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga
      481 atatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga
      541 aagtgaccaa ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg
      601 gagatgattg cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga
      661 atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca
      721 actgggaaga agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga
      781 ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc
      841 caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt
      901 ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc atttgttcat
      961 ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat ggaaagggag
     1021 aatg

http://www.ncbi.nlm.nih.gov/nuccore/KX059013.1

 

 

 

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU509998.2|	Zika virus strain Haiti/1225/2014, complete genome	1847	1847	100%	0.0	100%	KU509998.2
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	1847	1847	100%	0.0	100%	KJ776791.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	1842	1842	100%	0.0	99%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	1842	1842	100%	0.0	99%	KU647676.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	1838	1838	100%	0.0	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	1838	1838	100%	0.0	99%	KU926310.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	1838	1838	100%	0.0	99%	KU729217.2
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	1838	1838	100%	0.0	99%	KU820897.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	1838	1838	100%	0.0	99%	KU321639.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU991811.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	1833	1833	100%	0.0	99%	KU926309.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	1833	1833	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	1833	1833	100%	0.0	99%	KU922923.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	1833	1833	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	1833	1833	100%	0.0	99%	KU853012.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	1833	1833	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	1833	1833	100%	0.0	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	1833	1833	100%	0.0	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU365777.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	1829	1829	100%	0.0	99%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	1829	1829	100%	0.0	99%	KU940224.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	1829	1829	100%	0.0	99%	KU820898.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	1829	1829	100%	0.0	99%	KU729218.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	1829	1829	100%	0.0	99%	KU312312.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU963796.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU955590.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU955589.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU740184.2
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	1824	1824	100%	0.0	99%	KU820899.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU761564.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	1824	1824	100%	0.0	99%	KU744693.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU365778.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	1820	1820	100%	0.0	99%	KF993678.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	1806	1806	100%	0.0	99%	KU866423.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	1806	1806	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	1775	1775	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	1775	1775	100%	0.0	98%	JN860885.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	1775	1775	100%	0.0	98%	EU545988.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1761	1761	95%	0.0	100%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1757	1757	95%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1755	1755	95%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1754	1754	95%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1754	1754	95%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1754	1754	95%	0.0	99%	KM078933.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	1752	1752	100%	0.0	98%	KU681082.3
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1752	1752	95%	0.0	99%	KM078929.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	1750	1750	96%	0.0	99%	KU179098.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	1617	1617	100%	0.0	95%	HQ234499.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1611	1611	87%	0.0	100%	KJ873160.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1429	1429	77%	0.0	100%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1391	1391	77%	0.0	99%	KM851039.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1355	1355	77%	0.0	98%	KM851038.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1353	1353	73%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1346	1346	73%	0.0	99%	KU556802.1

LOCUS       KX059014                1024 bp    cRNA    linear   VRL 12-APR-2016
DEFINITION  Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds.
ACCESSION   KX059014
VERSION     KX059014.1  GI:1016884668
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Lednicky,J.A., Morris,J.G. Jr., Beau De Rochars,V.M., Elbadry,M.A.,
            Okech,B.A. and Loeb,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2016) Environmental and Global Health, University
            of Florida - Gainesville, 1225 Center Drive, Room 4155,
            Gainesville, FL 32610, USA
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Zika virus"
                     /mol_type="viral cRNA"
                     /isolate="Haiti/1230/2014"
                     /isolation_source="plasma"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Haiti"
                     /collection_date="17-Dec-2014"
                     /identified_by="John Lednicky"
     CDS             <1..>1024
                     /codon_start=3
                     /product="NS5"
                     /protein_id="AMX81921.1"
                     /db_xref="GI:1016884669"
                     /translation="EFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGV
                     EGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGHRALA
                     LAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRN
                     MEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRF
                     LNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGRA
                     RVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTGRTTWS
                     IHGKGE"
ORIGIN      
        1 gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta ggggctagat
       61 ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact
      121 caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga
      181 gtcgcatacc aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca
      241 gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg
      301 ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac
      361 cagctgaaaa agggaagaca gttatggaca ttatttcgag acaagaccaa agggggagcg
      421 gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga
      481 atatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga
      541 aagtgaccaa ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg
      601 gagatgattg cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga
      661 atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca
      721 actgggaaga agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga
      781 ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc
      841 caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt
      901 ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc atttgttcat
      961 ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat ggaaagggag
     1021 aatg

http://www.ncbi.nlm.nih.gov/nuccore/KX059014.1

 

