niman Posted December 17, 2016 Report Share Posted December 17, 2016 (edited) Wuhan Institute of Virology has released full 2016 sequences (at GISAID) from an H5N8 outbreak at Qinghai Lake in May. Although this outbreak is not listed in OIE reports, the 48 sequences at GISAID suggest it was large and had a significant impact on bar-headed geese (on a par with the 2005 outbreak at Qinghai Lake). Edited December 17, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 A/Great Black-headed Gull/Qinghai/YO1-B/2016 EPI_ISL_224752 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 EPI_ISL_224751 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 EPI_ISL_224750 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 EPI_ISL_224749 H5N8 egg1 2340 2328 2200 1704 --- 1413 1011 838 --- --- 2016-05-15 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 EPI_ISL_224741 H5N8 egg1 2340 2328 2200 --- 1559 1413 1011 838 --- --- 2016-05-15 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 EPI_ISL_224740 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Bar-headed Goose/Qinghai/BTY18-B/2016 EPI_ISL_224739 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 EPI_ISL_224738 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Bar-headed Goose/Qinghai/BTY17-B/2016 EPI_ISL_224737 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-15 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 EPI_ISL_224748 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 EPI_ISL_224747 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 EPI_ISL_224736 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY16-B/2016 EPI_ISL_224735 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 EPI_ISL_224734 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY15-B/2016 EPI_ISL_224733 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 EPI_ISL_224732 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY14-B/2016 EPI_ISL_224731 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 EPI_ISL_224730 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY13-B/2016 EPI_ISL_224729 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-14 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 EPI_ISL_224728 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-13 A/Bar-headed Goose/Qinghai/BTY12-B/2016 EPI_ISL_224727 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-13 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 EPI_ISL_224745 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 EPI_ISL_224744 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY5-B/2016 EPI_ISL_224713 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 EPI_ISL_224712 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY4-B/2016 EPI_ISL_224711 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 EPI_ISL_224710 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY3-B/2016 EPI_ISL_224709 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 EPI_ISL_224708 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Bar-headed Goose/Qinghai/BTY2-B/2016 EPI_ISL_224707 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-12 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 EPI_ISL_224746 H5N8 egg1 2340 2328 2201 1704 1559 1413 1011 838 --- --- 2016-05-11 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 EPI_ISL_224718 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-11 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 EPI_ISL_224717 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-11 A/Bar-headed Goose/Qinghai/BTY7-B/2016 EPI_ISL_224716 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-11 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 EPI_ISL_224715 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-11 A/Bar-headed Goose/Qinghai/BTY6-B/2016 EPI_ISL_224714 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-11 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 EPI_ISL_224720 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-10 A/Bar-headed Goose/Qinghai/BTY8-B/2016 EPI_ISL_224719 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-10 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 EPI_ISL_224726 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY11-B/2016 EPI_ISL_224725 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 EPI_ISL_224724 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY10-B/2016 EPI_ISL_224723 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 EPI_ISL_224722 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY9-B/2016 EPI_ISL_224721 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 EPI_ISL_224705 H5N8 egg1 2340 2328 2200 1704 1559 --- 1011 838 --- --- 2016-05-09 A/Bar-headed Goose/Qinghai/BTY1-B/2016 EPI_ISL_224704 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-09 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 EPI_ISL_224743 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-01 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 EPI_ISL_224742 H5N8 egg1 2340 2328 2200 1704 1559 1413 1011 838 --- --- 2016-05-01 Â Link 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niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Isolate name:  A/Great Black-headed Gull/Qinghai/YO1-B/2016   Isolate ID:  EPI_ISL_224752   Passage details/history:  egg1   Type:  A / H5N8   Lineage:   Sample information  Collection date:  2016-05-15   Host  Larus ichthyaetus   Additional host information:     Domestic status:  Wild   Is vaccinated:  N   Location:  China / Qinghai Province   Additional location information:     Health status:  Sick   Specimen source:  Organ   Strain or commercial product name used for vaccination:     Institute information  Originating lab:  State Key Laboratory of Virology and Wuhan Institute of Virology, Chinese Academy of Sciences  Sample ID given by the sample provider:     Address:  State Key Laboratory of Virology and Wuhan Institute of Virology, Chinese Academy of Sciences Xiao Hong Shan, Wuhan China  Submitting lab:  Wuhan Institute of Virology  Sample ID given by the submitting laboratory:     Authors:    Address:  Wuhan Institute of Virology Chinese Academy of Sciences 44 Xiaohongshan, Wuhan 430071 China  Publication Publication  In vivo antiviral resistance  Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures  Adamantanes:  Unknown   Oseltamivir:  Unknown   Zanamivir:  Unknown   Peramivir:  Unknown   Other:  Unknown                                                         Additional information Antigenic characterization:     Note:     Sequence  segment identifier length accession # INSDC Sequence  PB2  A/Great Black-headed Gull/Qinghai/YO1-B/2016  2340  EPI774503      PB1  