niman

FLUR015_USA_USA_2016-08-24 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 4928 14920 84% 0.0 97% KX838904.2 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 4926 14934 84% 0.0 97% KX842449.2 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 4922 14922 84% 0.0 97% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 4922 14922 84% 0.0 97% KX922704.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 4922 14925 84% 0.0 97% KX832731.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 4917 14920 84% 0.0 97% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 4917 14920 84% 0.0 97% KX838905.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 4908 14879 84% 0.0 97% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 4906 14879 84% 0.0 97% KU853012.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 4904 14866 84% 0.0 97% KX673530.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 4895 14870 84% 0.0 97% KX922707.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 4890 14853 84% 0.0 97% KX838906.2 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 4886 14835 84% 0.0 97% KX922708.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 4886 14839 84% 0.0 97% KX922705.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 4881 14774 84% 0.0 97% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 4881 14794 84% 0.0 97% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 4881 14774 84% 0.0 97% KU991811.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 4881 14760 84% 0.0 97% KU647676.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 4877 14763 84% 0.0 97% KX694534.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 4877 14794 84% 0.0 97% KX447510.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 4877 14749 84% 0.0 97% KX247646.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 4877 14781 84% 0.0 97% KU321639.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 4872 14723 84% 0.0 97% KX893855.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 4872 14731 84% 0.0 97% KX856011.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 4872 14765 84% 0.0 97% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 4872 14765 84% 0.0 97% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 4872 14776 84% 0.0 97% KJ776791.2 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 4872 14743 84% 0.0 97% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 4872 14718 84% 0.0 97% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 4872 14720 84% 0.0 97% KX702400.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 4872 14779 84% 0.0 97% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 4872 14765 84% 0.0 97% KX447511.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 4872 14729 84% 0.0 97% KX548902.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 4872 14779 84% 0.0 97% KX369547.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 4872 14742 84% 0.0 97% KU758877.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 4872 14783 84% 0.0 97% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 4872 14767 84% 0.0 97% KX262887.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 4872 14756 84% 0.0 97% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 4872 14767 84% 0.0 97% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 4872 14752 84% 0.0 97% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 4872 14742 84% 0.0 97% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 4872 14752 84% 0.0 97% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 4872 14743 84% 0.0 97% KX087102.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 4872 14732 84% 0.0 97% KU312312.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 4868 14749 84% 0.0 97% KX447517.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 4868 14772 84% 0.0 97% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 4868 14765 84% 0.0 97% KX447514.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 4868 14776 84% 0.0 97% KX447509.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 4868 14723 84% 0.0 97% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 4868 14727 84% 0.0 97% KU870645.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 4868 14752 84% 0.0 97% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 4868 14752 84% 0.0 97% KU926309.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 4868 14742 84% 0.0 97% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 4868 14736 84% 0.0 97% KU922923.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 4868 14756 84% 0.0 97% KU527068.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 4863 14769 84% 0.0 97% KX879604.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 4863 14761 84% 0.0 97% KX447516.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 4863 14732 84% 0.0 97% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 4863 14736 84% 0.0 97% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 4863 14732 84% 0.0 97% KU937936.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 4863 14774 84% 0.0 97% KU729217.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 4863 14760 84% 0.0 97% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 4863 14745 84% 0.0 97% KU365780.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 4861 14723 83% 0.0 97% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 4861 14751 83% 0.0 97% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 4861 14723 83% 0.0 97% KX087101.2 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 4861 14756 83% 0.0 97% KU940228.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 4861 14666 83% 0.0 97% KU940224.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 4861 14727 83% 0.0 97% KU501215.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 4859 14776 84% 0.0 97% KX447513.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 4859 14711 84% 0.0 97% KU820898.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 4859 14745 83% 0.0 97% KU497555.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 4859 14754 84% 0.0 97% KU707826.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 4859 14756 84% 0.0 97% KU501216.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 4859 14754 84% 0.0 97% KU365779.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 4859 14729 84% 0.0 97% KU365778.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 4859 14742 84% 0.0 97% KU365777.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 4857 14720 83% 0.0 97% KX377337.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 4854 14754 84% 0.0 97% KX879603.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 4854 14723 84% 0.0 97% KX806557.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 4854 14711 84% 0.0 97% KX766028.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 4854 14770 84% 0.0 97% KU729218.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 4850 14707 83% 0.0 97% KX056898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 4850 14702 84% 0.0 97% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 4850 14702 84% 0.0 97% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 4845 14711 84% 0.0 97% KX117076.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 4845 14707 83% 0.0 97% KU955590.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 4841 14704 84% 0.0 97% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 4841 14704 84% 0.0 97% KU963796.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 4836 14698 84% 0.0 97% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 4836 14695 84% 0.0 97% KU866423.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 4836 14698 84% 0.0 97% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 4836 14698 84% 0.0 97% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 4836 14698 84% 0.0 97% KU820899.2 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 4818 14561 83% 0.0 97% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 4809 14554 83% 0.0 97% KX813683.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 4805 14567 84% 0.0 97% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 4796 14514 83% 0.0 96% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 4791 14421 84% 0.0 96% KX694532.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 4760 14190 82% 0.0 96% KF993678.1

FLUR022_USA_2016-08-31 matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18511 18511 100% 0.0 99% KX838906.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18500 18500 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18493 18493 100% 0.0 99% KX922708.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18435 18435 100% 0.0 99% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18429 18429 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18429 18429 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18410 18410 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX922704.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX838904.2 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18336 18336 100% 0.0 99% KX280026.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729217.2 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18330 18330 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18330 18330 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18327 18327 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU991811.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18318 18318 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18318 18318 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18318 18318 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18312 18312 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18312 18312 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18309 18309 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18309 18309 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18303 18303 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18303 18303 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18303 18303 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18303 18303 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18303 18303 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18300 18300 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18294 18294 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18294 18294 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18285 18285 100% 0.0 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX247632.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18285 18285 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18282 18282 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18282 18282 99% 0.0 99% KU497555.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18276 18276 100% 0.0 99% KX856011.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU820897.5 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18276 18276 100% 0.0 99% KX446951.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18276 18276 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18276 18276 100% 0.0 99% KX087102.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18276 18276 100% 0.0 99% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU312312.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18273 18273 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18273 18273 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18273 18273 100% 0.0 99% KX087101.2 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18273 18273 100% 0.0 99% KU922960.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18267 18267 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX548902.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18267 18267 100% 0.0 99% KX377337.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18267 18267 100% 0.0 99% KU922923.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18264 18264 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18262 18262 100% 0.0 99% KX893855.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18258 18258 100% 0.0 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18258 18258 100% 0.0 99% KX702400.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18249 18249 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18242 18242 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18236 18236 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18227 18227 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18222 18222 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18222 18222 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18222 18222 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18218 18218 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18218 18218 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18204 18204 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18083 18083 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18060 18060 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18047 18047 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18002 18002 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17879 17879 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17685 17685 99% 0.0 98% JN860885.1

