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niman

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  1. niman
    LOCUS LC200936 1739 bp cRNA linear VRL 08-DEC-2016 DEFINITION Influenza A virus (A/teal/Tottori/2/2016(H5N6)) HA gene for hemagglutinin, complete cds. ACCESSION LC200936 VERSION LC200936.1 KEYWORDS . SOURCE Influenza A virus (A/teal/Tottori/2/2016(H5N6)) ORGANISM Influenza A virus (A/teal/Tottori/2/2016(H5N6)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 AUTHORS Soda,K., Ito,H., Usui,T., Ozaki,H., Murase,T., Yamaguchi,T. and Ito,T. TITLE H5N6 highly pathogenic avian influenza virus isolates in Japan in 2016-17 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1739) AUTHORS Soda,K., Ito,H., Usui,T., Ozaki,H., Murase,T., Yamaguchi,T. and Ito,T. TITLE Direct Submission JOURNAL Submitted (05-DEC-2016) Contact:Kosuke Soda Tottori University, Avian Zoonosis Research Center,Faculty of Agriculture; 4-101 Koyama-cho Minami, Tottori, Tottori 680-8553, Japan URL :http://www.tottori-u.ac.jp/ FEATURES Location/Qualifiers source 1..1739 /organism="Influenza A virus (A/teal/Tottori/2/2016(H5N6))" /mol_type="viral cRNA" /strain="A/teal/Tottori/2/2016" /serotype="H5N6" /host="Anas crecca" /db_xref="taxon:1925556" /segment="4" /country="Japan: Tottori" /collection_date="2016-11-15" gene 15..1715 /gene="HA" CDS 15..1715 /gene="HA" /codon_start=1 /product="hemagglutinin" /protein_id="BAW32343.1" /translation="MEKIVLLLAVVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGRLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERTNPA NDLCYPGNLNDYEELKHLLSRINHFEKTLIIPKSSWPNHETSGVSAACPYQGVPSFFR NVVWLTKKNDAYPTIKMSYNNTNGEDLLILWGIHHSNNAAEQTNLYKNPTTYVSVGTS TLNQRLVPKIATRSQVNGQQGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKGD STIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLRN SPLRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADRESTQKAIDGV TNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENER TLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYNYPQYSE EARLKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRICI " ORIGIN 1 ttcaatctgt caaaatggag aaaatagtgc ttcttcttgc agtggttagc cttgttaaaa 61 gtgatcagat ttgcattggt taccatgcaa acaactcgac agagcaggtt gacacgataa 121 tggaaaaaaa cgtcactgtt acacatgccc aagacatact ggaaaagaca cacaacggga 181 ggctctgcga tctgaatgga gtgaaacctc tgattttaaa ggattgtagt gtagctggat 241 ggcttcttgg aaacccaatg tgcgacgaat tcatcagagt gccggaatgg tcttacatag 301 tggagaggac taacccagcc aatgacctct gttacccagg gaacctcaat gactatgaag 361 aactgaaaca cctattgagc agaataaatc attttgagaa gactctgatc atccccaaga 421 gttcttggcc caatcatgaa acatcagggg tgagcgcagc atgcccatac cagggagtgc 481 cctccttttt cagaaatgtg gtatggctta ccaagaagaa cgatgcatac ccaacaataa 541 agatgagcta caataatacc aatggggaag atcttttgat actgtggggg attcatcatt 601 ccaacaatgc agcagagcag acaaatctct ataaaaaccc aaccacctat gtttccgttg 661 ggacatcaac attgaaccag agattggtgc caaaaatagc tactagatcc caagtaaacg 721 ggcaacaagg aagaatggat ttcttctgga caattttaaa accgaatgat gcaatccact 781 ttgagagtaa tggaaatttt attgctccag aatatgcata caaaatagtc aagaaagggg 841 actcaacaat tatgaaaagt gaaatggaat atggccactg caacaccaaa tgtcaaactc 901 caataggggc gataaactct agtatgccat tccacaatat acaccctctc accattgggg 961 agtgccccaa atacgtgaaa tcaaacaaat tagtccttgc gactggactc agaaatagtc 1021 ctttaagaga aagaagaaga aaaagaggac tatttggagc tatagcaggg ttcatagagg 1081 gaggatggca aggaatggta gatggttggt atgggtacca ccatagcaat gaacagggga 1141 gtgggtacgc tgcagacaga gaatccaccc aaaaggcaat agatggagtt accaataagg 1201 tcaactcgat aatcgacaaa atgaacactc aatttgaggc cgttggaagg gagtttaata 1261 acttagaacg gagaatagag aatttaaata agaaaatgga agacggattc ctagatgtct 1321 ggacttacaa tgctgaactt ttagttctca tggaaaatga gagaacttta gattttcacg 1381 attcaaatgt aaaaaacctt tatgacaaag tccgactaca gcttagggat aatgcaaagg 1441 agctaggtaa tggttgtttc gagttctatc ataaatgtga taatgaatgt atggaaagtg 1501 taagaaatgg gacgtataac tatccccagt attcagaaga agcaagatta aaaagggaag 1561 aaataagcgg agtgaaattg gaatcaatag gaacttacca aatactgtca atttattcaa 1621 cagtggcgag ttccctagca ctggcaatca ttgtggctgg tctatcttta tggatgtgct 1681 ccaatgggtc gttacaatgc agaatttgca tttaaatttg tgagctcaaa ttgcaatta
  2. niman
    Tottori University has released a full H5N6 sequence from a Teal in Tottori Japan, A/teal/Tottori/2/2016
  3. niman
    Descriptions Align Segment-ID Name Score E-Value Identity EPI668886 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI641400 A/Yunnan/0127/2015 (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI587628 A/Yunnan/14564/2015 (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI587620 A/Yunnan/14563/2015 (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI691537 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 6 (NA) 2544.0 0.000000e+00 1379/1380 (99%) EPI668878 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 6 (NA) 2544.0 0.000000e+00 1379/1380 (99%) EPI668742 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 6 (NA) 2544.0 0.000000e+00 1379/1380 (99%) EPI587557 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 6 (NA) 2544.0 0.000000e+00 1379/1380 (99%) EPI691543 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI668862 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI668853 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI658710 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI658030 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI657641 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI587533 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI659158 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2536.6 0.000000e+00 1377/1379 (99%) EPI657833 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2536.6 0.000000e+00 1377/1379 (99%) EPI657665 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 6 (NA) 2536.6 0.000000e+00 1377/1379 (99%) EPI657649 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 6 (NA) 2536.6 0.000000e+00 1377/1379 (99%) EPI656777 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 6 (NA) 2536.6 0.000000e+00 1377/1379 (99%) EPI659102 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2534.7 0.000000e+00 1376/1378 (99%) EPI691550 A/environment/Yunnan/YN25/2015 (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI668870 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI664604 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI658694 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI657705 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI657697 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI657689 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI657633 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI641397 A/chicken/Yunnan/25A/2015 (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI587549 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1377/1380 (99%) EPI587541 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 6 (NA) 2532.9 0.000000e+00 1376/1380 (99%) EPI664564 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 6 (NA) 2531.0 0.000000e+00 1376/1379 (99%) EPI658686 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2531.0 0.000000e+00 1376/1379 (99%) EPI658006 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 6 (NA) 2531.0 0.000000e+00 1376/1379 (99%) EPI656873 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 6 (NA) 2527.3 0.000000e+00 1376/1380 (99%) EPI657657 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 6 (NA) 2525.5 0.000000e+00 1375/1379 (99%) EPI587573 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 6 (NA) 2523.6 0.000000e+00 1376/1380 (99%) EPI668814 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI664540 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI657801 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI657513 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI641395 A/chicken/Yunnan/22/2015 (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI641393 A/chicken/Yunnan/19/2015 (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI658742 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1372/1377 (99%) EPI668894 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI668846 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI668806 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI602414 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI601944 A/chicken/Dongguan/1100/2014 (A/H0) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI599294 A/chicken/Shenzhen/552/2013 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI530056 A/duck/Jiangxi/95/2014 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI839149 A/Gallinula chloropus/Guangdong/GZ174/2014 (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI687500 A/Goose/ Guangdong /JG125/2013（H5N6） (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI668797 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI656721 A/duck/Hunan/12.07 YGK098-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI602493 A/chicken/Shenzhen/2269/2013 (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI599322 A/chicken/Shenzhen/2464/2013 (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI550765 A/duck/Laos/XBY004/2014 (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI550754 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 6 (NA) 2499.6 0.000000e+00 1371/1380 (99%) EPI656601 A/chicken/Hunan/12.28 YYGK034-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2497.8 0.000000e+00 1370/1379 (99%) EPI656657 A/duck/Hunan/12.07 YYGK113-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI656641 A/duck/Hunan/12.07 YYGK111-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI601070 A/chicken/Jiangxi/13259/2014 (A/H0) segment 6 (NA) 2494.1 0.000000e+00 1371/1381 (99%) EPI599315 A/chicken/Shenzhen/2396/2013 (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI658870 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2492.3 0.000000e+00 1355/1358 (99%) EPI656649 A/duck/Hunan/12.07 YYGK112-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2488.6 0.000000e+00 1369/1380 (99%) EPI656633 A/duck/Hunan/12.07 YYGK110-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI656625 A/duck/Hunan/12.07 YYGK108-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2488.6 0.000000e+00 1369/1380 (99%) EPI602319 A/chicken/Jiangxi/13205/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602312 A/chicken/Jiangxi/13201/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602305 A/chicken/Jiangxi/13199/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602298 A/chicken/Jiangxi/13197/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602274 A/chicken/Jiangxi/13238/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602267 A/chicken/Jiangxi/13235/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602260 A/chicken/Jiangxi/13231/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602253 A/chicken/Jiangxi/13221/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602236 A/chicken/Jiangxi/13264/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602229 A/chicken/Jiangxi/13258/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602222 A/chicken/Jiangxi/13251/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602208 A/chicken/Jiangxi/13247/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602201 A/chicken/Jiangxi/13241/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602155 A/chicken/Jiangxi/13266/2014 (A/H10N6) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI602048 A/chicken/Dongguan/2818/2013 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1369/1380 (99%) EPI601464 A/chicken/Jiangxi/13211/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601453 A/chicken/Jiangxi/13198/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601443 A/chicken/Jiangxi/13196/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601406 A/chicken/Jiangxi/13253/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601394 A/chicken/Jiangxi/13237/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601342 A/chicken/Jiangxi/13272/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601197 A/chicken/Jiangxi/13216/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601190 A/chicken/Jiangxi/13215/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601180 A/chicken/Jiangxi/13212/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601171 A/chicken/Jiangxi/13206/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601162 A/chicken/Jiangxi/13204/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601152 A/chicken/Jiangxi/13246/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601126 A/chicken/Jiangxi/13228/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601117 A/chicken/Jiangxi/13219/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601099 A/chicken/Jiangxi/13271/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) EPI601080 A/chicken/Jiangxi/13260/2014 (A/H0) segment 6 (NA) 2488.6 0.000000e+00 1370/1381 (99%) Alignments
  4. niman