A/Great Black-headed Gull/Qinghai/YO1-B/2016  2328  EPI782721      PA  A/Great Black-headed Gull/Qinghai/YO1-B/2016  2200  EPI774505      HA  A/Great Black-headed Gull/Qinghai/YO1-B/2016  1704  EPI774506      NP  A/Great Black-headed Gull/Qinghai/YO1-B/2016  1559  EPI774507      NA  A/Great Black-headed Gull/Qinghai/YO1-B/2016  1413  EPI774508      MP  A/Great Black-headed Gull/Qinghai/YO1-B/2016  1011  EPI774509      NS  A/Great Black-headed Gull/Qinghai/YO1-B/2016  838  EPI774510     Submitter information  Submitter:  Chen, Jianjun    Submission Date:  2016-07-12   Last modifier:  Chen, Jianjun    Last modified:  2016-07-21   Address:  Wuhan Institute of Virology Chinese Academy of Sciences 44 Xiaohongshan, Wuhan 430071 China Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3114.6 0.000000e+00 1698/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1698/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1693/1705 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2987.2 0.000000e+00 1675/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2987.2 0.000000e+00 1675/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2976.1 0.000000e+00 1673/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2965.0 0.000000e+00 1671/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1669/1704 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1667/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1665/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1661/1704 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2905.9 0.000000e+00 1659/1702 (97%) EPI749889 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1661/1705 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1659/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1660/1706 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2889.3 0.000000e+00 1594/1609 (99%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2887.4 0.000000e+00 1657/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1658/1706 (97%) EPI593747 A/goose/Shandong/k1201/2009 (A/H5N1) segment 4 (HA) 2876.4 0.000000e+00 1655/1704 (97%) EPI442017 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 4 (HA) 2876.4 0.000000e+00 1655/1704 (97%) EPI643147 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 4 (HA) 2867.1 0.000000e+00 1650/1706 (96%) EPI703594 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 4 (HA) 2865.3 0.000000e+00 1654/1705 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1401/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1401/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1400/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1402/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1401/1407 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1393/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1392/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2514.4 0.000000e+00 1391/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1389/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2492.3 0.000000e+00 1387/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1383/1406 (98%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2459.0 0.000000e+00 1381/1406 (98%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2453.5 0.000000e+00 1380/1406 (98%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2447.9 0.000000e+00 1379/1406 (98%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2447.9 0.000000e+00 1379/1406 (98%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2447.9 0.000000e+00 1379/1406 (98%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1377/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1378/1407 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1378/1407 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2431.3 0.000000e+00 1376/1406 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2412.8 0.000000e+00 1354/1378 (98%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1361/1398 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2370.4 0.000000e+00 1357/1394 (97%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2359.3 0.000000e+00 1356/1395 (97%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1363/1407 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2348.2 0.000000e+00 1361/1406 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1360/1406 (96%) EPI703639 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1360/1406 (96%) EPI703637 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1360/1406 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2586.4 0.000000e+00 1404/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1401/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1401/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1400/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1402/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1401/1407 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1393/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1392/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2514.4 0.000000e+00 1391/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1389/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2492.3 0.000000e+00 1387/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1383/1406 (98%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2459.0 0.000000e+00 1381/1406 (98%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2453.5 0.000000e+00 1380/1406 (98%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2447.9 0.000000e+00 1379/1406 (98%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2447.9 0.000000e+00 1379/1406 (98%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2447.9 0.000000e+00 1379/1406 (98%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1377/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1378/1407 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1378/1407 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2431.3 0.000000e+00 1376/1406 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2412.8 0.000000e+00 1354/1378 (98%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1361/1398 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2370.4 0.000000e+00 1357/1394 (97%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2359.3 0.000000e+00 1356/1395 (97%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1363/1407 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2348.2 0.000000e+00 1361/1406 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1360/1406 (96%) EPI703639 A/goose/Eastern China/L1204/2012 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1360/1406 (96%) EPI703637 A/goose/Eastern