jtladner 10d 1 In collaboration with the Florida Department of Health, we (Center for Genome Sciences, USAMRIID) have generated 11 Zika virus (ZIKV) genomes from urine samples collected from patients in Florida with locally acquired ZIKV infections. All genomes were sequenced using Illumina in combination with RNA Access targeted enrichment. Illumina reads were aligned to BeH819015 (KU365778.1 with missing terminal UTR regions filled with sequence from MR766) and new consensus sequences were generated. A minimum of 3x read depth (in support of the consensus base) was required to make a consensus call. Across the different samples, genome coverage ranged from 57% to 99.8%. All samples were collected from patients in the Miami region during July 28 – August 31 2016. All of these sequences form a phylogenetic clade together with the 4 Florida-derived genomes generated by the Andersen Lab [1 from a locally acquired human infection (http://andersen-lab.com/zika-sequence-local-florida-transmission/) and 3 from Aedes aegypti mosquitoes (http://andersen-lab.com/zika-sequences-miami-mosquitoes/)], 1 genome generated from a patient in Florida with a history of travel to Cuba (also from the Andersen Lab; http://andersen-lab.com/travel-related-cases-florida/) and 1 genome from a patient in Guadeloupe (Atkinson et al.; https://www.ncbi.nlm.nih.gov/nuccore/KX673530). However, the genomes generated from the locally acquired cases in Florida form two distinct subclades within this group, which are separated from each other by 18 substitutions. Ten human cases and two mosquito isolates belong to subclade #1 and two human cases and one mosquito isolate belong to subclade #2. The genome from Guadeloupe is basal to subclade #2, while the genome from the patient with a history of travel to Cuba is basal to subclade #1 in the MCC BEAST tree, but nested within subclade #1 in the ML tree. Based on epidemiological data combined with tMRCA estimates, we believe that these results are most consistent with at least two introductions resulting in local transmission in Florida. Under this hypothesis, we estimate that both introductions likely occurred during the first half of 2016 (median estimates during April 2016). Alternatively, there could have been a single introduction followed by diversification within Florida (and export from Florida). However, based on the molecular clock analysis, this would require an introduction to Florida sometime in 2015 (median estimate during July 2015). http://virological.org/t/zikv-sequence-from-florida/364/3

USAMRIID has released 11 full or partial Zika sequences from Florida. These sequences fall into the same sub-clade formed by Florida sequences released by Scripps and Broad.

jtladner 10d 1 In collaboration with the Florida Department of Health, we (Center for Genome Sciences, USAMRIID) have generated 11 Zika virus (ZIKV) genomes from urine samples collected from patients in Florida with locally acquired ZIKV infections. All genomes were sequenced using Illumina in combination with RNA Access targeted enrichment. Illumina reads were aligned to BeH819015 (KU365778.1 with missing terminal UTR regions filled with sequence from MR766) and new consensus sequences were generated. A minimum of 3x read depth (in support of the consensus base) was required to make a consensus call. Across the different samples, genome coverage ranged from 57% to 99.8%. All samples were collected from patients in the Miami region during July 28 – August 31 2016. All of these sequences form a phylogenetic clade together with the 4 Florida-derived genomes generated by the Andersen Lab [1 from a locally acquired human infection (http://andersen-lab.com/zika-sequence-local-florida-transmission/) and 3 from Aedes aegypti mosquitoes (http://andersen-lab.com/zika-sequences-miami-mosquitoes/)], 1 genome generated from a patient in Florida with a history of travel to Cuba (also from the Andersen Lab; http://andersen-lab.com/travel-related-cases-florida/) and 1 genome from a patient in Guadeloupe (Atkinson et al.; https://www.ncbi.nlm.nih.gov/nuccore/KX673530). However, the genomes generated from the locally acquired cases in Florida form two distinct subclades within this group, which are separated from each other by 18 substitutions. Ten human cases and two mosquito isolates belong to subclade #1 and two human cases and one mosquito isolate belong to subclade #2. The genome from Guadeloupe is basal to subclade #2, while the genome from the patient with a history of travel to Cuba is basal to subclade #1 in the MCC BEAST tree, but nested within subclade #1 in the ML tree. Based on epidemiological data combined with tMRCA estimates, we believe that these results are most consistent with at least two introductions resulting in local transmission in Florida. Under this hypothesis, we estimate that both introductions likely occurred during the first half of 2016 (median estimates during April 2016). Alternatively, there could have been a single introduction followed by diversification within Florida (and export from Florida). However, based on the molecular clock analysis, this would require an introduction to Florida sometime in 2015 (median estimate during July 2015). http://virological.org/t/zikv-sequence-from-florida/364/3

New Florida sequences on upper branch = FLUR001, FLUR002, FLUR005, FLUR006, FLUR007, FLUR008, FLUR009, FLUR013, FLUR015. Lower branch = FLUR011, FLUR022.

Trevor Bedford has posted a phylogenetic tree with 11 Zika sequences from Florida that appear to be generated by USAMRIID. Most or all of these sequences appear to be distinct from sequences released by Scripps and Broad, but all 11 fall onto the same two branches defined by prior Florida sequences http://virological.org/t/zikv-sequence-from-florida/364/10

