niman Posted April 30, 2016 Report Share Posted April 30, 2016 UCSF researchers have released a series of partial Bahia, Brazil sequence. Link to comment Share on other sites More sharing options...
niman Posted April 30, 2016 Author Report Share Posted April 30, 2016 LOCUS KX101060 10331 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia02, partial genome. ACCESSION KX101060 VERSION KX101060.1 GI:1022831289 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10331) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10331) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10331 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia02" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="May-2015" CDS <1..10032 /codon_start=1 /product="polyprotein" /protein_id="ANA85187.1" /db_xref="GI:1022831290" /translation="IKKFKKDLAAMLRIINARKEKKRRGADTSVGIVGLLLTTAMAAE VTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQIMDLGHXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTXLESREY TKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKVIYLVMILLIAPAYSIRCIGVSN RDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASIS DMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKK MTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGG FGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKL RLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVG RLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEAT VRGAKRMAVLGDTAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXGICGISSVSRMENIMWRSVEGELNAILEENGV QLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTRGPSLRSTTASGRVIEEWCCXXX XXXPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQE GLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLAILMGATFAEMNTGGDVAHLALI AAFKVRPALLVSFIFRANWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXLGLTAVRLVDPINVVGLLLLTRSGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWYVYVKTGKRSGALWDVPAPKEVK KGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDV KQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDY PAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGRREEETPVECFEPSMLKKKQ LTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTT AVNVTHSGTEIVDLMCHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISXXXXXXXX XXXXXXXXXXXXXXXXXXXVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCA ETDEDHAHWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRGDLPVWLAYQVASAGITYTDRRWCFDSTTNNTIMEDSVPAEVWTRHGEKRVLKPRW MDARVCSDHAALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLMRAE TGSRPYKAAAAQMPETLETIMLLGLLGTVSLGIFFVLMRNKGIGKMGFGMVTLXASAW LMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSPQDNQMAIIIMVAVGLLGLITAN ELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPASAWAIYAALTTFITPAVQHAVT TSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPLLMIGCYSQLTPLTLIVAIILLV AHYMYLIPGLQAAAARAAQKRTAAGXXXXXXXXXXXXTDIDTMTIDPQVEKKMGQVLL IAVAVSSAXLSRTAWGWGEAGALITAATSTLWEGSPNKYWNSSTATSLXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCREEA RRALKDGVATGGHAVSRGSAKLRWLVERGYLQPHGKVIDLGCGRGGWSYYAATIRKVQ EVXXXXXXXXGHEEPVLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPEV EEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGGLVRVPLSRN STHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDVNLGSGTRAVVSCAEA PNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHGSYEAPTQGSASSLINGVVRLLS KPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMSMVSSWLWKELGK HKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFWALVDKEREHHLRG ECQSXXXNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENS GGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGH RALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLXXX XXXXXXXXXXXEMQDLWLLRRPEKVTNWLQSNGWDRLXXXXXXXXXXXXXXXXXXFAH ALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDEL IGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTGR TTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSL IGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGSTPGVL" mat_peptide 1..135 /product="capsid peptide" mat_peptide 136..405 /product="propeptide" mat_peptide 406..630 /product="membane protein peptide" mat_peptide 631..2145 /product="envelope protein peptide" mat_peptide 2146..3231 /product="NS1 peptide" mat_peptide 3232..3885 /product="NS2A peptide" mat_peptide 3886..4317 /product="NS2B peptide" mat_peptide 4318..6126 /product="NS3 peptide" mat_peptide 6127..6567 /product="NS4A peptide" mat_peptide 6568..8073 /product="NS4B peptide" mat_peptide 8074..10029 /product="NS5 peptide" gap 1919..2298 /estimated_length=380 gap 2546..2915 /estimated_length=370 gap 3496..3796 /estimated_length=301 gap 3877..4134 /estimated_length=258 gap 5059..5366 /estimated_length=308 gap 5728..5873 /estimated_length=146 gap 6088..6200 /estimated_length=113 gap 7238..7424 /estimated_length=187 3'UTR 10033..10331 ORIGIN 1 ataaagaagt tcaagaaaga tctggctgcc atgctgagaa taatcaatgc taggaaggag 61 aagaagagac gaggcgcaga tactagtgtc ggaattgttg gcctcctgct gaccacagct 121 atggcagcgg aggtcactag acgtgggagt gcatactata tgtacttgga cagaaacgat 181 gctggggagg ccatatcttt tccaaccaca ttggggatga ataagtgtta tatacagatc 241 atggatcttg gacacannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngttgtgtac 361 ggaacctgcc atcacaaaaa aggtgaagca cggagatcta gaagagctgt gacgctcccc 421 tcccattcca ctaggaagct gcaaacgcgg tcgcaaacct gkttggaatc aagagaatac 481 acaaagcact tgattagagt cgaaaattgg atattcagga accctggctt cgcgttagca 541 gcagctgcca tcgcttggct tttgggaagc tcaacgagcc aaaaagtcat atacttggtc 601 atgatactgc tgattgcccc ggcatacagc atcaggtgca taggagtcag caatagggac 661 tttgtggaag gtatgtcagg tgggacttgg gttgatgttg tcttggaaca tggaggttgt 721 gtcaccgtaa tggcacagga caaaccgact gtcgacatag agctggttac aacaacagtc 781 agcaacatgg cggaggtaag atcctactgc tatgaggcat caatatcaga catggcttcg 841 gacagccgct gcccaacaca aggtgaagcc taccttgaca agcaatcaga cactcaatat 901 gtctgcaaaa gaacgttagt ggacagaggc tggggaaatg gatgtggact ttttggcaaa 961 gggagtctgg tgacatgcgc taagtttgca tgctccaaga aaatgaccgg gaagagcatc 1021 cagccagaga atctggagta ccggataatg ctgtcagttc atggctccca gcacagtggg 1081 atgatcgtta atgacacagg acatgaaact gatgagaata gagcgaaggt tgagataacg 1141 cccaattcac caagagccga agccaccctg gggggttttg gaagcctagg acttgattgt 1201 gaaccgagga caggccttga cttttcagat ttgtattact tgactatgaa taacaagcac 1261 tggttggttc acaaggagtg gttccacgac attccattac cttggcacgc tggggcagac 1321 accggaactc cacactggaa caacaaagaa gcactggtag agttcaagga cgcacatgcc 1381 aaaaggcaaa ctgtcgtggt tctagggagt caagaaggag cagttcacac ggcccttgct 1441 ggagctctag aggctgagat ggatggtgca aagggaaggc tgtcctctgg ccacttgaaa 1501 tgtcgcctga aaatggataa acttagattg aagggcgtgt catactcctt gtgtaccgca 1561 gcgttcacat tcaccaagat cccggctgaa acactgcacg ggacagtcac agtggaggta 1621 cagtacgcag ggactgatgg accttgcaag gttccagctc agatggcggt ggacatgcaa 1681 actctgaccc cagttgggag gttgataacc gctaaccccg taatcactga aagcactgag 1741 aactctaaga tgatgctgga acttgatcca ccatttgggg actcctacat tgtcatagga 1801 gtcggggaga agaagatcac ccaccactgg cacaggagtg gcagcaccat tggaaaagca 1861 tttgaagcca ctgtgagagg tgccaagaga atggcagtct tgggagacac agcctggg [gap 380 bp] Expand Ns 2299 gg tatctgcggg atctcctctg tttcaagaat ggaaaacatc 2341 atgtggagat cagtagaagg ggagctcaac gcaatcctgg aagagaatgg agttcaactg 2401 acggtcgttg tgggatctgt aaaaaacccc atgtggagag gtccacagag attgcccgtg 2461 cctgtgaacg agctgcccca cggctggaag gcttggggga aatcgtactt cgtcagagca 2521 gcaaagacaa ataacagctt tgtcg [gap 370 bp] Expand Ns 2916 gggct acaggaccca aatgaaaggg 2941 ccatggcaca gtgaagagct tgaaattcgg tttgaggaat gcccaggcac taaggtccac 3001 gtggaggaaa catgtggaac aagaggacca tctctgagat caaccactgc aagcggaagg 3061 gtgatcgagg aatggtgctg cagnnnnnnn nnnnnnnccc cactgtcgtt ccgggctaaa 3121 gatggctgtt ggtatggaat ggagataagg cccaggaaag aaccagaaag caacttagta 3181 aggtcaatgg tgactgcagg atcaactgat cacatggatc acttctccct tggagtgctt 3241 gtgattctgc tcatggtgca ggaagggctg aagaagagaa tgaccacaaa gatcatcata 3301 agcacatcaa tggcagtgct ggtagctatg atcctgggag gattttcaat gagtgacctg 3361 gctaagcttg caattttgat gggtgccacc ttcgcggaaa tgaacactgg aggagatgta 3421 gctcatctgg cgctgatagc ggcattcaaa gtcagaccag cgttgctggt atctttcatc 3481 ttcagagcta attgg [gap 301 bp] Expand Ns 3797 ccct gggactaacc gctgtgaggc tggtcgaccc catcaacgtg 3841 gtgggactgc tgttgctcac aaggagtggg aagcgg [gap 258 bp] Expand Ns 4135 gtggag 4141 gatgacggtc cccccatgag agagatcata ctcaaggtgg tcctgatgac catctgtggc 4201 atgaacccaa tagccatacc ctttgcagct ggagcgtggt acgtatacgt gaagactgga 4261 aaaaggagtg gtgctctatg ggatgtgcct gctcccaagg aagtaaaaaa gggggagacc 4321 acagatggag tgtacagagt aatgactcgt agactgctag gttcaacaca agttggagtg 4381 ggagttatgc aagagggggt ctttcacact atgtggcacg tcacaaaagg atccgcgctg 4441 agaagcggtg aagggagact tgatccatac tggggagatg tcaagcagga tctggtgtca 4501 tactgtggtc catggaagct agatgccgcc tgggacgggc acagcgaggt gcagctcttg 4561 gccgtgcccc ccggagagag agcgaggaac atccagactc tgcccggaat atttaagaca 4621 aaggatgggg acattggagc ggttgcgctg gattacccag caggaacttc aggatctcca 4681 atcctagaca agtgtgggag agtgatagga ctttatggca atggggtcgt gatcaaaaat 4741 gggagttatg ttagtgccat cacccaaggg aggagggagg aagagactcc tgttgagtgc 4801 ttcgagcctt cgatgctgaa gaagaagcag ctaactgtct tagacttgca tcctggagct 4861 gggaaaacca ggagagttct tcctgaaata gtccgtgaag ccataaaaac aagactccgt 4921 actgtgatct tagctccaac cagggttgtc gctgctgaaa tggaggaagc ccttagaggg 4981 cttccagtgc gttatatgac aacagcagtc aatgtcaccc actctggaac agaaatcgtc 5041 gacttaatgt gccatgcc [gap 308 bp] Expand Ns 5367 gaac ggcaatgaga tcgcagcttg tctgacaaag 5401 gctggaaaac gggtcataca gctcagcaga aagacttttg agacagagtt ccagaaaaca 5461 aaacatcaag agtgggactt tgtcgtgaca actgacattt cagnnnnnnn nnnnnnnnnn 5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5581 nnagtcattc tggctggacc catgcctgtc acacatgcca gcgctgccca gaggaggggg 5641 cgcataggca ggaatcccaa caaacctgga gatgagtatc tgtatggagg tgggtgcgca 5701 gagactgacg aagaccatgc acactgg [gap 146 bp] Expand Ns 5874 gaaaaga 5881 ggagatcttc ctgtttggct ggcctatcag gttgcatctg ccggaataac ctacacagat 5941 agaagatggt gctttgatag cacgaccaac aacaccataa tggaagacag tgtgccggca 6001 gaggtgtgga ccagacacgg agagaaaaga gtgctcaaac cgaggtggat ggatgccaga 6061 gtttgttcag atcatgcggc cctgaag [gap 113 bp] Expand Ns 6201 cgctgtgctc atgcgggcag agactggaag caggccttac 6241 aaagccgcgg cggcccaaat gccggagacc ctagagacca ttatgctttt ggggttgcta 6301 ggaacagtct cgctgggaat ctttttcgtc ttgatgagga acaagggcat agggaagatg 6361 ggctttggaa tggtgactct trgggccagc gcatggctca tgtggctctc ggaaattgag 6421 ccagccagaa ttgcatgtgt cctcattgtt gtgttcctat tgctggtggt gctcatacct 6481 gagccagaaa agcaaagatc tccccaggac aaccaaatgg caatcatcat catggtagca 6541 gtaggtcttc tgggcttgat taccgccaat gaactcggat ggttggagag aacaaagagt 6601 gacctaagcc atctaatggg aaggagagag gagggggcaa ccataggatt ctcaatggac 6661 attgacctac ggccagcctc agcttgggcc atctatgctg ccttgacaac tttcattacc 6721 ccagccgtcc aacatgcagt gaccacttca tacaacaact actccttaat ggcgatggcc 6781 acgcaagctg gagtgttgtt tggtatgggc aaagggatgc cattctacgc atgggacttt 6841 ggagtcccgc tgctaatgat aggttgctac tcacaattaa cacccctgac cctaatagtg 6901 gccatcattt tgctcgtggc gcactacatg tacttgatcc cagggctgca ggcagcagct 6961 gcgcgtgctg cccagaagag aacggcagct ggcannnnnn nnnnnnnnnn nnnnnnnnnn 7021 nnnnnnnnga ctgacattga cacaatgaca attgaccccc aagtggagaa aaagatggga 7081 caggtgctac tcatagcagt agccgtctcc agcgccntac tgtcgcggac cgcctggggg 7141 tggggggagg ctggggccct gatcacagcc gcaacttcca ctttgtggga aggctctccg 7201 aacaagtact ggaactcctc tacagccact tcactgt [gap 187 bp] Expand Ns 7425 gtgcag agaagaggcc 7441 cgccgcgccc tcaaggacgg tgtggcaacg ggaggccatg ctgtgtcccg aggaagtgca 7501 aagctgagat ggttggtgga gcggggatac ctgcagcccc atggaaaggt cattgatctt 7561 ggatgtggca gagggggctg gagttactac gccgccacca tccgcaaagt tcaagaagtg 7621 aannnnnnnn nnnnnnnnnn nnnnggtcat gaagaacccg tgttggtgca aagctatggg 7681 tggaacatag tccgtcttaa gagtggggtg gacgtctttc atatggcggc tgagccgtgt 7741 gacacgttgc tgtgtgacat aggtgagtca tcatctagtc ctgaagtgga agaagcacgg 7801 acgctcagag ttctctccat ggtgggggat tggcttgaaa aaagaccagg agccttttgt 7861 ataaaagtgt tgtgcccata caccagcact atgatggaaa ccctggagcg actgcagcgt 7921 aggtatgggg gaggactggt cagagtgcca ctctcccgca actctacaca tgagatgtac 7981 tgggtctctg gagcgaaaag caacaccata aaaagtgtgt ccaccacgag ccagctcctc 8041 ttggggcgca tggacgggcc taggaggcca gtgaaatatg aggaggatgt gaatctcggc 8101 tctggcacgc gggctgtggt aagctgcgct gaagctccca acatgaagat cattggtaac 8161 cgcattgaaa ggatccgcag tgagcacgcg gaaacgtggt tctttgacga gaaccaccca 8221 tataggacat gggcttacca tggaagctat gaggccccca cacaagggtc agcgtcctct 8281 ctaataaacg gggttgtcag gctcctgtca aaaccctggg atgtggtgac tggagtcaca 8341 ggaatagcca tgaccgacac cacaccgtat ggtcagcaaa gagttttcaa ggaaaaagtg 8401 gacactaggg tgccagaccc ccaagaaggc actcgtcagg ttatgagcat ggtctcttcc 8461 tggttgtgga aagagctagg caaacacaaa cggccacgag tctgtaccaa agaagagttc 8521 atcaacaagg ttcgtagcaa tgcagcatta ggggcaatat ttgaagagga aaaagagtgg 8581 aagactgcag tggaagctgt gaacgatcca aggttctggg ctctagtgga caaggaaaga 8641 gagcaccacc tgagaggaga gtgccagagt tgnnnnnnca acatgatggg aaaaagagaa 8701 aagaaacaag gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta 8761 ggggctagat ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg 8821 agagagaact caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta 8881 gaagagatga gtcgcatacc aggaggaagg atgtatgcag atgacactgc tggctgggac 8941 acccgcatca gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa 9001 gggcacaggg ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag 9061 gtccttagac cagctgaaaa agggaaaaca gttatggaca ttatttcgag acaagaccaa 9121 agggggagcg gacaagttgt cacttacgct ctcaacacat ttaccaacct agnnnnnnnn 9181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncgagatgc aagacttgtg gctgctgcgg 9241 aggccagaga aagtgaccaa ctggttgcag agcaacggat gggataggct nnnnnnnnnn 9301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnggtttgc acatgccctc 9361 aggttcttga atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact 9421 ggatgggaca actgggaaga agttccgttt tgctcccacc acttcaacaa gctccatctc 9481 aaggacggga ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc 9541 cgcgtctctc caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat 9601 gcgcaaatgt ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc 9661 atttgctcat ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat 9721 ggaaagggag aatggatgac cactgaagac atgcttgtgg tgtggaacag agtgtggatt 9781 gaggagaacg accacatgga agacaagacc ccagttacga aatggacaga cattccctat 9841 ttgggaaaaa gggaagactt gtggtgtgga tctctcatag ggcacagacc gcgcaccacc 9901 tgggctgaga acattaaaaa cacagtcaac atggtgcgca ggatcatagg tgatgaagaa 9961 aagtacatgg actacctatc cacccaagtt cgctacttgg gtgaagaagg gtctacacct 10021 ggagtgctgt aagcaccaat cttaatgttg tcaggcctgc tagtcagcca cagcttgggg 10081 aaagctgtgc agcctgtgac ccccccagga gaagctggga aaccaagcct atagtcaggc 10141 cgagaacgcc atggcacgga agaagccatg ctgcctgtga gcccctcaga ggacactgag 10201 tcaaaaaacc ccacgcgctt ggaggcgcag gatgggaaaa gaaggtggcg accttcccca 10261 cccttcaatc tggggcctga actggagatc agctgtggat ctccagaaga gggactagtg 10321 gttagaggag a Link to comment Share on other sites More sharing options...
niman Posted April 30, 2016 Author Report Share Posted April 30, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome48071399078%0.0100%KX101060.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome47891394878%0.096%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome47891394178%0.096%KU940224.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome47741389878%0.096%KU509998.3Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome47741388778%0.096%KU321639.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds47731386478%0.096%KU647676.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome47691386578%0.096%KX051563.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome47651384578%0.096%KX087102.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome47651385678%0.096%KU926309.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds47651384578%0.096%KU820897.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome47621383378%0.095%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome47621383378%0.095%KU926310.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds47621388578%0.095%KU729218.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome47621386478%0.095%KU527068.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds47601387478%0.095%KU991811.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome47601384578%0.095%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome47601384278%0.095%KU922923.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds47601387478%0.095%KJ776791.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome47561381778%0.095%KX087101.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome47531381878%0.095%KU501215.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds47511384978%0.095%KU729217.2Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome47451385178%0.095%KU707826.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome47441380678%0.095%KX117076.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome47441384978%0.095%KU497555.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds47421383578%0.095%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds47381384478%0.095%KU365779.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome47351379378%0.095%KU820899.2Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds47351381778%0.095%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds47331382678%0.095%KU365777.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds47291378878%0.095%KU963796.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome47201375078%0.095%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome46811363478%0.095%KU681081.3Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome46721374877%0.095%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome46701374877%0.095%KU853012.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds46621372177%0.095%KU955589.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds46551373777%0.095%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds46371371277%0.095%KU740184.2Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome46081340778%0.094%KU955593.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome45451318478%0.094%KU681082.3Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds43511342576%0.095%KU761564.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds43381342276%0.095%KU312312.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds42221331275%0.095%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds42221331275%0.095%KU501216.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds42131328375%0.095%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds42041328375%0.095%KX056898.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds41451316975%0.094%KU866423.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds41181299275%0.094%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds40801288175%0.094%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds40781281975%0.094%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds37071188275%0.091%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds34581002478%0.086%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID34581000878%0.086%LC002520.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome3454998678%0.086%KU955594.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds3449998678%0.085%KU963573.