Fourteenth BA.2.86 Sequence from New York USA

[niman]

USA/NY-CDC-QDX85192853/2023

New York

9/14/23 collection

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

 

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.9869969163727%2C-73.91728078978205&z=10

Edited October 2, 2023 by niman

[niman]

USA/NY-CDC-QDX85192853/2023

New York

9/14/23 collection

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

NSP14 S221A

NSP14 N408K

NSP15 V69M

T26229C (ORF 3a)

T27134C (M)

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.96468071916506%2C-73.9863571481764&z=10

[niman]

isolate	SARS-CoV-2/Human/USA/NY-CDC-QDX85192853/2023
collected by	Quest Diagnostics Incorporated
collection date	2023-09-14
isolation source	Nasal Swabs
geographic location	USA: New York
host	Homo sapiens
host disease	COVID-19
host sex	male
host age	56
collection device	Nasal Swabs
collection method	Nasal Swabs
purpose of sequencing	baseline surveillance (random sampling)
host_race	Unknown
diagnostic_pcr_protocol_1	Hologic
diagnostic_pcr_Ct_value_1	Unknown
lineage/clade name	BA.2.86

BioProject

PRJNA716985 Severe acute respiratory syndrome coronavirus 2
Retrieve all samples from this project
 

Submission

CDC-OAMD; 2023-10-02

Accession: 

SAMN37639748

 ID: 

37639748

https://www.ncbi.nlm.nih.gov/biosample/SAMN37639748

[niman]

USA/NY-CDC-QDX85192853/2023

New York

9/14/23 collection

56M

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

NSP2 Y441C

NSP14 S221A

NSP14 N408K

NSP15 V69M

T26229C (ORF 3a)

T27134C (M)

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.89189633165002%2C-73.87127765510546&z=11