niman Posted May 8, 2016 Report Share Posted May 8, 2016 Partial Zika envelope 2016 sequences from patient(s) with arthritis. Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 LOCUS KX173843 849 bp RNA linear VRL 06-MAY-2016 DEFINITION Zika virus isolate 16Z62 envelope protein gene, partial cds. ACCESSION KX173843 VERSION KX173843.1 GI:1026288133 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 849) AUTHORS Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and Arruda,M.B. TITLE Zika Virus in the Joints and Arthritis JOURNAL Unpublished REFERENCE 2 (bases 1 to 849) AUTHORS Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and Arruda,M.B. TITLE Direct Submission JOURNAL Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho University Hospital, Federal University of Rio de Janeiro, Rio de Janeiro, RJ 21942-901, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 7.0.0; BioEdit v. 7.2.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..849 /organism="Zika virus" /mol_type="genomic RNA" /isolate="16Z62" /isolation_source="sinovial" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="16-Mar-2016" CDS <1..>849 /codon_start=1 /product="envelope protein" /protein_id="ANC90423.1" /db_xref="GI:1026288134" /translation="GGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAK FACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRA EATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTP HWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCR LKMDKLR" ORIGIN 1 ggtgggactt gggttgatgt tgtcttggaa catggaggtt gtgtcaccgt aatggcacag 61 gacaaaccga ctgtcgacat agagctggtt acaacaacag tcagcaacat ggcggaggta 121 agatcctact gctatgaggc atcaatatca gacatggctt cggacagccg ctgcccaaca 181 caaggtgaag cctaccttga caagcaatca gacactcaat atgtctgcaa aagaacgtta 241 gtggacagag gctggggaaa tggatgtgga ctttttggca aagggagcct ggtgacatgc 301 gctaagtttg catgctccaa gaaaatgacc gggaagagca tccagccaga gaatctggag 361 taccggataa tgctgtcagt tcatggctcc cagcacagtg ggatgatcgt taatgacaca 421 ggacatgaaa ctgatgagaa tagagcgaag gttgagataa cgcccaattc accaagagcc 481 gaagccaccc tggggggttt tggaagccta ggacttgatt gtgaaccgag gacaggcctt 541 gacttttcag atttgtatta cttgactatg aataacaagc actggttggt tcacaaggag 601 tggttccacg acattccatt accttggcac gctggggcag acaccggaac tccacactgg 661 aacaacaaag aagcactggt agagttcaag gacgcacatg ccaaaaggca aactgtcgtg 721 gttctaggga gtcaagaagg agcagttcac acggcccttg ctggagctct ggaggctgag 781 atggatggtg caaagggaag gctgtcctct ggccacttga aatgtcgcct gaaaatggat 841 aaacttaga Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds15321532100%0.0100%KX173843.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds15261526100%0.099%KX185891.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds15261526100%0.099%KU937936.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome15261526100%0.099%KX117076.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome15261526100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome15261526100%0.099%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds15261526100%0.099%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds15261526100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome15261526100%0.099%KU940228.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds15261526100%0.099%KU955589.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome15261526100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome15261526100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome15261526100%0.099%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds15261526100%0.099%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome15261526100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome15261526100%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome15261526100%0.099%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds15261526100%0.099%KU729218.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome15261526100%0.099%KU527068.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds15261526100%0.099%KU646828.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds15261526100%0.099%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds15261526100%0.099%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds15261526100%0.099%KU312314.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds15261526100%0.099%KJ776791.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome15231523100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome15231523100%0.099%KX197192.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome15231523100%0.099%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome15231523100%0.099%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome15231523100%0.099%KX156774.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome15231523100%0.099%KX101060.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome15231523100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome15231523100%0.099%KU926309.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds15231523100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds15231523100%0.099%KU501216.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds15231523100%0.099%KU312315.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome15231523100%0.099%KU321639.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1521152199%0.0100%KX173844.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome15191519100%0.099%KU940224.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome15171517100%0.099%KX087102.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome15171517100%0.099%KX087101.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds15171517100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds15171517100%0.099%KU740184.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds15171517100%0.099%KU820897.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds15171517100%0.099%KU761564.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome15171517100%0.099%KU681081.3Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome15171517100%0.099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome15171517100%0.099%KU707826.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome15171517100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds15171517100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds15171517100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds15171517100%0.099%KU365777.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds15171517100%0.099%KU312313.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds15171517100%0.099%KJ634273.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1516151699%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1516151699%0.099%KX173840.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds15141514100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds15141514100%0.099%KU955590.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds15141514100%0.099%KU729217.2Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds15141514100%0.099%KU646827.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds15141514100%0.099%KU312312.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome15051505100%0.099%KU744693.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome14991499100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds14991499100%0.099%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds14961496100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds14901490100%0.099%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome14721472100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds13791379100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds11261126100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds11261126100%0.089%KF268948.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1115111599%0.089%KU955595.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1115111599%0.089%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1110111099%0.089%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1110111099%0.089%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1110111099%0.089%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds1110111099%0.089%HQ234501.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds10851085100%0.088%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds10851085100%0.088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds10851085100%0.088%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds10851085100%0.088%HQ234498.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1074107499%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1072107299%0.088%KU963574.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID10721072100%0.088%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds10721072100%0.088%KF383115.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds1072107299%0.088%HQ234500.