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Everything posted by niman
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24 UK Variant B.1.1.7 SARS CoV2 COVID Sequences From San Diego Co California have not been made public and will be assigned UNK numbers below, which will be updated when available. These cases are included the CDC US map of B.1.1.7 cases, which currently includes 32 in California. USA/CA-CDC-STM-UNK1/2020, USA/CA-CDC-STM-UNK2/2020, USA/CA-CDC-STM-UNK3/2020, USA/CA-CDC-STM-UNK4/2020, USA/CA-CDC-STM-UNK5/2020, USA/CA-CDC-STM-UNK6/2020, USA/CA-CDC-STM-UNK7/2020, USA/CA-CDC-STM-UNK8/2020, USA/CA-CDC-STM-UNK9/2020, USA/CA-CDC-STM-UNK10/2020, USA/CA-CDC-STM-UNK11/2020. USA/CA-CDC-STM-UNK12/2020, USA/CA-CDC-STM-UNK13/2020, USA/CA-CDC-STM-UNK14/2020, USA/CA-CDC-STM-UNK15/2020, USA/CA-CDC-STM-UNK16/2020, USA/CA-CDC-STM-UNK17/2020, USA/CA-CDC-STM-UNK18/2020m USA/CA-CDC-STM-UNK19/2020, USA/CA-CDC-STM-UNK20/2020, USA/CA-CDC-STM-UNK21/2020, USA/CA-CDC-STM-UNK22/2020, USA/CA-CDC-STM-UNK23/2020, USA/CA-CDC-STM-UNK24/2020. USA/CA-CDC-STM-131/2020 12/30 43F USA/CA-CDC-STM-130/2020 12/30 46M USA/CA-CDC-STM-127/2020 12/30 22F USA/CA-CDC-STM-126/2020 12/30 49F USA/CA-CDC-STM-105/2020 12/29 12F USA/CA-CDC-STM-087/2020 12/29 17M USA/CA-CDC-STM-082/2020 12/29 34M USA/CA-CDC-STM-080/2020 12/29 36M USA/CA-CDC-STM-078/2020 12/29 65F USA/CA-CDC-STM-077/2020 12/29 2F USA/CA-CDC-STM-076/2020 12/29 37F USA/CA-CDC-STM-073/2020 12/26 37M USA/CA-CDC-STM-071/2020 12/26 6M USA/CA-CDC-STM-070/2020 12/26 44F USA/CA-CDC-STM-069/2020 12/26 34F USA/CA-CDC-STM-067/2020 12/26 27M USA/CA-CDC-STM-064/2020 12/26 31M USA/CA-CDC-STM-062/2020 12/27 23M USA/CA-CDC-STM-061/2020 12/27 21F USA/CA-CDC-STM-050/2020 12/28 55F USA/CA-CDC-STM-037/2020 12/28 45F USA/CA-CDC-STM-022/2020 12/29 1M Two dozen new variant cases were confirmed on Jan. 4 from specimens collected from Dec. 27 through Dec. 31 and tested at the San Diego-based laboratory Helix and its partner Illumina under a Centers for Disease Control and Prevention surveillance project. New cases have been identified in San Diego, Chula Vista, La Mesa, and Lakeside. The cases are among multiple age groups. While the four youngest cases are under 10 and the oldest is over 70, the average age of the variant cases to date is 36, the same as the overall average for all confirmed cases in the county to date. https://www.countynewscenter.com/32-covid-19-variant-cases-identified-in-san-diego-county/
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28 UK Variant B.1.1.7 COVID Sequence From Dublin Ireland
niman replied to niman's topic in Sequences (COVID)
Ireland/D-NVRL-20IRL12372/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=53.31869140467002%2C-6.505803939912291&z=10+ -
28 UK Variant B.1.1.7 COVID Sequence From Dublin Ireland
niman replied to niman's topic in Sequences (COVID)
Ireland/D-NVRL-20IRL12591/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=53.31869140467002%2C-6.505803939912291&z=10+ -
28 UK Variant B.1.1.7 COVID Sequence From Dublin Ireland
niman replied to niman's topic in Sequences (COVID)
Ireland/D-NVRL-20IRL12095/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=53.31869140467002%2C-6.505803939912291&z=10+ -
28 UK Variant B.1.1.7 COVID Sequence From Dublin Ireland
niman replied to niman's topic in Sequences (COVID)
Ireland/D-NVRL-20IRL15991/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=53.31869140467002%2C-6.505803939912291&z=10+ -
28 UK Variant B.1.1.7 COVID Sequence From Dublin Ireland
niman replied to niman's topic in Sequences (COVID)
Ireland/D-NVRL-20IRL15880/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=53.31869140467002%2C-6.505803939912291&z=10+