    Align Segment-ID Name Score E-Value Identity EPI668887 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI587629 A/Yunnan/14564/2015 (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI641398 A/Yunnan/0127/2015 (A/H5N6) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%) EPI587621 A/Yunnan/14563/2015 (A/H5N6) segment 4 (HA) 3136.7 0.000000e+00 1700/1701 (99%) EPI668863 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%) EPI587534 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%) EPI668743 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI587558 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI587542 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 4 (HA) 3123.8 0.000000e+00 1697/1701 (99%) EPI668879 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI668871 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI658743 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI657658 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI587574 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI587550 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI659159 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI658711 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI658695 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI658687 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI658031 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI657666 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI657650 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI657642 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 4 (HA) 3114.6 0.000000e+00 1696/1701 (99%) EPI668855 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 4 (HA) 3110.9 0.000000e+00 1695/1701 (99%) EPI664605 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%) EPI658007 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%) EPI657834 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%) EPI657706 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%) EPI657698 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%) EPI656874 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 4 (HA) 3109.0 0.000000e+00 1695/1701 (99%) EPI657690 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 4 (HA) 3107.2 0.000000e+00 1694/1700 (99%) EPI658871 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3105.3 0.000000e+00 1693/1699 (99%) EPI657802 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3105.3 0.000000e+00 1697/1704 (99%) EPI657514 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3105.3 0.000000e+00 1697/1704 (99%) EPI659103 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3099.8 0.000000e+00 1696/1704 (99%) EPI691535 A/environment/Yunnan/YN25/2015 (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI668895 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI668815 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI668807 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI668799 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI641396 A/chicken/Yunnan/25A/2015 (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI664565 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 4 (HA) 3094.3 0.000000e+00 1695/1704 (99%) EPI664541 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 4 (HA) 3094.3 0.000000e+00 1695/1704 (99%) EPI668847 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%) EPI656778 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1681/1686 (99%) EPI657634 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 4 (HA) 3085.0 0.000000e+00 1690/1699 (99%) EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 3049.9 0.000000e+00 1687/1704 (99%) EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 3049.9 0.000000e+00 1687/1704 (99%) EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 3049.9 0.000000e+00 1687/1704 (99%) EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 3049.9 0.000000e+00 1687/1704 (99%) EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 3044.4 0.000000e+00 1686/1704 (98%) EPI691534 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 4 (HA) 3031.5 0.000000e+00 1682/1702 (98%) EPI641394 A/chicken/Yunnan/22/2015 (A/H5N6) segment 4 (HA) 3031.5 0.000000e+00 1682/1702 (98%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 3011.2 0.000000e+00 1680/1704 (98%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 3011.2 0.000000e+00 1680/1704 (98%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 3011.2 0.000000e+00 1680/1704 (98%) EPI687498 A/Goose/ Guangdong /JG125/2013（H5N6） (A/H5N6) segment 4 (HA) 3005.6 0.000000e+00 1680/1705 (98%) EPI656626 A/duck/Hunan/12.07 YYGK108-P/2013(H5N6) (A/H5N6) segment 4 (HA) 3005.6 0.000000e+00 1679/1704 (98%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 3005.6 0.000000e+00 1679/1704 (98%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 3005.6 0.000000e+00 1679/1704 (98%) EPI691533 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 4 (HA) 3003.8 0.000000e+00 1677/1702 (98%) EPI641392 A/chicken/Yunnan/19/2015 (A/H5N6) segment 4 (HA) 3003.8 0.000000e+00 1677/1702 (98%) EPI656602 A/chicken/Hunan/12.28 YYGK034-P/2013(H5N6) (A/H5N6) segment 4 (HA) 3000.1 0.000000e+00 1678/1704 (98%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 3000.1 0.000000e+00 1678/1704 (98%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2994.5 0.000000e+00 1677/1704 (98%) EPI599346 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 4 (HA) 2994.5 0.000000e+00 1677/1704 (98%) EPI599292 A/chicken/Shenzhen/552/2013 (A/H5N6) segment 4 (HA) 2994.5 0.000000e+00 1677/1704 (98%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2992.7 0.000000e+00 1674/1701 (98%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2990.8 0.000000e+00 1676/1704 (98%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2989.0 0.000000e+00 1676/1704 (98%) EPI656650 A/duck/Hunan/12.07 YYGK112-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2989.0 0.000000e+00 1676/1704 (98%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2989.0 0.000000e+00 1676/1704 (98%) EPI599320 A/chicken/Shenzhen/2464/2013 (A/H5N6) segment 4 (HA) 2989.0 0.000000e+00 1676/1704 (98%) EPI599313 A/chicken/Shenzhen/2396/2013 (A/H5N6) segment 4 (HA) 2989.0 0.000000e+00 1676/1704 (98%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2989.0 0.000000e+00 1676/1704 (98%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1676/1705 (98%) EPI656658 A/duck/Hunan/12.07 YYGK113-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI656642 A/duck/Hunan/12.07 YYGK111-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI656634 A/duck/Hunan/12.07 YYGK110-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI602491 A/chicken/Shenzhen/2269/2013 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI601941 A/chicken/Dongguan/1100/2014 (A/H0) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI530063 A/environment/Shenzhen/25-24/2013 (A/H5N6) segment 4 (HA) 2983.5 0.000000e+00 1675/1704 (98%) EPI839147 A/Gallinula chloropus/Guangdong/GZ174/2014 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1675/1705 (98%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1675/1705 (98%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2977.9 0.000000e+00 1675/1705 (98%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2977.9 0.000000e+00 1675/1705 (98%) EPI661663 A/goose/Shandong/02.26 GD/2015(H5N6) (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1675/1705 (98%) EPI656722 A/duck/Hunan/12.07 YGK098-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2976.1 0.000000e+00 1673/1703 (98%) EPI768621 A/chicken/Wuxi/SC7393/2015(H5N6) (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1673/1704 (98%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1674/1705 (98%) EPI657498 A/environment/Jilin/04.25 NA004/2015(H5N6) (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1674/1705 (98%) EPI645982 A/chicken/Jiangsu/WXS7393/2014 (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1673/1704 (98%) EPI602103 A/chicken/Shenzhen/2072/2013 (A/H0) segment 4 (HA) 2972.4 0.000000e+00 1673/1704 (98%)
  5. niman
    Isolate name: A/Yunnan/DQ001/2015(H5N6) Isolate ID: EPI_ISL_200837 Passage details/history: Type: A / H5N6 Lineage: Sample information Collection date: 2015-02-10 Host Human Additional host information: Zip code: Patient status: Deceased Last vaccinated: In-vivo pathogenicity test: Location: China / Yunnan Province Additional location information: Patient age: 44 Year(s) Gender: Male Outbreak: Treatment: Specimen source: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Institute of Microbiology, Chinese Academy of Sciences Sample ID given by the submitting laboratory: Authors: Address: Institute of Microbiology, Chinese Academy of Sciences No.1 West Beichen Road, Chaoyang District, Beijing 100105 China Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/Yunnan/DQ001/2015(H5N6)|PB2 2280 EPI668885 PB1 A/Yunnan/DQ001/2015(H5N6)|PB1 2274 EPI668884 PA A/Yunnan/DQ001/2015(H5N6)|PA 2151 EPI668883 HA A/Yunnan/DQ001/2015(H5N6)|HA 1701 EPI668887 NP A/Yunnan/DQ001/2015(H5N6)|NP 1497 EPI668882 NA A/Yunnan/DQ001/2015(H5N6)|NA 1380 EPI668886 MP A/Yunnan/DQ001/2015(H5N6)|MP 982 EPI668881 NS A/Yunnan/DQ001/2015(H5N6)|NS 890 EPI668880 Submitter information Submitter: Bi, Yuhai Submission Date: 2015-10-27 Last modifier: Bi, Yuhai Last modified: 2016-08-07 Address: Institute of Microbiology, Chinese Academy of Sciences No.1 West Beichen Road, Chaoyang District, Beijing 100105 China
  6. niman
    Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ&ll=30.22579510100524%2C-102.29367412929685&z=6
  7. niman
    County Cases Angelina 2 Bastrop 1 Bell 6 Bexar 18 Brazoria 1 Brazos 4 Burnet 1 Cameron 10 Collin 5 Dallas 46 Denton 9 El Paso 3 Ellis 1 Fort Bend 9 Frio 1 Galveston 8 Gray 1 Grayson 1 Gregg 1 Hamilton 1 Harris 70 Hidalgo 4 Hockley 1 Jackson 1 Jefferson 2 Jones 1 Lee 1 Lubbock 1 Matagorda 1 Medina 1 Midland 1 Montgomery 1 Navarro 1 Palo Pinto 1 Parker 1 Randall 1 Rusk 1 Smith 1 Tarrant 26 Travis 14 Upshur 1 Val Verde 1 Walker 1 Williamson 5 Webb 5 Wise 1 Total 274 Dallas Pregnant Registry 18 Texas Preg Reg excl Dallas 46 Total 338
  8. niman

    Texas Zika Tally Page

    niman replied to niman's topic in Texas

    Zika Virus – December 6, 2016 On Nov. 28, DSHS and Cameron County Health and Human Services announced the first case of Zika virus disease likely transmitted by a mosquito in Texas. Local and state public health officials are responding with additional human and mosquito surveillance in the area around the patient’s home and are educating neighbors about reducing the risk of Zika and eliminating mosquito habitat on their property. Read more about the response in the related news release. Through the week ending Dec. 2, Texas has reported 270 cases of illness due to Zika virus. Aside from the one Cameron County case that appears to be transmitted locally by a mosquito, all other cases were associated with travel to an area where Zika was being spread. The count includes 21 pregnant women, two infants infected before birth, and two people who had sexual contact with travelers. Texas Zika Cases by County: County Cases Angelina 2 Bastrop 1 Bell 6 Bexar 18 Brazoria 1 Brazos 4 Burnet 1 Cameron 6 Collin 5 Dallas 46 Denton 9 El Paso 3 Ellis 1 Fort Bend 9 Frio 1 Galveston 8 Gray 1 Grayson 1 Gregg 1 Hamilton 1 Harris 70 Hidalgo 4 Hockley 1 Jackson 1 Jefferson 2 Jones 1 Lee 1 Lubbock 1 Matagorda 1 Medina 1 Midland 1 Montgomery 1 Navarro 1 Palo Pinto 1 Parker 1 Randall 1 Rusk 1 Smith 1 Tarrant 26 Travis 14 Upshur 1 Val Verde 1 Walker 1 Williamson 5 Webb 5 Wise 1 Total 270
  9. niman
    Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ&ll=25.90072358350044%2C-97.49423142865396&z=14
  10. niman
    Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ&ll=25.911303406083086%2C-97.48315926984048&z=16
  11. niman
  12. niman
