niman Posted October 25, 2023 Report Share Posted October 25, 2023 (edited) USA/VA-CDC-LC1065445/2023 Virginia 10/9/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) C9142T (NSP4) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S JN.1 Edited October 25, 2023 by niman Link to comment Share on other sites More sharing options...
niman Posted October 25, 2023 Author Report Share Posted October 25, 2023 map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=38.70414438333367%2C-77.62549009596212&z=11 Link to comment Share on other sites More sharing options...
niman Posted November 9, 2023 Author Report Share Posted November 9, 2023 isolate SARS-CoV-2/Human/USA/VA-CDC-LC1065445/2023 collected by Laboratory Corporation of America collection date 2023-10-09 isolation source Nasal Swabs geographic location USA: Virginia host Homo sapiens host disease COVID-19 host sex female host age 45 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.994 lineage/clade name BA.2.86 https://www.ncbi.nlm.nih.gov/biosample/SAMN37934951 Link to comment Share on other sites More sharing options...
niman Posted November 9, 2023 Author Report Share Posted November 9, 2023 (edited) USA/VA-CDC-LC1065445/2023 Virginia 45F 10/9/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S JN.1 C9142T (NSP4) Edited November 9, 2023 by niman Link to comment Share on other sites More sharing options...
niman Posted November 9, 2023 Author Report Share Posted November 9, 2023 map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=38.59944674951559%2C-77.66216429083534&z=9 Link to comment Share on other sites More sharing options...
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