First BA.2.86 Sequence from Oregon USA

[niman]

USA/OR-CDC-VSX-A336453/2023

Oregon

Collected 8/28/23

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

Edited September 16, 2023 by niman

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.33348212929379%2C-123.02937750050495&z=8

[niman]

USA/OR-CDC-VSX-A336453/2023

Oregon

Collected 8/28/23

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.33348212929379%2C-123.02937750050495&z=8

[niman]

isolate	SARS-CoV-2/Human/USA/OR-CDC-VSX-A336453/2023
collected by	Helix
collection date	2023-08-28
isolation source	PrimeStore MTM - Nasal Swab
geographic location	USA: Oregon
host	Homo sapiens
host disease	COVID-19
host sex	female
host age	35
collection device	PrimeStore MTM - Nasal Swab
collection method	PrimeStore MTM - Nasal Swab
purpose of sequencing	baseline surveillance (random sampling)
host_race	White
diagnostic_gene_name_1	N
diagnostic_pcr_protocol_1	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_1	Unknown
diagnostic_gene_name_2	ORF1ab
diagnostic_pcr_protocol_2	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_2	Unknown
diagnostic_gene_name_3	S
diagnostic_pcr_protocol_3	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_3	Unknown
lineage/clade name	BA.2.86 https://www.ncbi.nlm.nih.gov/biosample/SAMN37364437

[niman]

USA/OR-CDC-VSX-A336453/2023

Oregon

Collected 8/28/23

35F

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.33348212929379%2C-123.02937750050495&z=8