Jump to content

2016 Zika Sequence From Brazil Arthritis Cases


niman

Recommended Posts

LOCUS       KX173843                 849 bp    RNA     linear   VRL 06-MAY-2016
DEFINITION  Zika virus isolate 16Z62 envelope protein gene, partial cds.
ACCESSION   KX173843
VERSION     KX173843.1  GI:1026288133
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and
            Arruda,M.B.
  TITLE     Zika Virus in the Joints and Arthritis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and
            Arruda,M.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho
            University Hospital, Federal University of Rio de Janeiro, Rio de
            Janeiro, RJ 21942-901, Brazil
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: DNAstar v. 7.0.0; BioEdit v. 7.2.5
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="16Z62"
                     /isolation_source="sinovial"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="16-Mar-2016"
     CDS             <1..>849
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="ANC90423.1"
                     /db_xref="GI:1026288134"
                     /translation="GGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC
                     YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAK
                     FACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRA
                     EATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTP
                     HWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCR
                     LKMDKLR"
ORIGIN      
        1 ggtgggactt gggttgatgt tgtcttggaa catggaggtt gtgtcaccgt aatggcacag
       61 gacaaaccga ctgtcgacat agagctggtt acaacaacag tcagcaacat ggcggaggta
      121 agatcctact gctatgaggc atcaatatca gacatggctt cggacagccg ctgcccaaca
      181 caaggtgaag cctaccttga caagcaatca gacactcaat atgtctgcaa aagaacgtta
      241 gtggacagag gctggggaaa tggatgtgga ctttttggca aagggagcct ggtgacatgc
      301 gctaagtttg catgctccaa gaaaatgacc gggaagagca tccagccaga gaatctggag
      361 taccggataa tgctgtcagt tcatggctcc cagcacagtg ggatgatcgt taatgacaca
      421 ggacatgaaa ctgatgagaa tagagcgaag gttgagataa cgcccaattc accaagagcc
      481 gaagccaccc tggggggttt tggaagccta ggacttgatt gtgaaccgag gacaggcctt
      541 gacttttcag atttgtatta cttgactatg aataacaagc actggttggt tcacaaggag
      601 tggttccacg acattccatt accttggcac gctggggcag acaccggaac tccacactgg
      661 aacaacaaag aagcactggt agagttcaag gacgcacatg ccaaaaggca aactgtcgtg
      721 gttctaggga gtcaagaagg agcagttcac acggcccttg ctggagctct ggaggctgag
      781 atggatggtg caaagggaag gctgtcctct ggccacttga aatgtcgcct gaaaatggat
      841 aaacttaga
Link to comment
Share on other sites

Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
15321532100%0.0100%KX173843.1
15261526100%0.099%KX185891.1
15261526100%0.099%KU937936.1
15261526100%0.099%KX117076.1
15261526100%0.099%KX051563.1
15261526100%0.099%KU509998.3
15261526100%0.099%KU963796.1
15261526100%0.099%KU991811.1
15261526100%0.099%KU940228.1
15261526100%0.099%KU955589.1
15261526100%0.099%KU870645.1
15261526100%0.099%KU922960.1
15261526100%0.099%KU922923.1
15261526100%0.099%KU866423.1
15261526100%0.099%KU853013.1
15261526100%0.099%KU853012.1
15261526100%0.099%KU820899.2
15261526100%0.099%KU729218.1
15261526100%0.099%KU527068.1
15261526100%0.099%KU646828.1
15261526100%0.099%KU647676.1
15261526100%0.099%KU365778.1
15261526100%0.099%KU312314.1
15261526100%0.099%KJ776791.1
15231523100%0.099%KX198135.1
15231523100%0.099%KX197192.1
15231523100%0.099%KX156776.1
15231523100%0.099%KX156775.1
15231523100%0.099%KX156774.1
15231523100%0.099%KX101060.1
15231523100%0.099%KU926310.1
15231523100%0.099%KU926309.1
15231523100%0.099%KU501217.1
15231523100%0.099%KU501216.1
15231523100%0.099%KU312315.1
15231523100%0.099%KU321639.1
1521152199%0.0100%KX173844.1
15191519100%0.099%KU940224.1
15171517100%0.099%KX087102.1
15171517100%0.099%KX087101.1
15171517100%0.099%KU820898.1
15171517100%0.099%KU740184.2
15171517100%0.099%KU820897.1
15171517100%0.099%KU761564.1
15171517100%0.099%KU681081.3
15171517100%0.099%KU497555.1
15171517100%0.099%KU707826.1
15171517100%0.099%KU501215.1
15171517100%0.099%KU365780.1
15171517100%0.099%KU365779.1
15171517100%0.099%KU365777.1
15171517100%0.099%KU312313.1
15171517100%0.099%KJ634273.1
1516151699%0.099%KX173841.1
1516151699%0.099%KX173840.1
15141514100%0.099%KX056898.1
15141514100%0.099%KU955590.1
15141514100%0.099%KU729217.2
15141514100%0.099%KU646827.1
15141514100%0.099%KU312312.1
15051505100%0.099%KU744693.1
14991499100%0.099%KU955593.1
14991499100%0.099%JN860885.1
14961496100%0.099%KF993678.1
14901490100%0.099%EU545988.1
14721472100%0.098%KU681082.3
13791379100%0.096%HQ234499.1
11261126100%0.089%KF268950.1
11261126100%0.089%KF268948.1
1115111599%0.089%KU955595.1
1115111599%0.089%KF383116.1
1110111099%0.089%KX198134.1
1110111099%0.089%KU955592.1
1110111099%0.089%KU955591.1
1110111099%0.089%HQ234501.1
10851085100%0.088%KU720415.1
10851085100%0.088%KF383121.1
10851085100%0.088%KF383119.1
10851085100%0.088%HQ234498.1
1074107499%0.088%KF383117.1
1072107299%0.088%KU963574.1
10721072100%0.088%LC002520.1
10721072100%0.088%KF383115.1
1072107299%0.088%HQ234500.1
10611061100%0.087%KF268949.1
10561056100%0.087%KU963573.1
10501050100%0.087%KU955594.1
10501050100%0.087%AY632535.2
10471047100%0.087%DQ859059.1
1016101699%0.087%KF383118.1
91791799%0.084%KF383120.1
888136589%0.099%KX101061.1
884136789%0.099%KX101066.1
68468463%0.088%KF270886.1
65565559%0.089%KF383039.1
65565559%0.089%KF383032.1
65565559%0.089%KF383022.1
65265259%0.089%KF383034.1
65265259%0.089%KF383026.1
65065042%0.0100%KU985088.1
64664659%0.088%KF383033.1
64664659%0.088%KF383029.1
64564559%0.088%KF383046.1
63963959%3e-17988%KF383038.1
63463459%1e-17788%KF383037.1
63063059%1e-17688%KF383036.1
62862859%5e-17688%KF383028.1
62862863%5e-17685%AF372422.1
61961959%2e-17387%KF383045.1
61961959%2e-17387%KF383031.1
61661659%3e-17287%KF383043.1
61061059%1e-17087%KF383042.1
61061059%1e-17087%KF383041.1
59459459%1e-16586%KF383040.1
59259259%3e-16585%KF383035.1
47147159%8e-12981%KF383017.1
47147159%8e-12981%KF383015.1
46646659%3e-12780%KF383016.1
46246259%4e-12680%KF383020.1
46146159%1e-12580%KF383021.1
45745759%2e-12480%KF383019.1
44344328%4e-120100%KX173842.1
44344328%4e-120100%AB908162.1
42842830%8e-11697%KU686218.1
41241226%7e-111100%KM212966.1
41241226%7e-111100%KM212963.1
40740726%3e-10999%KM212965.1
40740726%3e-10999%KM212964.1
39891672%1e-10699%KU940227.1
39839825%1e-106100%KJ579441.1
39239225%6e-10599%KJ680134.1
38738799%3e-10371%DQ859064.1
36536524%8e-9799%KR815989.1
33833822%1e-8898%KT381874.1
33133121%2e-86100%KU926326.1
33133121%2e-86100%KU926325.1
33133121%2e-86100%KU926324.1
33133121%2e-86100%KU926323.1
32532521%7e-85100%KX062045.1
32532521%7e-85100%KX062044.1
28828818%2e-73100%KU954085.1
28828818%2e-73100%KR816334.1
28828818%2e-73100%KR816333.1
28228218%8e-7299%KR816335.1
17017038%4e-3872%AF372412.1
1381388%2e-28100%KX101067.1
Link to comment
Share on other sites

