niman Posted August 12, 2016 Report Share Posted August 12, 2016 CAS Key Laboratory of Pathogenic Microbiology and Immunology has release a full 2016 sequence, SMGC-1, from Shenzhen ex-Samoa. Link to comment Share on other sites More sharing options...
niman Posted August 12, 2016 Author Report Share Posted August 12, 2016 LOCUS KX266255 10785 bp RNA linear VRL 10-AUG-2016 DEFINITION Zika virus isolate ZIKV_SMGC-1, complete genome. ACCESSION KX266255 VERSION KX266255.1 GI:1032810274 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10785) AUTHORS Bi,Y., Wang,Q., Yang,Y., Liu,Y. and Gao,G.F. TITLE Genetic and Biological Characterization for Zika Viruses Imported through Shenzhen Port JOURNAL Chin. Sci. Bull. 61 (22), 2463-2474 (2016) REFERENCE 2 (bases 1 to 10785) AUTHORS Bi,Y., Wang,Q., Yang,Y., Liu,Y. and Gao,G.F. TITLE Direct Submission JOURNAL Submitted (11-MAY-2016) CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 West Beichen Road Chaoyang District, Beijing 100101, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10785 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV_SMGC-1" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="China" /collection_date="14-Feb-2016" /note="passage details: Vero cells" CDS 99..10370 /codon_start=1 /product="polyprotein" /protein_id="ANH21697.1" /db_xref="GI:1032810275" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTNVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGARRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFQAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPXVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRSMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVRPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 tctgtgtgaa tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac 61 aggttttatt ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat 121 ccggaggatt ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg 181 ggggcttgaa gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct 241 tggcgattct agccttcttg agattcacgg caatcaagcc atcactgggt ctcatcaata 301 gatggggttc agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc 361 tggctgccat gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata 421 ctaatgtcgg aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac 481 gtgggagtgc atactatatg tacttggaca gaaacgatgc tggggaggcc atatcttttc 541 caaccacatt ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg 601 atgccaccat gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg 661 attgttggtg caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag 721 gtgaagcacg gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc 781 aaacgcggtc gcaaacttgg ttggaatcaa gagaatacac aaagcacttg attagagtcg 841 aaaattggat attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt 901 tgggaagctc aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg 961 catacagcat caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg 1021 ggacttgggt tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca 1081 aaccgactgt cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat 1141 cctactgcta tgaggcatca atatcggaca tggcttcgga cagccgctgc ccaacacaag 1201 gtgaagccta ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg 1261 acagaggctg gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta 1321 agtttgcatg ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc 1381 ggataatgct gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac 1441 atgaaactga tgagaataga gcgaaggttg agataacgcc caattcacca agagccgaag 1501 ccaccctggg gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact 1561 tttcagattt gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt 1621 tccacgacat tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca 1681 acaaagaagc actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc 1741 tagggagtca agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg 1801 atggtgcaaa gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac 1861 ttagattgaa gggcgtgtca tactccttgt gtaccgcagc gttcacattc accaagatcc 1921 cggctgaaac actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac 1981 cttgcaaggt tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggc 2041 tgataaccgc taaccccgta atcactgaaa gcactgagaa ctccaagatg atgctggaac 2101 ttgatccacc atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc 2161 accactggca caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg 2221 ccaggagaat ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc 2281 tcaactcatt gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg 2341 gaggaatgtc ctggttctca caaattctca ttggaacgtt gctgatgtgg ttgggtctga 2401 acacaaagaa tggatctatt tcccttatgt gcttggcctt agggggagtg ttgatcttct 2461 tatccacagc cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga 2521 gatgcggtac aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt 2581 accatcctga ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta 2641 tctgtgggat ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg 2701 agctcaacgc aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa 2761 aaaaccccat gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg 2821 gctggaaggc ttgggggaaa tcgtacttcg tcagagcagc aaagacaaat aacagctttg 2881 tcgtggatgg tgacacactg aaggaatgcc cactcaaaca tagagcatgg aacagctttc 2941 ttgtggagga tcatgggttc ggggtatttc acactagtgt ctggctcaag gttagagaag 3001 attattcatt agagtgtgat ccagccgtta ttggaacagc tgttaaggga aaggaggctg 3061 tacacagtga tctaggctac tggattgaga gtgagaagaa tgacacatgg aggctgaaga 3121 gggcccatct gatcgagatg aaaacatgtg aatggccaaa gtcccacaca ttgtggacag 3181 atggaataga agagagtgat ctgatcatac ccaagtcttt agctgggcca ctcagccatc 3241 acaataccag agagggctac aggacccaaa tgaaagggcc atggcacagt gaagagcttg 3301 aaattcggtt tgaggaatgc ccaggcacca aggtccacgt ggaggaaaca tgtggaacaa 3361 gaggaccatc tctgagatca accactgcaa gcggaagggt gatcgaggaa tggtgctgca 3421 gggagtgcac aatgccccca ctgtcgttcc aggctaaaga tggctgttgg tatggaatgg 3481 agataaggcc caggaaagaa ccagaaagta acttagtaag gtcaatggtg actgcaggat 3541 caactgatca catggatcac ttctcccttg gagtgcttgt gattctgctc atggtgcagg 3601 aagggctgaa gaagagaatg accacaaaga tcatcataag cacatcaatg gcagtgctgg 3661 tagctatgat cctgggagga ttttcaatga gtgacctggc taagcttgca attttgatgg 3721 gtgccacctt cgcggaaatg aacactggag gagatgtagc tcatctggcg ctgatagcgg 3781 cattcaaagt cagaccagcg ttgctggtat ctttcatctt cagagctaat tggacacccc 3841 gtgaaagcat gctgctggcc ttggcctcgt gtcttttgca aactgcgatc tccgccttgg 3901 aaggcgacct gatggttctc atcaatggtt ttgctttggc ctggttggca atacgagcga 3961 tggttgttcc acgcactgat aacatcacct tggcaatcct ggctgctctg acaccactgg 4021 cccggggcac actgcttgtg gcgtggagag caggccttgc tacttgcggg gggtttatgc 4081 tcctctctct gaagggaaaa ggcagtgtga agaagaactt accanttgtc atggccctgg 4141 gactaaccgc tgtgaggctg gtcgacccca tcaacgtggt gggactgctg ttgctcacaa 4201 ggagtgggaa gcggagctgg ccccctagcg aagtactcac agctgttggc ctgatatgcg 4261 cattggctgg agggttcgcc aaggcagata tagagatggc tgggcccatg gccgcggtcg 4321 gtctgctaat tgtcagttac gtggtctcag gaaagagtgt ggacatgtac attgaaagag 4381 caggtgacat cacatgggaa aaagatgcgg aagtcactgg aaacagtccc cggcttgatg 4441 tggcgctaga tgagagtggt gatttctccc tggtggagga tgacggtccc cccatgagag 4501 agatcatact caaggtggtc ctgatgacca tctgtggcat gaacccaata gccataccct 4561 ttgcagctgg agcgtggtac gtatacgtga agactggaaa aaggagtgga gctctatggg 4621 atgtgcctgc tcccaaggaa gtaaaaaagg gggagaccac agatggagtg tacagagtga 4681 tgactcgtag actgctaggt tcaacacaag ttggagtggg agttatgcaa gagggggtct 4741 ttcacaccat gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa gggagacttg 4801 atccatactg gggagatgtc aagcaggatc tggtgtcata ctgtggtcca tggaagctag 4861 atgccgcctg ggacgggcac agcgaggtgc agctcttggc cgtgcccccc ggagagagag 4921 cgaggaacat ccagactctg cccggaatat ttaagacaaa ggatggggac attggagcgg 4981 ttgcgctgga ttacccagca ggaacttcag gatctccaat cctagacaag tgtgggagag 5041 tgataggact ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca 5101 cccaagggag gagggaggaa gagactcctg ttgagtgctt cgagccttcg atgctgaaga 5161 agaagcagct aactgtctta gacttgcatc ctggagctgg gaaaaccagg agagttcttc 5221 ctgaaatagt ccgtgaagcc ataaaaacaa gactccgtac tgtgatctta gctccaacca 5281 gggttgtcgc tgccgaaatg gaggaagccc ttagagggct tccagtgcgt tatatgacaa 5341 cagcagtcaa tgtcacccac tctggaacag aaatcgtcga cttaatgtgc catgccacct 5401 tcacttcacg tctactacag ccaatcagag tccccaacta taatctgtat attatggatg 5461 aggcccactt cacagatccc tcaagtatag cagcaagagg atacatttca acaagggttg 5521 agatgggcga ggcggctgcc atcttcatga ccgccacgcc accaggaacc cgtgacgcat 5581 ttccggactc caactcacca attatggaca ccgaagtgga agtcccagag agagcctgga 5641 gctcaggctt tgattgggtg acggatcatt ctggaaaaac agtctggttt gttccaagcg 5701 tgaggaacgg caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc 5761 tcagcagaaa