niman Posted December 26, 2017 Report Share Posted December 26, 2017 H5N6 from December 2017 collections from Great Black-back gulls in the Netherlands match recent H5N6 isolates from Japan and Taiwan. Link to comment Share on other sites More sharing options...
niman Posted December 26, 2017 Author Report Share Posted December 26, 2017 Isolate detail Isolate name: A/Great Black-backed Gull/Netherlands/2/2017 Isolate ID: EPI_ISL_289501 Passage details/history: Original material (OM) Type: A / H5N6 Lineage: Sample information Collection date: 2017-12-18 Host Larus marinus Additional host information: Domestic status: Wild Is vaccinated: Location: Netherlands / Provincie Noord-Holland Additional location information: Health status: Dead Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Erasmus Medical Center Sample ID given by the sample provider: 320-161 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Submitting lab: Erasmus Medical Center Sample ID given by the submitting laboratory: 320-161 Authors: Poen,MJ; Van Der Jeugd,HP; Kelder,L; Scheuer,RD; Bestebroer,TM; Koopmans,MPG; Fouchier,RAM Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/Great Black-backed Gull/Netherlands/2/2017 1644 EPI1129919 NA A/Great Black-backed Gull/Netherlands/2/2017 1339 EPI1129918 Submitter information Submitter: Poen, Maria Johanna Submission Date: 2017-12-22 Last modifier: Poen, Maria Johanna Last modified: 2017-12-22 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Link to comment Share on other sites More sharing options...
niman Posted December 26, 2017 Author Report Share Posted December 26, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129919 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 4 (HA) 3037.0 0.000000e+00 1644/1644 (100%) EPI1129916 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1628/1636 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1632/1644 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 2965.0 0.000000e+00 1631/1644 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 2959.5 0.000000e+00 1630/1644 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 2953.9 0.000000e+00 1629/1644 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1628/1644 (99%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1628/1644 (99%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1627/1644 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 2942.8 0.000000e+00 1627/1644 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1626/1644 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1626/1644 (98%) EPI978865 A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1625/1644 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1625/1644 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1625/1644 (98%) EPI1061370 A/Brahma chicken/Belgium/6153/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1021132 A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI964917 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI954837 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) EPI909412 A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1625/1644 (98%) Link to comment Share on other sites More 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niman Posted December 26, 2017 Author Report Share Posted December 26, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129918 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2473.8 0.000000e+00 1339/1339 (100%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2411.0 0.000000e+00 1315/1320 (99%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2329.7 0.000000e+00 1313/1339 (98%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2326.1 0.000000e+00 1312/1339 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2326.1 0.000000e+00 1312/1339 (97%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2291.0 0.000000e+00 1306/1339 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2279.9 0.000000e+00 1304/1339 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2268.8 0.000000e+00 1304/1341 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1289/1341 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2169.1 0.000000e+00 1286/1341 (95%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2163.5 0.000000e+00 1285/1341 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1276/1342 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2108.1 0.000000e+00 1277/1343 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2102.6 0.000000e+00 1275/1342 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2102.6 0.000000e+00 1275/1342 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2097.1 0.000000e+00 1274/1342 (94%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2097.1 0.000000e+00 1274/1342 (94%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2097.1 0.000000e+00 1274/1342 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2086.0 0.000000e+00 1272/1342 (94%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2086.0 0.000000e+00 1272/1342 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2080.4 0.000000e+00 1271/1342 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2076.8 0.000000e+00 1270/1342 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2076.8 0.000000e+00 1271/1342 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2074.9 0.000000e+00 1270/1342 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2074.9 0.000000e+00 1270/1342 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2069.4 0.000000e+00 1270/1343 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2058.3 0.000000e+00 1268/1343 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2052.7 0.000000e+00 1268/1344 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2047.2 0.000000e+00 1268/1345 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2047.2 0.000000e+00 1266/1343 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2041.7 0.000000e+00 1265/1343 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2036.1 0.000000e+00 1263/1342 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2036.1 0.000000e+00 1264/1343 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2030.6 0.000000e+00 1263/1343 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2030.6 0.000000e+00 1262/1342 (94%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2025.0 0.000000e+00 1264/1345 (93%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2025.0 0.000000e+00 1264/1345 (93%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2025.0 0.000000e+00 1262/1343 (93%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2019.5 0.000000e+00 1262/1344 (93%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 2014.0 0.000000e+00 1263/1346 (93%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1259/1342 (93%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI463388 A/mallard/Sweden/101980/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI463376 A/mallard/Sweden/101310/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI463375 A/mallard/Sweden/101309/2009 (A/H4N6) segment 6 (NA) 2014.0 0.000000e+00 1260/1343 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 2008.4 0.000000e+00 1262/1346 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 2008.4 0.000000e+00 1262/1346 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 2008.4 0.000000e+00 1262/1346 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2008.4 0.000000e+00 1260/1344 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2008.4 0.000000e+00 1258/1342 (93%) EPI463380 A/mallard/Sweden/101617/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI463379 A/mallard/Sweden/101615/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI463370 A/mallard/Sweden/101022/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI463368 A/mallard/Sweden/100955/2009 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2008.4 0.000000e+00 1259/1343 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1257/1342 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1257/1342 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1259/1344 (93%) EPI513184 A/mallard/Sweden/105516/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) EPI513177 A/mallard/Sweden/105137/2009 (A/H4N6) segment 6 (NA) 2002.9 0.000000e+00 1258/1343 (93%) Link to comment Share on other sites More sharing options...