LOCUS       KX173844                 843 bp    RNA     linear   VRL 06-MAY-2016
DEFINITION  Zika virus isolate 16Z62 envelope protein gene, partial cds.
ACCESSION   KX173844
VERSION     KX173844.1  GI:1026288135
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and
            Arruda,M.B.
  TITLE     Zika Virus in the Joints and Arthritis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Roimicher,L., Tanuri,A., Ferreira,O.C. Jr., Brindeiro,R.M. and
            Arruda,M.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho
            University Hospital, Federal University of Rio de Janeiro, Rio de
            Janeiro, RJ 21942-901, Brazil
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: DNAstar v. 7.0.0; BioEdit v. 7.2.5
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="16Z62"
                     /isolation_source="plasma"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="16-Mar-2016"
     CDS             <1..>843
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="ANC90424.1"
                     /db_xref="GI:1026288136"
                     /translation="GTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCY
                     EASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKF
                     ACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAE
                     ATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPH
                     WNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRL
                     KMDKL"
ORIGIN      
        1 gggacttggg ttgatgttgt cttggaacat ggaggttgtg tcaccgtaat ggcacaggac
       61 aaaccgactg tcgacataga gctggttaca acaacagtca gcaacatggc ggaggtaaga
      121 tcctactgct atgaggcatc aatatcagac atggcttcgg acagccgctg cccaacacaa
      181 ggtgaagcct accttgacaa gcaatcagac actcaatatg tctgcaaaag aacgttagtg
      241 gacagaggct ggggaaatgg atgtggactt tttggcaaag ggagcctggt gacatgcgct
      301 aagtttgcat gctccaagaa aatgaccggg aagagcatcc agccagagaa tctggagtac
      361 cggataatgc tgtcagttca tggctcccag cacagtggga tgatcgttaa tgacacagga
      421 catgaaactg atgagaatag agcgaaggtt gagataacgc ccaattcacc aagagccgaa
      481 gccaccctgg ggggttttgg aagcctagga cttgattgtg aaccgaggac aggccttgac
      541 ttttcagatt tgtattactt gactatgaat aacaagcact ggttggttca caaggagtgg
      601 ttccacgaca ttccattacc ttggcacgct ggggcagaca ccggaactcc acactggaac
      661 aacaaagaag cactggtaga gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt
      721 ctagggagtc aagaaggagc agttcacacg gcccttgctg gagctctgga ggctgagatg
      781 gatggtgcaa agggaaggct gtcctctggc cacttgaaat gtcgcctgaa aatggataaa
      841 ctt
Link to comment
Share on other sites

Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
1519151999%0.0100%KU870645.1
15161516100%0.099%KX117076.1
15161516100%0.099%KX051563.1
15161516100%0.099%KU509998.3
15161516100%0.099%KU963796.1
15161516100%0.099%KU991811.1
15161516100%0.099%KU940228.1
15161516100%0.099%KU955589.1
15161516100%0.099%KU922960.1
15161516100%0.099%KU922923.1
15161516100%0.099%KU866423.1
15161516100%0.099%KU853013.1
15161516100%0.099%KU853012.1
15161516100%0.099%KU820899.2
15161516100%0.099%KU729218.1
15161516100%0.099%KU527068.1
15161516100%0.099%KU646828.1
15161516100%0.099%KU647676.1
15161516100%0.099%KU365778.1
15161516100%0.099%KU312314.1
15161516100%0.099%KJ776791.1
15121512100%0.099%KX101060.1
15121512100%0.099%KU926310.1
15121512100%0.099%KU926309.1
15121512100%0.099%KU501217.1
15121512100%0.099%KU501216.1
15121512100%0.099%KU312315.1
15121512100%0.099%KU321639.1
15081508100%0.099%KU940224.1
15071507100%0.099%KX087102.1
15071507100%0.099%KX087101.1
15071507100%0.099%KU820898.1
15071507100%0.099%KU740184.2
15071507100%0.099%KU820897.1
15071507100%0.099%KU761564.1
15071507100%0.099%KU681081.3
15071507100%0.099%KU497555.1
15071507100%0.099%KU707826.1
15071507100%0.099%KU501215.1
15071507100%0.099%KU365780.1
15071507100%0.099%KU365779.1
15071507100%0.099%KU365777.1
15071507100%0.099%KU312313.1
15071507100%0.099%KJ634273.1
15031503100%0.099%KX056898.1
15031503100%0.099%KU955590.1
15031503100%0.099%KU729217.2
15031503100%0.099%KU646827.1
15031503100%0.099%KU312312.1
14941494100%0.099%KU744693.1
14891489100%0.099%KU955593.1
14891489100%0.099%JN860885.1
14851485100%0.099%KF993678.1
14801480100%0.099%EU545988.1
14621462100%0.098%KU681082.3
13681368100%0.096%HQ234499.1
11151115100%0.089%KF268950.1
11151115100%0.089%KF268948.1
11061106100%0.089%KU955595.1
11061106100%0.089%KF383116.1
11011101100%0.089%KU955592.1
11011101100%0.089%KU955591.1
11011101100%0.089%HQ234501.1
10741074100%0.088%KU720415.1
10741074100%0.088%KF383121.1
10741074100%0.088%KF383119.1
10741074100%0.088%HQ234498.1
10651065100%0.088%KF383117.1
10631063100%0.088%KU963574.1
10631063100%0.088%HQ234500.1
10611061100%0.088%LC002520.1
10611061100%0.087%KF383115.1
10501050100%0.087%KF268949.1
10451045100%0.087%KU963573.1
10401040100%0.087%KU955594.1
10401040100%0.087%AY632535.2
10361036100%0.087%DQ859059.1
10071007100%0.086%KF383118.1
908908100%0.084%KF383120.1
883135589%0.099%KX101061.1
879135689%0.099%KX101066.1
67967963%0.088%KF270886.1
65265259%0.089%KF383039.1
65265259%0.089%KF383032.1
65265259%0.089%KF383022.1
65065042%0.0100%KU985088.1
64864859%0.088%KF383034.1
64864859%0.088%KF383026.1
64364359%2e-18088%KF383033.1
64364359%2e-18088%KF383029.1
63963959%3e-17988%KF383046.1
63463459%1e-17788%KF383038.1
62862859%5e-17688%KF383037.1
62562559%6e-17588%KF383036.1
62562559%6e-17588%KF383028.1
62362363%2e-17485%AF372422.1
61661659%3e-17287%KF383045.1
61661659%3e-17287%KF383031.1
61261259%4e-17187%KF383043.1
60760759%2e-16987%KF383042.1
60760759%2e-16987%KF383041.1
59059059%1e-16486%KF383040.1
58758759%1e-16385%KF383035.1
46846859%9e-12881%KF383017.1
46846859%9e-12881%KF383015.1
46246259%4e-12680%KF383016.1
45945959%5e-12580%KF383020.1
45745759%2e-12480%KF383021.1
45345359%2e-12380%KF383019.1
43743728%2e-118100%AB908162.1
42342330%4e-11497%KU686218.1
40740726%3e-109100%KM212966.1
40740726%3e-109100%KM212963.1
40140126%1e-10799%KM212965.1
40140126%1e-10799%KM212964.1
39290572%6e-10599%KU940227.1
39239225%6e-105100%KJ579441.1
38738725%3e-10399%KJ680134.1
38138199%1e-10171%DQ859064.1
36036024%4e-9599%KR815989.1
33333322%5e-8798%KT381874.1
32532521%7e-85100%KU926326.1
32532521%7e-85100%KU926325.1
32532521%7e-85100%KU926324.1
32532521%7e-85100%KU926323.1
32032020%3e-83100%KX062045.1
32032020%3e-83100%KX062044.1
28228218%8e-72100%KU954085.1
28228218%8e-72100%KR816334.1
28228218%8e-72100%KR816333.1
27727718%3e-7099%KR816335.1
17017039%4e-3872%AF372412.1
1381389%2e-28100%KX101067.1
Link to comment
Share on other sites

Please sign in to comment

You will be able to leave a comment after signing in



Sign In Now
  • Recently Browsing   0 members

    • No registered users viewing this page.
×
×
  • Create New...