gacttttgag acagagttcc agaaaacaaa acatcaagag tgggactttg 5821 tcgtgacaac tgacatttca gagatgggcg ccaactttaa agctgaccgt gtcatagatt 5881 ccaggagatg cctaaagccg gtcatacttg atggcgagag agtcattctg gctggaccca 5941 tgcctgtcac acatgccagc gctgcccaga ggagggggcg cataggcagg aatcccaaca 6001 aacctggaga tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac 6061 actggcttga agcaagaatg ctccttgaca atatttacct ccaagatggc ctcatagcct 6121 cgctctatcg acctgaggcc gacaaagtag cagccattga gggagagttc aagcttagga 6181 cggagcaaag gaagaccttt gtggaactca tgaaaagagg agatcttcct gtttggctgg 6241 cctatcaggt tgcatctgcc ggaataacct acacagatag aagatggtgc tttgatggca 6301 cgaccaacaa caccataatg gaagacagtg tgccggcaga ggtgtggacc agacacggag 6361 agaaaagagt gctcaaaccg aggtggatgg acgccagagt ttgttcagat cacgcggccc 6421 tgaagtcatt caaggagttt gccgctggga aaagaggagc ggcttttgga gtgatggaag 6481 ccttgggaac actgccagga cacatgacag agagattcca ggaagccatt gacaacctcg 6541 ctgtgctcat gcgggcagag actggaagca ggccttacaa agccgcggcg gcccaattgc 6601 cggagaccct agagaccatt atgcttttgg ggttgctggg aacagtctcg ctgggaatct 6661 ttttcgtctt gatgaggaac aagggcatag ggaagatggg ctttggaatg gtgactcttg 6721 gggccagcgc atggctcatg tggctctcgg aaattgagcc agccagaatt gcatgtgtcc 6781 tcattgttgt gttcctattg ctggtggtgc tcatacctga gccagaaaag caaagatctc 6841 cccaggacaa ccaaatggca atcatcatca tggtagcagt aggtcttctg ggcttgatta 6901 ccgccaatga actcggatgg ttggagagaa caaagagtga cctaagccat ctaatgggaa 6961 ggagagagga gggggcaacc ataggattct caatggacat tgacctgcgg ccagcctcag 7021 cttgggccat ctacgctgcc ttgacaactt tcattacccc agccgtccaa catgcagtga 7081 ccacttcata caacaactac tccttaatgg cgatggccac gcaagctgga gtgttgtttg 7141 gtatgggcaa agggatgcca ttctacgcat gggactttgg agtcccgctg ctaatgatag 7201 gttgctactc acaattaaca cccctgaccc taatagtagc catcattttg ctcgtggcgc 7261 actacatgta cttgatccca gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa 7321 cggcagctgg catcatgaag aaccctgttg tggatggaat agtggtgact gacattgaca 7381 caatgacaat tgacccccaa gtggagaaaa agatgggaca ggtgctactc atagcagtag 7441 ccgtctccag cgccatactg tcgcggaccg cctgggggtg gggggaggct ggggccctga 7501 tcacagctgc aacttccact ttgtgggaag gctctccgaa caagtactgg aactcctcta 7561 cagccacttc actgtgtaac atttttaggg gaagttactt ggctggagct tctctaatct 7621 acacagtaac aagaaacgct ggcttggtca agagacgtgg gggtggaaca ggagagaccc 7681 tgggagagaa atggaaggcc cgcttgaacc agatgtcggc cctggagttc tactcctaca 7741 aaaagtcagg catcaccgag gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg 7801 tggcaacggg aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc 7861 ggggatacct gcagccctat ggaaaggtca ttgatcttgg atgtggcaga gggggctgga 7921 gttactacgc cgccaccatc cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc 7981 ctggtcatga agaacccatg ttggtgcaaa gctatgggtg gaacatagtc cgtcttaaga 8041 gtggggtgga cgtctttcat atggcggctg agccgtgtga cacgttgctg tgtgacatag 8101 gtgagtcatc atctagtcct gaagtggaag aagcacggac gctcagagtc ctttccatgg 8161 tgggggattg gcttgaaaaa agaccaggag ccttttgtat aaaagtgttg tgcccataca 8221 ccagcactat gatggaaacc ctggagcgac tgcagcgtag gtatggggga ggactggtca 8281 gagtgccact ctcccgcaac tctacacatg agatgtactg ggtctctgga gcgaaaagca 8341 acaccataaa aagtgtgtcc accacgagcc agctcctctt ggggcgcatg gacgggccca 8401 ggaggccagt gaaatatgag gaggatgtga atctcggctc tggcacgcgg gctgtggtaa 8461 gctgcgctga agctcccaac atgaagatca ttggtaaccg cattgaaagg atccgcagtg 8521 agcacgcgga aacgtggttc tttgacgaga accacccata taggacatgg gcttaccatg 8581 gaagctatga ggcccccaca caagggtcag cgtcctctct aataaacggg gttgtcaggc 8641 tcctgtcaaa accctgggac gtggtgactg gagtcacagg aatagccatg accgacacca 8701 caccgtatgg tcagcaaaga gttttcaagg aaaaagtgga cactagggtg ccagatcccc 8761 aagaaggcac tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa gagctaggca 8821 aacacaaacg gccacgagtc tgtaccaaag aagagttcat caacaaggtt cgtagcaatg 8881 cagcattagg ggcaatattt gaagaggaaa aagagtggaa gactgcagtg gaagctgtga 8941 acgatccaag gttctgggct ctagtggaca aggaaagaga gcaccacctg agaggagagt 9001 gccagagttg tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa 9061 aggccaaggg cagccgcgcc atctggtata tgtggctagg ggctagattt ctagagttcg 9121 aagcccttgg attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg 9181 ttgaagggct gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag 9241 gaggaaggat gtatgcagat gacactgctg gctgggacac ccgcatcagc aggtttgatc 9301 tggagaatga agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg 9361 