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Everything posted by niman
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Three UK Variant B.1.1.7 SARS CoV2 Sequences From Arizona
niman replied to niman's topic in Sequences (COVID)
USA/AZ-ASU2341/2021 1/5 Arizona matched B.1.1.7 with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=33.410056260783946%2C-112.12298378849795&z=10 -
Arizona State University has released (at GISAID) three B.1.1.7 SARS CoV2 sequence collected Jan 5-7. USA/AZ-ASU2341/2021 1/5 Arizona USA/AZ-ASU2340/2021 1/7 Arizona USA/AZ-ASU2339/2021 1/7 Arizona The Arizona Department of Health Services (ADHS), the Maricopa County Department of Public Health (MCDPH), Pinal County Public Health Services District, and Arizona State University (ASU) reported today that the so-called U.K. COVID-19 variant, B.1.1.7, has been confirmed in three test samples from the state. https://www.azdhs.gov/director/public-information-office/index.php#news-release-012921
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UK Variant B.1.1.7 SARS CoV2 Sequence From Washington County Oregon
niman replied to niman's topic in Sequences (COVID)
USA/OR-OHSU-9914/2021 1/11 57M Washington County Oregon matched B.1.1.7 with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=45.529912209511615%2C-123.26720332241038&z=10 -
UK Variant B.1.1.7 SARS CoV2 Sequence From Los Angeles Co California
niman replied to niman's topic in Sequences (COVID)
USA/CA-LACPHL-AF00274/2021 1/18 Los Angeles County California matched B.1.1.7 variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=34.07522175107236%2C-118.48948347929682&z=12 -
Total Cases 52,470 Cases have not been updated for today. Please check back later. Hospitalizations 1,179 Total count (does not reflect current stays) Deaths 260 https://coronavirus-response-alaska-dhss.hub.arcgis.com/
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https://montana.maps.arcgis.com/apps/MapSeries/index.html?appid=7c34f3412536439491adcc2103421d4b
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https://health.hawaii.gov/coronavirusdisease2019/
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New Hampshire 2019 Novel Coronavirus (COVID-19) Summary Report https://www.nh.gov/covid19/ (data updated as of January 30, 2021- 9:00 AM) Number of Persons with COVID-19 1 65,362 Recovered 59,082 (90%) Deaths Attributed to COVID-19 1,042 (2%) Total Current COVID-19 Cases 5,238 Current Hospitalizations 217 Total Persons Tested at Selected Laboratories, Polymerase Chain Reaction (PCR)2 597,526 Total Persons Tested at Selected Laboratories, Antibody Laboratory Tests2 36,487 Persons with Specimens Submitted to NH PHL N/A Persons with Test Pending at NH PHL3 415 1 Includes specimens positive at any laboratory and those confirmed by CDC confirmatory testing.2 Includes specimens tested at the NH Public Health Laboratories (PHL), LabCorp, Quest, Dartmouth-Hitchcock Medical Center, Mako, certain hospital laboratories, the University of New Hampshire and their contracted laboratory, and those sent to CDC prior to NH PHL testing capacity.3 Includes specimens received and awaiting testing at NH PHL. Does not include tests pending at commercial laboratories. The Latest Active Cases Data The Latest Active Cases Map