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome3445996878%0.085%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome3440998178%0.085%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome3431996878%0.085%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome3422994578%0.085%KU955591.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds3391993078%0.085%KF268949.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds3353993078%0.085%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds3353993878%0.085%KF268948.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds3012958476%0.084%KU963574.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds3007944375%0.085%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds2978945175%0.084%KF383116.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds2964953775%0.084%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds2964953075%0.084%HQ234498.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds2942927575%0.084%KF383118.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds2919944775%0.084%HQ234501.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds2913937775%0.084%HQ234500.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds2892946175%0.084%KF383115.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds2879938075%0.084%KF383117.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds2792369119%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds2778367119%0.099%KU312313.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds2562913572%0.083%KF383121.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds2315275014%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds2300326217%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds2287324917%0.099%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2287228712%0.099%KJ634273.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome19501142569%0.092%KU940227.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence1804766570%0.083%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome16631159465%0.099%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome16581059859%0.099%KX101066.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1654165411%0.090%KU179098.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds164917959%0.099%KU740199.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome1577909552%0.096%KX101064.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds148914899%0.090%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds148914899%0.090%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds140214029%0.090%KM078936.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds140214029%0.090%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds140014009%0.090%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds140014009%0.090%KM078970.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds140014009%0.090%KM078961.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds139813989%0.090%KM078929.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds139513959%0.090%KM078933.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds125212528%0.089%KJ873160.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds122312236%0.098%KT200609.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds107610767%0.088%KJ873161.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107210728%0.088%KF270886.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds103410347%0.087%KM851039.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1032621534%0.096%KX101062.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds102910299%0.080%AF013415.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds102010207%0.086%KM851038.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds101410148%0.086%AF372422.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds100910097%0.087%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds100210027%0.087%KU556802.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds99614548%0.098%KU686218.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9719717%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9669667%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9579577%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9539537%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9539537%0.088%KF383029.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9489487%0.088%KF383033.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9469467%0.087%EU303241.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome931670739%0.092%KX101067.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9309307%0.087%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9309307%0.087%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9269267%0.087%KF383031.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds8978977%0.087%KF383045.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds8958956%0.086%KU232300.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds8938937%0.086%KF383043.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome890594234%0.090%KX101063.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8888887%0.086%KF383041.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds8868866%0.086%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds8848846%0.086%KU232297.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8848847%0.086%KF383042.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds8778776%0.086%KU232292.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds8758756%0.086%KU232294.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds8708706%0.086%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds8668666%0.086%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds8668666%0.086%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds8618616%0.086%KU232295.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8578577%0.085%KF383040.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds8508506%0.086%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds8478476%0.086%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds8438436%0.085%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds8418416%0.085%KU232291.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8368364%0.099%AB908162.1Select seq gb|KF383083.1|Zika virus strain AnD30332 3' UTR8298295%0.095%KF383083.1Select seq gb|KF383052.1|Zika virus strain ArD165531 3' UTR8298295%0.095%KF383052.1Select seq gb|KF383064.1|Zika virus strain ArD127994 3' UTR8258255%0.094%KF383064.1Select seq gb|KF383049.1|Zika virus strain ArD7117 3' UTR8258255%0.094%KF383049.1Select seq gb|KF383048.1|Zika virus strain ArD9957 3' UTR8258255%0.094%KF383048.1Select seq gb|KF383047.1|Zika virus strain HD78788 3' UTR8218215%0.094%KF383047.1Select seq gb|KF383066.1|Zika virus strain ArD127987 3' UTR8208205%0.094%KF383066.1Select seq gb|KF383065.1|Zika virus strain ArD127988 3' UTR8208205%0.094%KF383065.1Select seq gb|KF383072.1|Zika virus strain ArA982 3' UTR8188185%0.094%KF383072.1Select seq gb|KF383054.1|Zika virus strain ArD158084 3' UTR8188185%0.094%KF383054.1Select seq gb|KF383069.1|Zika virus strain ArD127707 3' UTR8168165%0.094%KF383069.1Select seq gb|KF383073.1|Zika virus strain ArA975 3' UTR8148145%0.094%KF383073.1Select seq gb|KF383071.1|Zika virus strain ArA986 3' UTR8148145%0.094%KF383071.1Select seq gb|KF383074.1|Zika virus strain ArA506 3' UTR8098095%0.094%KF383074.1Select seq gb|KF383068.1|Zika virus strain ArD127710 3' UTR8078075%0.094%KF383068.1Select seq gb|KF383050.1|Zika virus strain ArD30156 3' UTR8018015%0.093%KF383050.1Select seq gb|KF383070.1|Zika virus strain ArB1362 3' UTR8008005%0.093%KF383070.1Select seq gb|KF383079.1|Zika virus strain ArA27106 3' UTR7987985%0.093%KF383079.1Select seq gb|KF383076.1|Zika virus strain ArA27407 3' UTR7927925%0.093%KF383076.1Select seq gb|KF383063.1|Zika virus strain ArD128000 3' UTR7927925%0.093%KF383063.1Select seq gb|KF383081.1|Zika virus strain ArA27096 3' UTR7897895%0.093%KF383081.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds7837835%0.090%KU867812.1Select seq gb|KF383080.1|Zika virus strain ArA27101 3' UTR7837835%0.093%KF383080.1Select seq gb|KF383075.1|Zika virus strain ArA27443 3' UTR7837835%0.093%KF383075.1Select seq gb|KF383051.1|Zika virus strain ArD30101 3' UTR7627625%0.092%KF383051.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7087087%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7047047%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7047047%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds6996997%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds6976977%0.081%KF383021.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds695283865%0.069%DQ859064.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6816817%0.080%KF383019.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6776773%0.097%KF258813.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6456453%8e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6216213%9e-17399%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6166163%4e-17199%KX062044.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds6166166%4e-17177%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds6166166%4e-17177%KF383086.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds5925926%4e-16476%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds5805806%3e-16076%KF383085.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5785783%9e-16099%KR815989.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds5715716%1e-15775%KF383114.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds5715716%1e-15775%KF383088.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds5655656%6e-15675%KF383106.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds5655656%6e-15675%KF383087.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds5625626%7e-15575%KF383107.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds5535536%4e-15275%KF383089.1Select seq gb|KF383062.1|Zika virus strain ArD132912 3' UTR5535535%4e-15283%KF383062.1Select seq gb|EU082199.2|Yaounde virus strain Dak Ar Y276 polyprotein gene, complete cds549131837%5e-15168%EU082199.2Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds5475476%2e-15075%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds5475476%2e-15075%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds5445446%2e-14974%KF383099.1Select seq gb|KF383082.1|Zika virus strain ArA1465 3' UTR5445445%2e-14983%KF383082.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds5385386%8e-14874%KF383098.1Select seq gb|KF383056.1|Zika virus strain ArD149938 3' UTR5385385%8e-14883%KF383056.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5365362%3e-14799%KR816334.1Select seq gb|KF383057.1|Zika virus strain ArD147917 3' UTR5365365%3e-14783%KF383057.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5355352%1e-14699%KR816333.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5355352%1e-146100%KM212966.1Select seq gb|KF383061.1|Zika virus strain ArD132915 3' UTR5355355%1e-14683%KF383061.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds535145839%1e-14667%EF158064.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5315312%1e-14598%KR816335.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5295292%4e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5295292%4e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5295292%4e-14599%KM212963.1Select seq gb|EF158060.1|St. Louis encephalitis virus strain GML 903797 polyprotein gene, partial cds529137138%4e-14567%EF158060.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds5115116%1e-13973%KF383084.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5085082%1e-138100%KJ579441.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds5085086%1e-13873%KF383113.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome506605534%5e-13898%KX101065.1Select seq gb|GQ851604.1|West Nile virus strain G15578 polyprotein gene, complete cds504133137%2e-13767%GQ851604.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds5025022%6e-13799%KJ680134.1Select seq gb|EF158062.1|St. Louis encephalitis virus strain FL 79-411 polyprotein gene, partial cds502137538%6e-13767%EF158062.1Select seq gb|JX041632.1|West Nile virus strain Ig2266, complete genome497138338%2e-13567%JX041632.1Select seq gb|DQ256376.1|West Nile virus strain 804994, complete genome493123435%3e-13467%DQ256376.1Select seq gb|EF158058.1|St. Louis encephalitis virus strain Kern 217 polyprotein gene, partial cds486134238%5e-13266%EF158058.1Select seq gb|DQ525916.1|St. Louis encephalitis virus strain Kern217, complete genome486134238%5e-13266%DQ525916.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome477143136%2e-12967%FJ753286.2Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds468142536%1e-12666%KT823415.1Select seq gb|FJ753287.2|St. Louis encephalitis virus strain 79V-2533, complete genome462139139%5e-12566%FJ753287.2Select seq gb|KJ501495.1|West Nile virus isolate WNV-1/US/BID-V6530/2002, complete genome443120637%5e-11966%KJ501495.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds4395393%6e-11898%KU758878.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254252%1e-11399%KU954085.1Select seq gb|KR348977.1|West Nile virus isolate INYO_25_2011 polyprotein gene, partial cds425116937%1e-11366%KR348977.1Select seq gb|KR348976.1|West Nile virus isolate INYO_2_2011 polyprotein gene, partial cds425116937%1e-11366%KR348976.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds4255864%1e-11388%KF270887.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174172%2e-111100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174172%2e-111100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174172%2e-111100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174172%2e-111100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164162%7e-11199%KT381874.1Select seq gb|KM212961.1|Zika virus isolate NC14-17042014-4554 polyprotein gene, partial cds4084082%1e-108100%KM212961.1 Link to comment Share on other sites More sharing options...
niman Posted April 30, 2016 Author Report Share Posted April 30, 2016 LOCUS KX101061 10564 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia03, partial genome. ACCESSION KX101061 VERSION KX101061.1 GI:1022831291 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10564) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10564) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10564 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia03" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="May-2015" CDS <1..10209 /codon_start=1 /product="polyprotein" /protein_id="ANA85188.1" /db_xref="GI:1022831292" /translation="ARVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGL INRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKKRRGADTSVGIVGLLLTTAMAA EVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQIMDLGHMCDATMSYECPMLDEG VEPDDVDCWCNTTSTWVVYGTCHHKKGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXFRNPGFALAAAAIAWLLGSSTSQKVIYXXXXXXXXXXXXXXXXXXX XXXXXXGMSGGTWVDIVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASI SDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCXXXXXXXXXXXXXXXXXX XXXXXXXXXXXLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLG GFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNK EALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDK LRLKGVSYSLCNAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPV GRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEA TVRGAKRMAVLGDTAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVFVYNDV EAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSRMENIMWRSVEGELNAILEENG VQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSXFVRAAKTNXSFVXDGDTLK ECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDPAVIGTAVKXXXXXXXXXG YWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGIEESDLIIPKSXXXXXXXXXXX XGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTRGPSLRSTTASGRXXXXXXXXX XXXXPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQ EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTGGDVAHLAL IAAFKVRPALLVSFIFXXXXXPRESMLLALASCLLQTAISALEGDLMVLINGFALAWL AIRAMVVPXXXXXXXXXXXXXXXXXXXXXXXXWRAGLATCGGFMLLSLKGKGSVKKNL PFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIE MAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKDAEVTGNXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAWYVYVKTGKRSGALWDVPAPKEV KKXXXXXXXXXXXXXXXXGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGD VKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALD YPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGRREEETPVECFEPSMLKKK QLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMT TAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXMPVTHASAAQRRGRIGRNPNKPGDEYLYGGXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPR WMDARVCSDHAALKSFKEFAAGKRGAALGVMEALGTLPGHMTERFQEAIDNLAVLMRA ETGSRPYKAAAAQMPETLETIMLLGLLGTVSLGIFFVLMRNKGIGKMGFGMVTLGASA WLMWLSEIEPARIACVLIVVFLLLVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPASAWAIYAALTTFITPAVQHAV TTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPLLMIGCYSQLTPLTLIVAIILL VAHYMYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLCNIFRGSYL AGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQMSALEFYSYKKSGITEVCREE ARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGKVIDLGCGRGGWSYYAATIRKV QEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPE VEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETLERLQRRYGGGLVRVPLSR NSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDVNLGSGTRAVVSCAE APNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHGSYXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXTTPYGQQRVFKEKVDTRVPDPQEGTRQVMSMVSSWLWKELG KHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFWALVDKEREHHLR GECQSXXXXXXXXXXXXXXXXXXXXXXXXXXXMWLGARFLEFEALGFLNEDHWMGREN SGGGVEGLGLQXXXXXXXXXXXXXXXXXXXXXXXXXDTRISRFDLENEALITNQMEKG HRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVV QLIRNMEAEEVLEMQDLWLLRRPEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIXXXXX XXXXXXXXXXXXXXXXXXWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDE LIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTG RTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGS LIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGSTPGVL" mat_peptide 1..312 /product="capsid peptide" mat_peptide 313..582 /product="propeptide" mat_peptide 583..807 /product="membane protein peptide" mat_peptide 808..2322 /product="envelope protein peptide" mat_peptide 2323..3408 /product="NS1 peptide" mat_peptide 3409..4062 /product="NS2A peptide" mat_peptide 4063..4494 /product="NS2B peptide" mat_peptide 4495..6303 /product="NS3 peptide" mat_peptide 6304..6744 /product="NS4A peptide" mat_peptide 6745..8250 /product="NS4B peptide" mat_peptide 8251..10206 /product="NS5 peptide" gap 568..690 /estimated_length=123 gap 2096..2365 /estimated_length=270 gap 3442..3578 /estimated_length=137 gap 4264..4402 /estimated_length=139 gap 5316..5529 /estimated_length=214 gap 5868..6050 /estimated_length=183 gap 6652..6752 /estimated_length=101 gap 7111..7405 /estimated_length=295 gap 8429..8534 /estimated_length=106 3'UTR 10210..10564 ORIGIN 1 gcccgtgtga gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat 61 gggcccatca ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca 121 tcactgggtc tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata 181 aagaagttca agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag 241 aagagacgag gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg 301 gcagcggagg tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct 361 ggggaggcca tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg 421 gatcttggac acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg 481 gtggaaccag atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga 541 acctgccatc acaaaaaagg tgaagca [gap 123 bp] Expand Ns 691 ttcaggaacc ctggcttcgc gttagcagca 721 gctgccatcg cttggctttt gggaagctca acgagccaaa aagtcatata cnnnnnnnnn 781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 841 nnnnnnggta tgtcaggtgg gacttgggtt gatattgtct tggaacatgg aggttgtgtc 901 accgtaatgg cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc 961 aacatggcgg aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac 1021 agccgctgcc caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc 1081 tgcaaaagaa cgttagtgga cagaggctgg ggaaatggat gtnnnnnnnn nnnnnnnnnn 1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1201 nnnnnnnnnc tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg 1261 atcgttaatg acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc 1321 aattcaccaa gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa 1381 ccgaggacag gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg 1441 ttggttcaca aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc 1501 ggaactccac actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa 1561 aggcaaactg tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga 1621 gctctagagg ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt 1681 cgcctgaaaa tggataaact tagattgaag ggcgtgtcat actccttgtg taacgcagcg 1741 ttcacattca ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag 1801 tacgcaggga ctgatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact 1861 ctgaccccag ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac 1921 tctaagatga tgctggaact tgatccacca tttggggact cctacattgt cataggagtc 1981 ggggagaaga agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt 2041 gaagccactg tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctggg [gap 270 bp] Expand Ns 2366 gtaca ggggtgttcg tctataacga cgttgaagcc 2401 tggagggaca ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag 2461 caagcctggg aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg 2521 tggagatcag tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg 2581 gtcgttgtgg gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct 2641 gtgaacgagc tgccccacgg ctggaaggct tgggggaaat cgtmcttcgt cagagcagca 2701 aagacaaatm acagctttgt cgnggatggt gacacactga aggaatgccc actcaaacat 2761 agagcatgga acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc 2821 tggctcaagg ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct 2881 gttaagnnnn nnnnnnnnnn nnnnnnnnnn nnnggctact ggattgagag tgagaagaat 2941 gacacatgga ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag 3001 tcccacacat tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttnn 3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngggctaca ggacccaaat gaaagggcca 3121 tggcacagtg aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg 3181 gaggaaacat gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggnn 3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnccccac tgtcgttccg ggctaaagat 3301 ggctgttggt atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg 3361 tcaatggtga ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg 3421 attctgctca tggtgcagga a [gap 137 bp] Expand Ns 3579 ga acactggagg agatgtagct 3601 catctggcgc tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc 3661 nnnnnnnnnn nnnnnccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa 3721 actgcgatct ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc 3781 tggttggcaa tacgagcgat ggttgttcca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngtggagagc aggccttgct 3901 acttgcgggg ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta 3961 ccatttgtca tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg 4021 ggactgctgt tgctcacaag gagtgggaag cggagctggc cccccagcga agtactcaca 4081 gctgttggcc tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct 4141 gggcccatgg ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg 4201 gacatgtaca ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga 4261 aac [gap 139 bp] Expand Ns 4403 cagctgga gcgtggtacg tatacgtgaa gactggaaaa 4441 aggagtggtg ctctatggga tgtgcctgct cccaaggaag taaaaaagnn nnnnnnnnnn 4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnggtt caacacaagt tggagtggga 4561 gttatgcaag agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga 4621 agcggtgaag ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac 4681 tgtggtccat ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc 4741 gtgccccccg gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag 4801 gatggggaca ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc 4861 ctagacaagt gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg 4921 agttatgtta gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc 4981 gagccttcga tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg 5041 aaaaccagga gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact 5101 gtgatcttag ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt 5161 ccagtgcgtt atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac 5221 ttaatgtgcc atgccacctt cacttcacgt ctactacagc caatcagagt ccccaattat 5281 aatctgtata ttatggatga ggcccacttc acaga [gap 214 bp] Expand Ns 5530 g ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct 5581 ggaaaacggg tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa 5641 catcaagagt gggactttgt cgtgacaact gacatttcag nnnnnnnnnn nnnnnnnnnn 5701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5761 nnnnnnnnnn nnnnnnccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc 5821 ataggcagga atcccaacaa acctggagat gagtatctgt atggagg [gap 183 bp] Expand Ns 6051 gaaaagagga 6061 gatcttcctg tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga 6121 agatggtgct ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag 6181 gtgtggacca gacacggaga gaaaagagtg ctcaaaccga ggtggatgga tgccagagtt 6241 tgttcagatc atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg 6301 gctcttggag tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag 6361 gaagccattg acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa 6421 gccgcggcgg cccaaatgcc ggagacccta gagaccatta tgcttttggg gttgctagga 6481 acagtctcgc tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc 6541 tttggaatgg tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca 6601 gccagaattg catgtgtcct cattgttgtg ttcctattgc tggtggtgct c [gap 101 bp] Expand Ns 6753 cggatggt tggagagaac aaagagtgac 6781 ctaagccatc taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt 6841 gacctgcggc cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca 6901 gccgtccaac atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg 6961 caagctggag tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga 7021 gtcccgctgc taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc 7081 atcattttgc tcgtggcgca ctacatgtac [gap 295 bp] Expand Ns 7406 cttca ctgtgtaaca tttttagggg aagttacttg 7441 gctggagctt ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg 7501 ggtggaacag gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc 7561 ctggagttct actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc 7621 cgcgccctca aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag 7681 ctgagatggt tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga 7741 tgtggcagag ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa 7801 ggatacacaa aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg 7861 aacatagtcc gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac 7921 acgttgctgt gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg 7981 ctcagagtcc tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata 8041 aaagtgttgt gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg 8101 tatgggggag gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg 8161 gtctctggag cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg 8221 gggcgcatgg acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct 8281 ggcacgcggg ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc 8341 attgaaagga tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat 8401 aggacatggg cttaccatgg aagctatg [gap 106 bp] Expand Ns 8535 caccac accgtatggt cagcaaagag ttttcaagga aaaagtggac 8581 actagggtgc cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg 8641 ttgtggaaag agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc 8701 aacaaggttc gtagcaatgc agcactaggg gcaatatttg aagaggaaaa agagtggaag 8761 actgcagtgg aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag 8821 caccacctga gaggagagtg ccagagttgn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnatat gtggctaggg 8941 gctagatttc tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga 9001 gagaactcag gaggtggtgt tgaagggctg ggattacaan nnnnnnnnnn nnnnnnnnnn 9061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngggacacc 9121 cgcatcagca ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg 9181 cacagggcct tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc 9241 cttagaccag ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg 9301 gggagcggac aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc 9361 attcggaata tggaggctga ggaagttctc gagatgcaag acttgtggct gctgcggagg 9421 ccagagaaag tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca 9481 gtcagtggag atgattgcgt tgtgaagcca attgannnnn nnnnnnnnnn nnnnnnnnnn 9541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngtggaaacc ctcaactgga 9601 tgggacaact gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag 9661 gacgggaggt ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc 9721 gtctctccag gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg 9781 caaatgtggc agctccttta tttccacaga agggacctcc gactgatggc caatgccatt 9841 tgttcatctg tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga 9901 aagggagaat ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag 9961 gagaacgacc acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg 10021 ggaaaaaggg aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg 10081 gctgagaaca ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag 10141 tacatggact acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga 10201 gtgctgtaag caccagtctt aatgttgtca ggcctgctag tcagccacag cttggggaaa 10261 gctgtgcagc ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga 10321 gaacgccatg gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca 10381 aaaaacccca cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc 10441 ttcaatctgg ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt 10501 agaggagacc ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc 10561 catg Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18461467693%0.0100%KX101061.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome18461442892%0.0100%KX087102.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome18461455593%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome18461457693%0.0100%KU509998.3Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds18461452993%0.0100%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds18461443792%0.0100%KU647676.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds18461400589%0.0100%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome18461447492%0.0100%KU321639.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome18401450893%0.099%KX087101.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds18401446192%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome18401455193%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome18401442192%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome18401442192%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome18401433792%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome18401433892%0.099%KU853012.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome18401440792%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds18401451393%0.099%KU365778.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome18371454092%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome18371453892%0.099%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome18371451593%0.099%KU870645.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome18371452993%0.099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome18371444892%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome18371453193%0.099%KU527068.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds18371444192%0.099%KU365779.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18371446692%0.099%KJ776791.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome18311448493%0.099%KX117076.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds18311386889%0.099%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds18311447593%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds18311432092%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds18311431392%0.099%KU955589.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome18311451393%0.099%KU926310.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds18311386489%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds18311428291%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds18311456493%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds18311399690%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds18311389589%0.099%KU501217.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds18311442192%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds18311442192%0.099%KU365777.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome18281448193%0.099%KU820899.2Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds18281442792%0.099%KU729217.2Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome18281430993%0.099%KU681081.3Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds18281389189%0.099%KU501216.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome18241431892%0.099%KU744693.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds18221374989%0.099%KU866423.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds18191347188%0.099%KF993678.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome17841405793%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds17841343389%0.099%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds17831333489%0.099%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome17681383093%0.098%KU681082.3Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome17591158675%0.099%KX101066.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome16631159674%0.099%KX101060.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds16441235589%0.096%HQ234499.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome1627901660%0.096%KX101064.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome15841165283%0.091%KU940227.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds1575358324%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds1566357424%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds1566268916%0.099%KU312315.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds1566386023%0.099%KU312314.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds1566205612%0.099%KJ634273.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds1557384223%0.099%KU312313.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome14691049293%0.093%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome14691048693%0.093%KU955592.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID14671054293%0.093%LC002520.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome14651045993%0.093%KU955591.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome14621051793%0.093%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds14621055193%0.093%KU720415.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome14581048893%0.093%AY632535.2Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds1451233715%0.094%KU740199.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds14111041493%0.092%KF268949.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds13971045093%0.092%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds13971045293%0.092%KF268948.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds13751043692%0.093%KU963573.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1310993689%0.089%KF383115.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1297988289%0.088%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds1292986489%0.088%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1283980889%0.088%KF383117.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1283991689%0.088%DQ859059.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1274997989%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds1274978189%0.088%HQ234500.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds1256956785%0.087%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1256997189%0.087%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds1256996589%0.087%HQ234498.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1252969189%0.087%KF383118.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence1099800384%0.084%KF383120.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome1038747250%0.093%KX101067.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds1018159010%0.099%KU686218.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds101210128%0.088%KF270886.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds9879876%0.099%KU758878.