China/L1214/2012 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1360/1406 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1794.2 0.000000e+00 975/977 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 977/983 (99%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 975/983 (99%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 975/983 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 968/978 (98%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1705.6 0.000000e+00 962/982 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1703.7 0.000000e+00 962/982 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602377 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602370 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI602352 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774503 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI774239 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI774231 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI774173 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI774110 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI774383 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI774182 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI774147 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI774118 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI774463 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI774391 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI774307 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI774299 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI774165 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2278/2281 (99%) EPI774156 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI774472 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 1 (PB2) 4189.3 0.000000e+00 2276/2280 (99%) EPI774315 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI774198 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI774127 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI774495 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774455 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774447 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774439 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774349 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774332 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774323 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774274 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774215 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774207 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774190 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774139 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI774487 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774480 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774431 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774416 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774407 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774399 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774375 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774366 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774358 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774341 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774291 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774264 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774248 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI773754 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI774423 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI774283 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI774256 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI774223 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI836611 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI823745 A/wild duck/Tyva/35/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI858841 A/painted stork/India/10CA03/2016 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI836603 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI823753 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI823457 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI858833 A/duck/India/10CA01/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI704256 A/duck/Mongolia/30/2015 (A/H3N8) segment 1 (PB2) 4023.1 0.000000e+00 2246/2280 (98%) EPI704541 A/duck/Mongolia/742/2015 (A/H10N7) segment 1 (PB2) 4017.6 0.000000e+00 2245/2280 (98%) EPI704419 A/duck/Mongolia/655/2015 (A/H2N3) segment 1 (PB2) 4017.6 0.000000e+00 2245/2280 (98%) EPI704385 A/duck/Mongolia/482/2015 (A/H2N3) segment 1 (PB2) 4012.0 0.000000e+00 2244/2280 (98%) EPI704280 A/duck/Mongolia/118/2015 (A/H4N6) segment 1 (PB2) 4006.5 0.000000e+00 2243/2280 (98%) EPI704403 A/duck/Mongolia/521/2015 (A/H3N8) segment 1 (PB2) 3978.8 0.000000e+00 2238/2280 (98%) EPI469157 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI806627 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 1 (PB2) 3917.9 0.000000e+00 2229/2282 (97%) EPI823896 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%) EPI704288 A/duck/Mongolia/127/2015 (A/H4N6) segment 1 (PB2) 3901.2 0.000000e+00 2225/2281 (97%) EPI704264 A/duck/Mongolia/101/2015 (A/H4N6) segment 1 (PB2) 3901.2 0.000000e+00 2225/2281 (97%) EPI683169 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI683168 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI617754 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 1 (PB2) 3890.2 0.000000e+00 2222/2280 (97%) EPI704394 A/duck/Mongolia/520/2015 (A/H1N1) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI845250 A/environment/Sichuan/315068/2015 (A/H6N2) segment 1 (PB2) 3851.4 0.000000e+00 2215/2280 (97%) EPI845251 A/environment/Sichuan/315069/2015 (A/H6N2) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI692341 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI692333 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 1 (PB2) 3845.8 0.000000e+00 2214/2280 (97%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 3842.2 0.000000e+00 2213/2280 (97%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI584398 A/duck/Hunan/S3137/2009 (A/H10N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI527588 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 1 (PB2) 3840.3 0.000000e+00 2213/2280 (97%) EPI335395 A/aquatic bird/Korea/CN9/2009 (A/H6N8) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%) EPI527576 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%) EPI399891 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3834.8 0.000000e+00 2213/2281 (97%) EPI335411 