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Recent Pittsburgh SARS CoV2 Sequences Are Largely The Italian Lineage


niman

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Microbial Genomic Epidemiological Laboratory has released (at GISAID) 59 recent (largely April collections) SARS CoV2 sequences from Pittsburgh patients at UPMC,  55 were the Italian lineage (largely GISAID clade GH).

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Virus name: hCoV-19/USA/PA-MGEL155/2020
Accession ID: EPI_ISL_454411
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-08
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL154/2020
Accession ID: EPI_ISL_454410
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-05
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL152/2020
Accession ID: EPI_ISL_454409
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-07
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL151/2020
Accession ID: EPI_ISL_454408
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-07
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL149/2020
Accession ID: EPI_ISL_454407
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-10
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL148/2020
Accession ID: EPI_ISL_454406
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-08
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL147/2020
Accession ID: EPI_ISL_454405
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL146/2020
Accession ID: EPI_ISL_454404
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-08
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL143/2020
Accession ID: EPI_ISL_454403
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-07
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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Virus name: hCoV-19/USA/PA-MGEL140/2020
Accession ID: EPI_ISL_454402
Type: betacoronavirus
Lineage (GISAID Clade): B.1 (GH)
Passage details/history: Original
Sample information
 
Collection date: 2020-04-06
Location: North America / USA / Pennsylvania / Pittsburgh
Host: Human
Additional location information: Allegheny county
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