    Texas Announces Additional Local Zika Cases in Cameron County News Release December 9, 2016 The Texas Department of State Health Services and Cameron County Department of Health and Human Services have identified four additional cases of suspected locally transmitted Zika virus disease in Cameron County. The cases were identified as part of the follow up to the state’s first case of Zika likely transmitted by a mosquito in Texas, announced Nov. 28. The additional patients live in very close proximity to the first case. Though the investigation is ongoing, the infections were likely acquired in that immediate area. They reported getting sick with Zika-like symptoms between Nov. 29 and Dec. 1 and were likely infected several days earlier before mosquito control efforts intensified in that part of Brownsville. None are pregnant women. Testing of people living in an eight-block area around the homes of the identified cases continues but has yet to show any additional evidence of Zika transmission in the rest of that larger area. “These cases were found through careful public health work and collaboration at the local, state and federal levels,” said Dr. John Hellerstedt, DSHS commissioner, “and we’ll continue to follow through with the investigation and additional surveillance to identify other cases and other places experiencing local mosquito transmission of Zika. That information will be crucial to any future public health guidance.” It’s also important that health care providers continue to be on the lookout for Zika and pursue testing pregnant women who have traveled to Mexico or other areas where Zika is spreading and testing anyone with symptoms compatible with Zika. More specific guidance for clinicians is available at www.texaszika.org/healthcareprof.htm. Public health workers from Cameron County and DSHS’ regional office went door to door in the neighborhood last week to provide testing to look for other active Zika infections and educate residents about the illness and how to eliminate mosquito habitats. The education effort ultimately led to the detection of the four additional cases by prompting residents to recognize the symptoms of Zika and contact the health department for testing. Additionally, the City of Brownsville has been spraying for mosquitoes in the vicinity over the last two weeks and has seen a decrease in the number of mosquitoes in the area. “The combination of mosquito control and colder weather has decreased mosquito activity in Cameron County and greatly decreased the probability of more widespread mosquito transmission of Zika right now,” said Dr. Hellerstedt. “However, winters are mild in southern Texas, and mosquito populations can rebound even during short periods of warmer weather. Whenever you see mosquito activity, protect yourself and your family from bites.” People can do that by Using EPA-approved insect repellent. Using air conditioning or window and door screens that are in good repair to keep mosquitoes out of homes. Wearing long pants and long-sleeved shirts that cover exposed skin. Removing standing water in and around homes year-round, including water in trash cans, toys, tires, flower pots and any other container that can hold water. Prompted by the additional cases, the Texas Health and Human Services Commission is expanding the Medicaid benefit for mosquito repellent beyond Dec. 31 for residents of Cameron County. The benefit was recently brought back with news of the first Zika case likely transmitted locally and is in place statewide through Dec. 31. For Cameron County, the benefit will be in place indefinitely as state health officials collect more information about the scope of transmission in Texas. Zika virus is transmitted to people primarily through the bite of an infected mosquito, though it can also spread by sexual contact. The four most common symptoms are fever, itchy rash, joint pain and eye redness. While symptoms are usually minor, Zika can also cause severe birth defects, including microcephaly, and other poor birth outcomes in some women infected during pregnancy. DSHS recommends pregnant women avoid traveling to locations with sustained, local Zika transmission, including Mexico. Pregnant women should also use condoms or avoid sexual contact with partners who have traveled to those areas. Travelers and the general public can find more information at TexasZika.org. -30- (News Media Contact: Chris Van Deusen, DSHS Press Officer, 512-776-7753) DSHS Press Office on Twitter Last updatedDecember 9, 2016
  13. niman
    Texas Announces Additional Local Zika Cases in Cameron County News Release December 9, 2016 The Texas Department of State Health Services and Cameron County Department of Health and Human Services have identified four additional cases of suspected locally transmitted Zika virus disease in Cameron County. The cases were identified as part of the follow up to the state’s first case of Zika likely transmitted by a mosquito in Texas, announced Nov. 28. The additional patients live in very close proximity to the first case. http://dshs.texas.gov/news/releases/2016/20161209.aspx
  14. niman
    Align Segment-ID Name Score E-Value Identity EPI668889 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668880 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668848 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668840 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668811 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668803 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668794 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668737 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI659153 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI658737 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI658705 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI658689 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI658681 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI657796 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI657652 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI657644 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI657508 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI587623 A/Yunnan/14564/2015 (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI587615 A/Yunnan/14563/2015 (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI587552 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI668864 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI668856 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI658025 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI657828 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI657660 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI657636 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI657628 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI587544 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI587528 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 8 (NS) 1543.1 0.000000e+00 837/838 (99%) EPI587536 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 8 (NS) 1541.2 0.000000e+00 836/838 (99%) EPI664599 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI664559 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI664535 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI658001 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI657700 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI657692 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI657684 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 8 (NS) 1537.5 0.000000e+00 836/838 (99%) EPI659097 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI641402 A/Yunnan/0127/2015 (A/H5N6) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI668872 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI656772 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 8 (NS) 1526.5 0.000000e+00 828/829 (99%) EPI587568 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI658865 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1513.5 0.000000e+00 823/825 (99%) EPI838166 A/chicken/Hubei/SIC3/2012 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI497500 A/environment/Chongqing/00516/2013 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI692043 A/pigeon/Hubei/269/2012 (A/H9N2) segment 8 (NS) 1489.5 0.000000e+00 827/838 (98%) EPI838176 A/chicken/Guangxi/SIC15/2013 (A/H9N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI656868 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 8 (NS) 1484.0 0.000000e+00 807/809 (99%) EPI838188 A/chicken/Guangdong/SIC27/2014 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI838185 A/chicken/Guangdong/SIC18/2014 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI838182 A/chicken/Guangxi/SIC19/2014 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI736589 A/Anser fabalis/Anhui/L139/2014 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI692041 A/pigeon/Hubei/228/2012 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI690482 A/Zhongshan/201501/2015 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI683109 A/chicken/Wuhan/JXQL01/2015 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI664567 A/environment/Yunnan/03.17 DQJT0015-Z/2015(Mixed) (A/H5N6) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI658457 A/environment/Jiangxi/05.07 NCJD0095C/2015(H5N6) (A/H5N6) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI658225 A/chicken/Jiangxi/05.06 NCDZT0043B-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI654120 A/Chicken/GD-ZS_720/H7N9/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 824/835 (98%) EPI628714 A/Environment/Guangxi/06891/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI628418 A/Guangdong/037/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627994 A/Guangdong/0065/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627970 A/Guangdong/0081/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627946 A/Guangdong/0069/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627938 A/Guangdong/0066/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627771 A/Guangdong-Guangzhou/XN05586/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627723 A/Guangdong/0024/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627667 A/Guangdong-Guangzhou/XN02778/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI627651 A/Guangdong-Guangzhou/XN00588/2014 (A/H7N9) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI602474 A/chicken/Jiangxi/5195/2014 (A/H10N8) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI602142 A/chicken/Jiangxi/18955/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI602124 A/chicken/Jiangxi/18474/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI602090 A/chicken/Jiangxi/20471/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601956 A/chicken/Jiangxi/1208/2014 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601928 A/chicken/Jiangxi/23786/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601919 A/chicken/Jiangxi/23241/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601891 A/chicken/Jiangxi/1271/2014 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601880 A/chicken/Jiangxi/36242/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601813 A/chicken/Jiangxi/36266/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601580 A/chicken/Jiangxi/1206/2014 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601552 A/chicken/Jiangxi/36240/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601526 A/chicken/Jiangxi/20420/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601506 A/chicken/Jiangxi/36278/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601310 A/chicken/Jiangxi/1247/2014 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI601235 A/duck/Jiangxi/36477/2013 (A/H0) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI600086 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI600079 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI600072 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599820 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599760 A/chicken/Jiangxi/31872/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 827/839 (98%) EPI599746 A/chicken/Jiangxi/30772/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599739 A/chicken/Jiangxi/28563/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599583 A/chicken/Jiangxi/29099/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599562 A/chicken/Jiangxi/28601/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599555 A/chicken/Jiangxi/25970/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599548 A/chicken/Jiangxi/23797/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599527 A/chicken/Jiangxi/21481/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599520 A/chicken/Jiangxi/20976/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599513 A/chicken/Jiangxi/20935/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%) EPI599506 A/chicken/Jiangxi/20506/2013 (A/H9N2) segment 8 (NS) 1482.1 0.000000e+00 826/838 (98%)
  15. niman
    Align Segment-ID Name Score E-Value Identity EPI668888 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI668866 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI668805 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI668796 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI658736 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI657827 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI657683 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI657651 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI657643 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI657635 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI657507 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI587543 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI664598 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%) EPI658000 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%) EPI657795 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%) EPI657699 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%) EPI657691 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 5 (NP) 2763.7 0.000000e+00 1496/1496 (100%) EPI664558 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 5 (NP) 2761.9 0.000000e+00 1495/1495 (100%) EPI658024 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 5 (NP) 2761.9 0.000000e+00 1495/1495 (100%) EPI587535 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 5 (NP) 2761.9 0.000000e+00 1496/1497 (99%) EPI668882 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI668874 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI668858 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI668850 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI668812 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI668736 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI657659 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI656867 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1494/1494 (100%) EPI587622 A/Yunnan/14564/2015 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI587614 A/Yunnan/14563/2015 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI587567 