niman Posted February 20, 2017 Report Posted February 20, 2017 (edited) WHO Beijing Center has released 6 additional sets of H7 and N9 HPAI sequences collected between Nov 7 and Dec 12. All have polybasic cleavage site KRKRTAR in H7 and wild type (R292) for Tamiflu resistance. Edited February 20, 2017 by niman
niman Posted February 20, 2017 Author Report Posted February 20, 2017 (edited) A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) EPI_ISL_249316 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-11-07 A/Environment/Guangdong/C16283219/2016(H7,H9,N2,N9) EPI_ISL_249315 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-11-02 A/Environment/Guangdong/C16283277/2016(H7,H9,N2,N9) EPI_ISL_249314 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-07 A/Environment/Guangdong/KGZ4048/2016(H7,H9,N2,N9) EPI_ISL_249313 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-12 A/Environment/Guangdong/KGZ4068/2016(H7,H9,N2,N9) EPI_ISL_249312 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-12 A/Environment/Guangdong/KGZ4075/2016(H7,H9,N2,N9) EPI_ISL_249311 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-12 Edited February 20, 2017 by niman
niman Posted February 20, 2017 Author Report Posted February 20, 2017 Isolate name: A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) Isolate ID: EPI_ISL_249316 Passage details/history: E1 Type: A Lineage: Sample information Collection date: 2016-11-07 Host Environment Additional host information: Location: China Additional location information: Guangdong Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: WHO Chinese National Influenza Center Sample ID given by the submitting laboratory: Authors: Address: WHO Chinese National Influenza Center Virology Institute, Chinese CDC 155 Changbai Road, Changping District, Beijing 102206 China Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/Environment/Guangdong/C162811110/2016-HA 1695 EPI919627 NA A/Environment/Guangdong/C162811110/2016-NA 1398 EPI919626 Submitter information Submitter: Yang, Lei Submission Date: 2017-02-20 Last modifier: Yang, Lei Last modified: 2017-02-20 Address: WHO Chinese National Influenza Center Virology Institute, Chinese CDC 155 Changbai Road, Changping District, Beijing 102206 China
niman Posted February 20, 2017 Author Report Posted February 20, 2017 Align Segment-ID Name Score E-Value Identity EPI919627 A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3131.2 0.000000e+00 1695/1695 (100%) EPI919615 A/Environment/Guangdong/C16283222/2016 (A/H7N9) segment 4 (HA) 3114.6 0.000000e+00 1692/1695 (99%) EPI919623 A/Environment/Guangdong/C16283277/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3109.0 0.000000e+00 1691/1695 (99%) EPI919625 A/Environment/Guangdong/C16283219/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3103.5 0.000000e+00 1690/1695 (99%) EPI919599 A/Guangdong/17SF006/2017 (A/H7N9) segment 4 (HA) 3086.9 0.000000e+00 1687/1695 (99%) EPI918736 A/Qingyuan/GIRD1/2017 (A/H7N9) segment 4 (HA) 3086.9 0.000000e+00 1687/1695 (99%) EPI919621 A/Environment/Guangdong/KGZ4048/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI919619 A/Environment/Guangdong/KGZ4068/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI919617 A/Environment/Guangdong/KGZ4075/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI919607 A/Guangdong/17SF003/2016 (A/H7N9) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI917065 A/Taiwan/1/2017 (A/H7N9) segment 4 (HA) 3048.1 0.000000e+00 1680/1695 (99%) EPI507710 A/turkey/Italy/4828/1999 (A/H7N1) segment 4 (HA) 2344.5 0.000000e+00 1562/1704 (91%) EPI68427 A/turkey/Italy/4708/1999 (A/H7N1) segment 4 (HA) 2344.5 0.000000e+00 1562/1704 (91%) EPI63296 A/quail/Italy/396/2000 (A/H7N1) segment 4 (HA) 2340.8 0.000000e+00 1562/1705 (91%) EPI507734 A/turkey/Italy/4756/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI507718 A/turkey/Italy/4827/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI507702 A/turkey/Italy/4618/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI505580 A/chicken/Italy/4845/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107393 A/ostrich/Italy/984/00 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107376 A/ostrich/Italy/984/00 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107357 A/chicken/Italy/5093/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107338 A/chicken/Italy/5093/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI69101 A/turkey/Italy/4617/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI69063 A/chicken/Italy/4789/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI68218 A/turkey/Italy/1084/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI68199 A/chicken/Italy/2335/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI63258 A/chicken/Italy/4746/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI60747 A/duck/Italy/551/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI60386 A/turkey/Italy/4580/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI58714 A/ostrich/Italy/1038/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12992 