niman

isolate SARS-CoV-2/Human/USA/CA-CDC-LC1064285/2023 collected by Laboratory Corporation of America collection date 2023-09-27 isolation source Nasal Swabs geographic location USA: California host Homo sapiens host disease COVID-19 host sex female host age 56 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.768 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-17 Accession: SAMN37852842 ID: 37852842 https://www.ncbi.nlm.nih.gov/biosample/37852842

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=1.3662619180377809%2C103.77968614023436&z=11

Singapore/R73MR129/2023 Singapore 10/6/23 collection Spike ins16MPLF NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=51.4332236919905%2C-0.593561656622319&z=16

England/CLIMB-CM7YMYNT/2023 England 10/4/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C17766T NSP13 C18894T (NSP14) Spike L455S NS6 P57L NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=51.42056644679402%2C-0.5603091225623791&z=16

England/CLIMB-CM7Y8CKK/2023 England 10/4/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C17766T NSP13 C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=51.450507302445814%2C-0.638141944047359&z=16

England/CLIMB-CM7YFPIS/2023 England 10/4/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C17766T NSP13 C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=51.41421231823297%2C-0.5407542851806557&z=15

England/CLIMB-CM7YGY73/2023 England 10/4/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C17766T NSP13 C18894T (NSP14) Spike L455S NS6 P57L NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=47.2616590065803%2C5.970768093114933&z=13

France/BFC-IPP23104/2023 Besancon 10/03/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=47.26219066743606%2C6.026729702001652&z=12

France/BFC-IPP23117/2023 Besancon 10/3/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=48.93068557581634%2C2.3411842310517628&z=13

France/IDF-IPP22831/2023 Saint-Denis 10/2/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=48.913006609992436%2C2.3329444849580128&z=13

France/IDF-IPP22830/2023 Saint-Denis 10/2/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=47.32063171976232%2C5.052789815907079&z=14

France/BFC-IPP22868/2023 Dijon 10/2/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=48.8477753958575%2C2.760147258398451&z=12

France/IDF-IPP22916/2023 Jossigny 10/2/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) C9142T (NSP4) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=47.2740738644698%2C5.045552216210956&z=11

France/BFC-IPP22866/2023 Dijon 10/2/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1