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI587551 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI587527 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI659152 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2758.2 0.000000e+00 1495/1496 (99%) EPI659096 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2758.2 0.000000e+00 1495/1496 (99%) EPI658704 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 5 (NP) 2758.2 0.000000e+00 1495/1496 (99%) EPI656771 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 5 (NP) 2756.3 0.000000e+00 1492/1492 (100%) EPI658680 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI657627 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 5 (NP) 2754.5 0.000000e+00 1495/1497 (99%) EPI658688 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2752.6 0.000000e+00 1494/1496 (99%) EPI691544 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 5 (NP) 2745.2 0.000000e+00 1492/1495 (99%) EPI691538 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 5 (NP) 2745.2 0.000000e+00 1492/1495 (99%) EPI658864 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 5 (NP) 2737.9 0.000000e+00 1486/1488 (99%) EPI680855 A/chicken/Zhejiang/C71916/2013 (A/H9N2) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI680839 A/quail/Zhejiang/2A6/2013 (A/H9N2) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI681127 A/chicken/Zhejiang/925117/2014 (A/H9N2) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI680862 A/chicken/Zhejiang/C19/2013 (A/H9N2) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI680858 A/chicken/Zhejiang/C1/2013 (A/H9N2) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI680853 A/chicken/Zhejiang/C7199/2013 (A/H9N2) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI641401 A/Yunnan/0127/2015 (A/H5N6) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI509116 A/Fujian/05/2013 (A/H7N9) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI683071 A/chicken/Taizhou/TZJF02/2015 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI681129 A/chicken/Zhejiang/925134/2014 (A/H9N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI680854 A/chicken/Zhejiang/C71914/2013 (A/H9N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI680852 A/chicken/Zhejiang/C7195/2013 (A/H9N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI680851 A/chicken/Zhejiang/C4910/2013 (A/H9N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI680850 A/chicken/Zhejiang/C496/2013 (A/H9N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI680848 A/chicken/Zhejiang/C489/2013 (A/H9N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638105 A/Anhui/1-YK_RG202/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638098 A/Anhui/1-YK_RG201/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638091 A/Anhui/1-YK_RG200/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638084 A/Anhui/1-YK_RG199/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638077 A/Anhui/1-YK_RG198/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638070 A/Anhui/1-YK_RG197/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638063 A/Anhui/1-YK_RG196/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638056 A/Anhui/1-YK_RG195/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638049 A/Anhui/1-YK_RG194/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638042 A/Anhui/1-YK_RG193/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638035 A/Anhui/1-YK_RG192/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638028 A/Anhui/1-YK_RG191/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638021 A/Anhui/1-YK_RG190/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638014 A/Anhui/1-YK_RG189/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638007 A/Anhui/1-YK_RG188/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI638000 A/Anhui/1-YK_RG187/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637993 A/Anhui/1-YK_RG186/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637986 A/Anhui/1-YK_RG185/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637979 A/Anhui/1-YK_RG184/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637972 A/Anhui/1-YK_RG183/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637965 A/Anhui/1-YK_RG182/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637958 A/Anhui/1-YK_RG181/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637951 A/Anhui/1-YK_RG180/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637944 A/Anhui/1-YK_RG179/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637937 A/Anhui/1-YK_RG178/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637930 A/Anhui/1-YK_RG177/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637923 A/Anhui/1-YK_RG176/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637916 A/Anhui/1-YK_RG174/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637909 A/Anhui/1-YK_RG173/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637902 A/Anhui/1-YK_RG172/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637895 A/Anhui/1-YK_RG171/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637888 A/Anhui/1-YK_RG170/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637881 A/Anhui/1-YK_RG169/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637874 A/Anhui/1-YK_RG168/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637867 A/Anhui/1-YK_RG167/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637860 A/Anhui/1-YK_RG166/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637832 A/Anhui/1-YK_RG162/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637825 A/Anhui/1-YK_RG161/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637818 A/Anhui/1-YK_RG160/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637811 A/Anhui/1-YK_RG159/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637804 A/Anhui/1-YK_RG158/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI637797 A/Anhui/1-YK_RG157/2013 (A/H7N9) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%)
  16. niman
    Align Segment-ID Name Score E-Value Identity EPI668893 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI668843 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI668810 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI668802 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI668793 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 3 (PA) 3956.6 0.000000e+00 2148/2151 (99%) EPI668854 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI668740 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI659155 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI658707 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI657638 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI657630 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI587554 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI657646 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 3 (PA) 3916.0 0.000000e+00 2138/2147 (99%) EPI587538 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 3 (PA) 3914.2 0.000000e+00 2140/2151 (99%) EPI668883 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI668876 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI668868 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI668859 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI659099 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI658683 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI658027 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI657830 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI657662 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI587625 A/Yunnan/14564/2015 (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI587570 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI587530 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI658739 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI658691 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI658003 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI657798 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI657702 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI657694 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI657686 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI657510 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI587617 A/Yunnan/14563/2015 (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI587546 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI657654 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 3 (PA) 3904.9 0.000000e+00 2138/2150 (99%) EPI664601 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI656774 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 3 (PA) 3901.2 0.000000e+00 2139/2152 (99%) EPI664537 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 3 (PA) 3897.6 0.000000e+00 2132/2143 (99%) EPI627213 A/Fujian/25/2015 (A/H7N9) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI627117 A/Guangdong/15SF030/2015 (A/H7N9) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI628684 A/Guangdong/15SF054/2015 (A/H7N9) segment 3 (PA) 3869.9 0.000000e+00 2132/2151 (99%) EPI628620 A/Environment/Guangdong/21231/2015 (A/H7N9) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI627469 A/Fujian/1/2015 (A/H7N9) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI627309 A/Fujian/8/2015 (A/H7N9) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI627045 A/Guangdong/15SF081/2015 (A/H7N9) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI566127 A/Fujian/09273/2015 (A/H7N9) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI541773 A/Taiwan/3/2013 (A/H7N9) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI769574 A/Fujian/16/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI628628 A/Environment/Guangdong/21275/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI627493 A/Fujian/20/2014 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI627461 A/Fujian/2/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI627381 A/Guangdong/02497/2014 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI627293 A/Fujian/19/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI627229 A/Fujian/23/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI627101 A/Fujian/17/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI626997 A/Guangdong/15SF080/2015 (A/H7N9) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI641342 A/Yunnan/0127/2015 (A/H5N6) segment 3 (PA) 3860.6 0.000000e+00 2130/2151 (99%) EPI769566 A/Fujian/10/2015 (A/H7N9) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI656374 A/GD-54/2015/H7N9/2015-01-27 (A/H7N9) segment 3 (PA) 3856.9 0.000000e+00 2128/2148 (99%) EPI627221 A/Fujian/24/2015 (A/H7N9) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI627133 A/Zhejiang/1/2015 (A/H7N9) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI621113 A/Quzhou/1/2015 (A/H7N9) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI566080 A/Guizhou/03240/2015 (A/H7N9) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI628692 A/Guangdong/15SF055/2015 (A/H7N9) segment 3 (PA) 3853.2 0.000000e+00 2129/2151 (98%) EPI692637 A/chicken/Henan/F246/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI692635 A/chicken/Henan/117/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI692633 A/chicken/Henan/114/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI680771 A/chicken/Zhejiang/3C19/2013 (A/H9N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI680758 A/chicken/Zhejiang/C38/2013 (A/H9N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI680733 A/quail/Zhejiang/2A6/2013 (A/H9N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI663521 A/duck/Sunan/040802/2013 (A/H0) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI628636 A/Environment/Guangdong/21286/2015 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI628180 A/Hunan/09193/2014 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI627253 A/Fujian/7/2015 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI627157 A/Zhejiang/3/2015 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI621114 A/Quzhou/2/2015 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI596649 A/Shanghai/02/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI576875 A/chicken/Jiangxi/12544/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI576873 A/chicken/Jiangxi/12492/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI576562 A/chicken/Guangdong/G3/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI545207 A/duck/Sunan/040802G/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI542255 A/Shanghai/MH01/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI532269 A/chicken/Zhejiang/C483/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI532268 A/chicken/Zhejiang/C481/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI509114 A/Fujian/05/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI509065 A/Hunan/0070/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI503521 A/environment/Guangdong/25/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI497934 A/Nanjing/6/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI497890 A/Wuxi/4/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI497844 A/environment/Suzhou/8/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI490975 A/Environment/Guangdong/C13281030/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI490967 A/Environment/Guangdong/C13281025/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI468345 A/environment/Hangzhou/109-2/2013(H5N1) (A/H5N1) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI467323 A/Wuxi/2/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI457873 A/chicken/Jiangsu/S002/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI457721 A/environment/Fujian/SC337/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI457713 A/environment/Henan/SC232/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI457689 A/environment/Shandong/SD039/2013 (A/H7N9) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%)
