D68 Enterovirus Mexico Sequences Include Novel AFP Sub-clade

[niman]

National Institute of Respiratory Diseases in Mexico City released 2014 D68 sequences which match acute flaccid paralysis (AFP) novel sub-clade.

[niman]

LOCUS       KR081327                 453 bp    RNA     linear   VRL 18-APR-2015
DEFINITION  Enterovirus D68 isolate MEX3080/14 viral protein 1 gene, partial
            cds.
ACCESSION   KR081327
VERSION     KR081327.1  GI:806981400
KEYWORDS    .
SOURCE      Enterovirus D68 (EV-D68)
  ORGANISM  Enterovirus D68
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Picornavirales; Picornaviridae; Enterovirus; Enterovirus D.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Vazquez-Perez,J.A., Moreno-Valencia,Y., Hernandez-Hernandez,V.A.,
            Romero-Espinoza,J.I., Castillejo-Lopez,M., Hernandez,A.,
            Ramirez-Gonzalez,J.E. and Diaz-Quinones,A.
  TITLE     EV-D68 infection in children with asthma exacerbation and pneumonia
            in Mexico City during 2014 autumn
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Vazquez-Perez,J.A., Hernandez-Hernandez,V.A., Romero-Espinoza,J.I.,
            Coronel-Tellez,R.H. and Moreno-Valencia,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2015) Virology and Mycology Research, National
            Institute of Respiratory Diseases, Calzada de Tlalpan 4502, Seccion
            XVI Tlalpan, Mexico City, Mexico D.F. 14080, Mexico
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Enterovirus D68"
                     /mol_type="genomic RNA"
                     /isolate="MEX3080/14"
                     /isolation_source="pediatric respiratory sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:42789"
                     /country="Mexico"
                     /collection_date="Oct-2014"
     CDS             <1..>453
                     /note="VP1"
                     /codon_start=1
                     /product="viral protein 1"
                     /protein_id="AKC32639.1"
                     /db_xref="GI:806981401"
                     /translation="GVSETLVENFLSRAALVSKRSFEYKDHTSSAAQADKNFFKWTIN
                     TRSFVQLRRKLELFTYLRFDAEITILTTVAVNGSSNNTYVGLPDLTLQAMFVPTGALT
                     PEKQDSFHWQSGSNASVFFKISDPPARITIPFMCINSAYSVFYDGFAGF"
ORIGIN      
        1 ggtgtgtccg agactctagt ggagaatttt ctcagtagag cagctttggt atcaaagaga
       61 agttttgaat acaaagatca tacttcgtct gcagcacaag cagacaagaa ctttttcaaa
      121 tggacaatta acaccagatc ctttgtacag ttaagaagaa aattagaatt attcacatac
      181 cttagatttg atgctgagat cactatactc acaactgtag cagtgaatgg tagtagtaat
      241 aatacatacg tgggtcttcc tgacttgaca cttcaagcaa tgtttgtacc cactggtgct
      301 cttaccccag aaaagcagga ctcattccac tggcaatcag gcagtaatgc tagtgtattc
      361 tttaaaatct ctgacccccc agccagaata accatacctt ttatgtgcat taactcagca
      421 tactcagttt tttatgatgg ctttgccgga ttt

[niman]

Phylogenetic analysis of 2014 AFP sequences