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%) EPI314734 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3834.8 0.000000e+00 2213/2281 (97%) EPI704435 A/duck/Mongolia/777/2015 (A/H3N8) segment 1 (PB2) 3829.2 0.000000e+00 2211/2280 (96%) EPI527590 A/ruddy shelduck/Mongolia/1209/2010 (A/H7N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI527561 A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI469227 A/duck/Jiangxi/16769/2010 (A/H7N7) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI469226 A/duck/Jiangxi/16736/2010 (A/H7N3) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI469225 A/duck/Jiangxi/16326/2010 (A/H7N7) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI469143 A/duck/Jiangxi/16285/2010 (A/H7N3) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI863862 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 1 (PB2) 3820.0 0.000000e+00 2209/2280 (96%) EPI527565 A/ruddy shelduck/Mongolia/1189/2010 (A/H7N1) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%) EPI469228 A/duck/Jiangxi/21980/2010 (A/H7N7) segment 1 (PB2) 3818.1 0.000000e+00 2209/2280 (96%) EPI527569 A/ruddy shelduck/Mongolia/436/2010 (A/H7N1) segment 1 (PB2) 3812.6 0.000000e+00 2209/2281 (96%) EPI527546 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI469175 A/northern shoveler/Hong Kong/MPL133/2010 (A/H2N9) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4178.2 0.000000e+00 2266/2268 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2263/2268 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2266/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4076.7 0.000000e+00 2251/2274 (98%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4076.7 0.000000e+00 2251/2274 (98%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4073.0 0.000000e+00 2250/2274 (98%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4071.1 0.000000e+00 2250/2275 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3945.6 0.000000e+00 2228/2274 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3940.0 0.000000e+00 2227/2274 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3917.9 0.000000e+00 2223/2274 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3917.9 0.000000e+00 2224/2275 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3912.3 0.000000e+00 2223/2275 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3901.2 0.000000e+00 2221/2275 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3884.6 0.000000e+00 2215/2271 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3868.0 0.000000e+00 2215/2275 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3860.6 0.000000e+00 2202/2258 (97%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3851.4 0.000000e+00 2212/2275 (97%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3851.4 0.000000e+00 2211/2274 (97%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%) EPI602380 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 2 (PB1) 3845.8 0.000000e+00 2212/2276 (97%) EPI372392 A/Egyptian goose/Egypt/05588-NAMRU3/2006 (A/H7N7) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%) EPI372353 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI602453 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%) EPI602446 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 2 (PB1) 3840.3 0.000000e+00 2211/2276 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774505 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI774241 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%) EPI774233 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 3 (PA) 3967.7 0.000000e+00 2150/2151 (99%) EPI774393 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI774184 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI774120 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI774112 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI774385 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774309 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774301 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774258 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774250 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774167 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774158 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774149 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI774474 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%) EPI774465 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 3 (PA) 3951.1 0.000000e+00 2147/2151 (99%) EPI774175 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI773756 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI774489 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774482 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774433 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774425 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774377 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774334 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774293 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774285 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774225 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774217 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774209 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI774497 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774457 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774449 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774441 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774343 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774276 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774266 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774200 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774192 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774141 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774131 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI774368 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI774351 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI774325 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI774317 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI836613 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI836605 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI823755 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI823747 A/wild duck/Tyva/35/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI823459 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI774418 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI774409 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI774401 