niman

Ireland/LK-UHL-671819/2023 Limerick University Hospital Limerick 9/22/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.82019033135337%2C-73.62863143612388&z=11

USA/NY-CDC-QDX85698800/2023 New York 9/24/23 collection 53M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 K1689R

isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85698800/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-24 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex male host age 53 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-10 Accession: SAMN37738116 ID: 37738116 https://www.ncbi.nlm.nih.gov/biosample/37738116

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.24104217971387%2C-74.09005721737388&z=11

USA/NY-CDC-QDX85698992/2023 New York 9/26/23 collection 19F Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85698992/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-26 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex female host age 19 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-10 Accession: SAMN37738038 ID: 37738038 https://www.ncbi.nlm.nih.gov/biosample/37738038

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=35.859050002097455%2C-79.47243308593748&z=10

USA/NC-CDC-LC1063242/2023 North Carolina 9/29/23 collection 72F Spike ins16MPLF, V483del NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1

isolate SARS-CoV-2/Human/USA/NC-CDC-LC1063242/2023 collected by Laboratory Corporation of America collection date 2023-09-29 isolation source Nasal Swabs geographic location USA: North Carolina host Homo sapiens host disease COVID-19 host sex female host age 72 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.179 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-10 Accession: SAMN37737804 ID: 37737804 https://www.ncbi.nlm.nih.gov/biosample/37737804

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=42.41570539725592%2C-74.33769798164063&z=10

USA/NY-CDC-QDX85474806/2023 New York 9/21/23 collection 62F Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 T1269I

isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85474806/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-21 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex female host age 62 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-07 Accession: SAMN37713428 ID: 37713428 https://www.ncbi.nlm.nih.gov/biosample/37713428

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=43.819150786402%2C-79.4190701264099&z=11

Canada/ON-PHL-23-33964/2023 Ontario 9/29/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=35.55935561569608%2C140.1611234455078&z=12

Japan/PG-572986/2023 Chiba 9/13/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NS3 T229I

https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.75789034824627%2C-75.00621111361374&z=10

USA/NY-CDC-QDX85528244/2023 New York 9/23/23 collection 17M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.19703568944139%2C-74.00079330135826&z=11

USA/NY-CDC-QDX85698992/2023 New York 9/26/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.699662080580374%2C-73.50640853573326&z=10

USA/NY-CDC-QDX85698800/2023 New York 9/24/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 K1689R

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.676358084859004%2C-73.80120163885128&z=11

USA/NY-CDC-QDX85641413/2023 New York 9/26/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 T1269I