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Aug. 16, 2016 DEPARTMENT OF HEALTH DAILY ZIKA UPDATE http://www.floridahealth.gov/newsroom/2016/08/081616-zika-update.html Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will continue to issue a Zika virus update each week day. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. The department has conducted testing for the Zika virus for more than 3,478 people statewide. Florida currently has the capacity to test 5,293 people for active Zika virus and 2,951 for Zika antibodies. Per the Governor’s direction on August 3, all county health departments are now offering free Zika risk assessment and testing to any pregnant woman who would like to be tested. There are 12 new travel-related cases today with five in Miami-Dade, four in Broward, one in Hillsborough, one in Orange, one in St. Lucie and one involving a pregnant woman. Please visit our website to see the full list of travel-related cases. There are no new non-travel related cases today. The department still believes active transmissions are still only occurring in the area that is less than one square mile in Miami-Dade County. For a complete breakdown of non-travel and travel-related Zika infections to-date, please see below. Infection Type Infection Count Travel-Related Infections of Zika 452 Non-Travel Related Infections of Zika 30 Infections Involving Pregnant Women 60 ACTIVE INVESTIGATIONS The department is currently conducting five active investigations. Under each section below, the department outlines the original cases that spurred these investigations, the number of samples collected and results in connection with each investigation to-date. 1) Identified one-square mile in Miami-Dade – Two (2) original cases Total # of Samples Collected Negative Samples Positive Samples Pending Results 518 492 22 4 Door to door outreach and sampling continue. Mosquito abatement and reduction activities are on-going. On August 4, the department announced we have completed testing in a 10 block area of the northwest quadrant of the one-square mile area and no people within the 10 block radius tested positive. On August 11, the department announced that it completed testing in an additional four block area and no people within that four block area tested positive. A map detailing the area is below. The CDC continues to monitor the area per their guidelines. 2) First Miami-Dade investigation outside the one-square mile: One (1) case Total # of Samples Collected Negative Samples Positive Samples Pending Results 21 19 0 2 3) One (1) case in Palm Beach County: Total # of Samples Collected Negative Samples Positive Samples Pending Results 3 3 0 0 4) Second Miami-Dade investigation outside the one-square mile: One (1) case The investigation is beginning in this area in Miami-Dade County. Mosquito abatement and reduction activities will take place around the area of interest. 5) Third Miami-Dade investigation outside the one-square mile: One (1) case Total # of Samples Collected Negative Samples Positive Samples Pending Results 5 1 0 4 CLOSED INVESTIGATIONS The department has closed out the investigations into the first cases in Miami-Dade and Broward County (two cases). The department tested 124 close contacts and individuals from the community and found no additional positives. The department still believes active transmissions of the Zika virus are occurring in one small area in Miami-Dade County, just north of downtown. The exact location is within the boundaries of the following area: NW 5th Avenue to the west, US 1 to the east, NW/NE 38th Street to the north and NW/NE 20thStreet to the south. This area is about one square mile and a map is below to detail the area. This remains the only area of the state where the department has confirmed there are local transmissions of Zika. If investigations reveal additional areas of likely active transmission, the department will announce a defined area of concern. One case does not mean active transmission is taking place and that’s why the department conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. The department has not yet determined where the individual in Palm Beach County or the three individuals outside the one-square mile in Miami-Dade County likely contracted Zika and will share more details as the investigations progress. If the department finds evidence that active transmission is occurring in an area, we will notify the media and the public. CDC recommends that women who are pregnant or thinking of becoming pregnant postpone travel to areas with widespread Zika infection. Florida’s small case cluster is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted area in Miami-Dade County (see map below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the one square mile area to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms since January. The total number of pregnant women who have been or are being monitored is 60. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 4,103 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov.

Infection Type Infection Count Travel-Related Infections of Zika 452 Non-Travel Related Infections of Zika 30 Infections Involving Pregnant Women 60

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18480 18480 100% 0.0 99% KX369547.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX447513.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18471 18471 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447511.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX447514.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18462 18462 100% 0.0 99% KU509998.3 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX447516.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18444 18444 100% 0.0 99% KX051563.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18438 18438 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18438 18438 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18438 18438 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18429 18429 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU365779.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX447517.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18426 18426 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18426 18426 100% 0.0 99% KX197192.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18417 18417 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18417 18417 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18417 18417 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18411 18411 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18408 18408 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18408 18408 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU501217.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18404 18404 99% 0.0 99% KU497555.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18402 18402 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18402 18402 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18399 18399 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18399 18399 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX520666.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18393 18393 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18390 18390 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18390 18390 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18390 18390 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18390 18390 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18384 18384 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX087101.2 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18384 18384 100% 0.0 99% KX117076.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18384 18384 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18381 18381 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18381 18381 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18379 18379 100% 0.0 99% KU853012.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18372 18372 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU955589.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU820898.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18372 18372 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18368 18368 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU866423.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18357 18357 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18321 18321 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18213 18213 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18132 18132 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17825 17825 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17825 17825 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17793 17793 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17676 17676 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17524 17524 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16491 16491 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16484 16484 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16478 16478 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16310 16310 88% 0.0 99% KX447518.1