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU509998.2|	Zika virus strain Haiti/1225/2014, complete genome	1847	1847	100%	0.0	100%	KU509998.2
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	1847	1847	100%	0.0	100%	KJ776791.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	1842	1842	100%	0.0	99%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	1842	1842	100%	0.0	99%	KU647676.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	1838	1838	100%	0.0	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	1838	1838	100%	0.0	99%	KU926310.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	1838	1838	100%	0.0	99%	KU729217.2
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	1838	1838	100%	0.0	99%	KU820897.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	1838	1838	100%	0.0	99%	KU321639.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU991811.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	1833	1833	100%	0.0	99%	KU926309.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	1833	1833	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	1833	1833	100%	0.0	99%	KU922923.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	1833	1833	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	1833	1833	100%	0.0	99%	KU853012.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	1833	1833	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	1833	1833	100%	0.0	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	1833	1833	100%	0.0	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	1833	1833	100%	0.0	99%	KU365777.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	1829	1829	100%	0.0	99%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	1829	1829	100%	0.0	99%	KU940224.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	1829	1829	100%	0.0	99%	KU820898.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	1829	1829	100%	0.0	99%	KU729218.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	1829	1829	100%	0.0	99%	KU312312.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU963796.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU955590.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU955589.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU740184.2
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	1824	1824	100%	0.0	99%	KU820899.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU761564.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	1824	1824	100%	0.0	99%	KU744693.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	1824	1824	100%	0.0	99%	KU365778.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	1820	1820	100%	0.0	99%	KF993678.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	1806	1806	100%	0.0	99%	KU866423.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	1806	1806	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	1775	1775	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	1775	1775	100%	0.0	98%	JN860885.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	1775	1775	100%	0.0	98%	EU545988.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1761	1761	95%	0.0	100%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1757	1757	95%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1755	1755	95%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1754	1754	95%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1754	1754	95%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1754	1754	95%	0.0	99%	KM078933.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	1752	1752	100%	0.0	98%	KU681082.3
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1752	1752	95%	0.0	99%	KM078929.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	1750	1750	96%	0.0	99%	KU179098.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	1617	1617	100%	0.0	95%	HQ234499.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1611	1611	87%	0.0	100%	KJ873160.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1429	1429	77%	0.0	100%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1391	1391	77%	0.0	99%	KM851039.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1355	1355	77%	0.0	98%	KM851038.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1353	1353	73%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1346	1346	73%	0.0	99%	KU556802.1