DOM_2016_BB-0436_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18444 18444 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18442 18442 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX842449.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX922703.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922707.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18417 18417 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18413 18413 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18411 18411 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18408 18408 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18406 18406 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18395 18395 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18348 18348 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18345 18345 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18345 18345 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18339 18339 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18330 18330 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18330 18330 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18330 18330 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18327 18327 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18327 18327 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18321 18321 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18321 18321 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18318 18318 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18318 18318 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18318 18318 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18318 18318 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18318 18318 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18312 18312 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18309 18309 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18309 18309 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365780.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18305 18305 99% 0.0 99% KU497555.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18300 18300 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18300 18300 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156774.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18291 18291 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18291 18291 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18285 18285 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18282 18282 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18282 18282 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18282 18282 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18282 18282 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18282 18282 100% 0.0 99% KU501215.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18276 18276 100% 0.0 99% KX893855.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18276 18276 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18276 18276 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18276 18276 100% 0.0 99% KU870645.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18273 18273 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18273 18273 100% 0.0 99% KX377337.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU955590.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18264 18264 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU820898.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18256 18256 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18249 18249 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18236 18236 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18236 18236 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18236 18236 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18233 18233 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18231 18231 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18218 18218 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18096 18096 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18069 18069 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18006 18006 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17897 17897 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17717 17717 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17717 17717 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17667 17667 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17562 17562 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17411 17411 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16379 16379 100% 0.0 95% KX601167.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16370 16370 100% 0.0 95% KX694533.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16370 16370 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16365 16365 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16193 16193 88% 0.0 99% KX447518.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 13329 13329 100% 0.0 89% KF383115.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 13324 13324 100% 0.0 89% KF268949.1 Select seq gb|KX830960.1| Zika virus culture ATCC:VR-84 isolate MR776, complete genome 13317 13317 100% 0.0 89% KX830960.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 13317 13317 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 13311 13311 99% 0.0 89% HQ234498.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 13311 13311 100% 0.0 89% DQ859059.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 13308 13308 100% 0.0 89% KF268950.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 13306 13306 100% 0.0 89% KF268948.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 13304 13304 100% 0.0 89% KX377335.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 13299 13299 100% 0.0 89% KF383119.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 13295 13295 100% 0.0 89% LC002520.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 13290 13290 100% 0.0 89% KU955595.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 13281 13281 100% 0.0 89% KU955592.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 13279 13279 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 13279 13279 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 13279 13279 100% 0.0 89% KU955594.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 13268 13751 100% 0.0 89% KX198134.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 13263 13263 100% 0.0 89% KU955591.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 13257 13257 100% 0.0 89% KF383116.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 13236 13236 100% 0.0 89% AY632535.2 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 13232 13232 99% 0.0 89% HQ234501.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 13207 13207 100% 0.0 88% KX601166.1 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 13178 13178 100% 0.0 88% KF383117.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 13171 13273 100% 0.0 88% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 13171 13171 99% 0.0 88% HQ234500.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12972 13040 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12900 12900 97% 0.0 89% KF383121.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 11499 15792 86% 0.0 99% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 10922 18351 100% 0.0 99% KX576684.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 10846 10846 97% 0.0 84% KF383120.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 9997 16070 87% 0.0 99% KX447519.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 9836 14948 81% 0.0 99% KX447521.1 Select seq gb|KX830961.1| Synthetic construct, complete sequence 9387 13324 100% 0.0 89% KX830961.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 5020 14384 87% 0.0 95% KU940227.1 Select seq gb|KX212103.1| Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds 5003 5003 27% 0.0 99% KX212103.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 4973 4973 26% 0.0 99% KU758869.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 4964 4964 27% 0.0 99% KU758875.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 4962 4962 27% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 4955 4955 27% 0.0 99% KU758870.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 4953 4953 27% 0.0 99% KU758873.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 4953 4953 27% 0.0 99% KU312314.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 4942 4942 26% 0.0 99% KU758868.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 4940 4940 27% 0.0 99% KU758872.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 4938 4938 26% 0.0 99% KU758874.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 4929 4929 27% 0.0 99% KU758876.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 4926 4926 27% 0.0 99% KU312313.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 4623 4623 25% 0.0 99% KU646828.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 4614 4614 25% 0.0 99% KU646827.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 4195 13267 75% 0.0 95% KX101060.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 3413 3413 18% 0.0 99% KU312315.1 Select seq gb|KU740199.1| Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds 3202 3202 17% 0.0 99% KU740199.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 3094 13068 74% 0.0 99% KX101066.1 Select seq gb|DQ859064.1| Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds 2870 4211 95% 0.0 71% DQ859064.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX216637.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216634.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2686 2686 14% 0.0 99% KX380262.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2686 2686 14% 0.0 99% KX216632.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2682 2682 14% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2682 2682 14% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2682 2682 14% 0.0 99% KX216636.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2677 2677 14% 0.0 99% KX216633.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2677 2677 14% 0.0 99% KJ634273.1 Select seq gb|KX928077.1| Zika virus isolate HN16 polyprotein gene, partial cds 2673 2673 14% 0.0 99% KX928077.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2673 2673 14% 0.0 99% LC171327.1 Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 2664 2664 14% 0.0 99% KX216639.1 Select seq gb|KX101064.1| Zika virus isolate Bahia11, partial genome 2268 10757 65% 0.0 92% KX101064.1 Select seq gb|KX867786.1| Zika virus isolate D304 polyprotein gene, partial cds 2183 2183 12% 0.0 97% KX867786.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 2057 2057 11% 0.0 99% KU686218.1 Select seq gb|KU179098.1| Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds 2012 2012 11% 0.0 99% KU179098.1 Select seq gb|KU886298.1| Zika virus isolate MN NS5 gene, partial cds 1862 1862 10% 0.0 99% KU886298.1 Select seq gb|KX059014.1| Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059014.1 Select seq gb|KX059013.1| Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059013.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 1831 13855 78% 0.0 99% KX101061.1 Select seq gb|KM078936.1| Zika virus strain CHI1410214 NS5 protein gene, partial cds 1746 1746 9% 0.0 99% KM078936.1 Select seq gb|KM078961.1| Zika virus strain CHI2612114 NS5 protein gene, partial cds 1745 1745 9% 0.0 99% KM078961.1 Select seq gb|KM078930.1| Zika virus strain CHI2283714 NS5 protein gene, partial cds 1743 1743 9% 0.0 99% KM078930.1 Select seq gb|KM078971.1| Zika virus strain CHI2613014 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078971.1 Select seq gb|KM078970.1| Zika virus strain CHI2490414 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078970.1 Select seq gb|KM078933.1| Zika virus strain CHI1058514 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078933.1 Select seq gb|KM078929.1| Zika virus strain CHI1805214 NS5 protein gene, partial cds 1737 1737 9% 0.0 99% KM078929.1 Select seq gb|KX377120.1| Zika virus isolate SP54-2016 nonstructural protein 5 gene, partial cds 1694 1694 9% 0.0 99% KX377120.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1649 1649 9% 0.0 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1649 1649 9% 0.0 99% KX173840.1 Select seq gb|KJ873160.1| Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds 1597 1597 8% 0.0 99% KJ873160.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1517 1517 8% 0.0 99% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1507 1507 8% 0.0 99% KX173844.1 Select seq gb|KJ873161.1| Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds 1415 1415 7% 0.0 99% KJ873161.1 Select seq gb|KM851039.1| Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds 1382 1382 7% 0.0 99% KM851039.1 Select seq gb|KU985087.1| Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds 1348 1348 7% 0.0 99% KU985087.1 Select seq gb|KM851038.1| Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds 1346 1346 7% 0.0 98% KM851038.1 Select seq gb|KU556802.1| Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds 1342 1342 7% 0.0 99% KU556802.1 Select seq gb|KU724096.1| Zika virus isolate 259249_2015_Panama NS5B gene, partial cds 1301 1301 7% 0.0 99% KU724096.1 Select seq gb|AF013415.1| Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds 1301 1301 10% 0.0 88% AF013415.1 Select seq gb|KU232300.1| Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds 1234 1234 6% 0.0 99% KU232300.1 Select seq gb|KT200609.1| Zika virus isolate BR/949/15 NS5 gene, partial cds 1231 1231 6% 0.0 99% KT200609.1 Select seq gb|KU232290.1| Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds 1225 1225 6% 0.0 99% KU232290.1 Select seq gb|KU232297.1| Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds 1223 1223 6% 0.0 99% KU232297.1 Select seq gb|KU232294.1| Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds 1216 1216 6% 0.0 99% KU232294.1 Select seq gb|KU232292.1| Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds 1213 1213 6% 0.0 99% KU232292.1 Select seq gb|KU232298.1| Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds 1209 1209 6% 0.0 99% KU232298.1 Select seq gb|KU232293.1| Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds 1207 1207 6% 0.0 99% KU232293.1 Select seq gb|KU232296.1| Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds 1205 1205 6% 0.0 99% KU232296.1 Select seq gb|KU232295.1| Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds 1202 1202 6% 0.0 99% KU232295.1 Select seq gb|KU232288.1| Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds 1191 1191 6% 0.0 99% KU232288.1 Select seq gb|KU232289.1| Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds 1187 1187 6% 0.0 99% KU232289.1 Select seq gb|KU232299.1| Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds 1184 1184 6% 0.0 99% KU232299.1 Select seq gb|KX101063.1| Zika virus isolate Bahia05, partial genome 1180 7407 42% 0.0 99% KX101063.1 Select seq gb|KU232291.1| Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds 1180 1180 6% 0.0 99% KU232291.1 Select seq gb|KU724097.1| Zika virus isolate 259250_2015_Panama NS5B gene, partial cds 1178 1178 6% 0.0 100% KU724097.1 Select seq gb|KX101065.1| Zika virus isolate Bahia15, partial genome 1171 7766 46% 0.0 99% KX101065.1 Select seq gb|KU724098.1| Zika virus isolate 259060_2015_Panama NS5B gene, partial cds 1166 1166 6% 0.0 99% KU724098.1 Select seq gb|KU758878.1| Zika virus polyprotein gene, partial cds 1133 1133 6% 0.0 99% KU758878.1 Select seq gb|KU724099.1| Zika virus isolate 259032_2015_Panama NS5B gene, partial cds 1101 1101 5% 0.0 99% KU724099.1 Select seq gb|KF270886.1| Zika virus strain CCB-870 envelope glycoprotein gene, partial cds 1086 1086 8% 0.0 89% KF270886.1 Select seq gb|KX101062.1| Zika virus isolate Bahia04, partial genome 1045 7321 41% 0.0 97% KX101062.1 Select seq gb|AF372422.1|AF372422 Zika virus envelope protein (E) gene, partial cds 1020 1020 8% 0.0 87% AF372422.1 Select seq gb|KU867812.1| Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds 1018 1018 5% 0.0 100% KU867812.1

