niman Posted February 29, 2016 Report Share Posted February 29, 2016 Guangdong Provincial Center for Disease Control and Prevention has released a full sequence from the saliva, GDZ16001, collected on February 12 from a Guangzhou traveler returning from Venezuela. The saliva sequence was virtually identical to a serum sample, GD01,from the same patient. Link to comment Share on other sites More sharing options...
niman Posted February 29, 2016 Author Report Share Posted February 29, 2016 LOCUS KU761564 10401 bp RNA linear VRL 26-FEB-2016 DEFINITION Zika virus isolate GDZ16001 polyprotein gene, complete cds. ACCESSION KU761564 VERSION KU761564.1 GI:1001231706 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10401) AUTHORS Wu,D., Guan,D. and Zhang,H. TITLE Genomic analysis of Zika virus from two Chinese returning to Guangdong, China from Venezuela and Samoa February 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10401) AUTHORS Wu,D., Guan,D. and Zhang,H. TITLE Direct Submission JOURNAL Submitted (26-FEB-2016) Guangdong Provincial Center for Disease Control and Prevention, Institute of Microbiology, No. 160, Qunxian Road, Dashi town, Panyu District, Guangzhou City, Guangdong Province 511430, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10401 /organism="Zika virus" /mol_type="genomic RNA" /isolate="GDZ16001" /isolation_source="saliva" /host="Homo sapiens" /db_xref="taxon:64320" /country="China" /collection_date="12-Feb-2016" /note="type: Asian" Link to comment Share on other sites More sharing options...
niman Posted February 29, 2016 Author Report Share Posted February 29, 2016 LOCUS KU761564 10401 bp RNA linear VRL 26-FEB-2016 DEFINITION Zika virus isolate GDZ16001 polyprotein gene, complete cds. ACCESSION KU761564 VERSION KU761564.1 GI:1001231706 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10401) AUTHORS Wu,D., Guan,D. and Zhang,H. TITLE Genomic analysis of Zika virus from two Chinese returning to Guangdong, China from Venezuela and Samoa February 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10401) AUTHORS Wu,D., Guan,D. and Zhang,H. TITLE Direct Submission JOURNAL Submitted (26-FEB-2016) Guangdong Provincial Center for Disease Control and Prevention, Institute of Microbiology, No. 160, Qunxian Road, Dashi town, Panyu District, Guangzhou City, Guangdong Province 511430, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10401 /organism="Zika virus" /mol_type="genomic RNA" /isolate="GDZ16001" /isolation_source="saliva" /host="Homo sapiens" /db_xref="taxon:64320" /country="China" /collection_date="12-Feb-2016" /note="type: Asian" CDS 49..10320 /codon_start=1 /product="polyprotein" /protein_id="AML82110.1" /db_xref="GI:1001231707" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAVRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNIIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVASCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 cagtatcaac aggttttatt ttggatttgg aaacgagagt ttctggtcat gaaaaaccca 61 aaaaagaaat ccggaggatt ccggattgtc aatatgctaa aacgcggagt agcccgtgtg 121 agcccctttg ggggcttgaa gaggctgcca gccggacttc tgctgggtca tgggcccatc 181 aggatggtct tggcgattct agccttcttg agattcacgg caatcaagcc atcactgggt 241 ctcatcaata gatggggttc agtggggaaa aaagaggcta tggaaataat aaagaagttc 301 aagaaagatc tggctgccat gctgagaata atcaatgcta ggaaggagaa gaagagacga 361 ggcgcagata ctagtgtcgg aattgttggc ctcctgctga ccacagctat ggcagcggag 421 gtcactagac gtgggagtgc atactatatg tacttggaca gaaacgatgc tggggaggcc 481 atatcttttc