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI774360 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI858835 A/duck/India/10CA01/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI515113 A/muscovy duck/Vietnam/LBM529/2013 (A/H3N8) segment 3 (PA) 3840.3 0.000000e+00 2127/2151 (98%) EPI704445 A/duck/Mongolia/996/2015 (A/H3N8) segment 3 (PA) 3812.6 0.000000e+00 2122/2151 (98%) EPI704282 A/duck/Mongolia/118/2015 (A/H4N6) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%) EPI704306 A/duck/Mongolia/154/2015 (A/H0N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%) EPI693713 A/duck/Mongolia/66/2015 (A/H10N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%) EPI704502 A/duck/Mongolia/326/2015 (A/H10N3) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%) EPI704480 A/duck/Mongolia/245/2015 (A/H10N3) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%) EPI704298 A/duck/Mongolia/141/2015 (A/H0N2) segment 3 (PA) 3790.4 0.000000e+00 2118/2151 (98%) EPI704429 A/duck/Mongolia/769/2015 (A/H4N6) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI704397 A/duck/Mongolia/520/2015 (A/H1N1) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI693697 A/duck/Mongolia/20/2015 (A/H3N8) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI704266 A/duck/Mongolia/101/2015 (A/H4N6) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI704290 A/duck/Mongolia/127/2015 (A/H4N6) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI866092 A/duck/Korea/ES2/2016(H5N6) (A/H5N6) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%) EPI866131 A/mandarin duck/Korea/WB246/2016(H5N6) (A/H5N6) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%) EPI866084 A/chicken/Korea/HN1/2016(H5N6) (A/H5N6) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%) EPI614278 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI614253 A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI614284 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI377637 A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI614286 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI614298 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA) 3651.9 0.000000e+00 2094/2152 (97%) EPI493025 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA) 3607.6 0.000000e+00 2085/2151 (96%) EPI692567 A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA) 3602.1 0.000000e+00 2084/2151 (96%) EPI363462 A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA) 3591.0 0.000000e+00 2082/2151 (96%) EPI363470 A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA) 3579.9 0.000000e+00 2080/2151 (96%) EPI316751 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA) 3579.9 0.000000e+00 2080/2151 (96%) EPI296255 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA) 3579.9 0.000000e+00 2081/2152 (96%) EPI118295 A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA) 3579.9 0.000000e+00 2080/2151 (96%) EPI749127 A/environment/Chongqing/02412/2012 (A/H5N1) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI614294 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 3 (PA) 3574.4 0.000000e+00 2080/2152 (96%) EPI363454 A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI296257 A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI268817 A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI262642 A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI262641 A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI118289 A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI773764 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA) 3568.8 0.000000e+00 2078/2151 (96%) EPI262643 A/aquatic bird/Korea/w79/2005 (A/H5N2) segment 3 (PA) 3568.8 0.000000e+00 2078/2151 (96%) EPI140261 A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA) 3568.8 0.000000e+00 2078/2151 (96%) EPI538470 A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI538433 A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI387412 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI363534 A/duck/Guizhou/2773/2006 (A/H6N2) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI360053 A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774507 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI774243 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI774476 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774387 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774311 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774303 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774260 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774186 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774169 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774160 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774122 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774114 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI774467 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI774252 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI774177 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI774151 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI836615 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI836607 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI823757 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI823749 A/wild duck/Tyva/35/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI823461 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI774395 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1494/1498 (99%) EPI773758 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI774235 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI774499 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774491 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774435 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774419 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774411 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774379 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774370 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774345 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774319 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774227 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774219 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774211 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774143 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI774451 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774443 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774362 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774353 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774336 