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1892	1892	100%	0.0	100%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1892	1892	100%	0.0	100%	KX059013.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	1892	1892	100%	0.0	100%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	1892	1892	100%	0.0	100%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	1892	1892	100%	0.0	100%	KJ776791.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	1886	1886	100%	0.0	99%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	1886	1886	100%	0.0	99%	KU647676.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	1881	1881	100%	0.0	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	1881	1881	100%	0.0	99%	KU926310.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	1881	1881	100%	0.0	99%	KU729217.2
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	1881	1881	100%	0.0	99%	KU820897.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	1881	1881	100%	0.0	99%	KU321639.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	1875	1875	100%	0.0	99%	KU991811.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	1875	1875	100%	0.0	99%	KU926309.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	1875	1875	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	1875	1875	100%	0.0	99%	KU922923.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	1875	1875	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	1875	1875	100%	0.0	99%	KU853012.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	1875	1875	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	1875	1875	100%	0.0	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	1875	1875	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	1875	1875	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	1875	1875	100%	0.0	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	1875	1875	100%	0.0	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	1875	1875	100%	0.0	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	1875	1875	100%	0.0	99%	KU365777.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	1869	1869	100%	0.0	99%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	1869	1869	100%	0.0	99%	KU940224.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	1869	1869	100%	0.0	99%	KU820898.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	1869	1869	100%	0.0	99%	KU729218.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	1869	1869	100%	0.0	99%	KU312312.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KX056898.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KU963796.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KU955590.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KU955589.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KU740184.2
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	1864	1864	100%	0.0	99%	KU820899.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KU761564.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	1864	1864	100%	0.0	99%	KU744693.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	1864	1864	100%	0.0	99%	KU365778.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	1858	1858	100%	0.0	99%	KF993678.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	1842	1842	100%	0.0	99%	KU866423.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	1842	1842	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	1803	1803	100%	0.0	98%	KU955593.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1803	1803	95%	0.0	100%	KM078936.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	1803	1803	100%	0.0	98%	JN860885.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	1803	1803	100%	0.0	98%	EU545988.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1799	1799	95%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1797	1797	95%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1794	1794	95%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1794	1794	95%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1794	1794	95%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1792	1792	95%	0.0	99%	KM078929.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	1786	1786	96%	0.0	99%	KU179098.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	1775	1775	100%	0.0	98%	KU681082.3
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1650	1650	87%	0.0	100%	KJ873160.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	1609	1609	100%	0.0	95%	HQ234499.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1463	1463	77%	0.0	100%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1419	1419	77%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1384	1384	73%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1378	1378	73%	0.0	99%	KU556802.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1375	1375	77%	0.0	98%	KM851038.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	1267	1267	67%	0.0	99%	KU232300.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	1258	1258	67%	0.0	99%	KU232290.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	1254	1254	67%	0.0	99%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	1249	1249	66%	0.0	99%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	1245	1245	66%	0.0	99%	KU232292.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	1242	1242	65%	0.0	99%	KU232298.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	1238	1238	65%	0.0	99%	KU232296.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	1238	1238	66%	0.0	99%	KU232293.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	1234	1234	65%	0.0	99%	KU232295.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	1227	1227	99%	0.0	88%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	1227	1227	99%	0.0	88%	KU955594.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	1227	1227	99%	0.0	88%	KU720415.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	1227	1227	99%	0.0	88%	LC002520.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	1227	1227	99%	0.0	88%	HQ234498.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	1227	1227	99%	0.0	88%	AY632535.2
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	1223	1223	64%	0.0	99%	KU232288.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	1223	1223	99%	0.0	88%	KF268949.1
Select seq gb|AF013415.1|	Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds	1223	1223	99%	0.0	88%	AF013415.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	1221	1221	100%	0.0	88%	DQ859059.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	1219	1219	64%	0.0	99%	KU232289.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	1218	1218	99%	0.0	88%	KU955595.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	1218	1218	99%	0.0	88%	KU955591.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	1216	1216	64%	0.0	99%	KU232299.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	1212	1212	99%	0.0	88%	KU955592.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	1210	1210	65%	0.0	99%	KU232291.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	1206	1206	99%	0.0	88%	KF383116.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	1205	1205	99%	0.0	88%	KF383121.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	1205	1205	99%	0.0	88%	KF383119.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	1192	1192	99%	0.0	88%	KF268950.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	1192	1192	99%	0.0	88%	KF268948.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	1190	1190	99%	0.0	88%	HQ234501.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	1182	1182	99%	0.0	88%	KF383118.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	1179	1179	99%	0.0	87%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	1179	1179	99%	0.0	87%	HQ234500.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	1173	1173	99%	0.0	87%	KF383117.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	1123	1123	99%	0.0	87%	KF383115.1
Select seq gb|KU867812.1|	Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds	998	998	52%	0.0	100%	KU867812.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	843	843	99%	0.0	82%	KF383120.1
Select seq gb|KF383103.1|	Zika virus strain ArA986 nonstructural protein 5 gene, partial cds	841	841	69%	0.0	88%	KF383103.1
Select seq gb|KF383086.1|	Zika virus strain ArA975 nonstructural protein 5 gene, partial cds	841	841	69%	0.0	88%	KF383086.1
Select seq gb|KF383104.1|	Zika virus strain ArA982 nonstructural protein 5 gene, partial cds	808	808	69%	0.0	87%	KF383104.1
Select seq gb|KF383085.1|	Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds	802	802	69%	0.0	87%	KF383085.1
Select seq gb|KF383106.1|	Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds	797	797	69%	0.0	87%	KF383106.1
Select seq gb|KF383114.1|	Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds	791	791	69%	0.0	87%	KF383114.1
Select seq gb|KF383107.1|	Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds	791	791	69%	0.0	87%	KF383107.1
Select seq gb|KF383088.1|	Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds	791	791	69%	0.0	87%	KF383088.1
Select seq gb|KF383087.1|	Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds	785	785	69%	0.0	87%	KF383087.1
Select seq gb|KF383089.1|	Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds	769	769	69%	0.0	86%	KF383089.1
Select seq gb|KF383101.1|	Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds	763	763	69%	0.0	86%	KF383101.1
Select seq gb|KF383097.1|	Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds	763	763	69%	0.0	86%	KF383097.1
Select seq gb|KF383099.1|	Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds	758	758	69%	0.0	86%	KF383099.1
Select seq gb|KF383098.1|	Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds	752	752	69%	0.0	86%	KF383098.1
Select seq gb|KF383113.1|	Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds	713	713	69%	0.0	85%	KF383113.1
Select seq gb|KF383092.1|	Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds	555	555	69%	7e-157	81%	KF383092.1
Select seq gb|KF383093.1|	Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds	553	553	69%	3e-156	81%	KF383093.1
Select seq gb|KF383091.1|	Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds	542	542	69%	5e-153	81%	KF383091.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	475	1214	64%	6e-133	100%	KU940227.1
Select seq gb|KF258813.1|	Zika virus isolate Java non-structural protein 5 mRNA, partial cds	431	431	23%	1e-119	98%	KF258813.1