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia02 MapUpdatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia03 Sequence map updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 LOCUS KX101062 10323 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia04, partial genome. ACCESSION KX101062 VERSION KX101062.1 GI:1022831293 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10323) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10323) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10323 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia04" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="Jun-2015" CDS 1..9999 /codon_start=1 /product="polyprotein" /protein_id="ANA85189.1" /db_xref="GI:1022831294" /translation="MRIINARKEKKRRGADTSVGIVGLLLTTAMAAEVTRRGXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMSYECPMLDEGVEPDDVDCWCNT TSTWVVYGTCHHKKGEARRSRRAVTLPSHSNXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQPENL EYRIMLSVHGSQHSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQMAVDMQTLTPVGRLITANPVITE STXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQILIGTLLMWLGLNTKNGS ISLMCLALGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGELNAILEENGVQLTVVVGSVKN PMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDTWR LKRAHLIEMKTCEWPKSHTLWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWCCRECTMPPLSFRAKD GCWYGMEXXXXKEPESNLVRSMVTAGLTDHMDHFSLGVLVILLMVQEGLKKRMTTKII ISTSMAVLVAMILGGFSMSDLAKLAILMGATFAEMNTGGDVAHLALIAAFKVRPALLV SFIFRANWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWLAIRAMVVPRTDN ITLAILAALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAGGFAKADIXMAGPMAAVGLLI VSYVVSGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSXXXXXXXPMREI ILKVVLMTICGMNPIAIPFAAGAWYVYVKTGKRSGALWDVPAPKEVKKGETTDGVYRV MTRRLLGSTQVGVGVMQEGVFHTMWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEI VDLMCHATFTSRLLQPIRVPNYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXGKRVIQLSRKTFETEFQKTKHQEWDXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDEDHAHWLE ARMLLDNIYLQDGLIASLYRPEADKVAAIEGXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDXXX XXXXXXXXXXXXXXALGVMEALGTLPGHMTERFQEAIDNLAVLMRAETGSRPYKAAAA QMPETLETIMLLGLLGTVSLGIFFVLMRNKGIGKMGFGMVTLGASAWLMWLSEIEPAR IACVLIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFITPAVQHAVTTSYNNYSLMAM ATQAGVLFGMGKGMPFYAWDFGVPLLMIGCYSQLTPLTLIXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXGEAGALITAATSTLWEGSPNKYWNSSXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXGGTGETLGEKWKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATG GHAVSRGSAKLRWLVERGYLQPHGKVIDLGCGRGXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTMMETLERLQRRYGGGLVRVPLSRNSTHEMYXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSCAEAPNMKIIGNRIE RIRSEHAETWFFDENHPYRTXXXXXSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTG IAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEE FINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFWALVDKEREHHLRGECQSCVYNMMG KREKKQGEFGKAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXLLYFHRRDLRLMANAICSSVPVDWVPTGRTTXXXXXXXXX XXXXXXXXXXXXXWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAE NIKNTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGSTPGVL" mat_peptide 1..102 /product="capsid peptide" mat_peptide 103..372 /product="propeptide" mat_peptide 373..597 /product="membane protein peptide" mat_peptide 598..2112 /product="envelope protein peptide" mat_peptide 2113..3198 /product="NS1 peptide" mat_peptide 3199..3852 /product="NS2A peptide" mat_peptide 3853..4284 /product="NS2B peptide" mat_peptide 4285..6093 /product="NS3 peptide" mat_peptide 6094..6534 /product="NS4A peptide" mat_peptide 6535..8040 /product="NS4B peptide" mat_peptide 8041..9996 /product="NS5 peptide" gap 117..234 /estimated_length=118 gap 401..983 /estimated_length=583 gap 1048..1621 /estimated_length=574 gap 1704..1986 /estimated_length=283 gap 2080..2320 /estimated_length=241 gap 2534..2726 /estimated_length=193 gap 2809..3038 /estimated_length=230 gap 3465..3566 /estimated_length=102 gap 3644..3886 /estimated_length=243 gap 4385..4885 /estimated_length=501 gap 5075..5370 /estimated_length=296 gap 5446..5668 /estimated_length=223 gap 5793..5904 /estimated_length=112 gap 6417..6675 /estimated_length=259 gap 6866..7110 /estimated_length=245 gap 7188..7290 /estimated_length=103 gap 7543..7852 /estimated_length=310 gap 7948..8082 /estimated_length=135 gap 8700..9582 /estimated_length=883 3'UTR 10000..10323 ORIGIN 1 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 61 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggag [gap 118 bp] Expand Ns 235 accatg 241 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 301 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 361 agatctagaa gagctgtgac gctcccctcc cattccaacc [gap 583 bp] Expand Ns 984 catccag ccagagaatc tggagtaccg gataatgctg 1021 tcagttcatg gctcccagca cagtggg [gap 574 bp] Expand Ns 1622 cagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgct 1681 aaccccgtaa tcactgaaag cac [gap 283 bp] Expand Ns 1987 tcac aaattctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2041 ggatctattt cccttatgtg cttggcctta gggggagtg [gap 241 bp] Expand Ns 2321 tagaagggga gctcaacgca 2341 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2401 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2461 tgggggaaat cgtacttcgt cagagcagca aagacaaata acagctttgt cgtggatggt 2521 gacacactga agg [gap 193 bp] Expand Ns 2727 gaat gacacatgga ggctgaagag ggcccatctg 2761 atcgagatga aaacatgtga atggccaaag tcccacacat tgtggaca [gap 230 bp] Expand Ns 3039 at ggtgctgcag ggagtgcaca 3061 atgcccccac tgtcgttccg ggctaaagat ggctgttggt atggaatgga gannnnnnnn 3121 nggaaagaac cagaaagcaa cttagtaagg tcaatggtga ctgcaggatt aactgatcac 3181 atggatcact tctcccttgg agtgcttgtg attctgctca tggtgcagga agggctgaag 3241 aagagaatga ccacaaagat catcataagc acatcaatgg cagtgctggt agctatgatc 3301 ctgggaggat tttcaatgag tgacctggct aagcttgcaa ttttgatggg tgccaccttc 3361 gcggaaatga acactggagg agatgtagct catctggcgc tgatagcggc attcaaagtc 3421 agaccagcgt tgctggtatc tttcatcttc agagctaatt ggac [gap 102 bp] Expand Ns 3567 ggcc tggttggcaa tacgagcgat ggttgttcca 3601 cgcactgata acatcacctt ggcaatcttg gctgctctga cac [gap 243 bp] Expand Ns 3887 gcgc attggctgga 3901 gggttcgcca aggcagatat agrgatggct gggcccatgg ccgcggtcgg tctgctaatt 3961 gtcagttacg tggtctcagg aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc 4021 acatgggaaa aagatgcgga agtcactgga aacagtcccc ggctcgatgt ggcgctagat 4081 gagagtggtg atttctccnn nnnnnnnnnn nnnnnnnncc ccatgagaga gatcatactc 4141 aaggtggtcc tgatgaccat ctgtggcatg aacccaatag ccataccctt tgcagctgga 4201 gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg ctctatggga tgtgcctgct 4261 cccaaggaag taaaaaaggg ggagaccaca gatggagtgt acagagtaat gactcgtaga 4321 ctgctaggtt caacacaagt tggagtggga gttatgcaag agggggtctt tcacactatg 4381 tggc [gap 501 bp] Expand Ns 4886 gtact gtgatcttag ctccaaccag ggttgtcgct 4921 gctgaaatgg aggaagccct tagagggctt ccagtgcgtt atatgacaac agcagtcaat 4981 gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt 5041 ctactacagc caatcagagt ccccaattat aatc [gap 296 bp] Expand Ns 5371 ggaaaacggg tcatacagct cagcagaaag 5401 acttttgaga cagagttcca gaaaacaaaa catcaagagt gggac [gap 223 bp] Expand Ns 5669 ag actgacgaag accatgcaca ctggcttgaa 5701 gcaagaatgc tccttgacaa tatttacctc caagatggcc tcatagcctc gctctatcga 5761 cctgaggccg acaaagtagc agccattgag gg [gap 112 bp] Expand Ns 5905 gataga agatggtgct ttgatggcac gaccaacaac 5941 accataatgg aagacagtgt gccggcagag gtgtggacca gacacggaga gaaaagagtg 6001 ctcaaaccga ggtggatgga tgccagagtt tgttcagatn nnnnnnnnnn nnnnnnnnnn 6061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gctcttggag tgatggaagc cctgggaaca 6121 ctgccaggac acatgacaga gagattccag gaagccattg acaacctcgc tgtgctcatg 6181 cgggcagaga ctggaagcag gccttacaaa gccgcggcgg cccaaatgcc ggagacccta 6241 gagaccatta tgcttttggg gttgctagga acagtctcgc tgggaatctt tttcgtcttg 6301 atgaggaaca agggcatagg gaagatgggc tttggaatgg tgactcttgg ggccagcgca 6361 tggctcatgt ggctctcgga aattgagcca gccagaattg catgtgtcct cattgt [gap 259 bp] Expand Ns 6676 acttt cattacccca gccgtccaac atgcagtgac macttcatac 6721 aacaactact ccttaatggc gatggccacg caagctggag tgttgtttgg tatgggcaaa 6781 gggatgccat tctacgcatg ggactttgga gtcccgctgc taatgatagg ttgctactca 6841 caattaacac ccctgaccct aatag [gap 245 bp] Expand Ns 7111 ggggaggctg gggctctgat cacagccgca 7141 acttccactt tgtgggaagg ctctccgaac aagtactgga actcctc [gap 103 bp] Expand Ns 7291 ggtggaacag gagagaccct gggagagaaa 7321 tggaaggccc gcttgaacca gatgtcggcc ctggagttct actcctacaa aaagtcaggc 7381 atcaccgagg tgtgcagaga agaggcccgc cgcgccctca aggacggtgt ggcaacggga 7441 ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt tggtggagcg gggatacctg 7501 cagccccatg gaaaggtcat tgatcttgga tgtggcagag gg [gap 310 bp] Expand Ns 7853 gcactatg 7861 atggaaaccc tggagcgact gcagcgtagg tatgggggag gactggtcag agtgccactc 7921 tcccgcaact ctacacatga gatgtac [gap 135 bp] Expand Ns 8083 gtggtaag ctgcgctgaa 8101 gctcccaaca tgaagatcat tggtaaccgc attgaaagga tccgcagtga gcacgcggaa 8161 acgtggttct ttgacgagaa ccacccatat aggacnnnnn nnnnnnnnng aagctatgag 8221 gcccccacac aagggtcagc gtcctctcta gtaaacgggg ttgtcaggct cctgtcaaaa 8281 ccctgggatg tggtgactgg agtcacagga atagccatga ccgacaccac accgtatggt 8341 cagcaaagag ttttcaagga aaaagtggac actagggtgc cagaccccca agaaggcact 8401 cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg 8461 ccacgagtct gtaccaaaga agagttcatc aacaaggttc gtagcaatgc agcactaggg 8521 gcaatatttg aagaggaaaa agagtggaag actgcagtgg aagctgtgaa cgatccaagg 8581 ttctgggctc tagtggacaa ggaaagagag caccacctga gaggagagtg ccagagttgt 8641 gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg aatttggaaa ggccaaggg [gap 883 bp] Expand Ns 9583 ctccttta tttccacaga 9601 agggacctcc gactgatggc caatgccatt tgctcatctg tgccagttga ctgggttcca 9661 actgggagaa ctacctnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 9721 nnnnnnnnnn nnnnnnnnnn gtggattgag gagaacgacc acatggaaga caagacccca 9781 gttacgaaat ggacagacat tccctatttg ggaaaaaggg aagacttgtg gtgtggatct 9841 ctcatagggc acagaccgcg caccacctgg gctgagaaca ttaaaaacac agtcaacatg 9901 gtgcgcagga tcataggtga tgaagaaaag tacatggact acctatccac ccaagttcgc 9961 tacttgggtg aagaagggtc tacacctgga gtgctgtaag caccagnnnn nnnnnnnnnn 10021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntgtgcagc ctgtgacccc cccaggagaa 10081 gctgggaaac caagcctata gtcaggccga gaacgccatg gcacggaaga agccatgctg 10141 cctgtgagcc cctcagagga cactgagtca aaaaacccca cgcgcttgga ggcgcaggat 10201 gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg ggcctgaact ggagatcagc 10261 tgtggatctc cagaagaggg actagtggtt agaggagacc ccccggaaaa cgcaaaacag 10321 cat Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1063785944%0.0100%KX101062.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1063780344%0.098%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome1063780344%0.098%KU940224.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1054775944%0.097%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1054777944%0.097%KU509998.3Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1054773244%0.097%KU926310.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1054762444%0.097%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1054761944%0.097%KU853012.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1054775244%0.097%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1054768744%0.097%KU647676.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1054734141%0.097%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1054734141%0.097%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1054735041%0.097%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1054772944%0.097%KJ776791.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1049773844%0.097%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1049768444%0.097%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1049730741%0.097%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1049773244%0.097%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1049772544%0.097%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1049759944%0.097%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1049773244%0.097%KU870645.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1049774344%0.097%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1049768244%0.097%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1049768244%0.097%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1049724741%0.097%KU866423.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1049731041%0.097%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1049757443%0.097%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1049772744%0.097%KU820899.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1049772944%0.097%KU820897.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1049776344%0.097%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1049737341%0.097%KU761564.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1049772144%0.097%KU707826.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1049770544%0.097%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1049771444%0.097%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1049772744%0.097%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1049770544%0.097%KU365777.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1049772344%0.097%KU321639.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1045774944%0.097%KX087101.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1045761344%0.097%KU955589.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1045769844%0.097%KU729217.2Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1045770044%0.097%KU501215.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome1040773444%0.097%KU497555.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1036761544%0.097%KU681081.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1036713441%0.097%KF993678.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome1032621534%0.096%KX101060.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1031747444%0.097%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1031706941%0.097%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1031702041%0.097%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1012734344%0.096%KU681082.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1012763944%0.096%KU744693.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds9809805%0.096%KT200609.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome940748842%0.092%KU940227.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds904653141%0.092%HQ234499.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome886710842%0.092%KX101064.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome886615836%0.092%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome872608635%0.092%KX101066.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds82012697%0.096%KU740199.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia04 Sequence Map Updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 LOCUS KX101063 10440 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia05, partial genome. ACCESSION KX101063 VERSION KX101063.1 GI:1022831295 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10440) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10440) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10440 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia05" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="Dec-2015" CDS <1..>10103 /codon_start=1 /product="polyprotein" /protein_id="ANA85190.1" /db_xref="GI:1022831296" /translation="FLRFTAIKPSLGLINRWGSVGKKEAMEIIKXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXTMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARR SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXLKCRLKMDKLRLKGVSYSLCNAAFTFTKIPAETLHGTVTV EVQYXXXXXXXXXXAQMAVDMQTLTPVGRLITAXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXQILIGTLLMWLGLNTKNGSISLMCLALGGVXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGPQRLPVPVNELPHG WKAWGKSYFVRAAKTNNSFVVDGDTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWHSEELEIRFEECPGTKXXXX XXXXXXXXXXXXXXXXXXXXXXWCCRECTMPPLSFRAKDGCWYGMEXXXXKEPESNLV RSMVTAGSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVXXXXXXXXXX XXXXXXXXXXATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTXXXXXXXXXX XXXXXXXXXXXXXXXXXLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLM AWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKR SWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGD ITWEKDAEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPF AAGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVMQEG VFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXMLKKKQLTVLDLHPGAGKTXXXXXXXVREAIKTRLR TVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRV PNYNLYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXVWFVPSVRNGNEIAACLTKAGXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDEDHAHWLEARMLLDNIYLQDGLIASLY RPEADKVAAIEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGITYTDRRWCFDGT TNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEP EKQRSPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAW DFGVPLLMIGCYSQLTPLTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAGALITAATST LWEGSPNKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKW KXXXXXXXXXXXXXXXXXXXXXVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGY LQPHGKVIDLGCGRGGWSYYAATIRKVQEVKGXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXCDIGESSSSPEVEEARTLRVXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXPLSRNSTHEMYWVSGAKSNTIKSVSTXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYR TXXXXXSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMYAD DTAGWDTRISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEWKPSTGWDNWEEV PFCSHHFNKLHLKDGRSIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHGKGEWMTTEDMLVVWNRVWIEEND HMEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAXXXXXXXXXXXXIIGDEEKY MDYLSTQVRYLGEEGSTP" mat_peptide 1..219 /product="capsid peptide" mat_peptide 220..489 /product="propeptide" mat_peptide 490..714 /product="membane protein peptide" mat_peptide 715..2229 /product="envelope protein peptide" mat_peptide 2230..3315 /product="NS1 peptide" mat_peptide 3316..3969 /product="NS2A peptide" mat_peptide 3970..4401 /product="NS2B peptide" mat_peptide 4402..6210 /product="NS3 peptide" mat_peptide 6211..6651 /product="NS4A peptide" mat_peptide 6652..8157 /product="NS4B peptide" mat_peptide 8158..10103 /product="NS5 peptide" gap 93..351 /estimated_length=259 gap 486..1577 /estimated_length=1092 gap 1798..2104 /estimated_length=307 gap 2197..2518 /estimated_length=322 gap 2651..3024 /estimated_length=374 gap 4326..4459 /estimated_length=134 gap 4642..4894 /estimated_length=253 gap 5202..5426 /estimated_length=225 gap 5493..5785 /estimated_length=293 gap 6157..6422 /estimated_length=266 gap 6595..6792 /estimated_length=198 gap 6983..7227 /estimated_length=245 gap 7711..7835 /estimated_length=125 gap 7896..8031 /estimated_length=136 gap 8458..8679 /estimated_length=222 gap 8817..8991 /estimated_length=175 gap 9039..9478 /estimated_length=440 gap 9585..9798 /estimated_length=214 3'UTR <10131..10440 ORIGIN 1 tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg 61 gggaaaaaag aggctatgga aataataaag aa [gap 259 bp] Expand Ns 352 accatgagc 361 tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaac 421 acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga 481 tctag [gap 1092 bp] Expand Ns 1578 ctt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc 1621 gtgtcatact ccttgtgtaa cgcagcgttc acattcacca agatcccggc tgaaacactg 1681 cacgggacag tcacagtgga ggtacagtac nnnnnnnnnn nnnnnnnnnn nnnnnnnnca 1741 gctcagatgg cggtggacat gcaaactctg accccagttg ggaggttgat aaccgct [gap 307 bp] Expand Ns 2105 cacaaa ttctcattgg aacgttgctg atgtggttgg gtctgaacac aaagaatgga 2161 tctatttccc ttatgtgctt ggccttaggg ggagtg [gap 322 bp] Expand Ns 2519 gg 2521 agaggtccac agagattgcc cgtgcctgtg aacgagctgc cccacggctg gaaggcttgg 2581 gggaaatcgt acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac 2641 acactgaagg [gap 374 bp] Expand Ns 3025 ccatgg cacagtgaag agcttgaaat tcggtttgag 3061 gaatgcccag gcactaaggn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnatggt gctgcaggga gtgcacaatg 3181 cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagan nnnnnnnngg 3241 aaagaaccag aaagcaactt agtaaggtca atggtgactg caggatcaac tgatcacatg 3301 gatcacttct cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag 3361 agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtann nnnnnnnnnn 3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnngtgc caccttcgcg 3481 gaaatgaaca ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga 3541 ccagcgttgc tggtatcttt catcttcaga gctaattgga cnnnnnnnnn nnnnnnnnnn 3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3661 nnnctcatca atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc 3721 actgataaca tcaccttggc aatcttggct gctctgacac cactggcccg gggcacactg 3781 cttatggcgt ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag 3841 ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg 3901 aggctggtcg accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg 3961 agctggcccc ctagcgaagt actcacagct gttggcctga tatgcgcatt ggctggaggg 4021 ttcgccaagg cagatataga gatggctggg cccatggccg cggtcggtct gctaattgtc 4081 agttacgtgg tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca 4141 tgggaaaaag atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag 4201 agtggtgatt tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag 4261 gtggtcctga tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg 4321 tggta [gap 134 bp] Expand Ns 4460 g agtgggagtt atgcaagagg gggtctttca cactatgtgg 4501 cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga 4561 gatgtcaagc aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac 4621 gggcacagcg aggtgcagct c [gap 253 bp] Expand Ns 4895 cgatgc tgaagaagaa gcagctaact 4921 gtcttagact tgcatcctgg agctgggaaa accnnnnnnn nnnnnnnnnn nntagtccgt 4981 gaagccataa aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct 5041 gaaatggagg aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc 5101 acccactctg gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgtcta 5161 ctacagccaa tcagagtccc caattataat ctgtatatta t [gap 225 bp] Expand Ns 5427 agtt tggtttgttc caagcgtgag gaacggcaat 5461 gagatcgcag cttgtctgac aaaggctgga aa [gap 293 bp] Expand Ns 5786 agact gacgaagacc atgcacactg gcttgaagca 5821 agaatgctcc ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct 5881 gaggccgaca aagtagcagc cattgagggn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 6001 nnnnnnggaa taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc 6061 ataatggaag acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc 6121 aaaccgaggt ggatggatgc cagagtttgt tcagat [gap 266 bp] Expand Ns 6423 gaacaagg gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg 6481 ctcatgtggc tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgttc 6541 ctattgctgg tggtgctcat acctgagcca gaaaagcaaa gatctcccca ggac [gap 198 bp] Expand Ns 6793 actttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac 6841 aactactcct taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg 6901 atgccattct acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa 6961 ttaacacccc tgaccctaat ag [gap 245 bp] Expand Ns 7228 ggg gaggctgggg ctctgatcac agccgcaact 7261 tccactttgt gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg 7321 tgtaacattt ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga 7381 aacgctggct tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg 7441 aaggnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7501 nnnnnggtgt gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc 7561 catgctgtgt cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag 7621 ccccatggaa aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc 7681 accatccgca aagttcaaga agtgaaagga [gap 125 bp] Expand Ns 7836 gtgtg acataggtga gtcatcatct 7861 agtcctgaag tggaagaagc acggacgctc agagt [gap 136 bp] Expand Ns 8032 ccactctcc 8041 cgcaactcta cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt 8101 gtgtccaccn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng tggtaagctg cgctgaagct 8221 cccaacatga agatcattgg taaccgcatt gaaaggatcc gcagtgagca cgcggaaacg 8281 tggttctttg acgagaacca cccatatagg acnnnnnnnn nnnnnngaag ctatgaggcc 8341 cccacacaag ggtcagcgtc ctctctagta aacggggttg tcaggctcct gtcaaaaccc 8401 tgggatgtgg tgactggagt cacaggaata gccatgaccg acaccacacc gtatggt [gap 222 bp] Expand Ns 8680 g ctgtgaacga tccaaggttc 8701 tgggctctag tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg 8761 tacaacatga tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caaggg [gap 175 bp] Expand Ns 8992 aggatgtat 9001 gcagatgaca ctgctggctg ggacacccgc atcagcag [gap 440 bp] Expand Ns 9479 ac 9481 acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc gttttgctcc 9541 caccacttca acaagctcca tctcaaggac gggaggtcca ttgt [gap 214 bp] Expand Ns 9799 at ccatggaaag ggagaatgga tgaccactga agacatgctt 9841 gtggtgtgga acagagtgtg gattgaggag aacgaccaca tggaagacaa gaccccagtt 9901 acgaaatgga cagacattcc ctatttggga aaaagggaag acttgtggtg tggatctctc 9961 atagggcaca gaccgcgcac cacctgggcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 10021 nnnnggatca taggtgatga agaaaagtac atggactacc tatccaccca agttcgctac 10081 ttgggtgaag aagggtctac accnnnnnnn nnnnnnnnnn nnnnnnnnnn gttgtcaggc 10141 ctgctagtca gccacagctt ggggaaagct gtgcagcctg tgaccccccc aggagaagct 10201 gggaaaccaa gcctatagtc aggccgagaa cgccatggca cggaagaagc catgctgcct 10261 gtgagcccct cagaggacac tgagtcaaaa aaccccacgc gcttggaggc gcaggatggg 10321 aaaagaaggt ggcgaccttc cccacccttc aatctggggc ctgaactgga gatcagctgt 10381 ggatctccag aagagggact agtggttaga ggagaccccc cggaaaacgc aaaacagcat Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1195802444%0.0100%KX101063.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1189796844%0.099%KU940228.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1186792744%0.099%KX087101.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome1186796544%0.099%KU940224.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1186795244%0.099%KU926310.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1186796544%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1186790244%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1186795044%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1186742941%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1186742541%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1186788444%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1186788944%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1186789444%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1186788544%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1186746942%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1186792344%0.099%KJ776791.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1180793044%0.099%KX117076.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1180794544%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1180796644%0.099%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1180793044%0.099%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1180791144%0.099%KU991811.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1180781044%0.099%KU955589.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1180791244%0.099%KU870645.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1180739341%0.099%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1180779944%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1180779744%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1180793044%0.099%KU820899.2Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1180790944%0.099%KU729217.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1180780144%0.099%KU744693.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1180792144%0.099%KU321639.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1177790344%0.099%KX087102.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1177795644%0.099%KU926309.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1177740741%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1177775544%0.099%KU740184.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1177794844%0.099%KU820897.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1177746942%0.099%KU761564.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds1177197411%0.099%KU740199.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome1177795644%0.099%KU497555.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1177790944%0.099%KU365778.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1171740241%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1171778444%0.099%KU955590.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1171789344%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1171789344%0.099%KU922923.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1171789644%0.099%KU647676.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1153782444%0.099%KU681081.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1135723641%0.098%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1133718641%0.098%JN860885.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1131768544%0.098%KU955593.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome1130774343%0.097%KU940227.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1117753244%0.097%KU681082.3Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1090712841%0.097%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1072661841%0.096%HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia05 Seq MapUpdatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 LOCUS KX101064 10735 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia11, partial genome. ACCESSION KX101064 VERSION KX101064.1 GI:1022831297 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10735) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10735) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10735 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia11" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="Apr-2015" 5'UTR 1..>79 gap 80..378 /estimated_length=299 CDS <379..10378 /codon_start=2 /product="polyprotein" /protein_id="ANA85191.1" /db_xref="GI:1022831298" /translation="LRIINARKEKKRRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMY LDRNDAGEAISFPTTLGMNKCYIXXXXXXXXXXXTMSYECPMLDEGVEPDDVDCWCNT TSTWVVYGTCHHKKGEARRSRRAVTLPSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILLIAPAYSIRCIGVSNRDFVEGMSGGT WVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXVNDTGHETDENRAKVEITXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKCRLKMDKLRLKGVSYSLCN AAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITE STENSKMMLELDPPFGDSYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILIGTLLMWLGLNTKNGS VSLMCLALGGVLIFLSTAVSADVGCSVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPD SPRRLAAAVKQAWEDGICGISSVSRMENIMWRSVEGELNAILEENGVQLTVVVGSVKN PMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKGKEAVHSDLGYWIESEKNDTWR LKRAHLIEMKTCEWPKSHTLWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWCCRECTMPPLSFRAKD GCWYGMEXXXXKEPESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQEGLKKRMTTKII ISTSMAVLVAMILGGFSMSDLAKLAILMGATFAEMNTGGDVAHLALIAAFKVRPALLV SFIFRANWTXXXSMLLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVXXXXXXXXX XXXXXXVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI VSYVVSGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSXXXXXXXPMREI ILKVVLMTICGMNPIAIPFAAGAWXXXXXXXXXXXXXXDVPAPKEVKKGETTDGVYRV MTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPW KLDAAWDGHSEVQLLAVPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEI VDLMCHATFTSRLLQPIRVPNYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXGKRVIQLSRKTFETEFQKTKHQEWDXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYGGGCAETDEDHAHWLE ARMLLDNIYLQDGLIASLYRPEADKVAAIEGXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAA LKSFKEFAAGKRGAAFGVMEALGTXXXXXXXXXXXXXXXXXVLMRAETGSRPYKAAAA QMPETLETIMLLGLLGTVSLGIFFVLMRNKGIGKMGFGMVTLGASAWLMWLSEIEPAR IACVLIVVFLLLVVLIPEPEKQRSPQDNQMAIIIMVAVGLLGLITAXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFITPAVQHAVTTSYNNYSLMAM ATQAGVLFGMGKGMPFYAWDFGVPLLMIGCYSQLTPLTLIVAIILLVAHYMYLXXXXX AAAARAAQKRTAAGIMKNPVVDGIVVTDIDTMTIDPQVEKKMGQVLLIAXXXXXXXXX XXXXXXGEAGALITAATSTLWEGSPNKYWNSSXXXXXXXXXXXXXXXXXXXIYTVTRN AGLVKRRGGGTGETLGEKWKARLNXXXXXXXXXXXXXXXXXVCREEARRALKDGVATG GHAVSRGSAKLRWLVERGYLQPHGKVIDLGCGRGGWSYYAATIRKVQEVKGXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTMMETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGA KSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDVNLGSGXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXTWAYHGSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTG IAMTDTTPYGQQRVFXXKVDTRVPDPQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEE FINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFWALVDKEREHHLRGECQSCVYNMMG KREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQR LGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYT YQNKVVKVLRPAEKGKTVMDIISRQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKV RKDTQEWKPSTGWDNWEEVPFCSHHFNXXXXXXXXXXXXXXRHQDELIGRARVSPGAG WSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTGRTTWSIHGKGEW MTTEDMLVVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAE NIKNTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGSTPGVL" mat_peptide 380..481 /product="capsid peptide" mat_peptide 482..751 /product="propeptide" mat_peptide 752..976 /product="membane protein peptide" mat_peptide 977..2491 /product="envelope protein peptide" mat_peptide 2492..3577 /product="NS1 peptide" mat_peptide 3578..4231 /product="NS2A peptide" mat_peptide 4232..4663 /product="NS2B peptide" mat_peptide 4664..6472 /product="NS3 peptide" mat_peptide 6473..6913 /product="NS4A peptide" mat_peptide 6914..8419 /product="NS4B peptide" mat_peptide 8420..10375 /product="NS5 peptide" gap 777..947 /estimated_length=171 gap 1044..1430 /estimated_length=387 gap 1486..1839 /estimated_length=354 gap 2139..2366 /estimated_length=228 gap 2913..3046 /estimated_length=134 gap 3188..3417 /estimated_length=230 gap 4923..5234 /estimated_length=312 gap 5454..5749 /estimated_length=296 gap 5825..6025 /estimated_length=201 gap 6172..6283 /estimated_length=112 gap 6915..7054 /estimated_length=140 gap 7973..8231 /estimated_length=259 gap 8454..8570 /estimated_length=117 gap 9465..9722 /estimated_length=258 3'UTR 10379..10735 ORIGIN 1 gttgttgatc tgtgtgaatc agactgcgac agttcgagtt tgaagcgaaa gctagcaaca 61 gtatcaacag gttttattt [gap 299 bp] Expand Ns 379 gc tgagaataat caatgctagg aaggagaaga agagacgagg 421 cgcagatact agtgtcggaa ttgttggcct cctgctgacc acagctatgg cagcggaggt 481 cactagacgt gggagtgcat actatatgta cttggacaga aacgatgctg gggaggccat 541 atcttttcca accacattgg ggatgaataa gtgttatata cnnnnnnnnn nnnnnnnnnn 601 nnnnnnnnnn nncaccatga gctatgaatg ccctatgctg gatgaggggg tggaaccaga 661 tgacgtcgat tgttggtgca acacgacgtc aacttgggtt gtgtacggaa cctgccatca 721 caaaaaaggt gaagcacgga gatctagaag agctgtgacg ctcccctccc attcca [gap 171 bp] Expand Ns 948 tga tactgctgat 961 tgccccggca tacagcatca ggtgcatagg agtcagcaat agggactttg tggaaggtat 1021 gtcaggtggg acttgggttg atg [gap 387 bp] Expand Ns 1431 tcgttaatga 1441 cacaggacat gaaactgatg agaatagagc gaaggttgag ataac [gap 354 bp] Expand Ns 1840 c ttgaaatgtc gcctgaaaat 1861 ggataaactt agattgaagg gcgtgtcata ctccttgtgt aacgcagcgt tcacattcac 1921 caagatcccg gctgaaacac tgcacgggac agtcacagtg gaggtacagt acgcagggac 1981 tgatggacct tgcaaggttc cagctcagat ggcggtggac atgcaaactc tgaccccagt 2041 tgggaggttg ataaccgcta accccgtaat cactgaaagc actgagaact ctaagatgat 2101 gctggaactt gatccaccat ttggggactc ctacattg [gap 228 bp] Expand Ns 2367 caca aattctcatt ggaacgttgc tgatgtggtt 2401 gggtctgaac acaaagaatg gatctgtttc ccttatgtgc ttggccttag ggggagtgtt 2461 gatcttctta tccacagccg tctctgctga tgtggggtgc tcggtggact tctcaaagaa 2521 ggagacgaga tgcggtacag gggtgttcgt ctataacgac gttgaagcct ggagggacag 2581 gtacaagtac catcctgact ccccccgtag attggcagca gcagtcaagc aagcctggga 2641 agatggtatc tgcgggatct cctctgtttc aagaatggaa aacatcatgt ggagatcagt 2701 agaaggggag ctcaacgcaa tcctggaaga gaatggagtt caactgacgg tcgttgtggg 2761 atctgtaaaa aaccccatgt ggagaggtcc acagagattg cccgtgcctg tgaacgagct 2821 gccccacggc tggaaggctt gggggaaatc gtacttcgtc agagcagcaa agacaaataa 2881 cagctttgtc gtggatggtg acacactgaa gg [gap 134 bp] Expand Ns 3047 gctg ttaagggaaa 3061 ggaggctgta cacagtgatc taggctactg gattgagagt gagaagaatg acacatggag 3121 gctgaagagg gcccatctga tcgagatgaa aacatgtgaa tggccaaagt cccacacatt 3181 gtggaca [gap 230 bp] Expand Ns 3418 atg 3421 gtgctgcagg gagtgcacaa tgcccccact gtcgttccgg gctaaagatg gctgttggta 3481 tggaatggag annnnnnnnn ggaaagaacc agaaagcaac ttagtaaggt caatggtgac 3541 tgcaggatca actgatcaca tggatcactt ctcccttgga gtgcttgtga ttctgctcat 3601 ggtgcaggaa gggctgaaga agagaatgac cacaaagatc atcataagca catcaatggc 3661 agtgctggta gctatgatcc tgggaggatt ttcaatgagt gacctggcta agcttgcaat 3721 tttgatgggt gccaccttcg cggaaatgaa cactggagga gatgtagctc atctggcgct 3781 gatagcggca ttcaaagtca gaccagcgtt gctggtatct ttcatcttca gagctaattg 3841 gacnnnnnnn naaagcatgc tgctggcctt ggcctcgtgt cttttgcaaa ctgcgatctc 3901 cgccttggaa ggcgacctga tggttctcat caatggtttt gctttggcct ggttggcaat 3961 acgagcgatg gttgttccac gcactgataa catcaccttg gcaatcttgg ctgctctgac 4021 accactggcc cggggcacac tgcttgtggc gtggagagca ggccttgcta cttgcggggg 4081 gtttatgctc ctctctctga agggaaaagg cagtgtgaag aagaacttac catttgtcnn 4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nacgtggtgg gactgctgtt 4201 gctcacaagg agtgggaagc ggagctggcc ccctagcgaa gtactcacag ctgttggcct 4261 gatatgcgca ttggctggag ggttcgccaa ggcagatata gagatggctg ggcccatggc 4321 cgcggtcggt ctgctaattg tcagttacgt ggtctcagga aagagtgtgg acatgtacat 4381 tgaaagagca ggtgacatca catgggaaaa agatgcggaa gtcactggaa acagtccccg 4441 gctcgatgtg gcgctagatg agagtggtga tttctccnnn nnnnnnnnnn nnnnnnnccc 4501 catgagagag atcatactca aggtggtcct gatgaccatc tgtggcatga acccaatagc 4561 catacccttt gcagctggag cgtggtannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4621 nnnnnnggat gtgcctgctc ccaaggaagt aaaaaagggg gagaccacag atggagtgta 4681 cagagtaatg actcgtagac tgctaggttc aacacaagtt ggagtgggag ttatgcaaga 4741 gggggtcttt cacactatgt ggcacgtcac aaaaggatcc gcgctgagaa gcggtgaagg 4801 gagacttgat ccatactggg gagatgtcaa gcaggatctg gtgtcatact gtggtccatg 4861 gaagctagat gccgcctggg acgggcacag cgaggtgcag ctcttggccg tgccccccgg 4921 ag [gap 312 bp] Expand Ns 5235 tagtcc gtgaagccat aaaaacaaga ctccgtactg tgatcttagc 5281 tccaaccagg gttgtcgctg ctgaaatgga ggaagccctt agagggcttc cagtgcgtta 5341 tatgacaaca gcagtcaatg tcacccactc tggaacagaa atcgtcgact taatgtgcca 5401 tgccaccttc acttcacgtc tactacagcc aatcagagtc cccaattata atc [gap 296 bp] Expand Ns 5750 g gaaaacgggt 5761 catacagctc agcagaaaga cttttgagac agagttccag aaaacaaaac atcaagagtg 5821 ggac [gap 201 bp] Expand Ns 6026 ctgta tggaggtggg tgcgcagaga ctgacgaaga 6061 ccatgcacac tggcttgaag caagaatgct ccttgacaat atttacctcc aagatggcct 6121 catagcctcg ctctatcgac ctgaggccga caaagtagca gccattgagg g [gap 112 bp] Expand Ns 6284 gatagaa gatggtgctt 6301 tgatggcacg accaacaaca ccataatgga agacagtgtg ccggcagagg tgtggaccag 6361 acacggagag aaaagagtgc tcaaaccgag gtggatggat gccagagttt gttcagatca 6421 tgcggccctg aagtcattca aggagtttgc cgctgggaaa agaggagcgg cttttggagt 6481 gatggaagcc ctgggaacac nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 6541 nnnnnnnnnn gtgctcatgc gggcagagac tggaagcagg ccttacaaag ccgcggcggc 6601 ccaaatgccg gagaccctag agaccattat gcttttgggg ttgctaggaa cagtctcgct 6661 gggaatcttt ttcgtcttga tgaggaacaa gggcataggg aagatgggct ttggaatggt 6721 gactcttggg gccagcgcat ggctcatgtg gctctcggaa attgagccag ccagaattgc 6781 atgtgtcctc attgttgtgt tcctattgct ggtggtgctc atacctgagc cagaaaagca 6841 aagatctccc caggacaacc aaatggcaat catcatcatg gtagcagtag gtcttctggg 6901 cttgattacc gcca [gap 140 bp] Expand Ns 7055 actttc attaccccag ccgtccaaca 7081 tgcagtgacc acttcataca acaactactc cttaatggcg atggccacgc aagctggagt 7141 gttgtttggt atgggcaaag ggatgccatt ctacgcatgg gactttggag tcccgctgct 7201 aatgataggt tgctactcac aattaacacc cctgacccta atagtggcca tcattttgct 7261 cgtggcgcac tacatgtact tgnnnnnnnn nnnnnnggca gcagctgcgc gtgctgccca 7321 gaagagaacg gcagctggca tcatgaagaa ccctgttgtg gatggaatag tggtgactga 7381 cattgacaca atgacaattg acccccaagt ggagaaaaag atgggacagg tgctactcat 7441 agcnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng gggaggctgg 7501 ggctctgatc acagccgcaa cttccacttt gtgggaaggc tctccgaaca agtactggaa 7561 ctcctcnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7621 nnnaatctac acagtaacaa gaaacgctgg cttggtcaag agacgtgggg gtggaacagg 7681 agagaccctg ggagagaaat ggaaggcccg cttgaaccnn nnnnnnnnnn nnnnnnnnnn 7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt gtgcagagaa gaggcccgcc gcgccctcaa 7801 ggacggtgtg gcaacgggag gccatgctgt gtcccgagga agtgcaaagc tgagatggtt 7861 ggtggagcgg ggatacctgc agccccatgg aaaggtcatt gatcttggat gtggcagagg 7921 gggctggagt tactacgccg ccaccatccg caaagttcaa gaagtgaaag ga [gap 259 bp] Expand Ns 8232 gcactatga tggaaaccct ggagcgactg cagcgtaggt atgggggagg 8281 actggtcaga gtgccactct cccgcaactc tacacatgag atgtactggg tctctggagc 8341 gaaaagcaac accataaaaa gtgtgtccac cacgagccag ctcctcttgg ggcgcatgga 8401 cgggcctagg aggccagtga aatatgagga ggatgtgaat ctcggctctg gca [gap 117 bp] Expand Ns 8571 ggacatgggc 8581 ttaccatgga agctatgagg cccccacaca agggtcagcg tcctctctag taaacggggt 8641 tgtcaggctc ctgtcaaaac cctgggatgt ggtgactgga gtcacaggaa tagccatgac 8701 cgacaccaca ccgtatggtc agcaaagagt tttcannnnn aaagtggaca ctagggtgcc 8761 agacccccaa gaaggcactc gtcaggttat gagcatggtc tcttcctggt tgtggaaaga 8821 gctaggcaaa cacaaacggc cacgagtctg taccaaagaa gagttcatca acaaggttcg 8881 tagcaatgca gcattagggg caatatttga agaggaaaaa gagtggaaga ctgcagtgga 8941 agctgtgaac gatccaaggt tctgggctct agtggacaag gaaagagagc accacctgag 9001 aggagagtgc cagagttgtg tgtacaacat gatgggaaaa agagaaaaga aacaagggga 9061 atttggaaag gccaagggca gccgcgccat ctggtatatg tggctagggg ctagatttct 9121 agagttcgaa gcccttggat tcttgaacga ggatcactgg atggggagag agaactcagg 9181 aggtggtgtt gaagggctgg gattacaaag actcggatat gtcctagaag agatgagtcg 9241 cataccagga ggaaggatgt atgcagatga cactgctggc tgggacaccc gcatcagcag 9301 gtttgatctg gagaatgaag ctctaatcac caaccaaatg gagaaagggc acagggcctt 9361 ggcattggcc ataatcaagt acacatacca aaacaaagtg gtaaaggtcc ttagaccagc 9421 tgaaaaaggg aaaacagtta tggacattat ttcgagacaa gacc [gap 258 bp] Expand Ns 9723 tgggaaaa gttaggaagg acacacaaga gtggaaaccc tcaactggat gggacaactg 9781 ggaagaagtt ccgttttgct cccaccactt caacaannnn nnnnnnnnnn nnnnnnnnnn 9841 nnnnnnnnnn nnnngccgcc accaagatga actgattggc cgggcccgcg tatctccagg 9901 ggcgggatgg agcatccggg agactgcttg cctagcaaaa tcatatgcgc aaatgtggca 9961 gctcctttat ttccacagaa gggacctccg actgatggcc aatgccattt gctcatctgt 10021 gccagttgac tgggttccaa ctgggagaac tacctggtca atccatggaa agggagaatg 10081 gatgaccact gaagacatgc ttgtggtgtg gaacagagtg tggattgagg agaacgacca 10141 catggaagac aagaccccag ttacgaaatg gacagacatt ccctatttgg gaaaaaggga 10201 agacttgtgg tgtggatctc tcatagggca cagaccgcgc accacctggg ctgagaacat 10261 taaaaacaca gtcaacatgg tgcgcaggat cataggtgat gaagaaaagt acatggacta 10321 cctatccacc caagttcgct acttgggtga agaagggtct acacctggag tgctgtaagc 10381 accagtctta atgttgtcag gcctgctagt cagccacagc ttggggaaag ctgtgcagcc 10441 tgtgaccccc ccaggagaag ctgggaaacc aagcctatag tcaggccgag aacgccatgg 10501 cacggaagaa gccatgctgc ctgtgagccc ctcagaggac actgagtcaa aaaaccccac 10561 gcgcttggag gcgcaggatg ggaaaagaag gtggcgacct tccccaccct tcaatctggg 10621 gcctgaactg gagatcagct gtggatctcc agaagaggga ctagtggtta gaggagaccc 10681 cccggaaaac gcaaaacagc atattgacgc tgggaaagac cagagactcc atgag Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22861170066%0.0100%KX101064.