  17. niman
    Align Segment-ID Name Score E-Value Identity EPI668892 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI668842 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI668801 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI668809 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI668792 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI668852 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 2 (PB1) 4178.2 0.000000e+00 2270/2274 (99%) EPI668741 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI664603 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI658029 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI658005 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI657696 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI657664 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI657640 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI587556 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI664563 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 2 (PB1) 4170.9 0.000000e+00 2268/2273 (99%) EPI657704 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 2 (PB1) 4169.0 0.000000e+00 2267/2272 (99%) EPI656776 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 2 (PB1) 4169.0 0.000000e+00 2267/2272 (99%) EPI668860 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI658741 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI658693 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI657800 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI657512 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI587572 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI587548 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI587532 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI658685 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4165.3 0.000000e+00 2267/2273 (99%) EPI587540 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 2 (PB1) 4165.3 0.000000e+00 2267/2274 (99%) EPI668869 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 2 (PB1) 4163.5 0.000000e+00 2267/2274 (99%) EPI657648 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 2 (PB1) 4163.5 0.000000e+00 2266/2272 (99%) EPI668875 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI657832 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4161.6 0.000000e+00 2263/2268 (99%) EPI657688 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 2 (PB1) 4161.6 0.000000e+00 2263/2268 (99%) EPI668884 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI587627 A/Yunnan/14564/2015 (A/H5N6) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI587619 A/Yunnan/14563/2015 (A/H5N6) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI658869 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4154.2 0.000000e+00 2265/2273 (99%) EPI664539 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI659157 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI657656 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 2 (PB1) 4150.5 0.000000e+00 2259/2265 (99%) EPI656872 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 2 (PB1) 4150.5 0.000000e+00 2257/2262 (99%) EPI658709 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 2 (PB1) 4143.2 0.000000e+00 2263/2273 (99%) EPI659101 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 2 (PB1) 4128.4 0.000000e+00 2255/2265 (99%) EPI641403 A/Yunnan/0127/2015 (A/H5N6) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI683148 A/chicken/Wenzhou/YHQL04/2014 (A/H9N2) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI846037 A/chicken/Jiangsu/JS4539/2014 (A/H9N2) segment 2 (PB1) 4078.5 0.000000e+00 2252/2274 (99%) EPI838018 A/chicken/Zhejiang/SIC30/2014 (A/H9N2) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%) EPI683160 A/chicken/Wenzhou/WZTSLG02/2015 (A/H7N9) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%) EPI838012 A/chicken/Zhejiang/SIC32/2014 (A/H9N2) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI628718 A/Environment/Guangxi/06891/2014 (A/H7N9) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI628630 A/Environment/Guangdong/21275/2015 (A/H7N9) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI627383 A/Guangdong/02497/2014 (A/H7N9) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI627119 A/Guangdong/15SF030/2015 (A/H7N9) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI583739 A/chicken/Yantai/2468/2013 (A/H9N2) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI656352 A/GD-30/2015/H7N9/2015-01-22 (A/H7N9) segment 2 (PB1) 4056.4 0.000000e+00 2246/2271 (98%) EPI628702 A/Environment/Hunan/07626/2015 (A/H7N9) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI627471 A/Fujian/1/2015 (A/H7N9) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI627231 A/Fujian/23/2015 (A/H7N9) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI627047 A/Guangdong/15SF081/2015 (A/H7N9) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI627023 A/Guangdong/15SF027/2015 (A/H7N9) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI583783 A/chicken/Yantai/2469/2013 (A/H9N2) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI627455 A/Fujian/3/2015 (A/H7N9) segment 2 (PB1) 4054.5 0.000000e+00 2247/2274 (98%) EPI628694 A/Guangdong/15SF055/2015 (A/H7N9) segment 2 (PB1) 4052.7 0.000000e+00 2247/2274 (98%) EPI846029 A/chicken/Anhui/AH120/2015 (A/H9N2) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI683158 A/chicken/Taizhou/TZJF02/2015 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI656456 A/GD-81/2015/H7N9/2015-02-10 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2245/2271 (98%) EPI656336 A/GD-27/2015/H7N9/2015-01-21 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2245/2271 (98%) EPI628622 A/Environment/Guangdong/21231/2015 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI627239 A/Fujian/21/2015 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI627199 A/Guangdong/15SF017/2015 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI627191 A/Guangdong/15SF020/2015 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI626983 A/Jiangsu/22184/2015 (A/H7N9) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI594396 A/chicken/Yantai/2529/2013 (A/H0) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI627215 A/Fujian/25/2015 (A/H7N9) segment 2 (PB1) 4047.1 0.000000e+00 2246/2274 (98%) EPI656472 A/GD-92/2015/H7N9/2015-02-26 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2242/2268 (98%) EPI656432 A/GD-72/2015/H7N9/2015-02-07 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2244/2271 (98%) EPI656312 A/GD-20/2015/H7N9/2015-01-15 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2244/2271 (98%) EPI656304 A/GD-17/2015/H7N9/2015-01-11 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2244/2271 (98%) EPI628766 A/Zhejiang/8/2015 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI628638 A/Environment/Guangdong/21286/2015 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI626999 A/Guangdong/15SF080/2015 (A/H7N9) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI599780 A/chicken/Jiangxi/34682/2013 (A/H9N2) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI594380 A/chicken/Yantai/2303/2013 (A/H9N2) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI594373 A/chicken/Yantai/2243/2013 (A/H9N2) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI838004 A/chicken/Shandong/SIC21/2014 (A/H9N2) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI683150 A/chicken/Taizhou/TZJF05/2015 (A/H9N2) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI656464 A/GD-76/2015/H7N9/2015-02-10 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2241/2268 (98%) EPI628790 A/Environment/Shandong-Taian/EV03/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628782 A/Shandong-Taian/01/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628734 A/Anhui/33223/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628726 A/Anhui/33228/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628686 A/Guangdong/15SF054/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2244/2274 (98%) EPI628678 A/Environment/Shandong-Taian/EV02/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628670 A/Environment/Shandong-Taian/EV01/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628662 A/Anhui/33227/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI628606 A/Environment/Anhui/39280/2015 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI576593 A/chicken/Guangdong/SD1/2013 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI576592 A/chicken/Guangdong/G3/2013 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI576591 A/chicken/Guangdong/G2/2013 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI568751 A/goose/Jiangsu/1027/2013 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI545787 A/chicken/Suzhou/040201H/2013 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%)
  18. niman
    Align Segment-ID Name Score E-Value Identity EPI668891 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI668800 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 1 (PB2) 4205.9 0.000000e+00 2279/2280 (99%) EPI668795 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI668808 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI668885 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 1 (PB2) 4174.5 0.000000e+00 2273/2280 (99%) EPI587626 A/Yunnan/14564/2015 (A/H5N6) segment 1 (PB2) 4174.5 0.000000e+00 2273/2280 (99%) EPI668867 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI668851 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI668739 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI587618 A/Yunnan/14563/2015 (A/H5N6) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI587555 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI587547 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI587539 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 1 (PB2) 4169.0 0.000000e+00 2272/2280 (99%) EPI668877 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI668861 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI587571 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI587531 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI657799 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4165.3 0.000000e+00 2271/2279 (99%) EPI657511 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4165.3 0.000000e+00 2271/2279 (99%) EPI658740 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4163.5 0.000000e+00 2270/2278 (99%) EPI641404 A/Yunnan/0127/2015 (A/H5N6) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI659156 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI658708 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 1 (PB2) 4159.8 0.000000e+00 2270/2279 (99%) EPI657655 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 1 (PB2) 4152.4 0.000000e+00 2268/2278 (99%) EPI664538 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 1 (PB2) 4150.5 0.000000e+00 2267/2277 (99%) EPI664602 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI664562 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI658028 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI657703 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI657695 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI657687 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI657663 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI657639 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI658004 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 1 (PB2) 4146.8 0.000000e+00 2267/2278 (99%) EPI657647 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 1 (PB2) 4146.8 0.000000e+00 2267/2278 (99%) EPI658692 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI658684 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4143.2 0.000000e+00 2267/2279 (99%) EPI659100 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4137.6 0.000000e+00 2263/2274 (99%) EPI657631 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 1 (PB2) 4137.6 0.000000e+00 2266/2279 (99%) EPI656775 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 1 (PB2) 4137.6 0.000000e+00 2267/2280 (99%) EPI657831 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4132.1 0.000000e+00 2265/2279 (99%) EPI658868 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 1 (PB2) 4124.7 0.000000e+00 2260/2273 (99%) EPI668844 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 1 (PB2) 4122.8 0.000000e+00 2265/2281 (99%) EPI656871 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 1 (PB2) 4108.1 0.000000e+00 2260/2277 (99%) EPI654178 A/Environment/GD-ZS_44/H9N2/2013-4 (A/H9N2) segment 1 (PB2) 3984.3 0.000000e+00 2237/2277 (98%) EPI583591 A/chicken/Dongguan/2827/2013 (A/H9N2) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%) EPI837954 A/chicken/Guangdong/SIC14/2013 (A/H9N2) segment 1 (PB2) 