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3,064 Douglas 1,575 Lancaster 1,009 Sarpy 288 Hall 239 Dodge 213 Buffalo 158 Lincoln 150 Cass 150 Washington 128 Adams 115 Saunders 90 Scotts Bluff 90 Platte 86 Otoe 85 Madison 68 Furnas 68 Red Willow 66 Dawson 59 Cedar 59 York 58 Hamilton 55 Dakota 53 Cheyenne 50 Cuming 50 Gage 50 Saline 48 Thurston 48 Custer 45 Knox 43 Phelps 42 Dawes 41 Box Butte 41 Seward 37 Clay 34 Holt 32 Nemaha 32 Burt 32 Sheridan 29 Thayer 26 Colfax 25 Dixon 24 Jefferson 24 Richardson 23 Kearney 23 Nuckolls 22 Chase 21 Dundy 21 Merrick 21 Johnson 20 Greeley 19 Keith 18 Howard 18 Wayne 16 Boone 15 Webster 14 Butler 14 Kimball 14 Pierce 13 Antelope 13 Frontier 12 Hitchcock 11 Morrill 11 Fillmore 10 Valley 9 Stanton 9 Sherman 8 Deuel 8 Garfield 8 Nance 8 Polk 8 Pawnee 8 Harlan 7 Gosper 6 Franklin 6 Boyd 5 Cherry 5 Garden 5 Sioux 4 Arthur 3 Grant 3 Keya Paha 3 McPherson 2 Logan 2 Hayes 2 Banner 1 Blaine 1 Loup 1 Perkins 1 Rock 1 Wheeler 0 Thomas 0 Hooker 0 Brown https://experience.arcgis.com/experience/ece0db09da4d4ca68252c3967aa1e9dd/page/page_0/
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https://coronavirus.idaho.gov/
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Arkansas (1,770 Total Positive Cases) Ashley (1,637 Total Positive Cases) Baxter (2,629 Total Positive Cases) Benton (25,025 Total Positive Cases) Boone (3,329 Total Positive Cases) Bradley (1,247 Total Positive Cases) Calhoun (344 Total Positive Cases) Carroll (2,575 Total Positive Cases) Chicot (1,551 Total Positive Cases) Clark (1,831 Total Positive Cases) Clay (1,562 Total Positive Cases) Cleburne (1,753 Total Positive Cases) Cleveland (791 Total Positive Cases) Columbia (1,926 Total Positive Cases) Conway (1,974 Total Positive Cases) Craighead (12,123 Total Positive Cases) Crawford (6,163 Total Positive Cases) Crittenden (5,358 Total Positive Cases) Cross (1,818 Total Positive Cases) Dallas (664 Total Positive Cases) Desha (1,204 Total Positive Cases) Drew (1,858 Total Positive Cases) Faulkner (10,596 Total Positive Cases) Franklin (1,500 Total Positive Cases) Fulton (1,024 Total Positive Cases) Garland (8,354 Total Positive Cases) Grant (1,383 Total Positive Cases) Greene (5,482 Total Positive Cases) Hempstead (1,628 Total Positive Cases) Hot Spring (4,382 Total Positive Cases) Howard (1,348 Total Positive Cases) Independence (3,451 Total Positive Cases) Izard (1,555 Total Positive Cases) Jackson (3,065 Total Positive Cases) Jefferson (8,041 Total Positive Cases) Johnson (2,488 Total Positive Cases) Lafayette (444 Total Positive Cases) Lawrence (1,905 Total Positive Cases) Lee (1,597 Total Positive Cases) Lincoln (3,045 Total Positive Cases) Little River (1,031 Total Positive Cases) Logan (1,965 Total Positive Cases) Lonoke (5,939 Total Positive Cases) Madison (1,333 Total Positive Cases) Marion (861 Total Positive Cases) Miller (3,363 Total Positive Cases) Missing County Info (2,885 Total Positive Cases) Mississippi (5,234 Total