niman Posted October 27, 2016 Report Share Posted October 27, 2016 Research Institute for Tropical Medicine in the Philippines released a partial sequence from 2016 Zika isolate which was most closely related to 2012 sequence from the Philippines. Link to comment Share on other sites More sharing options...
niman Posted October 27, 2016 Author Report Share Posted October 27, 2016 LOCUS KY003152 1862 bp RNA linear VRL 25-OCT-2016 DEFINITION Zika virus isolate ZIKV/Homo sapiens/PHL/2016/ZK16-0128 envelope protein E gene, partial cds. ACCESSION KY003152 VERSION KY003152.1 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1862) AUTHORS Foronda,J.L.M. and Sy,A.K.D. TITLE Zika outbreak in the Philippines, 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1862) AUTHORS Foronda,J.L.M. and Sy,A.K.D. TITLE Direct Submission JOURNAL Submitted (17-OCT-2016) Virology, Research Institute for Tropical Medicine, 9002 Research Drive, Filinvest Corporate City, Alabang, Muntinlupa City, Metro Manila 1781, Philippines COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1862 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Homo sapiens/PHL/2016/ZK16-0128" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Philippines: Iloilo City" /collection_date="01-Sep-2016" CDS <1..>1862 /codon_start=1 /product="envelope protein E" /protein_id="AOX24134.1" /translation="GTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHL IRVENWIFRNPGFALAAAAIAWLLGSSTSQKVIYLVMILLIAPAYSIRCIGVSNRDFV EGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMAS DSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGK SIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSL GLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVE FKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKG VSYSLCAAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLIT ANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGA KRMAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLG LNTKNGSISLACLALGGVLIFLSTAVSADVGCSVDFSKKETRCGTGVFVYNDVEA" ORIGIN 1 ggaacctgcc accacaaaaa aggtgaagca cggagatcta gaagagctgt gacgctcccc 61 tcccattcca ctaggaagct gcaaacgcgg tcgcagacct ggttggaatc aagagaatac 121 acaaagcacc tgattagagt cgagaattgg atattcagga accccggctt cgcgttagca 181 gcagctgcca tcgcttggct tttgggaagt tcaacgagcc aaaaagtcat atatttggtc 241 atgatactgc tgattgcccc ggcatacagc atcaggtgca taggagtcag caatagggac 301 tttgtggaag gtatgtcagg tgggacttgg gttgatgttg tcttggaaca tggaggctgt 361 gttaccgtaa tggcacagga caaaccgact gtcgacatag agctggttac aacaacagtt 421 agcaacatgg cggaggtaag atcctactgc tatgaggcat caatatcgga tatggcttcg 481 gacagccgct gcccaacaca aggtgaggcc taccttgaca agcagtcaga cactcaatat 541 gtctgcaaaa gaacgttagt ggatagaggc tggggaaatg gatgtggact ttttggaaaa 601 gggagcctgg tgacatgcgc taagtttgca tgctccaaga aaatgaccgg gaagagcatc 661 cagccagaga acctggagta ccggataatg ctgtcagttc atggctccca gcacagtggg 721 atgatcgtta atgacacagg acatgaaact gatgagaata gagcgaaggt tgagataacg 781 cccaattcac caagagccga agccaccctg gggggttttg gaagcctagg acttgattgt 841 gaaccgagga caggccttga cttttcagat ttgtattacc tgactatgaa taacaagcac 901 tggttggttc acaaggagtg gttccacgac attccattac cttggcatgc tggggcagac 961 actggaactc cacattggaa caacaaagaa gcactggtag agttcaagga cgcacatgcc 1021 aaaaggcaaa ctgtcgtggt tctagggagt caagaaggag cagttcacac ggcccttgct 1081 ggagctctgg aggctgagat ggatggtgca aagggaaggc tgtcctctgg ccacttgaaa 1141 tgtcgcctga aaatggataa actcagattg aagggtgtgt catactcctt gtgtgctgca 1201 gcgttcacat tcaccaagat cccggctgaa acactgcacg ggacagtcac agtggaggta 1261 cagtacgcag ggacagatgg accttgcaag gttccagctc agatggcggt ggatatgcaa 1321 actctgaccc cagttgggag gttgataacc gctaaccctg taatcactga aagcaccgag 1381 aactctaaga tgatgctgga acttgatcca ccatttgggg actcttacat tgtcatagga 1441 gtcggggaga agaagatcac ccaccactgg cacaggagtg gcagcaccat tggaaaagca 1501 tttgaagcca ctgtgagagg tgccaagaga atggcagtct tgggagacac agcctgggac 1561 tttggatcag ttggaggtgc tctcaactca ttgggcaagg gcatccatca aatttttgga 1621 gcagctttca aatcattgtt tggaggaatg tcctggttct cacaaattct catcggaacg 1681 ttgctggtgt ggttgggtct gaatacaaag aatggatcta tttcccttgc atgcttggct 1741 ttagggggag tgttgatctt cttatccaca gccgtctctg ctgatgtggg gtgctcggtg 1801 gacttctcaa agaaggaaac gagatgcggt acaggggtgt tcgtctataa cgacgttgaa 1861 gc Link to comment Share on other sites More sharing options...