3953.0 0.000000e+00 2233/2280 (97%) EPI583661 A/chicken/Dongguan/3550/2013 (A/H9N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%) EPI583619 A/chicken/Dongguan/3056/2013 (A/H9N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%) EPI583500 A/chicken/Shenzhen/1799/2013 (A/H9N2) segment 1 (PB2) 3951.1 0.000000e+00 2233/2280 (97%) EPI654167 A/Environment/GD-YJ_25005/H9N2/2013 (A/H9N2) segment 1 (PB2) 3945.6 0.000000e+00 2230/2277 (97%) EPI628533 A/Environment/Guangdong/47403/2014 (A/H7N9) segment 1 (PB2) 3945.6 0.000000e+00 2232/2280 (97%) EPI583723 A/chicken/Dongguan/4254/2013 (A/H0) segment 1 (PB2) 3945.6 0.000000e+00 2232/2280 (97%) EPI583549 A/chicken/Shenzhen/2403/2013 (A/H9N2) segment 1 (PB2) 3945.6 0.000000e+00 2232/2280 (97%) EPI837990 A/chicken/Guangdong/SIC23/2014 (A/H9N2) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI583675 A/chicken/Shenzhen/3745/2013 (A/H9N2) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI583703 A/silkie chicken/Dongguan/4184/2013 (A/H9N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI583444 A/chicken/Shenzhen/1377/2013 (A/H9N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI628493 A/Guangdong/02124/2014 (A/H7N9) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI628093 A/Guangdong/0012/2014 (A/H7N9) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI503496 A/Huizhou/01/2013 (A/H7N9) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI476698 A/Guangdong/1/2013 (A/H7N9) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI655883 A/GD-13/2014/H7N9/2014-01-03 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2222/2277 (97%) EPI655875 A/GD-12/2014/H7N9/2014-01-03 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2222/2277 (97%) EPI628509 A/Guangdong/24999/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI628485 A/Guangdong/02125/2014 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI628421 A/Guangdong/037/2014 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI627981 A/Environmental/Guangdong/00329/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI627973 A/Guangdong/0081/2014 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI627742 A/Guangdong/0010/2014 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI602023 A/chicken/Dongguan/4190/2013 (A/H0) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI597437 A/chicken/Dongguan/1009/2014 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI597143 A/chicken/Dongguan/1670/2014 (A/H0) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI597129 A/silkie chicken/Dongguan/1644/2014 (A/H0) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI596868 A/silkie chicken/Dongguan/952/2014 (A/H0) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581995 A/chicken/Dongguan/4195/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581920 A/silkie chicken/Dongguan/3990/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581877 A/chicken/Dongguan/3894/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581760 A/silkie chicken/Dongguan/3528/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581754 A/silkie chicken/Dongguan/3526/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581748 A/silkie chicken/Dongguan/3525/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581729 A/chicken/Dongguan/3491/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581722 A/chicken/Dongguan/3488/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581690 A/chicken/Dongguan/3418/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581641 A/silkie chicken/Dongguan/3166/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581634 A/chicken/Dongguan/3146/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581620 A/chicken/Dongguan/3141/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI581613 A/chicken/Dongguan/3112/2013 (A/H7N9) segment 1 (PB2) 3901.2 0.000000e+00 2224/2280 (97%) EPI837953 A/chicken/Guangdong/SIC31/2014 (A/H9N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI656027 A/GD-81/2014/H7N9/2014-01-30 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2221/2277 (97%) EPI655891 A/GD-18/2014/H7N9/2014-01-07 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2221/2277 (97%) EPI655867 A/GD-10/2014/H7N9/2014-01-03 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2221/2277 (97%) EPI628525 A/environment/Guangdong/25003/2013 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI628501 A/Guangdong/02620/2014 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI628453 A/Guangdong/034/2014 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI628445 A/environment/Guangdong/02622/2013 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI628109 A/Guangdong/0026/2014 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI628101 A/Guangdong/0019/2014 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI627997 A/Guangdong/0065/2014 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI627949 A/Guangdong/0069/2014 (A/H7N9) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%)
  19. niman
    Align Segment-ID Name Score E-Value Identity EPI668890 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI668841 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI668813 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI668881 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI668865 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI668857 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI668849 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI668804 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI668798 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI668738 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI664560 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI664536 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI658738 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI658690 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI658682 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI658002 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657797 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657701 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657685 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657653 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657645 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657637 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657629 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI657509 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI587624 A/Yunnan/14564/2015 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI587616 A/Yunnan/14563/2015 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI587553 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI587545 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI587537 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI587529 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI658866 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1805.3 0.000000e+00 979/980 (99%) EPI668873 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI664600 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI659154 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI659098 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI658706 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI658026 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI657693 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI657661 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI587569 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI657829 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI641399 A/Yunnan/0127/2015 (A/H5N6) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI656773 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 7 (MP) 1785.0 0.000000e+00 968/969 (99%) EPI656869 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 7 (MP) 1783.1 0.000000e+00 967/968 (99%) EPI838142 A/chicken/Guangdong/SIC17/2014 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI596715 A/chicken/Wenzhou/3330/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI583836 A/chicken/Suzhou/4957/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI497543 A/environment/Jiangxi/02899/2012 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI497530 A/environment/Jiangxi/02895/2012 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI838129 A/chicken/Fujian/SIC16/2014 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI838124 A/chicken/Hubei/SIC3/2012 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI602131 A/chicken/Jiangxi/18926/2013 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI602123 A/chicken/Jiangxi/18474/2013 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI602081 A/chicken/Jiangxi/19982/2013 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI602070 A/chicken/Jiangxi/19967/2013 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI602062 A/chicken/Jiangxi/19912/2013 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI601359 A/chicken/Jiangxi/1226/2014 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI600106 A/chicken/Jiangxi/21468/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI600092 A/chicken/Jiangxi/19898/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI600085 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI600078 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI600071 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI600057 A/chicken/Jiangxi/17403/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599819 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599540 A/chicken/Jiangxi/23773/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599526 A/chicken/Jiangxi/21481/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599498 A/chicken/Jiangxi/20489/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599477 A/chicken/Jiangxi/20457/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599449 A/chicken/Jiangxi/19934/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599392 A/chicken/Jiangxi/18913/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI599184 A/chicken/Jiangxi/19924/2013 (A/H10N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI591974 A/chicken/Suzhou/4833/2013 (A/H0) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI589862 A/chicken/Jiangxi/18933/2013 (A/H10N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI589854 A/chicken/Jiangxi/18399/2013 (A/H10N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI583829 A/chicken/Suzhou/4954/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI568615 A/chicken/Shaanxi/xa0414/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI557786 A/Anser fabalis/China/HuBS428/2014 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI515841 A/Chicken/Nantong/031-2/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI515833 A/Chicken/Nanjing/023/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI470069 A/chicken/Rizhao/1313/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI470066 A/chicken/Rizhao/723/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI470064 A/chicken/Rizhao/437/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI470063 A/chicken/Rizhao/249/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI470062 A/chicken/Rizhao/85/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI470060 A/chicken/Rizhao/15/2013 (A/H9N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI736588 A/Anser fabalis/Anhui/L139/2014 (A/H9N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI692271 A/chicken/Shandong/WG18/2011 (A/H9N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI652908 A/chicken/Qingdao/017/2014 (A/H9N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI602141 A/chicken/Jiangxi/18955/2013 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI601918 A/chicken/Jiangxi/23241/2013 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI601812 A/chicken/Jiangxi/36266/2013 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI601562 A/chicken/Jiangxi/36247/2013 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI601525 A/chicken/Jiangxi/20420/2013 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI601379 A/chicken/Jiangxi/1243/2014 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI601268 A/chicken/Jiangxi/1269/2014 (A/H0) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI599777 A/chicken/Jiangxi/34609/2013 (A/H10N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI599766 A/chicken/Jiangxi/33542/2013 (A/H9N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI599702 A/chicken/Jiangxi/23259/2013 (A/H10N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI599561 A/chicken/Jiangxi/28601/2013 (A/H9N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI599547 A/chicken/Jiangxi/23797/2013 (A/H9N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%)
  20. niman