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome22861156866%0.092%KU940228.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome22801119162%0.094%KU940227.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome22801141965%0.092%KU940224.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds22801157766%0.092%KU729218.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome22771157466%0.092%KU509998.3Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome22771155466%0.092%KU926310.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome22771141766%0.092%KU707826.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds22771142266%0.092%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds22771143566%0.092%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds22771142266%0.092%KU365777.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome22771146266%0.092%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome22711155066%0.092%KX051563.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome22711136665%0.092%KU853013.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds22711141366%0.092%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome22711156766%0.092%KU527068.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds22711089663%0.092%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds22711133465%0.092%KJ776791.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome22691136365%0.092%KU853012.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome22681149466%0.092%KX087101.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds22681142066%0.092%KU991811.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome22681154166%0.092%KU497555.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds22681079562%0.092%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds22681079562%0.092%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome22681145366%0.092%KU501215.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome22621153066%0.092%KX117076.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds22621119265%0.092%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome22621152966%0.092%KU870645.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome22621156366%0.092%KU926309.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds22621151466%0.092%KU365778.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds22591074162%0.092%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds22591144066%0.092%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds22591121265%0.092%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds22591067162%0.092%KU866423.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds22591075262%0.092%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds22591124065%0.092%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome22591152066%0.092%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds22591088963%0.092%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome22591133866%0.092%KU744693.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome22531143166%0.092%KX087102.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome22531130965%0.092%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome22531130465%0.092%KU922923.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds22531154566%0.092%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds22531131865%0.092%KU647676.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome22231134366%0.091%KU681081.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds22081047262%0.091%KF993678.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome21861114866%0.091%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds21861037562%0.091%JN860885.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome21631099766%0.090%KU681082.3Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds21361027962%0.090%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds2048957362%0.089%HQ234499.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1627901451%0.096%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome1617888949%0.096%KX101066.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia11 Sequence map updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 LOCUS KX101065 10348 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia15, partial genome. ACCESSION KX101065 VERSION KX101065.1 GI:1022831299 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10348) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10348) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10348 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia15" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="Jan-2016" CDS 1..>9872 /codon_start=1 /product="polyprotein" /protein_id="ANA85192.1" /db_xref="GI:1022831300" /translation="MRIINARKEKKRRGADTSVGIVGLLLTTAMAAEVTRRGXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMSYECPMLDEGVEPDDVDCWCNT TSTWVVYGTCHHKKGEARRSRRAVTLPSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKCRLKMDKLRLKGVSYSLCN AAFTFTKIPAETLHGTVTVEVQYXXXXXXXXXXAQMAVDMQTLTPVGRLITANPVITE STXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILIGTLLMWLGLNTKNGS ISLMCLALGGVXXXXXXXXXXXXGCSVDFSKKETRXGTGVFVYNDVEAWRDRYKYHPD SPRRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGELNAILEENGVQLTVVVGSVKN PMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWH SEELEIRFEECPGTKXXXXXXXXXXXXXXXXXXXXXXXXXXWCCRECTMPPLSFRAKD GCWYGMEXXXXXXXXXXXXXXXXXXXXXXXXDHFSLGVLVILLMVQEGLKKRMTTKXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATFAEMNTGGDVAHLALIAAFKVRPAXXX XXXXXXXXXXXXSMLLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN ITLAILAALTXXXXXXXLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVXXXXXXXXX XXXXXXVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI VSYVVSGKSVDMYIERAGDITWEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMREI ILKVVLMTICGMNPIAIPFAAGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRV MTRRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPW KLDAAWDGHSEVQLLAVPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEI VDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFM TATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIA ACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISEMGANFKADRVIXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYGGGCAETDEDHAHWLE ARMLLDNIYLQDGLIASLYRPEADKVAAIEGXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXDRRWCFDGTTNNTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAA LKSFKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGIGKMGFGMVTLGASAWLMWLSEIEPAR IACVLIVVFLLLVVLIPEPEKQRSPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFITPAVQHAVTTSYNNYSLMAM ATQAGVLFGMGKGMPFYAWDFGVPLLMIGCYSQLTXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIYTVTRN AGLVKRRGGGTGETLGEKWKXXXXXXXXXXXXXXXXXXXXXVCREEARRALKDGVATG GHAVSRGSAKLRWLVERGYLQPHGKVIDLGCGRGGWSYYAATIRKVQEVKGXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSRNSTHEMYWVSGA KSNTIKSVSTTSQLLLGRMDGPRRPVKYEEDXXXXXXXXXXXXXXXXXXMKIIGNRIE RIRSEHAETWFFDENHPYXXXXXXXXXXXXXXXXXXXXXXXXVRLLSKPWDVVTGVTG IAMTDTTPYGQQRVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTAVEAVNDPRFWALVDKEREHHLRGECQSCVYNMMG KREKKQGEFGKAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXLLYFHRRDLRLMANAICSSVPVDWVPTGRTTXXIHGKGEW MTTEDMLVVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWA" mat_peptide 1..102 /product="capsid peptide" mat_peptide 103..372 /product="propeptide" mat_peptide 373..597 /product="membane protein peptide" mat_peptide 598..2112 /product="envelope protein peptide" mat_peptide 2113..3198 /product="NS1 peptide" mat_peptide 3199..3852 /product="NS2A peptide" mat_peptide 3853..4284 /product="NS2B peptide" mat_peptide 4285..6093 /product="NS3 peptide" mat_peptide 6094..6534 /product="NS4A peptide" mat_peptide 6535..8040 /product="NS4B peptide" mat_peptide 8041..9872 /product="NS5 peptide" gap 117..234 /estimated_length=118 gap 398..1460 /estimated_length=1063 gap 1704..1987 /estimated_length=284 gap 2534..2907 /estimated_length=374 gap 4544..4847 /estimated_length=304 gap 5507..5646 /estimated_length=140 gap 5793..5904 /estimated_length=112 gap 6067..6305 /estimated_length=239 gap 6478..6675 /estimated_length=198 gap 6851..7244 /estimated_length=394 gap 7594..7914 /estimated_length=321 gap 8357..8548 /estimated_length=192 gap 8701..8832 /estimated_length=132 gap 8997..9582 /estimated_length=586 gap 9873..10067 /estimated_length=195 3'UTR <10068..10348 ORIGIN 1 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 61 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggag [gap 118 bp] Expand Ns 235 accatg 241 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 301 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 361 agatctagaa gagctgtgac gctcccctcc cattcca [gap 1063 bp] Expand Ns 1461 cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1501 ggcgtgtcat actccttgtg taacgcagcg ttcacattca ccaagatccc ggctgaaaca 1561 ctgcacggga cagtcacagt ggaggtacag tacnnnnnnn nnnnnnnnnn nnnnnnnnnn 1621 ncagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgct 1681 aaccccgtaa tcactgaaag cac [gap 284 bp] Expand Ns 1988 cac aaattctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2041 ggatctattt cccttatgtg cttggcctta gggggagtgn nnnnnnnnnn nnnnnnnnnn 2101 nnnnnnnnnn nnnnggggtg ctcggtggac ttctcaaaga aggagacgag atgmggtaca 2161 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2221 tccccccgta gattggcagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng tagaagggga gctcaacgca 2341 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2401 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2461 tgggggaaat cgtacttcgt cagagcagca aagacaaata acagctttgt cgtggatggt 2521 gacacactga agg [gap 374 bp] Expand Ns 2908 cca tggcacagtg aagagcttga aattcggttt 2941 gaggaatgcc caggcactaa ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnat ggtgctgcag ggagtgcaca 3061 atgcccccac tgtcgttccg ggctaaagat ggctgttggt atggaatgga gannnnnnnn 3121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3181 nnngatcact tctcccttgg agtgcttgtg attctgctca tggtgcagga agggctgaag 3241 aagagaatga ccacaaagan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng tgccaccttc 3361 gcggaaatga acactggagg agatgtagct catctggcgc tgatagcggc attcaaagtc 3421 agaccagcgt nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnaaagcatg 3481 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 3541 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 3601 cgcactgata acatcacctt ggcaatcttg gctgctctga cacnnnnnnn nnnnnnnnnn 3661 nngcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg 3721 aagggaaaag gcagtgtgaa gaagaactta ccatttgtcn nnnnnnnnnn nnnnnnnnnn 3781 nnnnnnnnnn nnnnnnnnnn nnacgtggtg ggactgctgt tgctcacaag gagtgggaag 3841 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga 3901 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 3961 gtcagttacg tggtctcagg aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc 4021 acatgggaaa aagannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ccatgagaga gatcatactc 4141 aaggtggtcc tgatgaccat ctgtggcatg aacccaatag ccataccctt tgcagctgga 4201 gcgtggtann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn acagagtaat gactcgtaga 4321 ctgctaggtt caacacaagt tggagtggga gttatgcaag agggggtctt tcacactatg 4381 tggcacgtca caaaaggatc cgcgctgaga agcggtgaag ggagacttga tccatactgg 4441 ggagatgtca agcaggatct ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg 4501 gacgggcaca gcgaggtgca gctcttggcc gtgccccccg gag [gap 304 bp] Expand Ns 4848 tcc tgaaatagtc 4861 cgtgaagcca taaaaacaag actccgtact gtgatcttag ctccaaccag ggttgtcgct 4921 gctgaaatgg aggaagccct tagagggctt ccagtgcgtt atatgacaac agcagtcaat 4981 gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt 5041 ctactacagc caatcagagt ccccaattat aatctgtata ttatggatga ggcccacttc 5101 acagatccct caagtatagc agcaagagga tacatttcaa caagggttga gatgggcgag 5161 gcggctgcca tcttcatgac cgccacgcca ccaggaaccc gtgacgcatt tccggactcc 5221 aactcaccaa ttatggacac cgaagtggaa gtcccagaga gagcctggag ctcaggcttt 5281 gattgggtga cggatcattc tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc 5341 aatgagatcg cagcttgtct gacaaaggct ggaaaacggg tcatacagct cagcagaaag 5401 acttttgaga cagagttcca gaaaacaaaa catcaagagt gggactttgt cgtgacaact 5461 gacatttcag agatgggcgc caactttaaa gctgaccgtg tcatag [gap 140 bp] Expand Ns 5647 ctgt atggaggtgg gtgcgcagag actgacgaag accatgcaca ctggcttgaa 5701 gcaagaatgc tccttgacaa tatttacctc caagatggcc tcatagcctc gctctatcga 5761 cctgaggccg acaaagtagc agccattgag gg [gap 112 bp] Expand Ns 5905 gataga agatggtgct ttgatggcac gaccaacaac 5941 accataatgg aagacagtgt gccggcagag gtgtggacca gacacggaga gaaaagagtg 6001 ctcaaaccga ggtggatgga tgccagagtt tgttcagatc atgcggccct gaagtcattc 6061 aaggag [gap 239 bp] Expand Ns 6306 gaaca agggcatagg gaagatgggc tttggaatgg tgactcttgg ggccagcgca 6361 tggctcatgt ggctctcgga aattgagcca gccagaattg catgtgtcct cattgttgtg 6421 ttcctattgc tggtggtgct catacctgag ccagaaaagc aaagatctcc ccaggac [gap 198 bp] Expand Ns 6676 acttt cattacccca gccgtccaac atgcagtgac cacttcatac 6721 aacaactact ccttaatggc gatggccacg caagctggag tgttgtttgg tatgggcaaa 6781 gggatgccat tctacgcatg ggactttgga gtcccgctgc taatgatagg ttgctactca 6841 caattaacac [gap 394 bp] Expand Ns 7245 aatcta cacagtaaca 7261 agaaacgctg gcttggtcaa gagacgtggg ggtggaacag gagagaccct gggagagaaa 7321 tggaaggnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7381 nnnnnnnngg tgtgcagaga agaggcccgc cgcgccctca aggacggtgt ggcaacggga 7441 ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt tggtggagcg gggatacctg 7501 cagccccatg gaaaggtcat tgatcttgga tgtggcagag ggggctggag ttactacgcc 7561 gccaccatcc gcaaagttca agaagtgaaa gga [gap 321 bp] Expand Ns 7915 ccactc 7921 tcccgcaact ctacacatga gatgtactgg gtctctggag cgaaaagcaa caccataaaa 7981 agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg acgggcctag gaggccagtg 8041 aaatatgagg aggatgnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8101 nnnnnnnnca tgaagatcat tggtaaccgc attgaaagga tccgcagtga gcacgcggaa 8161 acgtggttct ttgacgagaa ccacccatat agnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntgtcaggct cctgtcaaaa 8281 ccctgggatg tggtgactgg agtcacagga atagccatga ccgacaccac accgtatggt 8341 cagcaaagag ttttca [gap 192 bp] Expand Ns 8549 ag actgcagtgg aagctgtgaa cgatccaagg 8581 ttctgggctc tagtggacaa ggaaagagag caccacctga gaggagagtg ccagagttgt 8641 gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg aatttggaaa ggccaagggc [gap 132 bp] Expand Ns 8833 ctcggata tgtcctagaa gagatgagtc gcataccagg aggaaggatg 8881 tatgcagatg acactgctgg ctgggacacc cgcatcagca ggtttgatct ggagaatgaa 8941 gctctaatca ccaaccaaat ggagaaaggg cacagggcct tggcattggc cataat [gap 586 bp] Expand Ns 9583 ctccttta tttccacaga 9601 agggacctcc gactgatggc caatgccatt tgctcatctg tgccagttga ctgggttcca 9661 actgggagaa ctacctnnnn natccatgga aagggagaat ggatgaccac tgaagacatg 9721 cttgtggtgt ggaacagagt gtggattgag gagaacgacc acatggaaga caagacccca 9781 gttacgaaat ggacagacat tccctatttg ggaaaaaggg aagacttgtg gtgtggatct 9841 ctcatagggc acagaccgcg caccacctgg gc [gap 195 bp] Expand Ns 10068 ccc cccaggagaa 10081 gctgggaaac caagcctata gtcaggccga gaacgccatg gcacggaaga agccatgctg 10141 cctgtgagcc cctcagagga cactgagtca aaaaacccca cgcgcttgga ggcgcaggat 10201 gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg ggcctgaact ggagatcagc 10261 tgtggatctc cagaagaggg actagtggtt agaggagacc ccccggaaaa cgcaaaacag 10321 catattgacg ctgggaaaga ccagagac Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1189836449%0.0100%KX101065.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1189826848%0.0100%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome1189826348%0.0100%KU940224.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1184819848%0.099%KX087102.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1184820548%0.099%KU991811.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1184818548%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1184818548%0.099%KU922923.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1184828848%0.099%KU820897.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1184829948%0.099%KU729218.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1184829048%0.099%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1184819148%0.099%KU647676.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1184823448%0.099%KJ776791.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1180827249%0.099%KX087101.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1180829048%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1180831548%0.099%KU509998.3Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1180825948%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1180829549%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1180829349%0.099%KU926309.