Positive Cases) Monroe (730 Total Positive Cases) Montgomery (653 Total Positive Cases) Nevada (717 Total Positive Cases) Newton (646 Total Positive Cases) Ouachita (1,963 Total Positive Cases) Perry (677 Total Positive Cases) Phillips (1,602 Total Positive Cases) Pike (877 Total Positive Cases) Poinsett (2,926 Total Positive Cases) Polk (1,652 Total Positive Cases) Pope (7,167 Total Positive Cases) Prairie (785 Total Positive Cases) Pulaski (33,624 Total Positive Cases) Randolph (1,831 Total Positive Cases) Saline (10,370 Total Positive Cases) Scott (867 Total Positive Cases) Searcy (615 Total Positive Cases) Sebastian (13,517 Total Positive Cases) Sevier (2,341 Total Positive Cases) Sharp (1,445 Total Positive Cases) St. Francis (3,310 Total Positive Cases) Stone (921 Total Positive Cases) Union (3,327 Total Positive Cases) Van Buren (1,117 Total Positive Cases) Washington (27,620 Total Positive Cases) White (6,467 Total Positive Cases) Woodruff (552 Total Positive Cases) Yell (3,037 Total Positive Cases)
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Aitkin County: 1,126 Anoka County: 31,709 Becker County: 2,923 Beltrami County: 3,202 Benton County: 4,278 Big Stone County: 471 Blue Earth County: 5,544 Brown County: 2,218 Carlton County: 2,882 Carver County: 7,136 Cass County: 2,119 Chippewa County: 1,336 Chisago County: 4,663 Clay County: 6,655 Clearwater County: 689 Cook County: 117 Cottonwood County: 1,302 Crow Wing County: 4,939 Dakota County: 34,045 Dodge County: 1,425 Douglas County: 3,819 Faribault County: 1,120 Fillmore County: 1,305 Freeborn County: 2,596 Goodhue County: 3,655 Grant County: 448 Hennepin County: 95,579 Houston County: 1,451 Hubbard County: 1,539 Isanti County: 2,898 Itasca County: 2,904 Jackson County: 886 Kanabec County: 1,018 Kandiyohi County: 5,628 Kittson County: 384 Koochiching County: 612 Lac Qui Parle County: 664 Lake County: 673 Lake of the Woods County: 204 Le Sueur County: 2,185 Lincoln County: 494 Lyon County: 3,071 Mahnomen County: 421 Marshall County: 708 Martin County: 1,732 McLeod County: 3,308 Meeker County: 2,025 Mille Lacs County: 2,175 Morrison County: 3,155 Mower County: 3,815 Murray County: 925 Nicollet County: 2,329 Nobles County: 3,763 Norman County: 428 Olmsted County: 11,042 Otter Tail County: 4,678 Pennington County: 1,016 Pine County: 2,727 Pipestone County: 980 Polk County: 3,327 Pope County: 751 Ramsey County: 41,132 Red Lake County: 322 Redwood County: 1,425 Renville County: 1,400 Rice County: 6,372 Rock County: 1,127 Roseau County: 1,669 Scott County: 12,396 Sherburne County: 8,397 Sibley County: 1,110 St. Louis County: 14,172 Stearns County: 18,234 Steele County: 2,833 Stevens County: 712 Swift County: 858 Todd County: 2,348 Traverse County: 281 Wabasha County: 1,778 Wadena County: 1,221 Waseca County: 1,963 Washington County: 20,854 Watonwan County: 1,078 Wilkin County: 641 Winona County: 3,996 Wright County: 11,930 Yellow Medicine County: 955 https://mndps.maps.arcgis.com/apps/opsdashboard/index.html#/f28f84968c1148129932c3bebb1d3a1a