    Align Segment-ID Name Score E-Value Identity EPI668894 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI668846 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI668806 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 6 (NA) 2549.5 0.000000e+00 1380/1380 (100%) EPI668814 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 6 (NA) 2538.4 0.000000e+00 1378/1380 (99%) EPI668797 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 6 (NA) 2527.3 0.000000e+00 1376/1380 (99%) EPI658030 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI657641 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 6 (NA) 2521.8 0.000000e+00 1375/1380 (99%) EPI657833 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2520.0 0.000000e+00 1374/1379 (99%) EPI657665 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 6 (NA) 2520.0 0.000000e+00 1374/1379 (99%) EPI657649 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 6 (NA) 2520.0 0.000000e+00 1374/1379 (99%) EPI656777 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 6 (NA) 2520.0 0.000000e+00 1374/1379 (99%) EPI691537 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI668878 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI668742 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI664604 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI658694 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI657705 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI657697 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI657689 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI657633 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI587557 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 6 (NA) 2516.3 0.000000e+00 1374/1380 (99%) EPI664564 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 6 (NA) 2514.4 0.000000e+00 1373/1379 (99%) EPI658686 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2514.4 0.000000e+00 1373/1379 (99%) EPI658006 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 6 (NA) 2514.4 0.000000e+00 1373/1379 (99%) EPI691543 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI668886 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI668862 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI668853 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI658710 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI656873 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI641400 A/Yunnan/0127/2015 (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI587628 A/Yunnan/14564/2015 (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI587620 A/Yunnan/14563/2015 (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI587533 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 6 (NA) 2510.7 0.000000e+00 1373/1380 (99%) EPI659158 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2508.9 0.000000e+00 1372/1379 (99%) EPI659102 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2507.0 0.000000e+00 1371/1378 (99%) EPI691550 A/environment/Yunnan/YN25/2015 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI668870 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI641397 A/chicken/Yunnan/25A/2015 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI587549 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1372/1380 (99%) EPI587541 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 6 (NA) 2505.2 0.000000e+00 1371/1380 (99%) EPI657657 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 6 (NA) 2497.8 0.000000e+00 1370/1379 (99%) EPI587573 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 6 (NA) 2495.9 0.000000e+00 1371/1380 (99%) EPI664540 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI657801 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI657513 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI641395 A/chicken/Yunnan/22/2015 (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI641393 A/chicken/Yunnan/19/2015 (A/H5N6) segment 6 (NA) 2494.1 0.000000e+00 1370/1380 (99%) EPI658742 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2488.6 0.000000e+00 1367/1377 (99%) EPI602493 A/chicken/Shenzhen/2269/2013 (A/H5N6) segment 6 (NA) 2483.0 0.000000e+00 1368/1380 (99%) EPI602414 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 6 (NA) 2477.5 0.000000e+00 1367/1380 (99%) EPI601944 A/chicken/Dongguan/1100/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1367/1380 (99%) EPI599294 A/chicken/Shenzhen/552/2013 (A/H5N6) segment 6 (NA) 2477.5 0.000000e+00 1367/1380 (99%) EPI530056 A/duck/Jiangxi/95/2014 (A/H5N6) segment 6 (NA) 2477.5 0.000000e+00 1367/1380 (99%) EPI658870 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 6 (NA) 2475.6 0.000000e+00 1352/1358 (99%) EPI839149 A/Gallinula chloropus/Guangdong/GZ174/2014 (A/H5N6) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%) EPI687500 A/Goose/ Guangdong /JG125/2013（H5N6） (A/H5N6) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%) EPI656721 A/duck/Hunan/12.07 YGK098-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%) EPI599322 A/chicken/Shenzhen/2464/2013 (A/H5N6) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%) EPI550765 A/duck/Laos/XBY004/2014 (A/H5N6) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%) EPI550754 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 6 (NA) 2471.9 0.000000e+00 1366/1380 (98%) EPI656601 A/chicken/Hunan/12.28 YYGK034-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2470.1 0.000000e+00 1365/1379 (98%) EPI656657 A/duck/Hunan/12.07 YYGK113-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2466.4 0.000000e+00 1365/1380 (98%) EPI656641 A/duck/Hunan/12.07 YYGK111-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2466.4 0.000000e+00 1365/1380 (98%) EPI601070 A/chicken/Jiangxi/13259/2014 (A/H0) segment 6 (NA) 2466.4 0.000000e+00 1366/1381 (98%) EPI599315 A/chicken/Shenzhen/2396/2013 (A/H5N6) segment 6 (NA) 2466.4 0.000000e+00 1365/1380 (98%) EPI775285 A/duck/Guangzhou/018/2014 (A/H5N6) segment 6 (NA) 2460.9 0.000000e+00 1364/1380 (98%) EPI656649 A/duck/Hunan/12.07 YYGK112-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2460.9 0.000000e+00 1364/1380 (98%) EPI656633 A/duck/Hunan/12.07 YYGK110-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI656625 A/duck/Hunan/12.07 YYGK108-P/2013(H5N6) (A/H5N6) segment 6 (NA) 2460.9 0.000000e+00 1364/1380 (98%) EPI602319 A/chicken/Jiangxi/13205/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602312 A/chicken/Jiangxi/13201/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602305 A/chicken/Jiangxi/13199/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602298 A/chicken/Jiangxi/13197/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602274 A/chicken/Jiangxi/13238/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602267 A/chicken/Jiangxi/13235/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602260 A/chicken/Jiangxi/13231/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602253 A/chicken/Jiangxi/13221/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602236 A/chicken/Jiangxi/13264/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602229 A/chicken/Jiangxi/13258/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602222 A/chicken/Jiangxi/13251/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602208 A/chicken/Jiangxi/13247/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602201 A/chicken/Jiangxi/13241/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602155 A/chicken/Jiangxi/13266/2014 (A/H10N6) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI602048 A/chicken/Dongguan/2818/2013 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1364/1380 (98%) EPI601464 A/chicken/Jiangxi/13211/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601453 A/chicken/Jiangxi/13198/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601443 A/chicken/Jiangxi/13196/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601406 A/chicken/Jiangxi/13253/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601394 A/chicken/Jiangxi/13237/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601342 A/chicken/Jiangxi/13272/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601197 A/chicken/Jiangxi/13216/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601190 A/chicken/Jiangxi/13215/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601180 A/chicken/Jiangxi/13212/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601171 A/chicken/Jiangxi/13206/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601162 A/chicken/Jiangxi/13204/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601152 A/chicken/Jiangxi/13246/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601126 A/chicken/Jiangxi/13228/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601117 A/chicken/Jiangxi/13219/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%) EPI601099 A/chicken/Jiangxi/13271/2014 (A/H0) segment 6 (NA) 2460.9 0.000000e+00 1365/1381 (98%)
  21. niman
    Align Segment-ID Name Score E-Value Identity EPI668895 A/Yunnan/DQ002/2015(H5N6) (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI668815 A/environment/Yunnan/07.11 DQENM004/2015(H5N6) (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI668807 A/environment/Yunnan/07.11 DQENM006/2015(H5N6) (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI668799 A/environment/Yunnan/07.11 DQENM015/2015(H5N6) (A/H5N6) segment 4 (HA) 3142.3 0.000000e+00 1701/1701 (100%) EPI668847 A/environment/Yunnan/07.11 DQXY20/2015(H5N6) (A/H5N6) segment 4 (HA) 3131.2 0.000000e+00 1699/1701 (99%) EPI658695 A/chicken/Yunnan/03.15 DQXYL0073-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI658687 A/chicken/Yunnan/03.16 DQJT0068-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI658031 A/environment/Yunnan/03.17 DQJT040/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI657666 A/environment/Yunnan/03.17 DQJT039/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI657650 A/environment/Yunnan/03.15 DQWGH011-2/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI657642 A/environment/Yunnan/03.15 DQWGH010/2015(H5N6) (A/H5N6) segment 4 (HA) 3125.7 0.000000e+00 1698/1701 (99%) EPI664605 A/duck/Hunan/04.14 YYGK0453-1-O/2015(Mixed) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI658007 A/environment/Yunnan/03.15 DQWGH001/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI657834 A/chicken/Jiangxi/04.01 NCJD0137-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI657706 A/environment/Yunnan/03.15 DQWGH008-1/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI657698 A/environment/Yunnan/03.15 DQWGH004/2015(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI656874 A/duck/Hunan/02.26 YYGK265-P/2014(H5N6) (A/H5N6) segment 4 (HA) 3120.1 0.000000e+00 1697/1701 (99%) EPI657690 A/environment/Yunnan/03.15 DQWGH017/2015(H5N6) (A/H5N6) segment 4 (HA) 3118.3 0.000000e+00 1696/1700 (99%) EPI658871 A/duck/Hunan/02.07 YYFQHY19Y-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3116.4 0.000000e+00 1695/1699 (99%) EPI664565 A/environment/Yunnan/03.15 DQWGH008-Z/2015(Mixed) (A/H5N6) segment 4 (HA) 3105.3 0.000000e+00 1697/1704 (99%) EPI668743 A/chicken/Yunnan/02.09 DQXY008L/2015(H5N6) (A/H5N6) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%) EPI659159 A/duck/Yunnan/03.15 DQXYL007-Z-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3103.5 0.000000e+00 1695/1702 (99%) EPI658711 A/duck/Yunnan/03.16 DQXYL0013-O/2015 (A/H5N6) segment 4 (HA) 3103.5 0.000000e+00 1695/1702 (99%) EPI587558 A/Environment/Yunnan/DQ16/2015 (A/H5N6) segment 4 (HA) 3103.5 0.000000e+00 1694/1701 (99%) EPI668887 A/Yunnan/DQ001/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI668863 A/environment/Yunnan/02.09 DQXY005-1E/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI658743 A/chicken/Yunnan/03.16 DQXYL023-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI657658 A/environment/Yunnan/03.15 DQWGH014/2015(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI656778 A/duck/Hunan/01.16 YYGK0204-P/2014(H5N6) (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1683/1686 (99%) EPI587629 A/Yunnan/14564/2015 (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI587534 A/Environment/Yunnan/DQ5/2015 (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1693/1701 (99%) EPI657634 A/environment/Yunnan/03.15 DQWGH012/2015(H5N6) (A/H5N6) segment 4 (HA) 3096.1 0.000000e+00 1692/1699 (99%) EPI641398 A/Yunnan/0127/2015 (A/H5N6) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%) EPI587621 A/Yunnan/14563/2015 (A/H5N6) segment 4 (HA) 3092.4 0.000000e+00 1692/1701 (99%) EPI587542 A/Environment/Yunnan/DQ8/2015 (A/H5N6) segment 4 (HA) 3090.6 0.000000e+00 1691/1701 (99%) EPI668855 A/environment/Yunnan/02.09 DQWGH013-2E/2015(H5N6) (A/H5N6) segment 4 (HA) 3088.7 0.000000e+00 1691/1701 (99%) EPI659103 A/chicken/Yunnan/03.16 DQXYL0063-Z-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3088.7 0.000000e+00 1695/1705 (99%) EPI668879 A/environment/Yunnan/02.10 DQXY053-1E/2015(H5N6) (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%) EPI668871 A/environment/Yunnan/02.09 DQXY009-1E/2015(H5N6) (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%) EPI587574 A/Environment/Yunnan/DQ53/2015 (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%) EPI587550 A/Environment/Yunnan/DQ9/2015 (A/H5N6) segment 4 (HA) 3086.9 0.000000e+00 1691/1701 (99%) EPI664541 A/duck/Yunnan/03.16 DQXYL007-O/2015(Mixed) (A/H5N6) segment 4 (HA) 3083.2 0.000000e+00 1693/1704 (99%) EPI657802 A/chicken/Jiangxi/05.06 NCDZT1174-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3083.2 0.000000e+00 1693/1704 (99%) EPI657514 A/chicken/Yunnan/03.16 DQXYL0034-O/2015(H5N6) (A/H5N6) segment 4 (HA) 3083.2 0.000000e+00 1693/1704 (99%) EPI691535 A/environment/Yunnan/YN25/2015 (A/H5N6) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%) EPI641396 A/chicken/Yunnan/25A/2015 (A/H5N6) segment 4 (HA) 3075.8 0.000000e+00 1689/1701 (99%) EPI550768 