caaccacatt ggggatgaat aagtgttata tacagatcat ggatcttgga 541 cacatgtgtg atgccaccat gagctatgaa tgccctatgc tggatgaggg ggtggaacca 601 gatgacgtcg attgttggtg caacacgacg tcaacttggg ttgtgtacgg aacctgccat 661 cacaaaaaag gtgaagcacg gagatctaga agagctgtga cgctcccttc ccattccact 721 aggaagctgc aaacgcggtc gcaaacctgg ttggaatcaa gagaatacac aaagcacttg 781 attagagtcg aaaattggat attcaggaac cctggcttcg cgttagcagc agctgctatc 841 gcttggcttt tgggaagctc aacgagccaa aaagtcatat acttggtcat gatactgctg 901 attgccccgg catacagcat caggtgcata ggagtcagca atagggactt tgtggaaggt 961 atgtcaggtg ggacttgggt tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg 1021 gcacaggaca aaccgactgt cgacatagag ctggttacaa caacagtcag caacatggcg 1081 gaggtaagat cctactgcta tgaggcatca atatcagaca tggcttcgga cagccgctgc 1141 ccaacacaag gtgaagccta ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga 1201 acgttagtgg acagaggctg gggaaatgga tgtggacttt ttggcaaagg gagcctggtg 1261 acatgcgcta agtttgcatg ctccaagaaa atgaccggga aaagcatcca gccagagaat 1321 ctggagtacc ggataatgct gtcagttcat ggctcccagc acagtgggat gatcgttaat 1381 gacacaggac atgaaactga tgagaataga gcgaaagttg agataacgcc caattcacca 1441 agagccgaag ccaccctggg gggttttgga agcctaggac ttgattgtga accgaggaca 1501 ggccttgact tttcagattt gtattacttg actatgaata acaagcactg gttggttcac 1561 aaggagtggt tccacgacat tccattacct tggcacgctg gggcagacac cggaactcca 1621 cactggaaca acaaagaagc actggtagag ttcaaggacg cacatgccaa aaggcaaact 1681 gtcgtggttc tagggagtca agaaggagca gttcacacgg cccttgctgg agctctggag 1741 gctgagatgg atggagcaaa gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa 1801 atggataaac ttagattgaa gggcgtgtca tactccttgt gtactgcagc gttcacattc 1861 accaagatcc cggctgaaac actgcacggg acagtcacag tggaggtaca gtacgcaggg 1921 acagatggac cttgcaaggt tccagctcag atggcggtgg acatgcaaac tctgacccca 1981 gttgggaggt tgataaccgc taaccccgta atcactgaaa gcactgagaa ctctaagatg 2041 atgctggaac ttgatccacc atttggggac tcttacattg tcataggagt cggggagaag 2101 aagatcaccc accactggca caggagtggc agcaccattg gaaaagcatt tgaagccact 2161 gtgagaggtg ccaagagaat ggcagtcttg ggagacacag cctgggactt tggatcagtt 2221 ggaggcgctc tcaactcatt gggcaagggc atccatcaaa tttttggagc agctttcaaa 2281 tcattgtttg gaggaatgtc ctggttctca caaattctca ttggaacgtt gctgatgtgg 2341 ttgggtctga acacaaagaa tggatctatt tcccttatgt gcttggcctt agggggagtg 2401 ttgatcttct tatccacagc cgtctctgct gatgtggggt gctcggtgga cttctcaaag 2461 aaggagacga gatgcggtac aggggtgttt gtctataacg acgttgaagc ctggagggac 2521 aggtacaagt accatcctga ctccccccgt agattggcag cagcagtcaa gcaagcctgg 2581 gaagatggta tctgcgggat ctcctctgtt tcaagaatgg aaaacatcat gtggagatca 2641 gtagaagggg agctcaacgc aatcctggaa gagaatggag ttcaactgac ggtcgttgtg 2701 ggatctgtaa aaaaccccat gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag 2761 ctgccccacg gctggaaggc ttgggggaaa tcgtacttcg tcagagcagc aaagacaaat 2821 aacagctttg tcgtggatgg tgacacactg aaggaatgcc cactcaaaca tagagcatgg 2881 aacagctttc ttgtggagga tcatgggttc ggggtatttc acactagtgt ctggctcaag 2941 gttagagaag actattcatt agagtgtgat ccagccgtta ttggaacagc tgttaaggga 3001 aaggaggctg tacacagtga tctaggctac tggattgaga gtgagaagaa tgacacatgg 3061 aggctgaaga gggcccatct gatcgagatg aaaacatgtg aatggccaaa gtcccacaca 3121 ttgtggacag atggaataga agagagtgat ctgatcatac ccaagtcttt agctgggcca 3181 ctcagccatc acaataccag agagggctac aggacccaaa tgaaagggcc atggcacagt 3241 gaggagcttg aaattcggtt tgaggaatgc ccaggcacta aggtccacgt ggaggaaaca 3301 tgtggaacaa gaggaccatc tctgagatca accactgcaa gcggaagggt gatcgaggaa 3361 tggtgctgca gggagtgcac aatgccccca ctgtcgttcc gggctaaaga tggctgttgg 3421 