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1803	1803	100%	0.0	100%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1803	1803	100%	0.0	100%	KX059013.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	1803	1803	100%	0.0	100%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	1803	1803	100%	0.0	100%	KU509998.3
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1803	1803	100%	0.0	100%	KM078936.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	1803	1803	100%	0.0	100%	KJ776791.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1799	1799	100%	0.0	99%	KM078961.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	1797	1797	100%	0.0	99%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	1797	1797	100%	0.0	99%	KU647676.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1797	1797	100%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1794	1794	100%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1794	1794	100%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1794	1794	100%	0.0	99%	KM078933.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	1792	1792	100%	0.0	99%	KU870645.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	1792	1792	100%	0.0	99%	KU926310.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	1792	1792	100%	0.0	99%	KU729217.2
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	1792	1792	100%	0.0	99%	KU820897.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	1792	1792	100%	0.0	99%	KU321639.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1792	1792	100%	0.0	99%	KM078929.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	1786	1786	100%	0.0	99%	KU991811.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	1786	1786	100%	0.0	99%	KU926309.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	1786	1786	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	1786	1786	100%	0.0	99%	KU922923.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	1786	1786	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	1786	1786	100%	0.0	99%	KU853012.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	1786	1786	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	1786	1786	100%	0.0	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	1786	1786	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	1786	1786	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	1786	1786	100%	0.0	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	1786	1786	100%	0.0	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	1786	1786	100%	0.0	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	1786	1786	100%	0.0	99%	KU365777.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	1781	1781	100%	0.0	99%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	1781	1781	100%	0.0	99%	KU940224.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	1781	1781	100%	0.0	99%	KU820898.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	1781	1781	100%	0.0	99%	KU729218.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	1781	1781	100%	0.0	99%	KU312312.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KX056898.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KU963796.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KU955590.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KU955589.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KU740184.2
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	1775	1775	100%	0.0	99%	KU820899.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KU761564.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	1775	1775	100%	0.0	99%	KU744693.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	1775	1775	100%	0.0	99%	KU365778.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	1770	1770	100%	0.0	99%	KF993678.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	1753	1753	100%	0.0	99%	KU866423.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	1753	1753	100%	0.0	99%	KU681081.3
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	1746	1746	98%	0.0	99%	KU179098.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	1714	1714	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	1714	1714	100%	0.0	98%	JN860885.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	1714	1714	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	1687	1687	100%	0.0	98%	KU681082.3
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1650	1650	91%	0.0	100%	KJ873160.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	1520	1520	100%	0.0	95%	HQ234499.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1463	1463	81%	0.0	100%	KJ873161.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1384	1384	77%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1378	1378	76%	0.0	99%	KU556802.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1375	1375	78%	0.0	99%	KM851039.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1330	1330	78%	0.0	98%	KM851038.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	1267	1267	70%	0.0	99%	KU232300.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	1258	1258	70%	0.0	99%	KU232290.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	1254	1254	70%	0.0	99%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	1249	1249	69%	0.0	99%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	1245	1245	69%	0.0	99%	KU232292.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	1242	1242	69%	0.0	99%	KU232298.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	1238	1238	68%	0.0	99%	KU232296.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	1238	1238	69%	0.0	99%	KU232293.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	1234	1234	68%	0.0	99%	KU232295.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	1223	1223	68%	0.0	99%	KU232288.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	1219	1219	67%	0.0	99%	KU232289.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	1216	1216	67%	0.0	99%	KU232299.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	1210	1210	68%	0.0	99%	KU232291.1

Zika virus NS5 gene, partial cds.

PopSet: 1016884666

GenBank FASTA

Sequences in this data set

• KX059014.1Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds
• KX059013.1Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds

http://www.ncbi.nlm.nih.gov/popset?DbFrom=nuccore&Cmd=Link&LinkName=nuccore_popset&IdsFromResult=1016884668