Thirteenth BA.2.86 Sequence from New York USA

[niman]

USA/NY-CDC-VSX-A336671/2023

New York

9/16/23 collection

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1
NSP2 Y441C

 

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.48325254994279%2C-74.04360621398537&z=9

[niman]

USA/NY-CDC-VSX-A336671/2023

New York

9/16/23 collection

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1
NSP2 Y441C

NSP3 V1932I

NSP14 S221A

NSP14 N408K

NSP15 V69M

T26229C (ORF3a)

T27134C (M)

 

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.86796806544166%2C-74.01614039367287&z=10

[niman]

isolate	SARS-CoV-2/Human/USA/NY-CDC-VSX-A336671/2023
collected by	Helix
collection date	2023-09-16
isolation source	PrimeStore MTM - Nasal Swab
geographic location	USA: New York
host	Homo sapiens
host disease	COVID-19
host sex	male
host age	51
collection device	PrimeStore MTM - Nasal Swab
collection method	PrimeStore MTM - Nasal Swab
purpose of sequencing	baseline surveillance (random sampling)
host_race	White
diagnostic_gene_name_1	N
diagnostic_pcr_protocol_1	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_1	Unknown
diagnostic_gene_name_2	ORF1ab
diagnostic_pcr_protocol_2	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_2	Unknown
diagnostic_gene_name_3	S
diagnostic_pcr_protocol_3	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_3	Unknown
lineage/clade name	BA.2.86

BioProject

PRJNA720050 Severe acute respiratory syndrome coronavirus 2
Retrieve all samples from this project
 

Submission

CDC-OAMD; 2023-10-01

https://www.ncbi.nlm.nih.gov/biosample/37631168

[niman]

USA/NY-CDC-VSX-A336671/2023

New York

9/16/23 collection

51M

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1
NSP2 Y441C

NSP3 V1932I

NSP14 S221A

NSP14 N408K

NSP15 V69M

T26229C (ORF3a)

T27134C (M)

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.775222096681276%2C-73.98867457336037&z=11