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Everything posted by niman
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Four P.1 Variant SARS CoV2 Sequences From Amazonas Colombia
niman replied to niman's topic in Sequences (COVID)
Colombia/AMA-INS-VG-637/2021 1/20 63F Amazonas Colombia matches P.1 with K417T and 3 AA deletions in NSP6 map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=-2.049914284994407%2C-71.8906980253668&z=7 -
Four P.1 Variant SARS CoV2 Sequences From Amazonas Colombia
niman replied to niman's topic in Sequences (COVID)
Colombia/AMA-INS-VG-639/2021 1/21 51M Amazonas Colombia matches P.1 with K417T and 3 AA deletions in NSP6 map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=-2.049914284994407%2C-71.8906980253668&z=7 -
Instituto Nacional de Salud has released (at GISAID) four P.1 (Brazil) variant sequences collected on Jan 20-22 in Amazonas Colombia/AMA-INS-VG-639/2021 1/21 51M Amazonas Colombia Colombia/AMA-INS-VG-637/2021 1/20 63F Amazonas Colombia Colombia/AMA-INS-VG-636/2021 1/22 38F Amazonas Colombia Colombia/AMA-INS-VG-635/2021 1/22 48M Amazonas Colombia
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Arizona COVID Cases Increase To 782,887 Deaths To 14,055
niman posted a topic in Arizona (2019-nCoV)
https://www.azdhs.gov/preparedness/epidemiology-disease-control/infectious-disease-epidemiology/covid-19/dashboards/index.php -
CASES 473,348 TOTAL 371,771 CONFIRMED 101,577 PROBABLE LAST 14 DAYS 31,363 CASES 222,008 TESTED (DIAGNOSTIC) *TOTAL HOSPITALIZATIONS To Date Updates M-F at 3 p.m. 43,383 STATEWIDE DEATHS 8,523 TOTAL 6,753 CONFIRMED 1,770 PROBABLE TOTAL TESTED 2,191,851 DIAGNOSTIC 109,716 ANTIBODY PRESUMED RECOVERIES Updated Weekly 252,880 STATEWIDE https://alpublichealth.maps.arcgis.com/apps/opsdashboard/index.html#/6d2771faa9da4a2786a509d82c8cf0f7
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https://coronavirus.iowa.gov/#CurrentStatus
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CDC released 43 UK variant B.1.1.7 sequences (at GISAID) from 9 states, including the 22 below from Texas, which were collected Jan 20-25. Although collection dates were included, the sample location was limited to the collection state USA/TX-CDC-9N2I-8991/2021 1/20 32 USA/TX-CDC-9N2D-8990/2021 1/20 14 USA/TX-CDC-9N1Y-8987/2021 1/20 30 USA/TX-CDC-9N2S-8993/2021 1/22 28 USA/TX-CDC-9N3H-8998/2021 1/23 28 USA/TX-CDC-9N3W-9001/2021 1/25 22 USA/TX-CDC-9N1E-8983/2021 1/20 7 USA/TX-CDC-9N1O-8985/2021 1/21 17 USA/TX-CDC-9N41-9002/2021 1/25 76 USA/TX-CDC-9N23-8988/2021 1/21 51 USA/TX-CDC-9N37-8996/2021 1/23 32 USA/TX-CDC-9N3R-9000/2021 1/25 6 USA/TX-CDC-9N2X-8994/2021 1/23 24 USA/TX-CDC-9N46-9003/2021 1/25 80 USA/TX-CDC-9N0Z-8980/2021 1/20 3 USA/TX-CDC-9N4B-9004/2021 1/25 78 USA/TX-CDC-9N1T-8986/2021 1/21 32 USA/TX-CDC-9N0P-8978/2021 1/20 33 USA/TX-CDC-9N19-8982/2021 1/20 3 USA/TX-CDC-9N1J-8984/2021 1/20 3 USA/TX-CDC-9N14-8981/2021 1/20 26 USA/TX-CDC-9N32-8995/2021 1/23 44
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501.v2 SARS-CoV2 B.1.351 Variant Sequence From Virginia
niman replied to niman's topic in Sequences (COVID)
USA/VA-UNK599/2021Virginia map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=36.91675016771904%2C-77.7750598038137&z=8 -
The sequence described below has not been released. It will be assigned a UNK number, which will be updated upon release. USA/VA-UNK599/2021Virginia The Virginia Department of Health said the SARS-CoV-2 variant B.1.351 was identified in a sample from an adult who is a resident in Eastern Virginia. The health department is currently looking into the person’s case and travel history.