ccataatcaa gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag 9421 ggaagacagt tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca 9481 cttacgctct taacacattt accaacctag tggtgcaact cattcggagt atggaggctg 9541 aggaagttct agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact 9601 ggctgcagag caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg 9661 ttgtgaggcc aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggga 9721 aagttaggaa ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaggaag 9781 ttccgttttg ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg 9841 ttccctgccg ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat 9901 ggagcatccg ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt 9961 atttccacag aagggacctc cgactgatgg ccaatgccat ttgttcatct gtgccagttg 10021 actgggttcc aactgggaga actacctggt caatccatgg aaagggagaa tggatgacca 10081 ctgaagacat gcttgtggtg tggaacagag tgtggattga ggagaacgac cacatggaag 10141 acaagacccc agttacgaaa tggacagaca ttccctattt gggaaaaagg gaagacttgt 10201 ggtgtggatc tctcataggg cacagaccgc gcaccacctg ggctgagaac attaaaaaca 10261 cagtcaacat ggtgcgcagg atcataggtg atgaagaaaa gtacatggac tacctatcca 10321 cccaagttcg ctacttgggt gaagaagggt ctacacctgg agtgctgtaa gcaccaatct 10381 tagtgttgtc aggcctgcta gtcagccaca gcttggggaa agctgtgcag cctgtgaccc 10441 ccccaggaga agctgggaaa ccaagcctat agtcaggccg agaacgccat ggcacggaag 10501 aagccatgct gcctgtgagc ccctcagagg acactgagtc aaaaaacccc acgcgcttgg 10561 aggcgcagga tgggaaaaga aggtggcgac cttccccacc ctttaatctg gggcctgaac 10621 tggagatcag ctgtggatct ccagaagagg gactagtggt tagaggagac cccccggaaa 10681 acgcaaaaca gcatattgac gctgggaaag accagagact ccatgagttt ccaccacgct 10741 ggccgccagg cacagatcgc cgaatagcgg cggccggtgt gggga Link to comment Share on other sites More sharing options...
niman Posted August 12, 2016 Author Report Share Posted August 12, 2016 (edited) Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18521 18521 100% 0.0 100% KX266255.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18521 18521 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18521 18521 100% 0.0 99% KU955589.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18516 18516 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18516 18516 100% 0.0 99% KU963796.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18512 18512 100% 0.0 99% KU820899.2 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18507 18507 100% 0.0 99% KU866423.2 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18507 18507 100% 0.0 99% KX117076.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18386 18386 100% 0.0 99% KX369547.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18386 18386 100% 0.0 99% KJ776791.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18341 18341 100% 0.0 99% KU509998.3 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18323 18323 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18323 18323 100% 0.0 99% KX051563.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18318 18318 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18309 18309 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18305 18305 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18305 18305 100% 0.0 99% KX197192.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18296 18296 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18296 18296 100% 0.0 99% KU926309.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18296 18296 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18296 18296 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18291 18291 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18287 18287 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18287 18287 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18287 18287 100% 0.0 99% KX156776.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18283 18283 99% 0.0 99% KU497555.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18282 18282 100% 0.0 99% KU527068.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18278 18278 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18278 18278 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18278 18278 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18278 18278 100% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18273 18273 100% 0.0 99% KX520666.