A/Turkey/Italy/335/00 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12990 A/Turkey/Italy/13468/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12984 A/Turkey/Italy/13467/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12982 A/Chicken/Italy/13307/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12980 A/chicken/Italy/13474/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12884 A/turkey/Italy/12598/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI505858 A/guinea fowl/Italy/1766/2000 (A/H7N1) segment 4 (HA) 2335.3 0.000000e+00 1561/1705 (91%) EPI651420 A/chicken/Italy/445 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI505601 A/turkey/Italy/5005/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI505582 A/chicken/Italy/4911/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI505581 A/turkey/Italy/4906/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI353345 A/chicken/Italy/445/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI242904 A/chicken/Italy/445/99 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI242903 A/Italy/445/99 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI69044 A/quail/Italy/4992/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI13148 A/chicken/Italy/445/99 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI505640 A/turkey/Italy/140/2000 (A/H7N1) segment 4 (HA) 2331.6 0.000000e+00 1560/1705 (91%) EPI505851 A/chicken/Italy/1730/2000 (A/H7N1) segment 4 (HA) 2329.7 0.000000e+00 1560/1705 (91%) EPI505603 A/chicken/Italy/5074/1999 (A/H7N1) segment 4 (HA) 2329.7 0.000000e+00 1557/1700 (91%) EPI507726 A/turkey/Italy/4749/1999 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1560/1705 (91%) EPI505811 A/chicken/Italy/1651/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1559/1704 (91%) EPI505781 A/chicken/Italy/933/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1558/1703 (91%) EPI505703 A/chicken/Italy/797/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1560/1705 (91%) EPI238415 A/Turkey/Italy/13489/99 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1560/1705 (91%) EPI63277 A/guinea fowl/Italy/155/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1561/1706 (91%) EPI43057 A/chicken/Italy/1285/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1559/1704 (91%) EPI505875 A/quail/Italy/1764/2000 (A/H7N1) segment 4 (HA) 2324.2 0.000000e+00 1559/1705 (91%) EPI505809 A/goose/Italy/1310/2000 (A/H7N1) segment 4 (HA) 2324.2 0.000000e+00 1559/1705 (91%) EPI60690 A/turkey/Italy/2984/2000 (A/H7N1) segment 4 (HA) 2324.2 0.000000e+00 1561/1707 (91%) EPI505779 A/guineafowl/Italy/918/2000 (A/H7N1) segment 4 (HA) 2322.4 0.000000e+00 1560/1706 (91%) EPI68522 A/pekin duck/Italy/1848/2000 (A/H7N1) segment 4 (HA) 2322.4 0.000000e+00 1559/1705 (91%) EPI12988 A/Chicken/Italy/267/00 (A/H7N1) segment 4 (HA) 2322.4 0.000000e+00 1559/1705 (91%) EPI505861 A/guinea fowl/Italy/1847/2000 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1558/1705 (91%) EPI505702 A/turkey/Italy/720/2000 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1555/1700 (91%) EPI107319 A/ostrich/Italy/2332/00 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1558/1705 (91%) EPI107300 A/ostrich/Italy/2332/00 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1558/1705 (91%) EPI319892 A/Netherlands/086/03 (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1554/1699 (91%) EPI294949 A/chicken/Netherlands/03008344/03(H7N7) (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI290279 A/chicken/Netherlands/03005432/03(H7N7) (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI237858 A/chicken/Netherlands/03009938/03 (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI237816 A/chicken/Netherlands/03010351/03 (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI505605 A/chicken/Italy/5086/1999 (A/H7N1) segment 4 (HA) 2315.0 0.000000e+00 1556/1702 (91%) EPI505604 A/chicken/Italy/5079/1999 (A/H7N1) segment 4 (HA) 2315.0 0.000000e+00 1553/1698 (91%) EPI294973 A/chicken/Netherlands/03008200/03(H7N7) (A/H7N7) segment 4 (HA) 2315.0 0.000000e+00 1555/1701 (91%) EPI294958 A/chicken/Netherlands/03008374/03(H7N7) (A/H7N7) segment 4 (HA) 2315.0 0.000000e+00 1555/1701 (91%) EPI237855 A/chicken/Netherlands/03009127/03 (A/H7N7) segment 4 (HA) 2315.0 0.000000e+00 1555/1701 (91%) EPI505693 A/chicken/Italy/501/2000 (A/H7N1) segment 4 (HA) 2313.1 0.000000e+00 1551/1696 (91%) EPI304486 A/chicken/belgium/06601/2003 (A/H7N7) segment 4 (HA) 2313.1 0.000000e+00 1554/1700 (91%) EPI319946 A/Netherlands/295/03 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1553/1699 (91%) EPI304477 A/chicken/belgium/06383/2003 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI304468 A/chicken/belgium/06175/2003 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295048 A/chicken/Netherlands/03013833/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295045 A/chicken/Netherlands/03012010/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295042 