First BA.2.86 Sequence from Shanghai ex-Japan

[niman]

Shanghai/SCDC-HG0908-3457/2023

Shanghai

Collected 9/5/23

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NS3 T229I

H/T NkRMnZr

/isolate="SARS-CoV-2/human/CHN/SH-HG20230908-3457/2023"
/isolation_source="Pharyngeal swab"
/host="Homo sapiens; Host_age: 60; Host_sex: Male"
/country="China:Shanghai"
/collection_date="2023-09-05"
/note="Passage_details/history: Original;
Additional_host_information: Patient infected while traveling in Japan"

https://ngdc.cncb.ac.cn/genbase/search/gb/C_AA044469.1

 

 

Edited September 20, 2023 by niman

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=31.180415308799105%2C121.38022119707031&z=12