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Total Positive Cases 77,551827.2 per 10,000 people Confirmed 73,813 Probable 3,738 Residents of Long-Term Care Facilities 2,125 Positive Cases by County New Castle County 44,073 Kent County 12,746 Sussex County 20,550 Unknown 182 Deaths in State of Delaware Total Deaths 1,0818.9 per 10,000 people Confirmed 974 Probable 107 Residents of Long-Term Care Facilities 573 https://myhealthycommunity.dhss.delaware.gov/locations/state
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https://coronavirus.utah.gov/case-counts/#
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https://app.powerbigov.us/view?r=eyJrIjoiMjA2ZThiOWUtM2FlNS00MGY5LWFmYjUtNmQwNTQ3Nzg5N2I2IiwidCI6ImU0YTM0MGU2LWI4OWUtNGU2OC04ZWFhLTE1NDRkMjcwMzk4MCJ9
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Abbeville Rate (per 100k): 6,662.05 Cases--Confirmed positives: 1,634, Probable: 196 Deaths--Confirmed: 23, Probable: 6 Aiken Rate (per 100k): 6,277.8 Cases--Confirmed positives: 10,727, Probable: 2,142 Deaths--Confirmed: 145, Probable: 24 Allendale Rate (per 100k): 7,470.07 Cases--Confirmed positives: 649, Probable: 34 Deaths--Confirmed: 10, Probable: 3 Anderson Rate (per 100k): 8,051.03 Cases--Confirmed positives: 16,308, Probable: 1,086 Deaths--Confirmed: 343, Probable: 24 Bamberg Rate (per 100k): 8,474.34 Cases--Confirmed positives: 1,192, Probable: 49 Deaths--Confirmed: 42, Probable: 0 Barnwell Rate (per 100k): 9,024.25 Cases--Confirmed positives: 1,883, Probable: 163 Deaths--Confirmed: 35, Probable: 7 Beaufort Rate (per 100k): 6,472.97 Cases--Confirmed positives: 12,436, Probable: 940 Deaths--Confirmed: 139, Probable: 7 Berkeley Rate (per 100k): 4,882.25 Cases--Confirmed positives: 11,127, Probable: 1,449 Deaths--Confirmed: 127, Probable: 14 Calhoun Rate (per 100k): 7,208.14 Cases--Confirmed positives: 1,049, Probable: 62 Deaths--Confirmed: 26, Probable: 3 Charleston Rate (per 100k): 6,611.72 Cases--Confirmed positives: 27,201, Probable: 5,330 Deaths--Confirmed: 339, Probable: 44 Cherokee Rate (per 100k): 7,584.64 Cases--Confirmed positives: 4,346, Probable: 154 Deaths--Confirmed: 112, Probable: 4 Chester Rate (per 100k): 9,235.83 Cases--Confirmed positives: 2,978, Probable: 180 Deaths--Confirmed: 50, Probable: 2 Chesterfield Rate (per 100k): 5,691.13 Cases--Confirmed positives: 2,598, Probable: 797 Deaths--Confirmed: 75, Probable: 5 Clarendon Rate (per 100k): 6,685.43 Cases--Confirmed positives: 2,256, Probable: 253 Deaths--Confirmed: 80, Probable: 4 Colleton Rate (per 100k): 5,873.61 Cases--Confirmed positives: 2,213, Probable: 584 Deaths--Confirmed: 69, Probable: 10 Darlington Rate (per 100k): 8,120.93 Cases--Confirmed positives: 5,410, Probable: 1,496 Deaths--Confirmed: 118, Probable: 13 Dillon Rate (per 100k): 10,649.96 Cases--Confirmed positives: 3,246, Probable: 266 Deaths--Confirmed: 61, Probable: 7 Dorchester Rate (per 100k): 5,845.5 Cases--Confirmed positives: 9,517, Probable: 3,025 Deaths--Confirmed: 133, Probable: 13 Edgefield Rate (per 100k): 7,542.19 Cases--Confirmed positives: 2,056, Probable: 245 Deaths--Confirmed: 20, Probable: 8 Fairfield Rate (per 100k): 7,714.68 Cases--Confirmed positives: 1,724, Probable: 131 Deaths--Confirmed: 