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18273 18273 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18269 18269 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18269 18269 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18269 18269 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18269 18269 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18269 18269 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18269 18269 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18264 18264 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18264 18264 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18264 18264 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18260 18260 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18260 18260 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18258 18258 100% 0.0 99% KU853012.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18251 18251 100% 0.0 99% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18251 18251 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18251 18251 100% 0.0 99% KU761564.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955590.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18197 18197 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18101 18101 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18047 18047 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17750 17750 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17750 17750 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17685 17685 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17603 17603 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17439 17439 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16438 16438 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16429 16429 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16424 16424 100% 0.0 95% KX377336.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 13283 13283 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 13277 13277 99% 0.0 89% HQ234498.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 13268 13268 100% 0.0 89% KX377335.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 13266 13266 100% 0.0 89% KF383115.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 13265 13265 100% 0.0 89% KF383119.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 13263 13263 100% 0.0 89% KF268949.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 13263 13263 100% 0.0 89% DQ859059.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 13259 13259 100% 0.0 89% KU955595.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 13259 13259 100% 0.0 89% LC002520.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 13250 13250 100% 0.0 89% KU955592.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 13245 13245 100% 0.0 89% KF268948.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 13243 13243 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 13243 13243 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 13243 13243 100% 0.0 89% KU955594.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 13238 13720 100% 0.0 89% KX198134.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 13238 13238 100% 0.0 89% KF268950.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 13232 13232 100% 0.0 89% KU955591.1 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 13210 13210 99% 0.0 89% HQ234501.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 13209 13209 100% 0.0 89% KF383116.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 13201 13201 100% 0.0 89% AY632535.2 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 13176 13176 100% 0.0 88% KX601166.1 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 13138 13138 100% 0.0 88% KF383117.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 13118 13221 100% 0.0 88% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 13117 13117 99% 0.0 88% HQ234500.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12947 13015 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12861 12861 97% 0.0 89% KF383121.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 10900 18324 100% 0.0 99% KX576684.1 Edited August 12, 2016 by niman Link to comment Share on other sites More sharing options...
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