First BA.2.86 Sequence from Minnesota USA

[niman]

USA/MN-CDC-VSX-A09391/2023

Minnesota

9/20/23 collection

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

 

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=44.82689623248565%2C-93.84855820187934&z=8

[niman]

isolate	SARS-CoV-2/Human/USA/MN-CDC-VSX-A09391/2023
collected by	Helix
collection date	2023-09-20
isolation source	swab
geographic location	USA: Minnesota
host	Homo sapiens
host disease	COVID-19
host sex	female
host age	75
collection device	Swab
collection method	Swab
purpose of sequencing	baseline surveillance (random sampling)
host_race	White
diagnostic_gene_name_1	N
diagnostic_pcr_protocol_1	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_1	Unknown
diagnostic_gene_name_2	ORF1ab
diagnostic_pcr_protocol_2	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_2	Unknown
diagnostic_gene_name_3	S
diagnostic_pcr_protocol_3	Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_3	Unknown
lineage/clade name	BA.2.86

Submission

CDC-OAMD; 2023-10-04

Accession: 

SAMN37669709

 ID: 

37669709

https://www.ncbi.nlm.nih.gov/biosample/SAMN37669709

[niman]

USA/MN-CDC-VSX-A09391/2023

Minnesota

9/20/23 collection

75F

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=44.82689623248565%2C-93.84855820187934&z=8

[niman]

USA/MN-CDC-VSX-A09391/2023

Minnesota

9/20/23 collection

75F

Spike ins16MPLF, V483del

NSP3 K1155R
BA.2.86.1

T3565C (NSP2)

NSP4 D217G

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=44.792124057798986%2C-93.38026596555122&z=11