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1180820348%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome1180828449%0.099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1180819848%0.099%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1180778246%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1180778246%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1180818348%0.099%KU501215.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1180819848%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1180827049%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1180821948%0.099%KU321639.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1175828849%0.099%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1175828449%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1175811748%0.099%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1175776246%0.099%KU866423.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1175774446%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1175806147%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1175828449%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1175774946%0.099%KU761564.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1171775346%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1171808848%0.099%KU955590.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1171819248%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1171818948%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1171777646%0.099%KU312312.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1166810448%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1166810448%0.099%KU853012.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1157811148%0.099%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1153756046%0.099%KF993678.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1148803448%0.099%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1148816249%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1148753546%0.099%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1130744646%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1103787349%0.097%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1045693646%0.095%HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahai15 Seq Map Update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 LOCUS KX101066 10632 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia01, partial genome. ACCESSION KX101066 VERSION KX101066.1 GI:1022831301 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10632) AUTHORS Naccache,S.N., Theze,J., Sardi,S.I., Somasekar,S., Greninger,A.L., Bandeira,A.C., Campos,G.S., Tauro,L.B., Faria,N.R., Pybus,O.G. and Chiu,C.Y. TITLE Discovery of a persistent Zika virus lineage in Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10632) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10632 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia01" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="May-2015" 5'UTR 1..3 CDS 4..10275 /codon_start=1 /product="polyprotein" /protein_id="ANA85193.1" /db_xref="GI:1022831302" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINXXXXXXKKEAMEIIKKFKKDLAAMLRIINARXXXX XXXXXXXXXXXXLLLTTAMAAEVTRRGSAYYMYLDRNDAGXXXXXXXXXXMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTXXXXXXXTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCNAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIXWRSVEGELXAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGREAVHSDLGYWIESEKNDTWRLKRAXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELEIRFEECPGTKXHVEETCGTR GPSLRSTTASGRVIEEWCCXXXXXXPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRAXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKGGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVXXXXXXXXXXXXXXXXXXXXXPMPVTHASAAQR RGRIGRNPNKXGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIXXXAVLMRAETGSRPYKAAAAQMPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPXXXHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKTGITEVCREEARRALKDXXXXXXXXXXXXXXXXXXXXXXXXLQPHGK VIDLGCGRGGWSYYAATIRKVQEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXIGESSSSPEVEEARTLRVLSMVGDXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREKKQGEFGKAKGSRAIWYMWLGA RFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVMKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 4..378 /product="capsid peptide" mat_peptide 379..648 /product="propeptide" mat_peptide 649..873 /product="membane protein peptide" mat_peptide 874..2388 /product="envelope protein peptide" mat_peptide 2389..3474 /product="NS1 peptide" mat_peptide 3475..4128 /product="NS2A peptide" mat_peptide 4129..4560 /product="NS2B peptide" mat_peptide 4561..6369 /product="NS3 peptide" mat_peptide 6370..6810 /product="NS4A peptide" mat_peptide 6811..8316 /product="NS4B peptide" mat_peptide 8317..10272 /product="NS5 peptide" gap 703..916 /estimated_length=214 gap 3030..3193 /estimated_length=164 gap 3732..3892 /estimated_length=161 gap 4049..4169 /estimated_length=121 gap 4330..4539 /estimated_length=210 gap 5356..5595 /estimated_length=240 gap 7360..7553 /estimated_length=194 gap 7866..7999 /estimated_length=134 gap 8074..8187 /estimated_length=114 gap 8745..8937 /estimated_length=193 gap 9020..9277 /estimated_length=258 gap 9403..9647 /estimated_length=245 3'UTR 10276..10632 ORIGIN 1 gtcatgaaaa acccaaaaaa gaaatccgga ggattccgga ttgtcaatat gctaaaacgc 61 ggagtagccc gtgtgagccc ctttgggggc ttgaagaggc tgccagccgg acttctgctg 121 ggtcatgggc ccatcaggat ggtcttggcg attctagcct ttttgagatt cacggcaatc 181 aagccatcac tgggtctcat caatagnnnn nnnnnnnnnn ngaaaaaaga ggctatggaa 241 ataataaaga agttcaagaa agatctggct gccatgctga gaataatcaa tgctaggaan 301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnctcct gctgaccaca 361 gctatggcag cggaggtcac tagacgtggg agtgcatact atatgtactt ggacagaaac 421 gatgctgggg nnnnnnnnnn nnnnnnnnnn nnnnnnnnna tgaataagtg ttatatacag 481 atcatggatc ttggacacat gtgtgatgcc accatgagct atgaatgccc tatgctggat 541 gagggggtgg aaccagatga cgtcgattgt tggtgcaaca cgacgtnnnn nnnnnnnnnn 601 nnnngaacct gccatcacaa aaaaggtgaa gcacggagat ctagaagagc tgtgacgctc 661 ccctcccatt ccactaggaa gctgcaaacg cggtcgcaaa cc [gap 214 bp] Expand Ns 917 tgtc aggtgggact tgggttgatg ttgtcttgga acatggaggt 961 tgtgtcaccg taatggcaca ggacaaaccg actgtcgaca tagagctggt tacaacaaca 1021 gtcagcaaca tggcggaggt aagatcctac tgctatgagg catcaatatc agacatggct 1081 tcggacagcc gctgcccaac acaaggtgaa gcctaccttg acaagcaatc agacactcaa 1141 tatgtctgca aaagaacgtt agtggacaga ggctggggaa atggatgtnn nnnnnnnnnn 1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1261 nnnnnnnnnn nnnnnnngga gtaccggata atgctgtcag ttcatggctc ccagcacagt 1321 gggatgatcg ttaatgacac aggacatgaa actgatgaga atagagcgaa ggttgagata 1381 acgcccaatt caccaagagc cgaagccacc ctggggggtt ttggaagcct aggacttgat 1441 tgtgaaccga ggacaggcct tgacttttca gatttgtatt acttgactat gaataacaag 1501 cactggttgg ttcacaagga gtggttccac gacattccat taccttggca cgctggggca 1561 gacaccggaa ctccacactg gaacaacaaa gaagcactgg tagagttcaa ggacgcacat 1621 gccaaaaggc aaactgtcgt ggttctaggg agtcaagaag gagcagttca cacggccctt 1681 gctggagctc tagaggctga gatggatggt gcaaagggaa ggctgtcctc tggccacttg 1741 aaatgtcgcc tgaaaatgga taaacttaga ttgaagggcg tgtcatactc cttgtgtaac 1801 gcagcgttca cattcaccaa gatcccggct gaaacactgc acgggacagt cacagtggag 1861 gtacagtacg cagggactga tggaccttgc aaggttccag ctcagatggc ggtggacatg 1921 caaactctga ccccagttgg gaggttgata accgctaacc ccgtaatcac tgaaagcact 1981 gagaactcta agatgatgct ggaacttgat ccaccatttg gggactccta cattgtcata 2041 ggagtcgggg agaagaagat cacccaccac tggcacagga gtggcagcac cattggaaaa 2101 gcatttgaag ccactgtgag aggtgccaag agaatggcag tcttgggaga cacagcctgg 2161 gactttggat cagttggagg cgctctcaac tcattgggca agggcatcca tcaaattttt 2221 ggagcagctt tcaaatcatt gtttggagga atgtcctggt tctcacaaat tctcattgga 2281 acgttgctga tgtggttggg tctgaacaca aagaatggat ctatttccct tatgtgcttg 2341 gccttagggg gagtgttgat cttcttatcc acagccgtct ctgctgatgt ggggtgctcg 2401 gtggacttct caaagaagga gacgagatgc ggtacagggg tgttcgtcta taacgacgtt 2461 gaagcctgga gggacaggta caagtaccat cctgactccc cccgtagatt ggcagcagca 2521 gtcaagcaag cctgggaaga tggtatctgc gggatctcct ctgtttcaag aatggaaaac 2581 atcawgtgga gatcagtaga aggggagctc aamgcaatcc tggaagagaa tggagttcaa 2641 ctgacggtcg ttgtgggatc tgtaaaaaac cccatgtgga gaggtccaca gagattgccc 2701 gtgcctgtga acgagctgcc ccacggctgg aaggcttggg ggaaatcgta cttcgtcaga 2761 gcagcaaaga caaataacag ctttgtcgtg gatggtgaca cactgaagga atgcccactc 2821 aaacatagag catggaacag ctttcttgtg gaggatcatg ggttcggggt atttcacact 2881 agtgtctggc tcaaggttag agaagattat tcattagagt gtgatccagc cgttattgga 2941 acagctgtta agggaaggga ggctgtacac agtgatctag gctactggat tgagagtgag 3001 aagaatgaca catggaggct gaagagggc [gap 164 bp] Expand Ns 3194 gtgaaga gcttgaaatt cggtttgagg aatgcccagg cactaagrtc 3241 cacgtggagg aaacatgtgg aacaagagga ccatctctga gatcaaccac tgcaagcgga 3301 agggtgatcg aggaatggtg ctgcagnnnn nnnnnnnnnn ccccactgtc gttccgggct 3361 aaagatggct gttggtatgg aatggagata aggcccagga aagaaccaga aagcaactta 3421 gtaaggtcaa tggtgactgc aggatcaact gatcacatgg atcacttctc ccttggagtg 3481 cttgtgatyc tgctcatggt gcaggaaggg ctgaagaaga gaatgaccac aaagatcatc 3541 ataagcacat caatggcagt gctggtagct atgatcctgg gaggattttc aatgagtgac 3601 ctggctaagc ttgcaatttt gatgggtgcc accttcgcgg aaatgaacac tggaggagat 3661 gtagctcatc tggcgctgat agcggcattc aaagtcagac cagcgttgct ggtatctttc 3721 atcttcagag c [gap 161 bp] Expand Ns 3893 ccttggca 3901 atcttggctg ctctgacacc actggcccgg ggcacactgc ttgtggcgtg gagagcaggc 3961 cttgctactt gcggggggtt tatgctcctc tctctgaagg gaaaaggcag tgtgaagaag 4021 aacttaccat ttgtcatggc cctgggac [gap 121 bp] Expand Ns 4170 g gctggagggt tcgccaaggc agatatagag 4201 atggctgggc ccatggccgc ggtcggtctg ctaattgtca gttacgtggt ctcaggaaag 4261 agcgtggaca tgtacattga aagagcaggt gacatcacat gggaaaaaga tgcggaagtc 4321 actggaaac [gap 210 bp] Expand Ns 4540 a aggaagtaaa aaagggggag 4561 accacagatg gagtgtacag agtaatgact cgtagactgc taggttcaac acaagttgga 4621 gtgggagtta tgcaagaggg ggtctttcac actatgtggc acgtcacaaa aggatccgcg 4681 ctgagaagcg gtgaagggag acttgatcca tactggggag atgtcaagca ggatctggtg 4741 tcatactgtg gtccatggaa gctagatgcc gcctgggacg ggcacagcga ggtgcagctc 4801 ttggccgtgc cccccggaga gagagcgagg aacatccaga ctctgcccgg aatatttaag 4861 acaaagggtg gggacattgg agcggttgcg ctggattacc cagcaggaac ttcaggatct 4921 ccaatcctag acaagtgtgg gagagtgata ggactttatg gcaatggggt cgtgatcaaa 4981 aatgggagtt atgttagtgc catcacccaa gggaggaggg aggaagagac tcctgttgag 5041 tgcttcgagc cttcgatgct gaagaagaag cagctaactg tcttagactt gcatcctgga 5101 gctgggaaaa ccaggagagt tcttcctgaa atagtccgtg aagccataaa aacaagactc 5161 cgtactgtga tcttagctcc aaccagggtt gtcgctgctg aaatggagga agcccttaga 5221 gggcttccag tgcgttatat gacaacagca gtcaatgtca cccactctgg aacagaaatc 5281 gtcgacttaa tgtgccatgc caccttcact tcacgtctac tacagccaat cagagtcccc 5341 aattataatc tgtat [gap 240 bp] Expand Ns 5596 gttcc aagcgtgagg aacggcaatg agatcgcagc ttgtctgaca 5641 aaggctggaa aacgggtcat acagctcagc agaaagactt ttgagacaga gttccagaaa 5701 acaaaacatc aagagtggga ctttgtcgtg acaactgaca tttcagagat gggcgccaac 5761 tttaaagctg accgtgtcat nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5821 nnnnnnnnnn nnnnnnnnnn acccatgcct gtcacacatg ccagcgctgc ccagaggagg 5881 gggcgcatag gcaggaatcc caacaaamct ggagatgagt atctgtatgg aggtgggtgc 5941 gcagagactg acgaagacca tgcacactgg cttgaagcaa gaatgctcct tgacaatatt 6001 tacctccaag atggcctcat agcctcgctc tatcgacctg aggccgacaa agtagcagcc 6061 attgagggag agttcaagct taggacggag caaaggaaga cctttgtgga actcatgaaa 6121 agaggagatc ttcctgtttg gctggcctat caggttgcat ctgccggaat aacctacaca 6181 gatagaagat ggtgctttga tggcacgacc aacaacacca taatggaaga cagtgtgccg 6241 gcagaggtgt ggaccagaca cggagagaaa agagtgctca aaccgaggtg gatggacgcc 6301 agagtttgtt cagatcatgc ggccctgaag tcattcaagg agtttgccgc tgggaaaaga 6361 ggggcggctt ttggagtgat ggaagccctg ggaacactgc caggacacat gacagagaga 6421 ttccaggaag ccattgannn nnncgctgtg ctcatgcggg cagagactgg aagcaggcct 6481 tacaaagccg cggcggccca aatgccggag accctagaga ccattatgct tttggggttg 6541 ctaggaacag tctcgctggg aatctttttc gtcttgatga ggaacaaggg catagggaag 6601 atgggctttg gaatggtgac tcttggggcc agcgcatggc tcatgtggct ctcggaaatt 6661 gagccagcca gaattgcatg tgtcctcatt gttgtgttcc tattgctggt ggtgctcata 6721 cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncg gatggttgga gagaacaaag 6841 agtgacctaa gccatctaat gggaaggaga gaggaggggg caaccatagg attctcaatg 6901 gacattgacc tacggccagc ctcagcttgg gccatctatg ctgccttgac aactttcatt 6961 accccnnnnn nnnnncatgc agtgaccact tcatacaaca actactcctt aatggcgatg 7021 gccacgcaag ctggagtgtt gtttggtatg ggcaaaggga tgccattcta cgcatgggac 7081 tttggagtcc cgctgctaat gataggttgc tactcacaat taacacccct gaccctaata 7141 gtggccatca ttttgctcgt ggcgcactac atgtacttga tcccagggct gcaggcagca 7201 gctgcgcgtg ctgcccagaa gagaacggca gctggcatca tgaagaaccc tgttgtggat 7261 ggaatagtgg tgactgacat tgacacaatg acaattgacc cccaagtgga gaaaaagatg 7321 ggacaggtgc tactcatagc agtagccgtc tccagcgcc [gap 194 bp] Expand Ns 7554 caagaga 7561 cgtgggggtg gaacaggaga gaccctggga gagaaatgga aggcccgctt gaaccagatg 7621 tcggccctgg agttctactc ctacaaaaag acaggcatca ccgaggtgtg cagagaagag 7681 gcccgccgcg ccctcaagga cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncctgcagc cccatggaaa ggtcattgat 7801 cttggatgtg gcagaggggg ctggagttac tacgccgcca ccatccgcaa agttcaagaa 7861 gtgaa [gap 134 bp] Expand Ns 8000 a cataggtgag tcatcatcta gtcctgaagt ggaagaagca 8041 cggacgctca gagttctctc catggtgggg gat [gap 114 bp] Expand Ns 8188 gtg ccactctccc gcaactctac acatgagatg 8221 tactgggtct ctggagcgaa aagcaacacc ataaaaagtg tgtccaccac gagccagctc 8281 ctcttggggc gcatggacgg gcctaggagg ccagtgaaat atgaggagga tgtgaatctc 8341 ggctctggca cgcgggctgt ggtaagctgc gctgaagctc ccaacatgaa gatcattggt 8401 aaccgcattg aaaggatccg cagtgagcac gcggaaacgt ggttctttga cgagaaccac 8461 ccatatagga catgggctta ccatggaagc tatgnnnnnn nnnnnnnnnn nnnnnnnnnn 8521 ncnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8581 nnaggaatag ccatgaccga caccacaccg tatggtcagc aaagagtttt caaggaaaaa 8641 gtggacacta gggtgccaga cccccaagaa ggcactcgtc aggttatgag catggtctct 8701 tcctggttgt ggaaagagct aggcaaacac aaacggccac gagt [gap 193 bp] Expand Ns 8938 aga 8941 gaaaagaaac aaggggaatt tggaaaggcc aagggcagcc gcgccatctg gtatatgtgg 9001 ctaggggcta gatttctag [gap 258 bp] Expand Ns 9278 aca cataccaaaa caaagtggta 9301 aaggtcctta gaccagctga aaaagggaaa acagttatgg acattatttc gagacaagac 9361 caaaggggga gcggacaagt tgtcacttac gctcttaaca ca [gap 245 bp] Expand Ns 9648 gtg gaaaccctca 9661 actggatggg acaactggga agaagttccg ttttgctccc accacttcaa caagctccat 9721 ctcaaggacg ggaggtccat tgtggttccc tgccgccacc aagatgaact gattggccgg 9781 gcccgcgtct ctccaggggc gggatggagc atccgggaga ctgcttgcct agcaaaatca 9841 tatgcgcaaa tgtggcagct cctttatttc cacagaaggg acctccgact gatggccaat 9901 gccatttgtt catctgtgcc agttgactgg gttccaactg ggagaactac ctggtcaatc 9961 catggaaagg gagaatggat gaccactgaa gacatgcttg tggtgtggaa cagagtgtgg 10021 attgaggaga acgaccacat ggaagacaag accccagtta tgaaatggac agacattccc 10081 tatttgggaa aaagggaaga cttgtggtgt ggatctctca tagggcacag accgcgcacc 10141 acctgggctg agaacattaa aaacacagtc aacatggtgc gcaggatcat aggtgatgaa 10201 gaaaagtaca tggactacct atccacccaa gttcgctact tgggtgaaga agggtctaca 10261 cctggagtac tgtaagcacc aatcttaatg ttgtcaggcc tgctagtcag ccacagcttg 10321 gggaaagctg tgcagcctgt gaccccccca ggagaagctg ggaaaccaag cctatagtca 10381 ggccgagaac gccatggcac ggaagaagcc atgctgcctg tgagcccctc agaggacact 10441 gagtcaaaaa accccacgcg cttggaggcg caggatggga aaagaaggtg gcgaccttcc 10501 ccacccttca atctggggcc tgaactggag atcagctgtg gatctccaga agagggacta 10561 gtggttagag gagacccccc ggaaaacgca aaacagcata ttgacgctgg gaaagaccag 10621 agactccatg ag Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31551390075%0.0100%KX101066.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome31461373974%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome31391364374%0.099%KU940224.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome31281378675%0.099%KU509998.3Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome31281367674%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds31221379075%0.099%KU729218.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds31221366274%0.099%KJ776791.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds31191366074%0.099%KU991811.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome31191372875%0.099%KU870645.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome31191375475%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome31191365474%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome31191365474%0.099%KU922923.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome31191365474%0.099%KU707826.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3119406121%0.099%KU646828.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds31191366574%0.099%KU647676.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds31191309271%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds31191309271%0.099%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds31191364274%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds31191364574%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds31191374175%0.099%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds31191363374%0.099%KU365777.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome31131371275%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome31131364774%0.099%KX087102.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome31131375575%0.099%KX051563.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds31131369875%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds31131353074%0.099%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds31131296471%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome31131370775%0.099%KU820899.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds31131374875%0.099%KU820897.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3113405021%0.099%KU646827.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome31131362774%0.099%KU501215.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds31121364574%0.099%KU729217.2Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome31101373275%0.099%KX087101.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds31101307071%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds31101352674%0.099%KU955590.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds31101307771%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds31101350373%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds31101321672%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome31101374175%0.099%KU497555.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome31081355274%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome31081355274%0.099%KU853012.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome31041375075%0.099%KU527068.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds31041320272%0.099%KU312312.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome31011372575%0.099%KU926310.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome30651352175%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome30501348574%0.099%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds30381257670%0.098%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds30251255471%0.098%EU545988.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome30201329975%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds30201266271%0.098%JN860885.