A/chicken/Netherlands/03012012/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295024 A/chicken/Netherlands/03008331/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI294976 A/chicken/Netherlands/03009080/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI294952 A/chicken/Netherlands/03008381/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI294910 A/chicken/Netherlands/03002974/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290444 A/chicken/Netherlands/03012785/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290438 A/chicken/Netherlands/03012011/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290435 A/chicken/Netherlands/03011061/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290432 A/turkey/Netherlands/03010737/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290426 A/turkey/Netherlands/03010495/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290381 A/chicken/Netherlands/03009831/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290285 A/chicken/Netherlands/03003441/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290273 A/chicken/Netherlands/03008059/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290228 A/chicken/Netherlands/03003325/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290225 A/chicken/Netherlands/03003403/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290189 A/chicken/Netherlands/03002994/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI237887 A/turkey/Netherlands/03010821/03 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%)
niman Posted February 20, 2017 Author Report Posted February 20, 2017 Align Segment-ID Name Score E-Value Identity EPI919626 A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2582.7 0.000000e+00 1398/1398 (100%) EPI919614 A/Environment/Guangdong/C16283222/2016 (A/H7N9) segment 6 (NA) 2566.1 0.000000e+00 1395/1398 (99%) EPI919624 A/Environment/Guangdong/C16283219/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2560.6 0.000000e+00 1394/1398 (99%) EPI919622 A/Environment/Guangdong/C16283277/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2560.6 0.000000e+00 1394/1398 (99%) EPI919598 A/Guangdong/17SF006/2017 (A/H7N9) segment 6 (NA) 2549.5 0.000000e+00 1392/1398 (99%) EPI918738 A/Qingyuan/GIRD1/2017 (A/H7N9) segment 6 (NA) 2544.0 0.000000e+00 1391/1398 (99%) EPI919620 A/Environment/Guangdong/KGZ4048/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2521.8 0.000000e+00 1387/1398 (99%) EPI919616 A/Environment/Guangdong/KGZ4075/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2521.8 0.000000e+00 1387/1398 (99%) EPI919606 A/Guangdong/17SF003/2016 (A/H7N9) segment 6 (NA) 2521.8 0.000000e+00 1387/1398 (99%) EPI919618 A/Environment/Guangdong/KGZ4068/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2518.1 0.000000e+00 1386/1398 (99%) EPI627232 A/Fujian/23/2015 (A/H7N9) segment 6 (NA) 2510.7 0.000000e+00 1386/1399 (99%) EPI627384 A/Guangdong/02497/2014 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI627216 A/Fujian/25/2015 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI627024 A/Guangdong/15SF027/2015 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI627000 A/Guangdong/15SF080/2015 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI769577 A/Fujian/16/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI628807 A/Fujian/27/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI628695 A/Guangdong/15SF055/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627312 A/Fujian/8/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627296 A/Fujian/19/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627264 A/Guangdong/15SF021/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627104 A/Fujian/17/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627048 A/Guangdong/15SF081/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI580389 A/Chicken/Guangdong/SW154/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI580381 A/Chicken/Guangdong/SW153/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI566130 A/Fujian/09273/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI769569 A/Fujian/10/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628687 A/Guangdong/15SF054/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628655 A/Environment/Hunan/20986/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628631 A/Environment/Guangdong/21275/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628583 A/Environment/Anhui/33248/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627256 A/Fujian/7/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627224 A/Fujian/24/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627120 A/Guangdong/15SF030/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627112 A/Guangdong/15SF043/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627096 A/Jiangsu/19758/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627040 A/Fujian/6/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627008 A/Jiangsu/19757/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI566083 