niman Posted December 26, 2017 Author Report Share Posted December 26, 2017 Isolate detail Isolate name: A/Great Black-backed Gull/Netherlands/1/2017 Isolate ID: EPI_ISL_289500 Passage details/history: Original material (swab) Type: A / H5N6 Lineage: Sample information Collection date: 2017-12-18 Host Larus marinus Additional host information: Domestic status: Wild Is vaccinated: Location: Netherlands / Provincie Noord-Holland Additional location information: Health status: Dead Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Erasmus Medical Center Sample ID given by the sample provider: 320-157 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Submitting lab: Erasmus Medical Center Sample ID given by the submitting laboratory: 320-157 Authors: Poen,MJ; Van Der Jeugd,HP; Kelder,L; Scheuer,RD; Bestebroer,TM; Koopmans,MPG; Fouchier,RAM Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/Great Black-backed Gull/Netherlands/1/2017 1639 EPI1129916 NA A/Great Black-backed Gull/Netherlands/1/2017 1322 EPI1129917 Submitter information Submitter: Poen, Maria Johanna Submission Date: 2017-12-22 Last modifier: Poen, Maria Johanna Last modified: 2017-12-22 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Link to comment Share on other sites More sharing options...
niman Posted December 26, 2017 Author Report Share Posted December 26, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129916 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3027.8 0.000000e+00 1639/1639 (100%) EPI1129919 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1628/1636 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 2950.2 0.000000e+00 1625/1639 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1624/1639 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 2939.1 0.000000e+00 1623/1639 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1622/1639 (98%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 2929.9 0.000000e+00 1621/1639 (98%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 2928.1 0.000000e+00 1621/1639 (98%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 2924.4 0.000000e+00 1620/1639 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1620/1639 (98%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 2918.8 0.000000e+00 1619/1639 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1619/1639 (98%) EPI978865 A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA) 2913.3 0.000000e+00 1618/1639 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2913.3 0.000000e+00 1618/1639 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 2913.3 0.000000e+00 1618/1639 (98%) EPI1061370 A/Brahma chicken/Belgium/6153/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1021132 A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI978863 A/grey heron/Germany-TH/R1125/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI964917 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI954837 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1618/1639 (98%) Link to comment Share on other sites 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niman Posted December 26, 2017 Author Report Share Posted December 26, 2017 Descriptions Align Segment-ID Name Score E-Value Identity EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2442.4 0.000000e+00 1322/1322 (100%) EPI1129918 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2411.0 0.000000e+00 1315/1320 (99%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2292.8 0.000000e+00 1295/1322 (97%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2289.1 0.000000e+00 1294/1322 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2289.1 0.000000e+00 1294/1322 (97%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2259.6 0.000000e+00 1289/1322 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2248.5 0.000000e+00 1287/1322 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2231.9 0.000000e+00 1286/1324 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2150.6 0.000000e+00 1269/1321 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1268/1321 (95%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1265/1321 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1256/1322 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2071.2 0.000000e+00 1257/1323 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2065.7 0.000000e+00 1255/1322 (94%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2065.7 0.000000e+00 1255/1322 (94%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2060.1 0.000000e+00 1254/1322 (94%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2060.1 0.000000e+00 1254/1322 (94%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2060.1 0.000000e+00 1254/1322 (94%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2049.1 0.000000e+00 1252/1322 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2043.5 0.000000e+00 1253/1325 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2043.5 0.000000e+00 1251/1322 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2039.8 0.000000e+00 1250/1322 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2039.8 0.000000e+00 1251/1322 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2038.0 0.000000e+00 1250/1322 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2038.0 0.000000e+00 1250/1322 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2038.0 0.000000e+00 1250/1322 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2032.4 0.000000e+00 1249/1322 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2032.4 0.000000e+00 1250/1323 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2021.4 0.000000e+00 1248/1323 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2021.4 0.000000e+00 1248/1323 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2015.8 0.000000e+00 1248/1324 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2010.3 0.000000e+00 1248/1325 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2004.7 0.000000e+00 1245/1323 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 1999.2 0.000000e+00 1243/1322 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 1999.2 0.000000e+00 1244/1323 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 1999.2 0.000000e+00 1244/1323 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 1993.7 0.000000e+00 1243/1323 (93%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 1993.7 0.000000e+00 1242/1322 (93%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1242/1323 (93%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1242/1323 (93%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1244/1325 (93%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 1988.1 0.000000e+00 1244/1325 (93%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 1982.6 0.000000e+00 1242/1324 (93%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 1977.0 0.000000e+00 1243/1326 (93%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1239/1322 (93%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI463388 A/mallard/Sweden/101980/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI463376 A/mallard/Sweden/101310/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI463375 A/mallard/Sweden/101309/2009 (A/H4N6) segment 6 (NA) 1977.0 0.000000e+00 1240/1323 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1242/1326 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1242/1326 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1242/1326 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 1971.5 0.000000e+00 1240/1324 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI475927 A/mallard/Iceland/1007/2011 (A/H3N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 1971.5 0.000000e+00 1238/1322 (93%) EPI463380 A/mallard/Sweden/101617/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI463379 A/mallard/Sweden/101615/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI463370 A/mallard/Sweden/101022/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI463368 A/mallard/Sweden/100955/2009 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 1971.5 0.000000e+00 1239/1323 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1237/1322 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1237/1322 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1238/1323 (93%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1239/1324 (93%) EPI513198 A/mallard/Sweden/124418/2010 (A/H4N6) segment 6 (NA) 1966.0 0.000000e+00 1237/1322 (93%) Link to comment Share on other sites More sharing options...
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