DOM_2016_BB-0269_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 4841 15797 90% 0.0 97% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 4841 15799 90% 0.0 97% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 4832 15790 90% 0.0 97% KX842449.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 4828 15775 90% 0.0 97% KX922707.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 4828 15775 90% 0.0 97% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 4828 15772 90% 0.0 97% KX922704.1 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 4828 15781 90% 0.0 97% KX832731.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 4825 15765 90% 0.0 97% KX838904.2 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 4823 15777 90% 0.0 97% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 4823 15775 90% 0.0 97% KX838905.2 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 4823 15765 90% 0.0 97% KX673530.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 4819 15700 90% 0.0 97% KU991811.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 4814 15687 90% 0.0 97% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 4814 15700 90% 0.0 97% KU509998.3 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 4814 15673 90% 0.0 97% KU647676.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 4810 15757 90% 0.0 97% KX838906.2 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 4810 15709 90% 0.0 97% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 4810 15696 90% 0.0 97% KX197205.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 4810 15664 90% 0.0 97% KX694534.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 4810 15723 90% 0.0 97% KX280026.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 4810 15664 90% 0.0 97% KX247646.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 4810 15687 90% 0.0 97% KU926310.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 4810 15687 90% 0.0 97% KU321639.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 4805 15739 90% 0.0 97% KX922708.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 4805 15745 90% 0.0 97% KX922705.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 4805 15644 90% 0.0 97% KX893855.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 4805 15636 90% 0.0 97% KX856011.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 4805 15694 90% 0.0 97% KJ776791.2 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 4805 15655 90% 0.0 97% KU820897.5 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 4805 15640 90% 0.0 97% KX702400.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 4805 15698 90% 0.0 97% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 4805 15692 90% 0.0 97% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 4805 15703 90% 0.0 97% KX447510.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 4805 15678 90% 0.0 97% KX548902.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 4805 15703 90% 0.0 97% KX369547.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 4805 15658 90% 0.0 97% KU758877.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 4805 15669 90% 0.0 97% KX262887.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 4805 15671 90% 0.0 97% KX198135.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 4805 15673 90% 0.0 97% KX197192.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 4805 15664 90% 0.0 97% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 4805 15655 90% 0.0 97% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 4805 15662 90% 0.0 97% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 4805 15655 90% 0.0 97% KX087102.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 4805 15658 90% 0.0 97% KU312312.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 4801 15618 90% 0.0 97% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 4801 15664 90% 0.0 97% KX447517.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 4801 15696 90% 0.0 97% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 4801 15683 90% 0.0 97% KX447514.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 4801 15696 90% 0.0 97% KX447509.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 4801 15638 90% 0.0 97% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 4801 15642 90% 0.0 97% KU870645.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 4801 15671 90% 0.0 97% KU926309.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 4801 15655 90% 0.0 97% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 4801 15655 90% 0.0 97% KU922923.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 4801 15682 90% 0.0 97% KU527068.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 4800 15698 90% 0.0 97% KU729217.2 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 4796 15682 90% 0.0 97% KX879604.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 4796 15687 90% 0.0 97% KX447516.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 4796 15636 90% 0.0 97% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 4796 15667 90% 0.0 97% KX520666.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 4796 15640 90% 0.0 97% KX446951.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 4796 15646 90% 0.0 97% KX247632.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 4796 15636 90% 0.0 97% KX087101.2 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 4796 15647 90% 0.0 97% KU937936.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 4796 15676 90% 0.0 97% KU940228.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 4796 15650 89% 0.0 97% KU940224.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 4796 15665 90% 0.0 97% KU497555.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 4796 15658 90% 0.0 97% KU501217.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 4796 15642 90% 0.0 97% KU501215.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 4796 15647 90% 0.0 97% KU365778.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 4792 15692 90% 0.0 97% KX447513.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 4792 15633 90% 0.0 97% KX377337.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 4792 15633 90% 0.0 97% KU820898.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 4792 15680 90% 0.0 97% KU707826.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 4792 15655 90% 0.0 97% KU501216.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 4792 15671 90% 0.0 97% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 4792 15680 90% 0.0 97% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 4787 15671 90% 0.0 97% KX879603.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 4787 15655 90% 0.0 97% KX806557.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 4787 15620 90% 0.0 97% KX766028.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 4787 15676 90% 0.0 97% KU729218.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 4787 15665 90% 0.0 97% KU365777.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 4783 15627 90% 0.0 97% KX056898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 4783 15624 90% 0.0 97% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 4783 15624 90% 0.0 97% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 4778 15627 90% 0.0 97% KX117076.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 4778 15626 90% 0.0 97% KU955590.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 4774 15618 90% 0.0 96% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 4774 15618 90% 0.0 96% KU963796.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 4769 15609 90% 0.0 96% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 4769 15613 90% 0.0 96% KU866423.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 4769 15613 90% 0.0 96% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 4769 15613 90% 0.0 96% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 4769 15613 90% 0.0 96% KU820899.2 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 4747 15445 90% 0.0 96% KX813683.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 4738 15471 90% 0.0 96% KU744693.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 3748 13387 76% 0.0 97% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 3510 15722 90% 0.0 99% KX576684.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 3507 13633 78% 0.0 99% KX447518.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 3492 12390 71% 0.0 99% KX447521.1