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome29871309775%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds27871173071%0.095%HQ234499.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds2677316916%0.099%KU312315.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds2677404723%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds2664401923%0.099%KU312313.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia01 Seq Map Updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 LOCUS KX101067 10566 bp RNA linear VRL 26-APR-2016 DEFINITION Zika virus isolate Bahia12, partial genome. ACCESSION KX101067 VERSION KX101067.1 GI:1022831303 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10566) AUTHORS Naccache,S.N., Somasekar,S., Sardi,S.I., Bandeira,A.C., Campos,G.S. and Chiu,C.Y. TITLE Direct Submission JOURNAL Submitted (22-APR-2016) Laboratory Medicine, University of California, San Francisco, 185 Berry Street, #0134, San Francisco, CA 94107, USA COMMENT ##Assembly-Data-START## Assembly Method :: SURP+ v. 1.0 2016; Geneious v. 6.1.8 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10566 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Bahia12" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="May-2015" CDS <1..10209 /codon_start=1 /product="polyprotein" /protein_id="ANA85194.1" /db_xref="GI:1022831304" /translation="ARVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGL INRWGSVGKKEAMEIIKXXXXXXXXXLRIINARKEKKRRGADTSVGIVGLLLTTAMAA EVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIXXXXXXXXXXXXXSYECPMLDEG VEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVTLPSHSXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHETDENRAKVEITPNSPRAEATLG GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQMAVDMQTLTPV GRLITANPVITESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILIGTL LMWLGLNTKNGSISLMCLALGGVXXXXXXXXXXXXXXXXXFSKKETRCGTGVFVYNDV EAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSRMENIMWRSVEGELNAILEENG VQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECDPAVIGTAVKGKEAVHSDLG YWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGIXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXPWHSEELEIRFEECPGTKXXXXXXXXXXXXXXXXXXXXXXXXXXWCCRE CTMPPLSFRAKDGCWYGMEXXXXXXXESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQ EGLKKRMTTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATFAEMNTGGDVAHLAL IAAFKVRPALLVSFIFRANWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWL AIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGLATCGXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIE MAGPMAAVGLLIVSYVVSGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGD VKQDLVSYCGPWKLDAAWDGHSEVQLLAVPXXXXXXXXXXXXXXXXXKGGDIGAVALD YPAGTSGSPILDKCGRVIGLYGNGVVIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGXXXXXXT TAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIXXXXXXXXXXXXXXXXXXXX RVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVW FVPSVRNGNEIAACLTKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLMRA ETGSRPYKAAAAQMPETLETIMLLGLLGTVSLGIFFVLMRNKGIGKMGFGMVTLGASA WLMWLSEIEPARIACVLIVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXGMGKGMPFYAWDFGVPLLMIGCYSQLTXXXXXXXXXXX XXXXXXXXXXXXAAAARAAQKRTAAGIMKNPVVDGIVVTDIDTMTIDPQVXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYWNSSTATSLCNIFRGSYL AGASLIYTVTRNAGLVKRRGGGTGETLGXXXXXXXXXXXXXXXXXXXXXXXXXVCREE ARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPHGKVIDLGXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGVDVFHMAAEPCDTLLCDIGESSSSPE VEEARTLRVLSMVXXXXXXXXXXXXXXXXXXXXSTMMETLERLQRRYGGGLVRVPLSR NSTHEMYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLGSGTRAVVSCAE APNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHGSYEAPTQGSASSLVNGVVRLL SKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMSMVSSWLWKELG KHKRPRVCTKEEFINKVRSXXXXXXXXXXXXXXXXXXXAVNDPRFWALVDKEREHHLR GECQSCVYNMMGKREKKQGEFGKAKGXXXXXXXXLGARFLEFEALGFLNEDHWMGREN SGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKG HRALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGS LIGHRPXXXXXXXXXXXXXXXXXIIGDEEKYMDYLSTQVRYLGEEGSTPGVL" mat_peptide 1..312 /product="capsid peptide" mat_peptide 313..582 /product="propeptide" mat_peptide 583..807 /product="membane protein peptide" mat_peptide 808..2322 /product="envelope protein peptide" mat_peptide 2323..3408 /product="NS1 peptide" mat_peptide 3409..4062 /product="NS2A peptide" mat_peptide 4063..4494 /product="NS2B peptide" mat_peptide 4495..6303 /product="NS3 peptide" mat_peptide 6304..6744 /product="NS4A peptide" mat_peptide 6745..8250 /product="NS4B peptide" mat_peptide 8251..10206 /product="NS5 peptide" gap 608..1276 /estimated_length=669 gap 1353..1831 /estimated_length=479 gap 1914..2197 /estimated_length=284 gap 2744..2850 /estimated_length=107 gap 3675..3776 /estimated_length=102 gap 3910..4012 /estimated_length=103 gap 4199..4308 /estimated_length=110 gap 4419..4552 /estimated_length=134 gap 4917..5057 /estimated_length=141 gap 5586..6381 /estimated_length=796 gap 6631..6978 /estimated_length=348 gap 7244..7382 /estimated_length=139 gap 7741..7870 /estimated_length=130 gap 8158..8268 /estimated_length=111 gap 9196..9891 /estimated_length=696 3'UTR 10210..10566 ORIGIN 1 gcccgtgtga gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat 61 gggcccatca ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca 121 tcactgggtc tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata 181 aagannnnnn nnnnnnnnnn nnnnnnnnng ctgagaataa tcaatgctag gaaggagaag 241 aagagacgag gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg 301 gcagcggagg tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct 361 ggggaggcca tatcttttcc aaccacattg gggatgaata agtgttatat acnnnnnnnn 421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng agctatgaat gccctatgct ggatgagggg 481 gtggaaccag atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga 541 acctgccatc acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc 601 cattcca [gap 669 bp] Expand Ns 1277 gaca tgaaactgat gagaatagag cgaaggttga gataacgccc 1321 aattcaccaa gagccgaagc caccctgggg gg [gap 479 bp] Expand Ns 1832 cagctcaga tggcggtgga catgcaaact 1861 ctgaccccag ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cac [gap 284 bp] Expand Ns 2198 cac aaattctcat tggaacgttg 2221 ctgatgtggt tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta 2281 gggggagtgn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnac 2341 ttctcaaaga aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc 2401 tggagggaca ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag 2461 caagcctggg aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg 2521 tggagatcag tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg 2581 gtcgttgtgg gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct 2641 gtgaacgagc tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca 2701 aagacaaata acagctttgt cgtggatggt gacacactga agg [gap 107 bp] Expand Ns 2851 gagtgtgatc cagccgttat tggaacagct 2881 gttaagggaa aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat 2941 gacacatgga ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag 3001 tcccacacat tgtggacaga tggaatagnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncca 3121 tggcacagtg aagagcttga aattcggttt gaggaatgcc caggcactaa ggnnnnnnnn 3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3241 nnnnnnnnat ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat 3301 ggctgttggt atggaatgga gannnnnnnn nnnnnnnnnn nagaaagcaa cttagtaagg 3361 tcaatggtga ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg 3421 attctgctca tggtgcagga agggctgaag aagagaatga ccacaaagan nnnnnnnnnn 3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3541 nnnnnnnnnn nnnnnnnnng tgccaccttc gcggaaatga acactggagg agatgtagct 3601 catctggcgc tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc 3661 agagctaatt ggac [gap 102 bp] Expand Ns 3777 ggcc 3781 tggttggcaa tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcttg 3841 gctgctctga caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct 3901 acttgcggg [gap 103 bp] Expand Ns 4013 acgtggtg 4021 ggactgctgt tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca 4081 gctgttggcc tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct 4141 gggcccatgg ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtg [gap 110 bp] Expand Ns 4309 ct ggtggaggat 4321 gacggtcccc ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg 4381 aacccaatag ccataccctt tgcagctgga gcgtggta [gap 134 bp] Expand Ns 4553 gagtggga 4561 gttatgcaag agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga 4621 agcggtgaag ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac 4681 tgtggtccat ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc 4741 gtgcccnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncaaag 4801 ggtggggaca ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc 4861 ctagacaagt gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaa [gap 141 bp] Expand Ns 5058 tcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact 5101 gtgatcttag ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagaggnnnn 5161 nnnnnnnnnn nnnngacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac 5221 ttaatgtgcc atgccacctt cacttcacgt ctactacagc caatcagagt ccccaattat 5281 aatctgtata ttatnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5341 nnnnnnnnnn nnagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca 5401 ccaggaaccc gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa 5461 gtcccagaga gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca 5521 gtttggtttg ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct 5581 ggaaa [gap 796 bp] Expand Ns 6382 gtgctcatg cgggcagaga ctggaagcag gccttacaaa 6421 gccgcggcgg cccaaatgcc ggagacccta gagaccatta tgcttttggg gttgctagga 6481 acagtctcgc tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc 6541 tttggaatgg tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca 6601 gccagaattg catgtgtcct cattgttgtg [gap 348 bp] Expand Ns 6979 gg tatgggcaaa gggatgccat tctacgcatg ggactttgga 7021 gtcccgctgc taatgatagg ttgctactca caattaacac nnnnnnnnnn nnnnnnnnnn 7081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnggc agcagctgcg 7141 cgtgctgccc agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata 7201 gtggtgactg acattgacac aatgacaatt gacccccaag tgg [gap 139 bp] Expand Ns 7383 gtactgga actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg 7441 gctggagctt ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg 7501 ggtggaacag gagagaccct gggagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 7561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnngg tgtgcagaga agaggcccgc 7621 cgcgccctca aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag 7681 ctgagatggt tggtggagcg gggatacctg cagccccatg gaaaggtcat tgatcttgga [gap 130 bp] Expand Ns 7871 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac 7921 acgttgctgt gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg 7981 ctcagagttc tctccatggt nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8041 nnnnnnnnnn nnnnnnnnnn nagcactatg atggaaaccc tggagcgact gcagcgtagg 8101 tatgggggag gactggtcag agtgccactc tcccgcaact ctacacatga gatgtac [gap 111 bp] Expand Ns 8269 aa tctcggctct 8281 ggcacgcggg ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc 8341 attgaaagga tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat 8401 aggacatggg cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta 8461 gtaaacgggg ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga 8521 atagccatga ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac 8581 actagggtgc cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg 8641 ttgtggaaag agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc 8701 aacaaggttc gtagcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 8761 nnnnnnnnnn nagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag 8821 caccacctga gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag 8881 aaacaagggg aatttggaaa ggccaagggn nnnnnnnnnn nnnnnnnnnn nnnnctaggg 8941 gctagatttc tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga 9001 gagaactcag gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa 9061 gagatgagtc gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc 9121 cgcatcagca ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg 9181 cacagggcct tggca [gap 696 bp] Expand Ns 9892 atccatgga 9901 aagggagaat ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag 9961 gagaacgacc acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg 10021 ggaaaaaggg aagacttgtg gtgtggatct ctcatagggc acagaccgnn nnnnnnnnnn 10081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnngga tcataggtga tgaagaaaag 10141 tacatggact acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga 10201 gtgctgtaag caccagtctt aatgttgtca ggcctgctag tcagccacag cttggggaaa 10261 gctgtgcagc ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga 10321 gaacgccatg gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca 10381 aaaaacccca cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc 10441 ttcaatctgg ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt 10501 agaggagacc ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc 10561 catgag Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome1041923753%0.0100%KX101067.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome1041746742%0.093%KX101064.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1038747043%0.093%KX101061.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1036912153%0.093%KX087101.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1036916453%0.093%KU509998.3Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1036912753%0.093%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1036913453%0.093%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1036914553%0.093%KU926309.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1036915953%0.093%KU729218.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1032913253%0.092%KX117076.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1032912753%0.092%KU820899.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1032911953%0.092%KU527068.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1029913053%0.092%KU820897.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome1027646440%0.092%KX101066.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1023913953%0.092%KX051563.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1023912353%0.092%KU963796.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome1023913453%0.092%KU497555.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1020910753%0.092%KU365778.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1014895553%0.092%KU681081.3Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1005869253%0.092%KU681082.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1000880953%0.091%KU955593.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome937913252%0.092%KU940228.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome937863549%0.092%KU940227.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome937912752%0.092%KU940224.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome931670738%0.092%KX101060.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome931905352%0.092%KU321639.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds930903552%0.092%KU729217.2Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome930904752%0.092%KU707826.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome928902952%0.092%KX087102.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome928901352%0.092%KU501215.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds926905452%0.092%KU991811.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome926901752%0.092%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome926901752%0.092%KU922923.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds926902952%0.092%KU647676.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds926906352%0.092%KJ776791.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome922893752%0.092%KU744693.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds922902952%0.092%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds922904052%0.092%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds922902952%0.092%KU365777.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome884580532%0.094%KX101063.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome883654253%0.088%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome883654653%0.088%KU955592.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID883656653%0.088%LC002520.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome879656653%0.087%KU955594.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome879653053%0.087%KU955591.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds879656653%0.087%KU720415.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome875653253%0.087%AY632535.2Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds872851550%0.090%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds872851050%0.090%KU501216.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds872191312%0.090%KU312314.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds872860550%0.090%KU312312.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds866846850%0.090%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds866891952%0.090%KU955590.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome866893552%0.090%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome866893452%0.090%KU853012.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds866190412%0.090%KU312313.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds863895052%0.089%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds863844750%0.089%KU866423.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds863847250%0.089%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds863889052%0.089%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds863860450%0.089%KU761564.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds8638635%0.089%KU686218.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds847657753%0.086%KF268949.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds838662353%0.086%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds838663153%0.086%KF268948.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds836818250%0.088%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds818810650%0.088%EU545988.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds803172910%0.091%KU646827.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds8018015%0.088%KU758878.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds800172610%0.091%KU646828.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds789818049%0.099%KF993678.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds787647452%0.086%KU963573.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds7809835%0.099%KT200609.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds764753649%0.086%HQ234499.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds76010426%0.091%KU312315.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome713541731%0.097%KX101062.1 Link to comment Share on other sites More sharing options...
niman Posted May 1, 2016 Author Report Share Posted May 1, 2016 Bahia 12 Seq Map Updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
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