Second BA.2.86 Sequence from New Jersey USA

[niman]

isolate	SARS-CoV-2/Human/USA/NJ-CDC-QDX85876866/2023
collected by	Quest Diagnostics Incorporated
collection date	2023-10-02
isolation source	Nasal Swabs
geographic location	USA: New Jersey
host	Homo sapiens
host disease	COVID-19
host sex	male
host age	36
collection device	Nasal Swabs
collection method	Nasal Swabs
purpose of sequencing	baseline surveillance (random sampling)
host_race	OTHER RACE
diagnostic_pcr_protocol_1	Roche
diagnostic_pcr_Ct_value_1	18
lineage/clade name	BA.2.86 https://www.ncbi.nlm.nih.gov/biosample/37823401

[niman]

USA/NJ-CDC-QDX85876866/2023

New Jersey

10/2/23 collection

36M

Spike ins16MPLF, V483del

NSP3 K1155R

NSP2 F319L

T3565C (NSP3)

NSP6 R252K

C11747T (NSP6)

C18894T (NSP14)

Spike L455S

NS7b F19L

JN.1

 

[niman]

map update

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.66513002689743%2C-74.75596214755859&z=10