LOCUS KX447510 10588 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0049_PF polyprotein gene, complete cds. ACCESSION KX447510 VERSION KX447510.1 GI:1041521212 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10588 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0049_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Dec-2013" /note="Vero cells; one passage; genotype: Asian" CDS 48..10319 /codon_start=1 /product="polyprotein" /protein_id="ANO46302.1" /db_xref="GI:1041521213" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccta 61 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 121 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 181 ggatggtctt ggcgattcta gcctttttga gattcacggc tatcaagcca tcactgggtc 241 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 301 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 361 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 421 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 481 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 541 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 601 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 661 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta 721 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 781 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 841 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 901 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 961 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1021 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1081 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1141 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1201 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1261 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1321 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1381 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1441 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1501 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1561 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1621 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1681 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1741 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1801 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1861 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1921 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 1981 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2041 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2101 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2161 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2221 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2281 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2341 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2401 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2461 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2521 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2581 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2641 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2701 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2761 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2821 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2881 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 2941 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3001 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3061 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3121 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3181 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3241 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3301 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3361 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3421 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3481 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3541 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3601 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3661 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3721 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3781 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3841 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3901 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 3961 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgtgggg 4021 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4081 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4141 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4201 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4261 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4321 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4381 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4441 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4501 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4561 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4621 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4681 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4741 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4801 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4861 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4921 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 4981 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5041 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5101 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5161 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5221 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5281 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5341 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5401 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5461 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5521 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5581 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5641 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5701 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5761 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5821 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5881 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 5941 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6001 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6061 tcatagcttc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6121 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6181 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6241 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6301 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6361 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6421 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6481 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6541 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6601 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6661 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6721 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6781 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6841 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6901 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 6961 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7021 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7081 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7141 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7201 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7261 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7321 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7381 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7441 gggccctgat cacagctgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7501 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7561 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7621 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7681 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7741 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7801 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7861 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7921 aaggaggccc tggtcatgaa gaacccatgt tggtgcaaag ctatgggtgg aacatagtcc 7981 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8041 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8101 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8161 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8221 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8281 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8341 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8401 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8461 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8521 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8581 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8641 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8701 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8761 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8821 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8881 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 8941 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9001 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9061 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9121 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9181 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9241 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9301 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9361 ctgaaaaagg gaagacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9421 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9481 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9541 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9601 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9661 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9721 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9781 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9841 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9901 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 9961 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10021 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10081 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10141 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10201 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10261 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10321 caccaatctt agtgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10381 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10441 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10501 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10561 ggcctgaact ggagatcagc tgtggatc

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18480 18480 100% 0.0 99% KX369547.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX447509.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX447513.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18471 18471 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447511.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX447514.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18462 18462 100% 0.0 99% KU509998.3 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX447516.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18444 18444 100% 0.0 99% KX051563.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18438 18438 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18438 18438 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18438 18438 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18429 18429 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18429 18429 100% 0.0 99% KU365779.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX447517.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18426 18426 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18426 18426 100% 0.0 99% KX197192.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18417 18417 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18417 18417 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18417 18417 100% 0.0 99% KU365780.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18411 18411 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18411 18411 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18408 18408 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18408 18408 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU501217.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18404 18404 99% 0.0 99% KU497555.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18402 18402 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18402 18402 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18402 18402 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18399 18399 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18399 18399 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU312312.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18393 18393 100% 0.0 99% KX520666.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18393 18393 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18390 18390 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18390 18390 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18390 18390 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18390 18390 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18390 18390 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18384 18384 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18384 18384 100% 0.0 99% KX087101.2 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18384 18384 100% 0.0 99% KX117076.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18384 18384 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18381 18381 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18381 18381 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18379 18379 100% 0.0 99% KU853012.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18372 18372 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU955589.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU820898.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18372 18372 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18368 18368 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU866423.2 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18357 18357 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18321 18321 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18213 18213 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18132 18132 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17825 17825 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17825 17825 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17793 17793 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17676 17676 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17524 17524 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16491 16491 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16484 16484 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16478 16478 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16310 16310 88% 0.0 99% KX447518.1