niman Posted October 27, 2016 Author Report Share Posted October 27, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 3241 3241 100% 0.0 99% KU681082.3 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 3200 3200 100% 0.0 98% EU545988.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 3196 3196 100% 0.0 98% KX447521.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 3196 3196 100% 0.0 98% KX447517.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 3196 3196 100% 0.0 98% KX447509.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 3196 3196 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 3196 3196 100% 0.0 98% JN860885.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 3191 3191 100% 0.0 98% KJ776791.2 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 3191 3191 100% 0.0 98% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 3191 3191 100% 0.0 98% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 3191 3191 100% 0.0 98% KX447518.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 3191 3191 100% 0.0 98% KX447516.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 3191 3191 100% 0.0 98% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 3191 3191 100% 0.0 98% KX447510.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 3191 3191 100% 0.0 98% KU758877.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 3191 3191 100% 0.0 98% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 3191 3191 100% 0.0 98% KU758870.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 3191 3191 100% 0.0 98% KX262887.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 3191 3191 100% 0.0 98% KU870645.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 3189 3189 100% 0.0 98% KY014315.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 3187 3187 100% 0.0 98% KX856011.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 3187 3187 100% 0.0 98% KX694534.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 3187 3187 100% 0.0 98% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 3187 3187 100% 0.0 98% KX447514.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 3187 3187 100% 0.0 98% KU758873.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 3187 3187 100% 0.0 98% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 3187 3187 100% 0.0 98% KU937936.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 3187 3187 100% 0.0 98% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 3187 3187 100% 0.0 98% KU509998.3 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 3187 3187 100% 0.0 98% KU365778.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 3187 3187 100% 0.0 98% KU312314.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 3182 3182 100% 0.0 98% KY014317.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 3182 3182 100% 0.0 98% KY014306.1 Select seq gb|KY014301.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ107D1-URI polyprotein gene, complete cds 3182 3182 100% 0.0 98% KY014301.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 3182 3182 100% 0.0 98% KX806557.2 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 3182 3182 100% 0.0 98% KX879604.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 3182 3182 100% 0.0 98% KX197205.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 3182 3182 100% 0.0 98% KX447511.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 3182 3182 100% 0.0 98% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 3182 3182 100% 0.0 98% KX369547.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 3182 3182 100% 0.0 98% KX446951.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 3182 3182 100% 0.0 98% KU758868.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 3182 3182 100% 0.0 98% KX280026.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 3182 3182 100% 0.0 98% KX197192.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 3182 3182 100% 0.0 98% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 3182 3182 100% 0.0 98% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 3182 3182 100% 0.0 98% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 3182 3182 100% 0.0 98% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 3182 3182 100% 0.0 98% KU321639.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 3180 3180 100% 0.0 98% KY014310.1 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 3180 3180 99% 0.0 98% KY014307.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 3180 3180 100% 0.0 98% KY014297.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 3180 3180 100% 0.0 98% KX766028.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 3178 3178 100% 0.0 98% KY014327.1 Select seq gb|KY014319.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME38-PLA polyprotein gene, complete cds 3178 3178 100% 0.0 98% KY014319.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 3178 3178 100% 0.0 98% KY014304.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 3178 3178 100% 0.0 98% KX922707.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 3178 3178 100% 0.0 98% KX879603.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 3178 3178 100% 0.0 98% KX766029.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 3178 3178 100% 0.0 98% KX447512.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 3178 3178 100% 0.0 98% KX266255.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 3178 3178 100% 0.0 98% KX446950.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 3178 3178 100% 0.0 98% KX377337.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU866423.2 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 3178 3178 100% 0.0 98% KU758872.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 3178 3178 100% 0.0 98% KU758869.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 3178 3178 100% 0.0 98% KX253996.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KX185891.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 3178 3178 100% 0.0 98% KX117076.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU963796.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU991811.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 3178 3178 100% 0.0 98% KU940228.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 3178 3178 100% 0.0 98% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU501216.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 3178 3178 100% 0.0 98% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 3178 3178 100% 0.0 98% KU365777.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 3177 3177 100% 0.0 98% KY014309.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 3173 3173 100% 0.0 98% KY014321.1 Select seq gb|KY014316.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-039-URI polyprotein gene, complete cds 3173 3173 100% 0.0 98% KY014316.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 3173 3173 100% 0.0 98% KY014300.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 3173 3173 100% 0.0 98% LC190723.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 3173 3173 100% 0.0 98% KX811222.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 3173 3173 100% 0.0 98% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 3173 3173 100% 0.0 98% KX520666.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 3173 3173 100% 0.0 98% KU758876.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 3173 3173 100% 0.0 98% KU758875.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 3173 3173 100% 0.0 98% KX087101.2 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 3173 3173 100% 0.0 98% KU926309.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 3173 3173 100% 0.0 98% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 3173 3173 100% 0.0 98% KU853012.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 3173 3173 100% 0.0 98% KU681081.3 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 3173 3173 100% 0.0 98% KU497555.1 Select seq gb|KY014326.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-038-URI polyprotein gene, complete cds 3169 3169 100% 0.0 98% KY014326.1 Select seq gb|KY014324.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-01-MOS polyprotein gene, complete cds 3169 3169 100% 0.0 98% KY014324.1 Select seq gb|KY014323.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-02-MOS polyprotein gene, complete cds 3169 3169 100% 0.0 98% KY014323.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 3169 3169 100% 0.0 98% KY014322.1 Select seq gb|KY014298.1| Zika virus isolate Zika virus/H.sapiens-wt/USA/2016/FL-032-URI polyprotein gene, complete cds 3169 3169 100% 0.0 98% KY014298.1 Link to comment Share on other sites More sharing options...
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