tatggaatgg agataaggcc caggaaagaa ccagaaagca acttagtaag gtcaatggtg 3481 actgcaggat caactgatca catggaccac ttctcccttg gagtgcttgt gatcctgctc 3541 atggtgcagg aagggctgaa gaagagaatg accacaaaga tcatcataag cacatcaatg 3601 gcagtgctgg tagctatgat cctgggagga ttttcaatga gtgacctggc taagcttgca 3661 attttgatgg gtgccacctt cgcggaaatg aacactggag gagatgtagc tcatctggcg 3721 ctgatagcgg cattcaaagt cagaccagcg ttgctggtat ctttcatctt cagagctaat 3781 tggacacccc gtgaaagcat gctgctggcc ttggcctcgt gtcttttgca aactgcgatc 3841 tccgccttgg aaggcgacct gatggttctc atcaatggtt ttgctttggc ctggttggca 3901 gtacgagcga tggttgttcc acgcactgat aacatcacct tagcaatcct ggctgctctg 3961 acaccactgg cccggggcac actgcttgtg gcgtggagag caggccttgc tacttgcggg 4021 gggtttatgc tcctctctct gaagggaaaa ggcagtgtga agaagaactt accatttgtc 4081 atggccctgg gactaaccgc tgtgaggctg gtcgacccca tcaacgtggt gggactgctg 4141 ttgctcacaa ggagtgggaa gcggagctgg ccccctagcg aagtactcac agctgttggc 4201 ctgatatgcg cattggctgg agggttcgcc aaggcagata tagagatggc tgggcccatg 4261 gccgcggtcg gtctgctaat tgtcagttac gtggtctcag gaaagagtgt ggacatgtac 4321 attgaaagag caggtgacat cacatgggaa aaagatgcgg aagtcactgg aaacagtccc 4381 cggctcgatg tggcgctaga tgagagtggt gatttctccc tggtggagga tgacggtccc 4441 cccatgagag agatcatact caaggtggtc ctgatgacca tctgtggcat gaacccaata 4501 gccataccct ttgcagctgg agcgtggtac gtatacgtga agactggaaa aaggagtggt 4561 gctctatggg atgtgcctgc tcccaaggaa gtaaaaaagg gggagaccac agatggagtg 4621 tacagagtaa tgactcgcag actgctaggt tcaacacaag ttggagtggg agttatgcaa 4681 gagggggtct ttcacactat gtggcacgtc acaaaaggat ccgcgctgag aagcggtgaa 4741 gggagacttg atccatactg gggagatgtc aagcaggatc tggtgtcata ctgtggtcca 4801 tggaagctag atgccgcctg ggacgggcac agcgaggtgc agctcttggc cgtgcccccc 4861 ggagagagag cgaggaacat ccagactctg cccggaatat ttaagacaaa ggatggggac 4921 attggagcgg ttgcgctgga ttacccagca ggaacttcag gatctccaat cctagacaag 4981 tgtgggagag tgataggact ttatggcaat ggggtcgtga tcaaaaatgg gagttatgtt 5041 agtgccatca cccaagggag gagggaggaa gagactcctg ttgagtgctt cgagccttcg 5101 atgctgaaga agaagcagct aactgtctta gacttgcatc ctggagctgg gaaaaccagg 5161 agagttcttc ctgaaatagt ccgtgaagcc ataaaaacaa gactccgtac tgtgatctta 5221 gctccaacca gggttgtcgc tgctgaaatg gaggaggccc ttagagggct tccagtgcgt 5281 tatatgacaa cagcagtcaa tgtcacccac tctggaacag aaatcgtcga cttaatgtgc 5341 catgccacct tcacttcacg tctactacag ccaattagag tccccaacta taatctgtat 5401 attatggatg aggcccactt cacagatccc tcaagtatag cagcaagagg atacatttca 5461 acaagggttg agatgggcga ggcggctgcc atcttcatga ccgccacgcc accaggaacc 5521 cgtgacgcat ttccggactc caactcacca attatggaca ccgaagtgga agtcccagag 5581 agagcctgga gctcaggctt tgattgggtg acggatcatt ctggaaaaac agtttggttt 5641 gttccaagcg tgaggaacgg caatgagatc gcagcttgtc tgacaaaggc tggaaaacgg 5701 gtcatacagc tcagcagaaa gacttttgag acagagttcc agaaaacaaa acatcaagag 5761 tgggactttg tcgtgacaac tgacatttca gagatgggcg ccaactttaa agctgaccgt 5821 gtcatagatt ccaggagatg cctaaagccg gtcatacttg atggcgagag agtcattctg 5881 gctggaccca tgcctgtcac acatgccagc gctgcccaga ggagggggcg cataggcagg 5941 aatcccaaca aacctggaga tgagtatctg tatggaggtg ggtgcgcaga gactgacgaa 6001 gaccatgcac actggcttga agcaagaatg ctccttgaca atatttacct ccaagatggc 6061 ctcatagcct cgctctatcg acctgaggcc gacaaagtag cagccattga gggagagttc 6121 aagcttagga cggagcaaag gaagaccttt gtggaactca tgaaaagagg agatcttcct 6181 gtttggctgg cctatcaggt tgcatctgcc ggaataacct acacagatag aagatggtgc 6241 tttgatggca cgaccaacaa caccataatg gaagacagtg tgccggcaga ggtgtggacc 6301 agacacggag agaaaagagt gctcaaaccg aggtggatgg acgccagagt ttgttcagat 6361 catgcggccc tgaagtcatt