DOM_2016_BB-0216_SER match Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 5434 16687 93% 0.0 99% KX842449.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 5434 16678 93% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 5434 16672 93% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 5433 16670 93% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 5431 16678 93% 0.0 99% KX922703.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 5427 16663 93% 0.0 99% KX838904.2 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 5425 16674 93% 0.0 99% KX922704.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 5425 16687 93% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 5424 16685 93% 0.0 99% KU853012.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 5416 16663 93% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 5416 16660 93% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 5413 16661 93% 0.0 99% KX838906.2 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 5407 16645 93% 0.0 98% KX922708.1 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 5405 16649 93% 0.0 98% KX922705.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 5404 14660 82% 0.0 98% KX447518.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 5404 16609 93% 0.0 98% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 5404 16607 93% 0.0 98% KX280026.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 5398 16587 93% 0.0 98% KX879604.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 5398 16589 93% 0.0 98% KX811222.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 5398 16607 93% 0.0 98% KX447512.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 5398 16609 93% 0.0 98% KU509998.3 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 5398 16575 93% 0.0 98% KU926310.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 5398 16584 93% 0.0 98% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 5398 16578 93% 0.0 98% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 5398 16578 93% 0.0 98% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 5398 16596 93% 0.0 98% KU321639.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 5395 16580 93% 0.0 98% KX879603.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 5395 16593 93% 0.0 98% KX197205.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 5395 16604 93% 0.0 98% KJ776791.2 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 5395 16587 93% 0.0 98% KX447515.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 5395 16604 93% 0.0 98% KX369547.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 5395 16569 93% 0.0 98% KU940228.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 5395 16593 93% 0.0 98% KU729217.2 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 5389 16539 93% 0.0 98% KX806557.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 5389 13607 76% 0.0 98% KX447521.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 5389 16587 93% 0.0 98% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 5389 16593 93% 0.0 98% KX447513.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 5389 16596 93% 0.0 98% KX447509.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 5389 16582 93% 0.0 98% KX197192.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 5389 16474 93% 0.0 98% KU940224.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 5389 16566 93% 0.0 98% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 5389 16560 93% 0.0 98% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 5386 16560 93% 0.0 98% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 5386 16580 93% 0.0 98% KX447516.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 5386 16569 93% 0.0 98% KX198135.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 5380 16587 93% 0.0 98% KX447511.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 5380 16551 93% 0.0 98% KX520666.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 5380 16591 93% 0.0 98% KX051563.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 5380 16569 93% 0.0 98% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 5380 16566 93% 0.0 98% KU501216.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 5377 16535 93% 0.0 98% KX601168.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 5377 16575 93% 0.0 98% KX262887.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 5377 16535 93% 0.0 98% KX087101.2 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 5377 16602 93% 0.0 98% KU991811.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 5377 16526 93% 0.0 98% KU955590.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 5377 16575 93% 0.0 98% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 5377 16557 93% 0.0 98% KU497555.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 5377 16541 93% 0.0 98% KU501215.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 5377 16557 93% 0.0 98% KU312312.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 5371 16530 93% 0.0 98% KX377337.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 5371 16555 93% 0.0 98% KU758877.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 5371 16557 93% 0.0 98% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 5371 16546 93% 0.0 98% KX156775.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 5371 16515 93% 0.0 98% KX117076.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 5371 16524 93% 0.0 98% KX056898.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 5371 16535 93% 0.0 98% KU870645.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 5371 16587 93% 0.0 98% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 5371 16560 93% 0.0 98% KU647676.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 5371 16546 93% 0.0 98% KU365778.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 5368 16548 93% 0.0 98% KU820897.5 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 5368 16571 93% 0.0 98% KX694534.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 5368 14254 80% 0.0 98% KX447520.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 5368 16503 93% 0.0 98% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 5368 16559 93% 0.0 98% KX247646.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 5368 16506 93% 0.0 98% KX185891.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 5368 16553 93% 0.0 98% KX156774.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 5368 16548 93% 0.0 98% KX087102.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 5368 16506 93% 0.0 98% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 5368 16503 93% 0.0 98% KU955589.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 5368 16542 93% 0.0 98% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 5368 16539 93% 0.0 98% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 5368 16503 93% 0.0 98% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 5364 16499 93% 0.0 98% KX266255.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 5362 16533 93% 0.0 98% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 5362 16530 93% 0.0 98% KX702400.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 5362 16497 93% 0.0 98% KU866423.2 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 5362 16551 93% 0.0 98% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 5362 16548 93% 0.0 98% KU937936.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 5362 16524 93% 0.0 98% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 5362 16521 93% 0.0 98% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 5362 16521 93% 0.0 98% KU761564.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 5359 16544 93% 0.0 98% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 5359 16535 93% 0.0 98% KX446950.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 5353 16521 93% 0.0 98% KX766029.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 5353 16521 93% 0.0 98% KX766028.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 5353 16546 93% 0.0 98% KX548902.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 5350 16539 93% 0.0 98% KX856011.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 5335 16389 93% 0.0 98% KU744693.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 5290 16339 93% 0.0 98% KX813683.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 5286 16349 93% 0.0 98% KX827309.1