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 3016.7 0.000000e+00 1681/1704 (98%) EPI550763 A/duck/Laos/XBY004/2014 (A/H5N6) segment 4 (HA) 3016.7 0.000000e+00 1681/1704 (98%) EPI550759 A/chicken/Laos/XBY003/2014 (A/H5N6) segment 4 (HA) 3016.7 0.000000e+00 1681/1704 (98%) EPI550757 A/duck/Laos/LPQ002/2014 (A/H5N6) segment 4 (HA) 3016.7 0.000000e+00 1681/1704 (98%) EPI550752 A/chicken/Laos/LPQ001/2014 (A/H5N6) segment 4 (HA) 3011.2 0.000000e+00 1680/1704 (98%) EPI691534 A/environment/Yunnan/YN22/2015 (A/H5N6) segment 4 (HA) 3009.3 0.000000e+00 1678/1702 (98%) EPI641394 A/chicken/Yunnan/22/2015 (A/H5N6) segment 4 (HA) 3009.3 0.000000e+00 1678/1702 (98%) EPI691533 A/environment/Yunnan/YN19/2015 (A/H5N6) segment 4 (HA) 2981.6 0.000000e+00 1673/1702 (98%) EPI641392 A/chicken/Yunnan/19/2015 (A/H5N6) segment 4 (HA) 2981.6 0.000000e+00 1673/1702 (98%) EPI599662 A/goose/Shantou/1806/2014 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI599655 A/goose/Shantou/1791/2014 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI599648 A/goose/Shantou/1763/2014 (A/H5N6) segment 4 (HA) 2977.9 0.000000e+00 1674/1704 (98%) EPI687498 A/Goose/ Guangdong /JG125/2013（H5N6） (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1674/1705 (98%) EPI656626 A/duck/Hunan/12.07 YYGK108-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1673/1704 (98%) EPI602412 A/chicken/Dongguan/2690/2013 (A/H5N6) segment 4 (HA) 2972.4 0.000000e+00 1673/1704 (98%) EPI602045 A/chicken/Dongguan/2818/2013 (A/H0) segment 4 (HA) 2972.4 0.000000e+00 1673/1704 (98%) EPI656602 A/chicken/Hunan/12.28 YYGK034-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2966.8 0.000000e+00 1672/1704 (98%) EPI530054 A/duck/Jiangxi/95/2014 (A/H5N6) segment 4 (HA) 2966.8 0.000000e+00 1672/1704 (98%) EPI602419 A/chicken/Dongguan/3363/2013 (A/H5N6) segment 4 (HA) 2961.3 0.000000e+00 1671/1704 (98%) EPI599346 A/chicken/Dongguan/4259/2013 (A/H5N6) segment 4 (HA) 2961.3 0.000000e+00 1672/1705 (98%) EPI599292 A/chicken/Shenzhen/552/2013 (A/H5N6) segment 4 (HA) 2961.3 0.000000e+00 1671/1704 (98%) EPI736914 A/Changsha/1/2014 (A/H5N6) segment 4 (HA) 2959.5 0.000000e+00 1668/1701 (98%) EPI602028 A/chicken/Dongguan/4190/2013 (A/H0) segment 4 (HA) 2957.6 0.000000e+00 1670/1704 (98%) EPI703600 A/goose/Eastern China/S0513/2013 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1670/1704 (98%) EPI681296 A/chicken/Zhejiang/727155/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1671/1705 (98%) EPI656650 A/duck/Hunan/12.07 YYGK112-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1670/1704 (98%) EPI599339 A/duck/Dongguan/3069/2013 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1670/1704 (98%) EPI599320 A/chicken/Shenzhen/2464/2013 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1670/1704 (98%) EPI599313 A/chicken/Shenzhen/2396/2013 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1670/1704 (98%) EPI599299 A/chicken/Shenzhen/1395/2013 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1670/1704 (98%) EPI681295 A/chicken/Zhejiang/727026/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1670/1705 (97%) EPI681294 A/chicken/Zhejiang/727022/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1670/1705 (97%) EPI681284 A/chicken/Zhejiang/727159/2014 (A/H5N2) segment 4 (HA) 2950.2 0.000000e+00 1670/1705 (97%) EPI681283 A/chicken/Zhejiang/727079/2014 (A/H5N2) segment 4 (HA) 2950.2 0.000000e+00 1670/1705 (97%) EPI656658 A/duck/Hunan/12.07 YYGK113-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI656642 A/duck/Hunan/12.07 YYGK111-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI656634 A/duck/Hunan/12.07 YYGK110-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI602491 A/chicken/Shenzhen/2269/2013 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1670/1705 (97%) EPI601941 A/chicken/Dongguan/1100/2014 (A/H0) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI599333 A/silkie chicken/Dongguan/2809/2013 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI599327 A/duck/Dongguan/2685/2013 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI531456 A/duck/Guangdong/GD01/2014 (A/H5N6) segment 4 (HA) 2950.2 0.000000e+00 1669/1704 (97%) EPI839147 A/Gallinula chloropus/Guangdong/GZ174/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI681287 A/goose/Zhejiang/727110/2014 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1669/1705 (97%) EPI668839 A/environment/Yunnan/07.11 DQXY011/2015(H5N6) (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI661807 A/environment/Guangdong/02.11 DGCPSJ050/2015(Mixed) (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI661799 A/environment/Guangdong/02.11 DGQTSJ046E/2015(Mixed) (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI661663 A/goose/Shandong/02.26 GD/2015(H5N6) (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1669/1705 (97%) EPI657498 A/environment/Jilin/04.25 NA004/2015(H5N6) (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1669/1705 (97%) EPI656722 A/duck/Hunan/12.07 YGK098-P/2013(H5N6) (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI602477 A/chicken/Shenzhen/715/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI599285 A/chicken/Shenzhen/433/2013 (A/H5N6) segment 4 (HA) 2944.7 0.000000e+00 1668/1704 (97%) EPI645049 A/swine/Guangdong/1/2014 (A/H5N6) segment 4 (HA) 2942.8 0.000000e+00 1667/1703 (97%) EPI768621 A/chicken/Wuxi/SC7393/2015(H5N6) (A/H5N6) segment 4 (HA) 2939.1 0.000000e+00 1668/1705 (97%)
  22. niman
    Isolate name: A/Yunnan/DQ002/2015(H5N6) Isolate ID: EPI_ISL_200838 Passage details/history: Type: A / H5N6 Lineage: Sample information Collection date: 2015-07-10 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: China / Yunnan Province Additional location information: Patient age: 37 Year(s) Gender: Female Outbreak: Treatment: Specimen source: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Institute of Microbiology, Chinese Academy of Sciences Sample ID given by the submitting laboratory: Authors: Address: Institute of Microbiology, Chinese Academy of Sciences No.1 West Beichen Road, Chaoyang District, Beijing 100105 China Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/Yunnan/DQ002/2015(H5N6)|PB2 2280 EPI668891 PB1 A/Yunnan/DQ002/2015(H5N6)|PB1 2274 EPI668892 PA A/Yunnan/DQ002/2015(H5N6)|PA 2151 EPI668893 HA A/Yunnan/DQ002/2015(H5N6)|HA 1701 EPI668895 NP A/Yunnan/DQ002/2015(H5N6)|NP 1497 EPI668888 NA A/Yunnan/DQ002/2015(H5N6)|NA 1380 EPI668894 MP A/Yunnan/DQ002/2015(H5N6)|MP 982 EPI668890 NS A/Yunnan/DQ002/2015(H5N6)|NS 890 EPI668889 Submitter information Submitter: Bi, Yuhai Submission Date: 2015-10-27 Last modifier: Bi, Yuhai Last modified: 2016-08-07 Address: Institute of Microbiology, Chinese Academy of Sciences No.1 West Beichen Road, Chaoyang District, Beijing 100105 China
  23. niman
    A/Yunnan/DQ002/2015(H5N6) EPI_ISL_200838 H5N6 2280 2274 2151 1701 1497 1380 982 890 --- --- 2015-07-10 A/Yunnan/DQ001/2015(H5N6) EPI_ISL_200837 H5N6 2280 2274 2151 1701 1497 1380 982 890 --- --- 2015-02-10 A/Yunnan/0127/2015 EPI_ISL_195294 H5N6 passage details: E1 2280 2274 2151 1701 1497 1380 982 849 --- --- 2015-02-06 A/Yunnan/14563/2015 EPI_ISL_178261 H5N6 E2 2280 2274 2151 1701 1497 1380 982 838 --- --- 2015-02-06 A/Yunnan/14564/2015 EPI_ISL_178262 H5N6 E1 2280 2274 2151 1701 1497 1380 982 838 --- --- 2015-02-05
  24. niman
    Five sets of 2015 human Yunnan sequences are public at GISAID.
  25. niman
    A severe birth defect linked to Zika quadrupled in Colombia this year By Lena H. Sun December 9 at 11:00 AM Pregnant women await medical examinations at a hospital in Cucuta, Colombia, in early February. (Schneyder Mendoza/European Pressphoto Agency) The number of babies born with microcephaly in Colombia during a Zika outbreak this year more than quadrupled from a year ago, dispelling earlier suggestions that the nation with the second-largest number of infections had somehow escaped the dreaded wave of fetal deformities witnessed in Brazil, the epicenter of the outbreak. In a report released Friday that provides the most detailed information about microcephaly prevalence to date in Colombia, health officials in that country and the Centers for Disease Control and Prevention said 476 cases of microcephaly were identified between February and mid-November, compared with 110 cases reported during the same period in 2015. Of those, 432 were in live births and 44 were pregnancy losses, including abortions and miscarriages. The Zika outbreak began in Brazil in May 2015; Colombia confirmed local transmission of the Zika virus about five months later, in October 2015. But for months, some health officials and experts noted that the number of Colombia’s microcephaly cases has been relatively small despite the 105,000 suspected cases of Zika virus disease that have been reported, including in nearly 20,000 pregnant women. Microcephaly is a severe and rare condition characterized by abnormally small heads and often underdeveloped brains. Other experts have cautioned against making premature predictions about microcephaly cases in Colombia. If a pregnant woman gets infected early in pregnancy, when the risks for microcephaly are greatest, it can take up to eight months for serious birth defects to be evident. [Normal head size at birth doesn't rule out microcephaly, Zika syndrome months later] Data collection in Colombia is also labor-intensive; information is collected at the local level before being transmitted to state and national offices. The findings in Friday’s report provide the first month-by-month analysis of reported cases of microcephaly in Colombia. They include live births, abortions and stillbirths. The data show the peak month for reported cases of microcephaly occurred in July of this year, about 24 weeks, or six months after the peak of the Zika outbreak. In July, there were 94 reported cases of microcephaly, about nine times as many as took place in July 2015. The report confirms earlier findings that Zika poses the greatest risk for fetuses during the first and early second trimesters. “The evidence was compelling,” said Margaret Honein, chief of the birth defects branch at the CDC and one of the authors of Friday’s report. She added: “We expect that every country with a major Zika outbreak will see an increase in microcephaly and severe brain abnormalities.” [Lifelong care, heartaches ahead for babies born with Zika in the U.S.] Even as mosquito season is winding down in the United States, officials said pregnant women and their partners need to remain vigilant. In Florida, which had the first local spread of Zika in the summer, Gov. Rick Scott declared an end to the Zika transmission zone in Miami’s South Beach area on Friday. Texas officials said this week that there have been no additional cases of local spread beyond the one case reported late last month. But as the winter tourism season gets underway in other warm-weather destinations, Honein said it would be dangerous to downplay the risk of Zika-related microcephaly across many of the countries in the Caribbean, and South and Central America where the virus has spread. According to the latest report from the World Health Organization, 29 countries or territories have recorded cases of babies with Zika-related birth defects. Nicaragua is the latest to report two cases of microcephaly. Zika is primarily transmitted through the bite of an Aedes aegyptimosquito, but it can also be passed through sex from a person who has Zika to his or her sex partners, even if the person does not have symptoms. One limitation of Friday's report is that the majority of microcephaly cases did not have laboratory confirmation of maternal Zika virus infection. Honein said it’s possible that blood and tissue specimens were not always collected for infants with microcephaly, or they might not have been submitted in time for accurate testing. Nevertheless, because the data were collected across Colombia, the increase in microcephaly prevalence from the previous year “indicates the magnitude of the increase,” the report said. Differences between the Zika outbreaks in Brazil and Colombia could account for some of the difference in prevalence of microcephaly in the two countries. In Colombia, 50 to 75 percent of the population lives at altitudes about a mile above sea level, where Zika transmission by mosquitoes is unlikely, the report said. Microcephaly is also a difficult birth defect to register because of inconsistent definitions and terminology. Researchers said the frightening accounts of birth defects and the link to Zika reported in Brazil might also have served as an early warning to Colombia. The Colombian Ministry of Health urged women in February to consider delaying pregnancy for six months, which might have affected subsequent birthrates. Abortion is legal in Colombia in cases of fetal abnormality, but it is not clear whether the abortion rate increased during the Zika outbreak. Live births in Colombia dropped by about 18,000 between early February and mid-November compared with the same period from the previous year, the report said. https://www.washingtonpost.com/news/to-your-health/wp/2016/12/09/a-severe-birth-defect-linked-to-zika-quadrupled-in-colombia-this-year/?postshare=3771481302334926&tid=ss_tw&utm_term=.65756c9d89b9
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