caaggagttt gccgctggga aaagaggagc ggcttttgga 6421 gtgatggaag ccctgggaac actgccagga cacatgacag agagattcca ggaagccatt 6481 gacaacctcg ctgtgctcat gcgggcagag actggaagca ggccttacaa agccgcggca 6541 gcccaattgc cggagaccct agagaccatt atgcttttgg ggttgctggg aacagtctcg 6601 ctgggaatct tcttcgtctt gatgaggaac aagggcatag ggaagatggg ctttggaatg 6661 gtgactcttg gggccagcgc atggctcatg tggctctcgg aaattgagcc agccagaatt 6721 gcatgtgtcc tcattgttgt gttcctattg ctggtggtgc tcatacctga gccagaaaag 6781 caaagatctc cccaggacaa ccaaatggca atcatcatca tggtagcagt aggtcttctg 6841 ggcttgatta ccgccaatga actcggatgg ttggagagaa caaagagtga cctaagccat 6901 ctaatgggaa ggagagagga gggggcaacc ataggattct caatggacat tgacctgcgg 6961 ccagcctcag cttgggccat ctatgctgcc ttgacaactt tcattacccc agccgtccaa 7021 catgcagtga ccacctcata caacaactac tccttaatgg cgatggccac gcaagctgga 7081 gtgttgtttg gtatgggcaa agggatgcca ttctacgcat gggactttgg agtcccgctg 7141 ctaatgatag gctgctactc acaattaaca cccctgaccc taatagtggc catcattttg 7201 ctcgtggcgc actacatgta cttgatccca gggctgcagg cagcagctgc gcgtgctgcc 7261 cagaagagaa cggcagctgg catcatgaag aaccctgttg tggatggaat agtggtgact 7321 gacattgaca caatgacaat tgacccccaa gtggagaaaa agatgggaca ggtgctactc 7381 atagcagtag ccgtctccag cgccatactg tcgcggaccg cctgggggtg gggggaggct 7441 ggggccctga tcacagccgc aacttccact ttgtgggaag gctctccgaa caagtactgg 7501 aactcctcta cagccacttc actgtgtaac atttttaggg gaagttactt ggctggagct 7561 tctctaatct acacagtaac aagaaacgct ggcttggtca agagacgtgg gggtggaaca 7621 ggagagaccc tgggagagaa atggaaggcc cgcttgaacc agatgtcggc cctggagttc 7681 tactcctaca aaaagtcagg catcaccgag gtgtgcagag aagaggcccg ccgcgccctc 7741 aaggacggtg tggcaacggg aggccatgct gtgtcccgag gaagtgcaaa gctgagatgg 7801 ttggtggagc ggggatacct gcagccctat ggaaaggtca ttgatcttgg atgtggcaga 7861 gggggctgga gttactacgc cgccaccatc cgcaaagttc aagaagtgaa aggatacaca 7921 aaaggaggcc ctggtcatga agaacccgtg ttggtgcaaa gctatgggtg gaacatagtc 7981 cgtcttaaga gtggggtgga cgtctttcat atggcggctg agccgtgtga cacgttgctg 8041 tgtgacatag gtgagtcatc atctagtcct gaagtggaag aagcacggac gctcagagtc 8101 ctctccatgg tgggggattg gcttgaaaaa agaccaggag ccttttgcat aaaagtgttg 8161 tgcccataca ccagcactat gatggaaacc ctggagcgac tgcagcgtag gtatggggga 8221 ggactggtca gagtgccact ctcccgcaac tctacacatg agatgtactg ggtctctgga 8281 gcgaaaagca acatcataaa aagtgtgtcc accacgagcc agctcctctt ggggcgcatg 8341 gacgggccta ggaggccagt gaaatatgag gaggatgtga atctcggctc tggcacgcgg 8401 gctgtggcaa gctgcgctga agctcccaac atgaagatca ttggtaaccg cattgaaagg 8461 atccgcagtg agcacgcgga aacgtggttc tttgacgaga accacccata taggacatgg 8521 gcttaccatg gaagctatga ggcccccaca caagggtcag cgtcctctct aataaacggg 8581 gttgtcaggc tcctgtcaaa accctgggat gtggtgactg gagtcacagg aatagccatg 8641 accgacacca caccgtatgg tcagcaaaga gttttcaagg aaaaagtgga cactagggtg 8701 ccagaccccc aagaaggcac tcgtcaggtt atgagcatgg tctcttcctg gttgtggaaa 8761 gagctaggca aacacaaacg gccacgagtc tgtaccaaag aagagttcat caacaaggtt 8821 cgtagcaatg cagcattagg ggcaatattt gaagaggaaa aagagtggaa gactgcagtg 8881 gaagctgtga acgatccaag gttctgggct ctagtggaca aggaaagaga gcaccacctg 8941 agaggagagt gccagagttg tgtgtacaac atgatgggaa aaagagaaaa gaaacaaggg 9001 gaatttggaa aggccaaggg cagccgcgcc atctggtata tgtggctggg ggctagattt 9061 ctagagttcg aagcccttgg attcttgaac gaggatcact ggatggggag agagaactca 9121 ggaggtggtg ttgaagggct gggattacaa agactcggat atgtcctaga agagatgagt 9181 cgtataccag gaggaaggat gtatgcagat gacactgctg gctgggacac ccgcattagc 9241 aggtttgatc tggagaatga agctctaatc accaaccaaa tggagaaagg gcacagggcc 9301 ttggcattgg ccataatcaa gtacacatac caaaacaaag tggtaaaggt