niman Posted October 6, 2023 Report Share Posted October 6, 2023 USA/NY-CDC-QDX85405100/2023 New York 9/19/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C NSP14 S221A NSP14 N408K NSP15 V69M T26229C (ORF 3a) T27134C (M) Link to comment Share on other sites More sharing options...
niman Posted October 6, 2023 Author Report Share Posted October 6, 2023 map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.61377026465439%2C-73.99949124262409&z=11 Link to comment Share on other sites More sharing options...
niman Posted October 8, 2023 Author Report Share Posted October 8, 2023 isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85405100/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-19 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 50 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-06 Accession: SAMN37701160 ID: 37701160 https://www.ncbi.nlm.nih.gov/biosample/37701160 Link to comment Share on other sites More sharing options...
niman Posted October 8, 2023 Author Report Share Posted October 8, 2023 USA/NY-CDC-QDX85405100/2023 New York 9/19/23 collection 50M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C NSP14 S221A NSP14 N408K NSP15 V69M T26229C (ORF 3a) T27134C (M) Link to comment Share on other sites More sharing options...
niman Posted October 8, 2023 Author Report Share Posted October 8, 2023 map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.576008877527784%2C-73.91360556191405&z=11 Link to comment Share on other sites More sharing options...
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