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774295 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774287 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774278 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774269 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI774459 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI774427 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI774403 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI774202 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI774194 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI774134 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI774327 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI704373 A/duck/Mongolia/211/2015 (A/H3N8) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI704365 A/duck/Mongolia/208/2015 (A/H3N8) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI704316 A/duck/Mongolia/167/2015 (A/H3N8) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI693707 A/duck/Mongolia/83/2015 (A/H3N8) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI693699 A/duck/Mongolia/20/2015 (A/H3N8) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI683033 A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI683032 A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI438282 A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI601644 A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%) EPI601635 A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%) EPI601705 A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%) EPI618038 A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%) EPI618025 A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%) EPI617996 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%) EPI470398 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP) 2627.1 0.000000e+00 1472/1497 (98%) EPI703486 A/duck/Anhui/FA258/2013 (A/H1N3) segment 5 (NP) 2625.2 0.000000e+00 1471/1496 (98%) EPI446508 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP) 2623.4 0.000000e+00 1471/1497 (98%) EPI704357 A/duck/Mongolia/200/2015 (A/H3N8) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI617869 A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI601836 A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI596635 A/duck/Quang Ninh/14/2013 (A/H3N6) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI493029 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI461630 A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP) 2621.5 0.000000e+00 1471/1497 (98%) EPI683042 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP) 2616.0 0.000000e+00 1471/1498 (98%) EPI599810 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP) 2616.0 0.000000e+00 1470/1497 (98%) EPI703477 A/duck/Yunan/V286/2012 (A/H1N2) segment 5 (NP) 2614.1 0.000000e+00 1469/1496 (98%) EPI703476 A/duck/Fujian/JF47/2014 (A/H1N1) segment 5 (NP) 2614.1 0.000000e+00 1469/1496 (98%) EPI692489 A/duck/Hubei/S2213/2012 (A/H4N2) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%) EPI683035 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%) EPI617770 A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%) EPI596424 A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%) EPI591918 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP) 2610.4 0.000000e+00 1469/1497 (98%) EPI407865 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP) 2606.7 0.000000e+00 1468/1497 (98%) EPI683037 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI683036 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI664214 A/duck/Jiangxi/01.14 NCJD034-P/2015(Mixed) (A/H5N6) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI617968 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI602343 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI591924 A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI591912 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI590035 A/duck/Quang Ninh/220/2014 (A/H3N2) segment 5 (NP) 2604.9 0.000000e+00 1468/1497 (98%) EPI841764 A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) EPI806631 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) EPI704537 A/duck/Mongolia/709/2015 (A/H10N7) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) EPI704529 A/duck/Mongolia/626/2015 (A/H10N7) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) EPI704512 A/duck/Mongolia/499/2015 (A/H10N7) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) EPI704447 A/duck/Mongolia/996/2015 (A/H3N8) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 17, 2016 Author Report Share Posted December 17, 2016 Align Segment-ID Name Score E-Value Identity EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1506.1 0.000000e+00 828/835 (99%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1502.4 0.000000e+00 828/838 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 828/837 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 828/837 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 826/839 (98%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 823/838 (98%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 823/838 (98%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 823/839 (98%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 821/837 (98%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 821/837 (98%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 821/837 (98%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 820/837 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1450.7 0.000000e+00 820/837 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1428.6 0.000000e+00 816/837 (97%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1426.7 0.000000e+00 817/839 (97%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1423.0 0.000000e+00 816/838 (97%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1423.0 0.000000e+00 816/838 (97%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1412.0 0.000000e+00 813/837 (97%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1412.0 0.000000e+00 813/837 (97%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1412.0 0.000000e+00 813/837 (97%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1412.0 0.000000e+00 813/837 (97%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) EPI387496 A/pintail/Mongolia/2-65/2007 (A/H3N8) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) EPI363934 A/duck/Guizhou/1560/2007 (A/H6N8) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) EPI314535 A/avian/Japan/8KI0184/2008 (A/H4N6) segment 8 (NS) 1406.4 0.000000e+00 812/837 (97%) Link to comment Share on other sites More sharing options...
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