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds10611061100%0.087%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds10561056100%0.087%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome10501050100%0.087%KU955594.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome10501050100%0.087%AY632535.2Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds10471047100%0.087%DQ859059.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1016101699%0.087%KF383118.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence91791799%0.084%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome888136589%0.099%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome884136789%0.099%KX101066.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds68468463%0.088%KF270886.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds65565559%0.089%KF383039.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds65565559%0.089%KF383032.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds65565559%0.089%KF383022.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds65265259%0.089%KF383034.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds65265259%0.089%KF383026.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds65065042%0.0100%KU985088.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds64664659%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds64664659%0.088%KF383029.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds64564559%0.088%KF383046.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds63963959%3e-17988%KF383038.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds63463459%1e-17788%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds63063059%1e-17688%KF383036.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds62862859%5e-17688%KF383028.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds62862863%5e-17685%AF372422.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds61961959%2e-17387%KF383045.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds61961959%2e-17387%KF383031.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds61661659%3e-17287%KF383043.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds61061059%1e-17087%KF383042.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds61061059%1e-17087%KF383041.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds59459459%1e-16586%KF383040.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds59259259%3e-16585%KF383035.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds47147159%8e-12981%KF383017.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds47147159%8e-12981%KF383015.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds46646659%3e-12780%KF383016.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds46246259%4e-12680%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds46146159%1e-12580%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds45745759%2e-12480%KF383019.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds44344328%4e-120100%KX173842.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID44344328%4e-120100%AB908162.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds42842830%8e-11697%KU686218.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds41241226%7e-111100%KM212966.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds41241226%7e-111100%KM212963.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds40740726%3e-10999%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds40740726%3e-10999%KM212964.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome39891672%1e-10699%KU940227.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds39839825%1e-106100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds39239225%6e-10599%KJ680134.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds38738799%3e-10371%DQ859064.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds36536524%8e-9799%KR815989.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds33833822%1e-8898%KT381874.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds33133121%2e-86100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds33133121%2e-86100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds33133121%2e-86100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds33133121%2e-86100%KU926323.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds32532521%7e-85100%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds32532521%7e-85100%KX062044.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds28828818%2e-73100%KU954085.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds28828818%2e-73100%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds28828818%2e-73100%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds28228218%8e-7299%KR816335.1Select seq gb|AF372412.1|AF372412Spondweni virus envelope protein (E) gene, partial cds17017038%4e-3872%AF372412.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome1381388%2e-28100%KX101067.1 Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 LOCUS KX173844 843 bp RNA linear VRL 06-MAY-2016 DEFINITION Zika virus isolate 16Z62 envelope protein gene, partial cds. ACCESSION KX173844 VERSION KX173844.1 GI:1026288135 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 843) AUTHORS Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and Arruda,M.B. TITLE Zika Virus in the Joints and Arthritis JOURNAL Unpublished REFERENCE 2 (bases 1 to 843) AUTHORS Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and Arruda,M.B. TITLE Direct Submission JOURNAL Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho University Hospital, Federal University of Rio de Janeiro, Rio de Janeiro, RJ 21942-901, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 7.0.0; BioEdit v. 7.2.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..843 /organism="Zika virus" /mol_type="genomic RNA" /isolate="16Z62" /isolation_source="plasma" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="16-Mar-2016" CDS <1..>843 /codon_start=1 /product="envelope protein" /protein_id="ANC90424.1" /db_xref="GI:1026288136" /translation="GTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCY EASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKF ACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAE ATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPH WNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRL KMDKL" ORIGIN 1 gggacttggg ttgatgttgt cttggaacat ggaggttgtg tcaccgtaat ggcacaggac 61 aaaccgactg tcgacataga gctggttaca acaacagtca gcaacatggc ggaggtaaga 121 tcctactgct atgaggcatc aatatcagac atggcttcgg acagccgctg cccaacacaa 181 ggtgaagcct accttgacaa gcaatcagac actcaatatg tctgcaaaag aacgttagtg 241 gacagaggct ggggaaatgg atgtggactt tttggcaaag ggagcctggt gacatgcgct 301 aagtttgcat gctccaagaa aatgaccggg aagagcatcc agccagagaa tctggagtac 361 cggataatgc tgtcagttca tggctcccag cacagtggga tgatcgttaa tgacacagga 421 catgaaactg atgagaatag agcgaaggtt gagataacgc ccaattcacc aagagccgaa 481 gccaccctgg ggggttttgg aagcctagga cttgattgtg aaccgaggac aggccttgac 541 ttttcagatt tgtattactt gactatgaat aacaagcact ggttggttca caaggagtgg 601 ttccacgaca ttccattacc ttggcacgct ggggcagaca ccggaactcc acactggaac 661 aacaaagaag cactggtaga gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt 721 ctagggagtc aagaaggagc agttcacacg gcccttgctg gagctctgga ggctgagatg 781 gatggtgcaa agggaaggct gtcctctggc cacttgaaat gtcgcctgaa aatggataaa 841 ctt Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1519151999%0.0100%KU870645.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome15161516100%0.099%KX117076.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome15161516100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome15161516100%0.099%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds15161516100%0.099%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds15161516100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome15161516100%0.099%KU940228.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds15161516100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome15161516100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome15161516100%0.099%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds15161516100%0.099%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome15161516100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome15161516100%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome15161516100%0.099%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds15161516100%0.099%KU729218.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome15161516100%0.099%KU527068.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds15161516100%0.099%KU646828.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds15161516100%0.099%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds15161516100%0.099%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds15161516100%0.099%KU312314.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds15161516100%0.099%KJ776791.