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Three 501.v2 SARS CoV2 Variant B.1.351 Sequences From Maryland
niman replied to niman's topic in Sequences (COVID)
USA/MD-MDH-0831/2021 1/29 Maryland matched 501.v2 with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=39.072650822408306%2C-76.67729857379747&z=9 -
Three 501.v2 SARS CoV2 Variant B.1.351 Sequences From Maryland
niman replied to niman's topic in Sequences (COVID)
USA/MD-MDH-0830/2021 1/30 Maryland matched 501.v2 with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=39.072650822408306%2C-76.67729857379747&z=9 -
Three 501.v2 SARS CoV2 Variant B.1.351 Sequences From Maryland
niman replied to niman's topic in Sequences (COVID)
USA/MD-MDH-0833/2021 2/1 matched 501.v2 with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=39.072650822408306%2C-76.67729857379747&z=9 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK576/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK575/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK574/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK573/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK572/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK571/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK570/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
30 UK Variant B.1.1.7 SARS CoV2 Sequences From Barrie Ontario Canada
niman replied to niman's topic in Sequences (COVID)
Canada/ON-PHL-UNK569/2021 Barrie Ontario Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=44.34411505526329%2C-79.79326777509645&z=11 -
Sequences for the cases below have not been released. However, there have been over 150 cases which have been sequenced or have been positive for N501Y (which is consistent with B.1.1.7). Another 30 have been assigned UNK numbers which will be updated when sequences are released. Canada/ON-PHL-UNK569/2021 Barrie Ontario Canada Canada/ON-PHL-UNK570/2021 Barrie Ontario Canada Canada/ON-PHL-UNK571/2021 Barrie Ontario Canada Canada/ON-PHL-UNK572/2021 Barrie Ontario Canada Canada/ON-PHL-UNK573/2021 Barrie Ontario Canada Canada/ON-PHL-UNK574/2021 Barrie Ontario Canada Canada/ON-PHL-UNK575/2021 Barrie Ontario Canada Canada/ON-PHL-UNK576/2021 Barrie Ontario Canada Canada/ON-PHL-UNK577/2021 Barrie Ontario Canada Canada/ON-PHL-UNK578/2021 Barrie Ontario Canada Canada/ON-PHL-UNK579/2021 Barrie Ontario Canada Canada/ON-PHL-UNK580/2021 Barrie Ontario Canada Canada/ON-PHL-UNK581/2021 Barrie Ontario Canada Canada/ON-PHL-UNK582/2021 Barrie Ontario Canada Canada/ON-PHL-UNK583/2021 Barrie Ontario Canada Canada/ON-PHL-UNK584/2021 Barrie Ontario Canada Canada/ON-PHL-UNK585/2021 Barrie Ontario Canada Canada/ON-PHL-UNK586/2021 Barrie Ontario Canada Canada/ON-PHL-UNK587/2021 Barrie Ontario Canada Canada/ON-PHL-UNK588/2021 Barrie Ontario Canada Canada/ON-PHL-UNK589/2021 Barrie Ontario Canada Canada/ON-PHL-UNK590/2021 Barrie Ontario Canada Canada/ON-PHL-UNK591/2021 Barrie Ontario Canada Canada/ON-PHL-UNK592/2021 Barrie Ontario Canada Canada/ON-PHL-UNK593/2021 Barrie Ontario Canada Canada/ON-PHL-UNK594/2021 Barrie Ontario Canada Canada/ON-PHL-UNK595/2021 Barrie Ontario Canada Canada/ON-PHL-UNK596/2021 Barrie Ontario Canada Canada/ON-PHL-UNK597/2021 Barrie Ontario Canada Canada/ON-PHL-UNK598/2021 Barrie Ontario Canada Monday marks one month since a devastating outbreak of COVID-19 took hold at Roberta Place Long Term Care in Barrie. Since an outbreak was declared Jan. 8, all 129 residents of the home have tested positive, and 69 of them have died. An infected essential caregiver has also passed away. On Sunday, the operator of Roberta Place said 105 staff members had been sickened. Jarlette Health Services said there are no active resident cases and 14 active staff cases. https://barrie.ctvnews.ca/mobile/31-days-of-heartbreak-at-roberta-place-ltc-in-barrie-ont-1.5299465
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62 UK Variant B.1.1.7 COVID Sequences From Alberta Canada
niman replied to niman's topic in Sequences (COVID)
Canada/AB-PHL-UNK568/2021 Alberta Canada map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=52.72940354941499%2C-116.02658732863696&z=7