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Pittsburgh SARS CoV2 Sequences Are Largely The Italian Lineage


niman

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UPMC has released (at GISAID) 39 SARS CoV2 sequences from Pittsburgh patients.  37 were the Italian (clade G) lineage.  For Pennsylvania, there are now 48 SARS CoV sequences, with 46 being the Italian lineage.

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Virus name: hCoV-19/USA/PA-MGSC58-05/2020
Accession ID: EPI_ISL_436504
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC55-05/2020
Accession ID: EPI_ISL_436502
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC53-05/2020
Accession ID: EPI_ISL_436501
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC52-05/2020
Accession ID: EPI_ISL_436500
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC51-05/2020
Accession ID: EPI_ISL_436499
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC50-05/2020
Accession ID: EPI_ISL_436498
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC49-05/2020
Accession ID: EPI_ISL_436497
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC48-05/2020
Accession ID: EPI_ISL_436496
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC47-05/2020
Accession ID: EPI_ISL_436495
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC46-05/2020
Accession ID: EPI_ISL_436494
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC45-05/2020
Accession ID: EPI_ISL_436493
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC44-05/2020
Accession ID: EPI_ISL_436492
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC43-05/2020
Accession ID: EPI_ISL_436491
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC42-05/2020
Accession ID: EPI_ISL_436490
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC41-05/2020
Accession ID: EPI_ISL_436489
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC40-05/2020
Accession ID: EPI_ISL_436488
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC38-05/2020
Accession ID: EPI_ISL_436486
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC36-05/2020
Accession ID: EPI_ISL_436485
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC35-05/2020
Accession ID: EPI_ISL_436484
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC33-05/2020
Accession ID: EPI_ISL_436483
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC32-05/2020
Accession ID: EPI_ISL_436482
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC30-05/2020
Accession ID: EPI_ISL_436481
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC29-05/2020
Accession ID: EPI_ISL_436480
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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Virus name: hCoV-19/USA/PA-MGSC28-05/2020
Accession ID: EPI_ISL_436479
Type: betacoronavirus
Passage details/history: Original
Sample information
 
Collection date: 2020-03
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny County
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