DOM_2016_BB-0208_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18465 18465 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18465 18465 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX842449.2 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18453 18453 100% 0.0 99% KX673530.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18446 18446 100% 0.0 99% KX922706.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922707.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922704.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18428 18428 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18420 18420 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18372 18372 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18366 18366 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18366 18366 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18363 18363 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447513.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18357 18357 100% 0.0 99% KX051563.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18354 18354 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18354 18354 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447511.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18354 18354 100% 0.0 99% KU527068.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18354 18354 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18348 18348 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447514.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18345 18345 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18339 18339 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18339 18339 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18339 18339 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18339 18339 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18336 18336 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18330 18330 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18330 18330 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18321 18321 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18321 18321 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18318 18318 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18318 18318 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18312 18312 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18309 18309 100% 0.0 99% KU922960.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18303 18303 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18303 18303 100% 0.0 99% KX806557.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18303 18303 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18303 18303 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18303 18303 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18300 18300 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18300 18300 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18298 18298 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18294 18294 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18294 18294 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18285 18285 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18278 18278 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18273 18273 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18258 18258 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18258 18258 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18254 18254 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18240 18240 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18119 18119 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18029 18029 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17915 17915 100% 0.0 99% KX694532.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17732 17732 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17730 17730 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17685 17685 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17576 17576 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17429 17429 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16401 16401 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16393 16393 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16392 16392 100% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16388 16388 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16220 16220 88% 0.0 99% KX447518.1 Select seq gb|KX830960.1| Zika virus culture ATCC:VR-84 isolate MR776, complete genome 13322 13322 100% 0.0 89% KX830960.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 13322 13322 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 13317 13317 99% 0.0 89% HQ234498.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 13315 13315 100% 0.0 89% DQ859059.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 13308 13308 100% 0.0 89% KX377335.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 13306 13306 100% 0.0 89% KF383115.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 13304 13304 100% 0.0 89% KF383119.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 13299 13299 100% 0.0 89% LC002520.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 13293 13293 100% 0.0 89% KF268949.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 13293 13293 100% 0.0 89% KF268948.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 13286 13286 100% 0.0 89% KF268950.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 13283 13283 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 13283 13283 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 13283 13283 100% 0.0 89% KU955594.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 13281 13281 100% 0.0 89% KU955595.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 13272 13272 100% 0.0 89% KU955592.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 13259 13742 100% 0.0 89% KX198134.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 13254 13254 100% 0.0 89% KU955591.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 13248 13248 100% 0.0 89% KF383116.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 13241 13241 100% 0.0 89% AY632535.2 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 13223 13223 99% 0.0 89% HQ234501.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 13198 13198 100% 0.0 88% KX601166.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 13176 13278 100% 0.0 88% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 13174 13174 99% 0.0 88% HQ234500.1 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 13169 13169 100% 0.0 88% KF383117.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12981 13049 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12909 12909 97% 0.0 89% KF383121.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 11517 15828 86% 0.0 99% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 10926 18371 100% 0.0 99% KX576684.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 10846 10846 97% 0.0 84% KF383120.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 10006 16097 87% 0.0 99% KX447519.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 9858 14979 81% 0.0 99% KX447521.1 Select seq gb|KX830961.1| Synthetic construct, complete sequence 9393 13329 100% 0.0 89% KX830961.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 5034 14400 87% 0.0 95% KU940227.1 Select seq gb|KX212103.1| Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds 5012 5012 27% 0.0 99% KX212103.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 4985 4985 26% 0.0 99% KU758869.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 4978 4978 27% 0.0 99% KU758875.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 4974 4974 27% 0.0 99% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 4967 4967 27% 0.0 99% KU758870.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 4967 4967 27% 0.0 99% KU312314.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 4965 4965 27% 0.0 99% KU758873.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 4956 4956 26% 0.0 99% KU758868.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 4953 4953 27% 0.0 99% KU758872.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 4951 4951 26% 0.0 99% KU758874.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 4942 4942 27% 0.0 99% KU758876.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 4940 4940 27% 0.0 99% KU312313.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 4641 4641 25% 0.0 99% KU646828.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 4632 4632 25% 0.0 99% KU646827.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 4208 13276 75% 0.0 95% KX101060.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 3425 3425 18% 0.0 99% KU312315.1 Select seq gb|KU740199.1| Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds 3214 3214 17% 0.0 99% KU740199.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 3112 13074 74% 0.0 99% KX101066.1 Select seq gb|DQ859064.1| Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds 2874 4206 95% 0.0 71% DQ859064.1 Select seq gb|KX216638.1| Zika virus isolate ESS23-2015 envelope protein gene, partial cds 2704 2704 14% 0.0 99% KX216638.1 Select seq gb|KX216637.1| Zika virus isolate GS29-2016 envelope protein gene, partial cds 2704 2704 14% 0.0 99% KX216637.1 Select seq gb|KX216635.1| Zika virus isolate TS17-2016 envelope protein gene, partial cds 2700 2700 14% 0.0 99% KX216635.1 Select seq gb|KX216634.1| Zika virus isolate TS14-2016 envelope protein gene, partial cds 2700 2700 14% 0.0 99% KX216634.1 Select seq gb|KX380262.1| Zika virus isolate MS10-2016 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX380262.1 Select seq gb|KX216632.1| Zika virus isolate SIS58-2015 envelope protein gene, partial cds 2695 2695 14% 0.0 99% KX216632.1 Select seq gb|KX380263.1| Zika virus isolate FS92-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX380263.1 Select seq gb|KX216640.1| Zika virus isolate CKS63-2014 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216640.1 Select seq gb|KX216636.1| Zika virus isolate SS27-2016 envelope protein gene, partial cds 2691 2691 14% 0.0 99% KX216636.1 Select seq gb|KX216633.1| Zika virus isolate VS51-2016 envelope protein gene, partial cds 2686 2686 14% 0.0 99% KX216633.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2686 2686 14% 0.0 99% KJ634273.1 Select seq gb|KX928077.1| Zika virus isolate HN16 polyprotein gene, partial cds 2682 2682 14% 0.0 99% KX928077.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2682 2682 14% 0.0 99% LC171327.1 Select seq gb|KX216639.1| Zika virus isolate SS57-2016 envelope protein gene, partial cds 2673 2673 14% 0.0 99% KX216639.1 Select seq gb|KX101064.1| Zika virus isolate Bahia11, partial genome 2268 10757 65% 0.0 92% KX101064.1 Select seq gb|KX867786.1| Zika virus isolate D304 polyprotein gene, partial cds 2192 2192 12% 0.0 97% KX867786.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 2051 2051 11% 0.0 99% KU686218.1 Select seq gb|KU179098.1| Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds 2017 2017 11% 0.0 99% KU179098.1 Select seq gb|KU886298.1| Zika virus isolate MN NS5 gene, partial cds 1862 1862 10% 0.0 99% KU886298.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 1840 13887 78% 0.0 99% KX101061.1 Select seq gb|KX059014.1| Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059014.1 Select seq gb|KX059013.1| Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds 1833 1833 9% 0.0 99% KX059013.1 Select seq gb|KM078936.1| Zika virus strain CHI1410214 NS5 protein gene, partial cds 1746 1746 9% 0.0 99% KM078936.1 Select seq gb|KM078961.1| Zika virus strain CHI2612114 NS5 protein gene, partial cds 1745 1745 9% 0.0 99% KM078961.1 Select seq gb|KM078930.1| Zika virus strain CHI2283714 NS5 protein gene, partial cds 1743 1743 9% 0.0 99% KM078930.1 Select seq gb|KM078971.1| Zika virus strain CHI2613014 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078971.1 Select seq gb|KM078970.1| Zika virus strain CHI2490414 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078970.1 Select seq gb|KM078933.1| Zika virus strain CHI1058514 NS5 protein gene, partial cds 1739 1739 9% 0.0 99% KM078933.1 Select seq gb|KM078929.1| Zika virus strain CHI1805214 NS5 protein gene, partial cds 1737 1737 9% 0.0 99% KM078929.1 Select seq gb|KX377120.1| Zika virus isolate SP54-2016 nonstructural protein 5 gene, partial cds 1694 1694 9% 0.0 99% KX377120.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1658 1658 9% 0.0 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1658 1658 9% 0.0 99% KX173840.1 Select seq gb|KJ873160.1| Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds 1597 1597 8% 0.0 99% KJ873160.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1526 1526 8% 0.0 99% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1516 1516 8% 0.0 99% KX173844.1 Select seq gb|KJ873161.1| Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds 1415 1415 7% 0.0 99% KJ873161.1 Select seq gb|KM851039.1| Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds 1382 1382 7% 0.0 99% KM851039.1 Select seq gb|KU985087.1| Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds 1348 1348 7% 0.0 99% KU985087.1 Select seq gb|KM851038.1| Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds 1346 1346 7% 0.0 98% KM851038.1 Select seq gb|KU556802.1| Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds 1342 1342 7% 0.0 99% KU556802.1 Select seq gb|KU724096.1| Zika virus isolate 259249_2015_Panama NS5B gene, partial cds 1301 1301 7% 0.0 99% KU724096.1 Select seq gb|AF013415.1| Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds 1301 1301 10% 0.0 88% AF013415.1 Select seq gb|KT200609.1| Zika virus isolate BR/949/15 NS5 gene, partial cds 1245 1245 6% 0.0 99% KT200609.1 Select seq gb|KU232300.1| Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds 1234 1234 6% 0.0 99% KU232300.1 Select seq gb|KU232290.1| Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds 1225 1225 6% 0.0 99% KU232290.1 Select seq gb|KU232297.1| Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds 1223 1223 6% 0.0 99% KU232297.1 Select seq gb|KU232294.1| Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds 1216 1216 6% 0.0 99% KU232294.1 Select seq gb|KU232292.1| Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds 1213 1213 6% 0.0 99% KU232292.1 Select seq gb|KU232298.1| Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds 1209 1209 6% 0.0 99% KU232298.1 Select seq gb|KU232293.1| Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds 1207 1207 6% 0.0 99% KU232293.1 Select seq gb|KU232296.1| Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds 1205 1205 6% 0.0 99% KU232296.1 Select seq gb|KU232295.1| Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds 1202 1202 6% 0.0 99% KU232295.1 Select seq gb|KU232288.1| Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds 1191 1191 6% 0.0 99% KU232288.1 Select seq gb|KU232289.1| Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds 1187 1187 6% 0.0 99% KU232289.1 Select seq gb|KX101063.1| Zika virus isolate Bahia05, partial genome 1186 7409 42% 0.0 99% KX101063.1 Select seq gb|KU232299.1| Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds 1184 1184 6% 0.0 99% KU232299.1 Select seq gb|KU232291.1| Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds 1180 1180 6% 0.0 99% KU232291.1 Select seq gb|KU724097.1| Zika virus isolate 259250_2015_Panama NS5B gene, partial cds 1178 1178 6% 0.0 100% KU724097.1 Select seq gb|KX101065.1| Zika virus isolate Bahia15, partial genome 1171 7762 46% 0.0 99% KX101065.1 Select seq gb|KU724098.1| Zika virus isolate 259060_2015_Panama NS5B gene, partial cds 1166 1166 6% 0.0 99% KU724098.1 Select seq gb|KU758878.1| Zika virus polyprotein gene, partial cds 1133 1133 6% 0.0 99% KU758878.1 Select seq gb|KU724099.1| Zika virus isolate 259032_2015_Panama NS5B gene, partial cds 1101 1101 5% 0.0 99% KU724099.1 Select seq gb|KF270886.1| Zika virus strain CCB-870 envelope glycoprotein gene, partial cds 1081 1081 8% 0.0 89% KF270886.1 Select seq gb|KX101062.1| Zika virus isolate Bahia04, partial genome 1054 7321 41% 0.0 97% KX101062.1 Select seq gb|AF372422.1|AF372422 Zika virus envelope protein (E) gene, partial cds 1023 1023 8% 0.0 87% AF372422.1 Select seq gb|KU867812.1| Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds 1012 1012 5% 0.0 99% KU867812.1