ccttagacca 9361 gctgaaaaag ggaaaacagt tatggacatt atttcgagac aagaccaaag ggggagcgga 9421 caagttgtca cttacgctct taacacattt accaacctag tggtgcaact cattcggaat 9481 atggaggctg aggaagttct agagatgcaa gacttgtggc tgctgcggag gtcagagaaa 9541 gtgaccaact ggttgcagag caacggatgg gataggctca aacgaatggc agtcagtgga 9601 gatgattgcg ttgtgaagcc aattgatgat aggtttgcac atgccctcag gttcttgaat 9661 gatatgggaa aagttaggaa ggacacacaa gagtggaaac cctcaactgg atgggacaac 9721 tgggaagaag ttccgttttg ctcccaccat ttcaacaagc tccatctcaa ggacgggagg 9781 tccattgtgg ttccctgccg ccaccaagat gaactgattg gccgggcccg cgtctctcca 9841 ggggcgggat ggagcatccg ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg 9901 cagctccttt atttccacag aagggacctc cgactgatgg ccaatgccat ttgttcatct 9961 gtgccagttg actgggttcc aactgggaga actacctggt caatccatgg aaagggagaa 10021 tggatgacca ctgaagacat gcttgtggtg tggaacagag tgtggattga ggagaacgac 10081 cacatggaag acaagacccc agttacgaaa tggacagaca ttccctattt gggaaaaagg 10141 gaagacttgt ggtgtggatc tctcataggg cacagaccgc gcaccacctg ggctgagaac 10201 attaaaaaca cagtcaacat ggtgcgcagg atcataggtg atgaagaaaa gtacatggat 10261 tacctatcca cccaagttcg ctacttgggt gaagaagggt ctacacctgg agtgctgtaa 10321 gcaccaatct taatgttgtc aggcctgcta gtcagccaca gcttggggaa agctgtgcag 10381 cctgtgaccc ccccaggaga a Link to comment Share on other sites More sharing options...
niman Posted February 29, 2016 Author Report Share Posted February 29, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1852518525100%0.0100%KU761564.1Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds1848918489100%0.099%KU740184.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1838418384100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1838418384100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1838118381100%0.099%KU365778.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1837218372100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1837218372100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1837218372100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1836618366100%0.099%KU365777.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1835418354100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1834818348100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1833918339100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1833018330100%0.099%KU729218.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1831818318100%0.099%KU501217.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183141831499%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1831218312100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1831218312100%0.099%KU501216.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1830318303100%0.099%KU527068.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1815918159100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1800618006100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds176991769999%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176521765298%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1754417544100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1740717407100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164111641199%0.095%HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted March 1, 2016 Author Report Share Posted March 1, 2016 Zika sequence map updatedhttps://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en Link to comment Share on other sites More sharing options...
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