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Everything posted by niman
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Three UK COVID Variant Sequences From South Korea ex-UK
niman replied to niman's topic in Sequences (COVID)
South Korea/KDCA0001/2020 12/22 39F matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=36.87318708428132%2C127.40110269551155&z=8 -
Korea Disease Control and Prevention Agency has released (at GISAID) three UK COVID variant sequences, South Korea/KDCA0001/2020, South Korea/KDCA0002/2020, South Korea/KDCA0003/2020, collected on Dec 22.
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COVID 501.v2 Confirmed Narita Airport Ciba Japan ex-South Africa
niman replied to niman's topic in Japan (2019-nCoV)
South African coronavirus virus first confirmed in Japan Arrived in Narita on the 19th December 29, 2020 0:15 New coronavirus It was confirmed that a woman arriving at Narita Airport from South Africa on the 19th of this month was infected with a new mutated coronavirus that was different from the one spreading in the United Kingdom. This is the first time that an infection with this virus has been found by inspection at a domestic quarantine station. According to the Ministry of Health, Labor and Welfare, the infection was confirmed in a woman in her thirties who arrived at Narita Airport from South Africa on the 19th of this month. Inspections at the airport quarantine station confirmed infection with the new coronavirus, and then the samples collected were analyzed by the National Institute of Infectious Diseases and found to be a mutated virus found in South Africa. This is the first time that a domestic quarantine station has confirmed the infection, and although it is different from the mutant virus that is spreading in the United Kingdom, it is said that it may be more infectious than a normal virus as well. .. In addition, it was newly confirmed that six men and women in their teens to 40s who arrived at Haneda Airport from the United Kingdom from the 1st to the 24th of this month were infected with the mutant virus that is spreading locally. It was. This time, the seven people who were confirmed to be infected were waiting at the accommodation facility, so none of them had close contact with them. This brings the total number of confirmed infections to the mutant virus to 15 people. -
It was confirmed that a woman arriving at Narita Airport from South Africa on the 19th of this month was infected with a new mutated coronavirus that was different from the one spreading in the United Kingdom. This is the first time that an infection with this virus has been found by inspection at a domestic quarantine station. According to the Ministry of Health, Labor and Welfare, the infection was confirmed in a woman in her thirties who arrived at Narita Airport from South Africa on the 19th of this month. https://www3.nhk.or.jp/news/html/20201228/k10012789001000.html
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Malta/MDxMDH12/2020 12/19 F matching 5 non-synonymous changes the UK variant in and around the receptor binding domain, including N501Y map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=36.46567787367293%2C13.460056598437507&z=8
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Malta/MDxMDH10/2020 12/19 75F matching 5 non-synonymous changes the UK variant in and around the receptor binding domain, including N501Y map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=36.46567787367293%2C13.460056598437507&z=8
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Mater Dei Hospital has released (at GISAID) two partial Spike gene sequences, Malta/MDxMDH10/2020 & Malta/MDxMDH1s/2020 from two females collected Dec 19, which match 5 non-synonymous changes that match the consensus UK variant sequence in and around the receptor binding domain, including codon for N501Y.
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Malta/MDxMDH13/2020 12/19 M matching 5 non-synonymous changes the UK variant in and around the receptor binding domain, including N501Y map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=36.46567787367293%2C13.460056598437507&z=8
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Mater Dei Hospital has released (at GISAID) a partial Spike gene sequence, Malta/MDxMDH13/2020, matching 5 non-synonymous changes the UK variant in and around the receptor binding domain, including N501Y, from a Dec 19 collection from a traveler from UK.
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COVID 501.v2 Sequence In Helsinki Finland ex-South Africa
niman replied to niman's topic in Sequences (COVID)
Finland/74HEL/2020 12/19 matched 501.v2 with 3 AAs deleted in Spike protein and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=60.23019660139374%2C23.27016031662926&z=7 -
University of Helsinki has released (at GISAID) a COVID 501.v2 sequence, Finland/74HEL/2020, from a Dec 19 collection from a traveler from South Africa.
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Finland/69HEL/2020 12/18 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=60.23019660139374%2C23.27016031662926&z=7
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University of Helsinki has released a UK COVID variant sequence, Finland/69HEL/2020, from a Dec 18 collection.
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UK COVID Variant Sequence from Helsinki Finland ex-London
niman replied to niman's topic in Sequences (COVID)
Finland/53HEL/2020 12/19 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=60.13894854569927%2C24.158920879882817&z=7 -
University of Helsinki has released a UK variant sequence, Finland/53HEL/2020, (at GISAID) from Dec 19 from a London traveler.
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Sweden/20-53787/2020 12/20 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=59.36777658262821%2C17.850042456200146&z=10
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The Public Health Agency of Sweden has released a UK COVID variant sequence (at GISAID) from a 27F traveler from London collected Dec 20.
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Portugal/PT2092/2020 12/20 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2095/2020 12/19 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2091/2020 12/20 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2094/2020 12/20 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2096/2020 12/19 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2097/2020 12/19 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2098/2020 12/19 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9
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Portugal/PT2099/2020 12/18 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=32.76613437906353%2C-17.455937465054788&z=9