October 11, 2016 Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla. — In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a Zika case count by county and information to keep Floridians informed and prepared. In order to keep the public informed, the department has posted our investigation process here. There are eight new travel related cases today with four in Broward, two in Pinellas, one in St. Lucie and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There is one new non-travel related case linked to Miami-Dade County. The department is to investigating where exposure occurred. DOH continues door-to-door outreach and targeted testing in Palm Beach and Miami-Dade counties and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH believes ongoing transmission is only taking place within the identified area in Miami Beach in Miami-Dade County, see map below. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. For a complete breakdown of non-travel and travel-related Zika infections to-date, please see below. Infection Type Infection Count Travel-Related Infections of Zika 728 Non-Travel Related Infections of Zika 147 Infections Involving Pregnant Women 104 Out of State Cases (not Florida Residents) 19 Undetermined 4 Total 1,002 The department is currently conducting 16 active investigations. The department has closed 26 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 8,928 people statewide. Florida currently has the capacity to test 5,957 people for active Zika virus and 7,130 for Zika antibodies. At Governor Scott’s direction, all county health departments now offer free Zika risk assessment and testing to pregnant women. Florida’s small case cluster is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted area in Miami-Dade County (see map below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 104. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 6,779 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. Miami Beach Map click image above to enlarge About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health please visit www.FloridaHealth.gov.

October 11, 2016 Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla. — In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a Zika case count by county and information to keep Floridians informed and prepared. In order to keep the public informed, the department has posted our investigation process here. There are eight new travel related cases today with four in Broward, two in Pinellas, one in St. Lucie and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There is one new non-travel related case linked to Miami-Dade County. The department is to investigating where exposure occurred. DOH continues door-to-door outreach and targeted testing in Palm Beach and Miami-Dade counties and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH believes ongoing transmission is only taking place within the identified area in Miami Beach in Miami-Dade County, see map below. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. For a complete breakdown of non-travel and travel-related Zika infections to-date, please see below. Infection Type Infection Count Travel-Related Infections of Zika 728 Non-Travel Related Infections of Zika 147 Infections Involving Pregnant Women 104 Out of State Cases (not Florida Residents) 19 Undetermined 4 Total 1,002 The department is currently conducting 16 active investigations. The department has closed 26 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 8,928 people statewide. Florida currently has the capacity to test 5,957 people for active Zika virus and 7,130 for Zika antibodies. At Governor Scott’s direction, all county health departments now offer free Zika risk assessment and testing to pregnant women. Florida’s small case cluster is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted area in Miami-Dade County (see map below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 104. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 6,779 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. Miami Beach Map click image above to enlarge About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health please visit www.FloridaHealth.gov.

There are eight new travel related cases today with four in Broward, two in Pinellas, one in St. Lucie and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There is one new non-travel related case linked to Miami-Dade County. The department is to investigating where exposure occurred.

There is one new non-travel related case linked to Miami-Dade County. The department is to investigating where exposure occurred.