A/Guizhou/03240/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI683029 A/chicken/Wenzhou/HATSLG01/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628743 A/Anhui/33224/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628663 A/Anhui/33227/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628639 A/Environment/Guangdong/21286/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628623 A/Environment/Guangdong/21231/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628591 A/Environment/Anhui/33240/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628575 A/Environment/Anhui/33250/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627472 A/Fujian/1/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627456 A/Fujian/3/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627304 A/Fujian/11/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627168 A/Zhejiang/4/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627088 A/Hunan/19763/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627080 A/Hunan/19762/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI692616 A/Huai'an/002/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI628823 A/Zhejiang/10/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI628775 A/Zhejiang/7/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI627464 A/Fujian/2/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI627288 A/Fujian/20/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI627192 A/Guangdong/15SF020/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI729461 A/Taiwan/4-CGMH2/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI692626 A/chicken/Huai'an/003/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI683028 A/chicken/Wenzhou/RAQL18/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI683027 A/chicken/Wenzhou/RAQL01/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI628751 A/Anhui/33225/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI628727 A/Anhui/33228/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI628607 A/Environment/Anhui/39280/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI593638 A/chicken/Jiangxi/19463/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI593625 A/chicken/Jiangxi/19426/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI593383 A/chicken/Jiangxi/18008/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592610 A/chicken/Jiangxi/13554/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592594 A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592579 A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592570 A/chicken/Jiangxi/13540/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592534 A/chicken/Jiangxi/13526/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592526 A/chicken/Jiangxi/13525/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592517 A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592510 A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592486 A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592462 A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592283 A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592246 A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI521919 A/Taiwan/2/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI627480 A/Fujian/17/2014 (A/H7N9) segment 6 (NA) 2473.8 0.000000e+00 1379/1399 (98%) EPI729453 A/Taiwan/4-CGMH1/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI707902 A/chicken/Shanghai/S3630/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI628567 A/Anhui/40095/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627919 A/Xinjiang/73030/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627911 A/Environment/Xinjiang/73033/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627440 A/Anhui/01887/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627240 A/Fujian/21/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627160 A/Zhejiang/3/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593583 A/chicken/Jiangxi/18524/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593543 A/chicken/Jiangxi/18513/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593453 A/chicken/Jiangxi/18470/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593400 A/chicken/Jiangxi/18035/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593132 A/chicken/Jiangxi/14502/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI592276 A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI707983 A/chicken/Shanghai/S3086/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) EPI707982 A/chicken/Shanghai/S3085/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) EPI707981 A/chicken/Shanghai/S3084/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) EPI707904 A/duck/Jiangsu/J3619/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%)
niman Posted February 23, 2017 Author Report Posted February 23, 2017 Podcast on LBM samples and H5N1 gain of function studies applied to LPAI H7N9 http://recombinomics.co/thedrnimanshow/2017/02/022317.mp3
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