55, Probable: 5 Florence Rate (per 100k): 9,795.87 Cases--Confirmed positives: 13,547, Probable: 1,403 Deaths--Confirmed: 321, Probable: 28 Georgetown Rate (per 100k): 6,151.88 Cases--Confirmed positives: 3,856, Probable: 1,621 Deaths--Confirmed: 85, Probable: 34 Greenville Rate (per 100k): 10,266.23 Cases--Confirmed positives: 53,748, Probable: 1,714 Deaths--Confirmed: 667, Probable: 44 Greenwood Rate (per 100k): 8,320.74 Cases--Confirmed positives: 5,892, Probable: 266 Deaths--Confirmed: 115, Probable: 12 Hampton Rate (per 100k): 6,846.32 Cases--Confirmed positives: 1,316, Probable: 179 Deaths--Confirmed: 34, Probable: 5 Horry Rate (per 100k): 6,670.79 Cases--Confirmed positives: 23,620, Probable: 5,183 Deaths--Confirmed: 338, Probable: 95 Jasper Rate (per 100k): 5,952.18 Cases--Confirmed positives: 1,790, Probable: 75 Deaths--Confirmed: 34, Probable: 1 Kershaw Rate (per 100k): 7,401.84 Cases--Confirmed positives: 4,926, Probable: 608 Deaths--Confirmed: 80, Probable: 13 Lancaster Rate (per 100k): 7,181.77 Cases--Confirmed positives: 7,039, Probable: 742 Deaths--Confirmed: 106, Probable: 10 Laurens Rate (per 100k): 7,751.92 Cases--Confirmed positives: 5,232, Probable: 200 Deaths--Confirmed: 114, Probable: 8 Lee Rate (per 100k): 8,616.59 Cases--Confirmed positives: 1,450, Probable: 161 Deaths--Confirmed: 48, Probable: 2 Lexington Rate (per 100k): 7,154.48 Cases--Confirmed positives: 21,374, Probable: 3,095 Deaths--Confirmed: 343, Probable: 22 McCormick Rate (per 100k): 6,794.89 Cases--Confirmed positives: 643, Probable: 64 Deaths--Confirmed: 14, Probable: 3 Marion Rate (per 100k): 8,611.41 Cases--Confirmed positives: 2,640, Probable: 226 Deaths--Confirmed: 77, Probable: 9 Marlboro Rate (per 100k): 8,285.47 Cases--Confirmed positives: 2,164, Probable: 451 Deaths--Confirmed: 35, Probable: 7 Newberry Rate (per 100k): 8,530.18 Cases--Confirmed positives: 3,279, Probable: 480 Deaths--Confirmed: 71, Probable: 8 Oconee Rate (per 100k): 9,071.48 Cases--Confirmed positives: 7,216, Probable: 298 Deaths--Confirmed: 91, Probable: 4 Orangeburg Rate (per 100k): 8,241.37 Cases--Confirmed positives: 7,102, Probable: 339 Deaths--Confirmed: 179, Probable: 1 Pickens Rate (per 100k): 10,984.05 Cases--Confirmed positives: 13,937, Probable: 682 Deaths--Confirmed: 194, Probable: 21 Richland Rate (per 100k): 7,736.45 Cases--Confirmed positives: 32,165, Probable: 3,386 Deaths--Confirmed: 386, Probable: 35 Saluda Rate (per 100k): 6,042.1 Cases--Confirmed positives: 1,237, Probable: 105 Deaths--Confirmed: 28, Probable: 5 Spartanburg Rate (per 100k): 8,398.77 Cases--Confirmed positives: 26,858, Probable: 2,723 Deaths--Confirmed: 500, Probable: 58 Sumter Rate (per 100k): 6,982.69 Cases--Confirmed positives: 7,452, Probable: 632 Deaths--Confirmed: 125, Probable: 15 Union Rate (per 100k): 7,270.46 Cases--Confirmed positives: 1,986, Probable: 232 Deaths--Confirmed: 56, Probable: 4 Williamsburg Rate (per 100k): 9,407.93 Cases--Confirmed positives: 2,857, Probable: 438 Deaths--Confirmed: 57, Probable: 15 York Rate (per 100k): 7,216.55 Cases--Confirmed positives: 20,277, Probable: 1,747 Deaths--Confirmed: 236, Probable: 16