Infection Type Infection Count Travel-Related Infections of Zika 728 Non-Travel Related Infections of Zika 147 Infections Involving Pregnant Women 104 Out of State Cases (not Florida Residents) 19 Undetermined 4 Total 1,002 http://www.floridahealth.gov/newsroom/2016/10/101116-zika-update.html

Infection Type Infection Count Travel-Related Infections of Zika 728 Non-Travel Related Infections of Zika 147 Infections Involving Pregnant Women 104 Out of State Cases (not Florida Residents) 19 Undetermined 4 Total 1,002 http://www.floridahealth.gov/newsroom/2016/10/101116-zika-update.html

DOM_2016_BB-0127_SER matches Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18474 18474 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18465 18465 100% 0.0 99% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18462 18462 100% 0.0 99% KX156774.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18462 18462 100% 0.0 99% KU647676.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18456 18456 100% 0.0 99% KU820897.5 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18456 18456 100% 0.0 99% KX247646.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18456 18456 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18456 18456 100% 0.0 99% KX087102.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18444 18444 100% 0.0 99% KU922960.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18438 18438 100% 0.0 99% KU922923.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18433 18433 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18429 18429 100% 0.0 99% KX702400.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX548902.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX447510.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU991811.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18402 18402 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18402 18402 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18402 18402 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18399 18399 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX447513.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18390 18390 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX447511.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18390 18390 100% 0.0 99% KX280026.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18390 18390 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18384 18384 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18384 18384 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18381 18381 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18375 18375 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18375 18375 100% 0.0 99% KX197192.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18372 18372 100% 0.0 99% KX811222.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18372 18372 99% 0.0 99% KU497555.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18366 18366 100% 0.0 99% KX879604.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18366 18366 100% 0.0 99% KX694534.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU758877.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18366 18366 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18363 18363 100% 0.0 99% KU940228.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365777.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18357 18357 100% 0.0 99% KX879603.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU501217.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU312312.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18354 18354 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU501216.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447517.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU937936.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18348 18348 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18345 18345 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18345 18345 100% 0.0 99% KX087101.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18339 18339 100% 0.0 99% KX856011.1 Select seq gb|KX806557.1| Zika virus isolate TS17-2016, complete genome 18339 18339 100% 0.0 99% KX806557.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18339 18339 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18339 18339 100% 0.0 99% KX377337.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU820898.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18336 18336 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18336 18336 100% 0.0 99% KU870645.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18330 18330 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18330 18330 100% 0.0 99% KU853012.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18323 18323 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU761564.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX842449.2 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18312 18312 100% 0.0 99% KX766029.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX922707.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18309 18309 100% 0.0 99% KX673530.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18309 18309 100% 0.0 99% KX117076.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18305 18305 100% 0.0 99% KX922706.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX922703.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX838906.2 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX832731.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX922704.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU963796.1 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX838904.2 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18294 18294 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18294 18294 100% 0.0 99% KU820899.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18292 18292 100% 0.0 99% KX922705.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18291 18291 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18291 18291 100% 0.0 99% KU866423.2 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX922708.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18273 18273 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18155 18155 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18141 18141 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18128 18128 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18065 18065 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17957 17957 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17757 17757 99% 0.0 98% JN860885.1

week conf discard untested total weekly increase 39 42 204 315 561 23 38 42 200 296 538 55 37 41 196 246 483 32 36 40 195 216 451 12 35 40 190 209 439 13 34 38 168 220 426 25 33 34 158 209 401 16 32 29 102 254 385 18 31 24 101 242 367 23 30 22 97 225 344 24 29 21 92 207 320 23 28 21 80 196 297 41 27 21 75 160 256 62 26 18 64 112 194 13 25 13 56 112 181 17 24 11 51 102 164 27 23 6 50 81 137 19 22 6 43 69 118 23 21 6 41 48 95 7 20 5 26 57 88 7 19 5 26 50 81 9 18 5 24 43 72 14 17 5 21 32 58 8 16 4 20 26 50 6 15 4 18 22 44 11

intensified surveillance of microcephaly and other birth defects CNS Review October 7, 2016 Among the epidemiological weeks 01 to 39 of 2016 have been confirmed forty-two (42) cases of microcephaly associated Zika virus, 204 cases were dismissed and 315 cases are in study. http://www.ins.gov.co/boletin-epidemiologico/Boletn Epidemiolgico/2016 Boletin epidemiologico semana 39.pdf

Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

County Cases Angelina 1 Bell 6 Bexar 16 Brazoria 1 Brazos 3 Burnet 1 Cameron 3 Collin 5 Dallas 38 Denton 9 El Paso 3 Ellis 1 Fort Bend 7 Frio 1 Galveston 7 Gray 1 Grayson 1 Gregg 1 Hamilton 1 Harris 61 Jackson 1 Jefferson 2 Jones 1 Lee 1 Lubbock 1 Matagorda 1 Medina 1 Midland 1 Montgomery 1 Palo Pinto 1 Parker 1 Randall 1 Rusk 1 Tarrant 23 Travis 10 Upshur 1 Val Verde 1 Walker 1 Williamson 5 Webb 3 Wise 1 Total 226 Dallas Pregnant Registry 18 Texas Preg Reg excl Dallas 46 Total 290

ACTIVE INVESTIGATIONS Information on Active Investigations When a local case of Zika virus is confirmed through laboratory testing, the department conducts a thorough investigation around the case to determine if additional people are infected. The department interviews and tests close contacts and community members around the case. Knowing if additional people are infected helps the department determine if there is a zone where mosquitoes are transmitting the virus. Not every case results in a designation of active transmission in an area. In some instances, a case of Zika is an isolated incident with no additional people infected. For more information on the department’s testing and investigation process, click here. paragraph break Current Number of Active Investigations: 14 Miami-Dade County: 10 open investigations Palm Beach: 2 open investigations Unknown: 2 open investigations *Note: Exposure occurred in Miami Beach and overseas in an area with widespread transmission of Zika. paragraph break Current Number of Closed Investigations: 26 Miami-Dade County: 20 closed investigations Palm Beach County: 4 closed investigation Broward County: 1 closed investigation Pinellas: 1 closed investigation paragraph break Sampling Activities For Active Investigations Miami Beach in Miami-Dade County Total # of Samples Collected Positive Negative Pending Results 1,054 62 992 0 paragraph break Palm Beach County – 2 Investigations Total # of Samples Collected Positive Negative Pending Results 3 0 3 0 paragraph break Miami-Dade Investigations Outside of Wynwood and Miami Beach – 9 Investigations Total # of Samples Collected Positive Negative Pending Results 26 1 0 25 paragraph break Wynwood Area in Miami-Dade County – Note: This investigation is closed, but the department is providing the sampling results below for reference. Total # of Samples Collected Positive Negative Pending Results 525 33 491 0 Data as of Oct. 10, 2016 - 3:35 PM ET http://www.floridahealth.gov/diseases-and-conditions/zika-virus/index.html?utm_source=flhealthIndex