Thailand nCoV Sequences Released At Genbank

[niman]

Partial sequences from orf1ab from Thailand patients released at Genbank.

[niman]

LOCUS       MN970004                 290 bp    RNA     linear   VRL 23-JAN-2020
DEFINITION  Wuhan seafood market pneumonia virus isolate SI200121-SP orf1ab
            polyprotein, RdRP region, (orf1ab) gene, partial cds.
ACCESSION   MN970004
VERSION     MN970004.1
KEYWORDS    .
SOURCE      Wuhan seafood market pneumonia virus
  ORGANISM  Wuhan seafood market pneumonia virus
            Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae;
            Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Buathong,R., Wacharapluesadee,S., Lamsirithawon,S., Chaifoo,W.,
            Ponpinit,T., Joyjinda,Y., Ruchisrisarod,C., Rodpan,A.,
            Sirivichatakul,S., Vachiraphan,A., Plipat,T. and Hemachudha,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2020) Faculty of Medicine, Chulalongkorn
            University, Rama IV Rd, Bangkok 10330, Thailand
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Wuhan seafood market pneumonia virus"
                     /mol_type="genomic RNA"
                     /isolate="SI200121-SP"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="Thailand"
                     /collection_date="13-Jan-2020"
     gene            <1..>290
                     /gene="orf1ab"
     CDS             <1..>290
                     /gene="orf1ab"
                     /note="pp1ab"
                     /codon_start=2
                     /product="orf1ab polyprotein"
                     /protein_id="QHN69983.1"
                     /translation="KHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGF
                     ELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMI"
     mat_peptide     <1..>290
                     /gene="orf1ab"
                     /product="RdRP"
ORIGIN      
        1 taaacacctc ataccactta tgtacaaagg acttccttgg aatgtagtgc gtataaagat
       61 tgtacaaatg ttaagtgaca cacttaaaaa tctctctgac agagtcgtat ttgtcttatg
      121 ggcacatggc tttgagttga catctatgaa gtattttgtg aaaataggac ctgagcgcac
      181 ctgttgtcta tgtgatagac gtgccacatg cttttccact gcttcagaca cttatgcctg
      241 ttggcatcat tctattggat ttgattacgt ctataatccg tttatgattg

[niman]

LOCUS       MN970003                 290 bp    RNA     linear   VRL 23-JAN-2020
DEFINITION  Wuhan seafood market pneumonia virus isolate SI200040-SP orf1ab
            polyprotein, RdRP region, (orf1ab) gene, partial cds.
ACCESSION   MN970003
VERSION     MN970003.1
KEYWORDS    .
SOURCE      Wuhan seafood market pneumonia virus
  ORGANISM  Wuhan seafood market pneumonia virus
            Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae;
            Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Buathong,R., Wacharapluesadee,S., Lamsirithawon,S., Chaifoo,W.,
            Ponpinit,T., Joyjinda,Y., Ruchisrisarod,C., Rodpan,A.,
            Sirivichatakul,S., Vachiraphan,A., Plipat,T. and Hemachudha,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2020) Faculty of Medicine, Chulalongkorn
            University, Rama IV Rd, Bangkok 10330, Thailand
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Wuhan seafood market pneumonia virus"
                     /mol_type="genomic RNA"
                     /isolate="SI200040-SP"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:2697049"
                     /country="Thailand"
                     /collection_date="08-Jan-2020"
     gene            <1..>290
                     /gene="orf1ab"
     CDS             <1..>290
                     /gene="orf1ab"
                     /note="pp1ab"
                     /codon_start=2
                     /product="orf1ab polyprotein"
                     /protein_id="QHN69982.1"
                     /translation="KHLIPLMYKGLPWNVVRIKIVQMLSDTLKNLSDRVVFVLWAHGF
                     ELTSMKYFVKIGPERTCCLCDRRATCFSTASDTYACWHHSIGFDYVYNPFMI"
     mat_peptide     <1..>290
                     /gene="orf1ab"
                     /product="RdRP"
ORIGIN      
        1 taaacacctc ataccactta tgtacaaagg acttccttgg aatgtagtgc gtataaagat
       61 tgtacaaatg ttaagtgaca cacttaaaaa tctctctgac agagtcgtat ttgtcttatg
      121 ggcacatggc tttgagttga catctatgaa gtattttgtg aaaataggac ctgagcgcac
      181 ctgttgtcta tgtgatagac gtgccacatg cttttccact gcttcagaca cttatgcctg
      241 ttggcatcat tctattggat ttgattacgt ctataatccg tttatgattg