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First BA.2.86 Sequence from Maryland USA


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  • 3 weeks later...
Posted

USA/MD-CDC-LC1054598/2023

Maryland

Collected 8/25/23

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

NSP14 N408K

T27134C (M)

Posted (edited)
isolate SARS-CoV-2/Human/USA/MD-CDC-LC1054598/2023
collected by Laboratory Corporation of America
collection date 2023-08-25
isolation source Nasal Swabs
geographic location USA: Maryland
host Homo sapiens
host disease COVID-19
host sex female
host age 59
collection device Nasal Swabs
collection method Nasal Swabs
purpose of sequencing baseline surveillance (random sampling)
host_race Unknown
diagnostic_gene_name_1 N1 gene
diagnostic_pcr_protocol_1 Labcorp LDT
diagnostic_pcr_Ct_value_1 Unknown
diagnostic_gene_name_2 N2 gene
diagnostic_pcr_protocol_2 Labcorp LDT
diagnostic_pcr_Ct_value_2 Unknown
diagnostic_gene_name_3 RP gene
diagnostic_pcr_protocol_3 Labcorp LDT
diagnostic_pcr_Ct_value_3 Unknown
lineage/clade name BA.2.86
BioProject
PRJNA716984 Severe acute respiratory syndrome coronavirus 2
Retrieve all samples from this project
 
Submission
Centers for Disease Control and Prevention; 2023-09-12
Accession: 
SAMN37364111
 ID: 
37364111

SRA Nucleotide

https://www.ncbi.nlm.nih.gov/biosample/37364111

Edited by niman
Posted

USA/MD-CDC-LC1054598/2023

Maryland

Collected 8/25/23

59F

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

NSP14 N408K

T27134C (M)

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