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome15121512100%0.099%KX101060.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome15121512100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome15121512100%0.099%KU926309.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds15121512100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds15121512100%0.099%KU501216.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds15121512100%0.099%KU312315.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome15121512100%0.099%KU321639.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome15081508100%0.099%KU940224.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome15071507100%0.099%KX087102.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome15071507100%0.099%KX087101.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds15071507100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds15071507100%0.099%KU740184.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds15071507100%0.099%KU820897.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds15071507100%0.099%KU761564.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome15071507100%0.099%KU681081.3Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome15071507100%0.099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome15071507100%0.099%KU707826.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome15071507100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds15071507100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds15071507100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds15071507100%0.099%KU365777.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds15071507100%0.099%KU312313.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds15071507100%0.099%KJ634273.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds15031503100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds15031503100%0.099%KU955590.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds15031503100%0.099%KU729217.2Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds15031503100%0.099%KU646827.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds15031503100%0.099%KU312312.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome14941494100%0.099%KU744693.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome14891489100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds14891489100%0.099%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds14851485100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds14801480100%0.099%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome14621462100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds13681368100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds11151115100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds11151115100%0.089%KF268948.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome11061106100%0.089%KU955595.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds11061106100%0.089%KF383116.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome11011101100%0.089%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome11011101100%0.089%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds11011101100%0.089%HQ234501.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds10741074100%0.088%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds10741074100%0.088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds10741074100%0.088%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds10741074100%0.088%HQ234498.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds10651065100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds10631063100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds10631063100%0.088%HQ234500.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID10611061100%0.088%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds10611061100%0.087%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds10501050100%0.087%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds10451045100%0.087%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome10401040100%0.087%KU955594.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome10401040100%0.087%AY632535.2Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds10361036100%0.087%DQ859059.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds10071007100%0.086%KF383118.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence908908100%0.084%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome883135589%0.099%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome879135689%0.099%KX101066.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds67967963%0.088%KF270886.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds65265259%0.089%KF383039.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds65265259%0.089%KF383032.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds65265259%0.089%KF383022.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds65065042%0.0100%KU985088.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds64864859%0.088%KF383034.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds64864859%0.088%KF383026.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds64364359%2e-18088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds64364359%2e-18088%KF383029.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds63963959%3e-17988%KF383046.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds63463459%1e-17788%KF383038.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds62862859%5e-17688%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds62562559%6e-17588%KF383036.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds62562559%6e-17588%KF383028.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds62362363%2e-17485%AF372422.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds61661659%3e-17287%KF383045.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds61661659%3e-17287%KF383031.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds61261259%4e-17187%KF383043.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds60760759%2e-16987%KF383042.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds60760759%2e-16987%KF383041.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds59059059%1e-16486%KF383040.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds58758759%1e-16385%KF383035.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds46846859%9e-12881%KF383017.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds46846859%9e-12881%KF383015.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds46246259%4e-12680%KF383016.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds45945959%5e-12580%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds45745759%2e-12480%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds45345359%2e-12380%KF383019.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID43743728%2e-118100%AB908162.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds42342330%4e-11497%KU686218.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds40740726%3e-109100%KM212966.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds40740726%3e-109100%KM212963.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds40140126%1e-10799%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds40140126%1e-10799%KM212964.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome39290572%6e-10599%KU940227.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds39239225%6e-105100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds38738725%3e-10399%KJ680134.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds38138199%1e-10171%DQ859064.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds36036024%4e-9599%KR815989.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds33333322%5e-8798%KT381874.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds32532521%7e-85100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds32532521%7e-85100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds32532521%7e-85100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds32532521%7e-85100%KU926323.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds32032020%3e-83100%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds32032020%3e-83100%KX062044.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds28228218%8e-72100%KU954085.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds28228218%8e-72100%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds28228218%8e-72100%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds27727718%3e-7099%KR816335.1Select seq gb|AF372412.1|AF372412Spondweni virus envelope protein (E) gene, partial cds17017039%4e-3872%AF372412.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome1381389%2e-28100%KX101067.1 Link to comment Share on other sites More sharing options...
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