LOCUS KX447510 10588 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0049_PF polyprotein gene, complete cds. ACCESSION KX447510 VERSION KX447510.1 GI:1041521212 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10588) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10588 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0049_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Dec-2013" /note="Vero cells; one passage; genotype: Asian" CDS 48..10319 /codon_start=1 /product="polyprotein" /protein_id="ANO46302.1" /db_xref="GI:1041521213" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccta 61 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 121 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 181 ggatggtctt ggcgattcta gcctttttga gattcacggc tatcaagcca tcactgggtc 241 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 301 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 361 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 421 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 481 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 541 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 601 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 661 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta 721 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 781 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 841 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 901 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 961 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1021 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1081 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1141 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1201 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1261 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1321 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1381 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1441 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1501 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1561 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1621 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1681 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1741 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1801 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1861 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1921 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 1981 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2041 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2101 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2161 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2221 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2281 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2341 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2401 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2461 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2521 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2581 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2641 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2701 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2761 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2821 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2881 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 2941 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3001 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3061 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3121 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3181 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3241 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3301 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3361 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3421 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3481 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3541 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3601 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3661 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3721 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3781 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3841 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3901 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 3961 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgtgggg 4021 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4081 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4141 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4201 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4261 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4321 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4381 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4441 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4501 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4561 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4621 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4681 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4741 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4801 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4861 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4921 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 4981 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5041 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5101 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5161 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5221 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5281 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5341 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5401 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5461 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5521 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5581 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5641 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5701 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5761 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5821 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5881 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 5941 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6001 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6061 tcatagcttc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6121 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6181 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6241 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6301 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6361 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6421 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6481 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6541 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6601 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6661 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6721 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6781 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6841 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6901 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 6961 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7021 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7081 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7141 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7201 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7261 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7321 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7381 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7441 gggccctgat cacagctgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7501 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7561 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7621 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7681 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7741 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7801 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7861 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7921 aaggaggccc tggtcatgaa gaacccatgt tggtgcaaag ctatgggtgg aacatagtcc 7981 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8041 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8101 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8161 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8221 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8281 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8341 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8401 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8461 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8521 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8581 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8641 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8701 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8761 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8821 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8881 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 8941 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9001 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9061 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9121 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9181 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9241 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9301 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9361 ctgaaaaagg gaagacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9421 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9481 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9541 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9601 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9661 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9721 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9781 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9841 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9901 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 9961 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10021 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10081 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10141 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10201 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10261 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10321 caccaatctt agtgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10381 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10441 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10501 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10561 ggcctgaact ggagatcagc tgtggatc

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447516.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18480 18480 100% 0.0 99% KX447509.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18474 18474 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18474 18474 100% 0.0 99% KX369547.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18474 18474 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18471 18471 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18465 18465 100% 0.0 99% KX447513.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18462 18462 100% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18456 18456 100% 0.0 99% KX447510.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX447517.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18429 18429 100% 0.0 99% KU509998.3 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18411 18411 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18411 18411 100% 0.0 99% KX051563.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18408 18408 100% 0.0 99% KU991811.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18408 18408 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18399 18399 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18399 18399 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18393 18393 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18393 18393 100% 0.0 99% KX197192.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18390 18390 100% 0.0 99% KX117076.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18390 18390 100% 0.0 99% KU940228.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18384 18384 100% 0.0 99% KX198135.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18384 18384 100% 0.0 99% KU926309.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18384 18384 100% 0.0 99% KU365780.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU963796.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18381 18381 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU758877.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18375 18375 100% 0.0 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18375 18375 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18375 18375 100% 0.0 99% KX156776.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18375 18375 100% 0.0 99% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU501217.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18372 18372 100% 0.0 99% KX266255.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KX520666.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU866423.2 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18372 18372 100% 0.0 99% KX156774.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU729217.2 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18372 18372 99% 0.0 99% KU497555.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18372 18372 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18372 18372 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18366 18366 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18366 18366 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18363 18363 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18357 18357 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU937936.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18357 18357 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18357 18357 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18357 18357 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18354 18354 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18354 18354 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18354 18354 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18354 18354 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18348 18348 100% 0.0 99% KX377337.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18348 18348 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18348 18348 100% 0.0 99% KU853012.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18327 18327 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18294 18294 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18191 18191 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18137 18137 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17831 17831 100% 0.0 99% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17829 17829 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17766 17766 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17685 17685 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17528 17528 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16496 16496 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16487 16487 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16482 16482 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16280 16280 88% 0.0 99% KX447518.1

Texas Zika case linked to Miami travel Susan Miller, USA TODAY8:01 a.m. EDT August 16, 2016 (Photo: Joe Raedle, Getty Images) The Zika outbreak has experienced a new first: The spread of the virus from state to state. A Texas resident who recently traveled to an area of Miami known as a hot spot for local Zika transmission tested positive for the virus, the Texas Department of State Health Services said Monday. While there's no evidence that Zika is spreading in Texas, the new case shows that states other than Florida are vulnerable. All that's required for the disease to spread in Texas is for mosquitoes to bite the infected person, incubate the virus, then bite others. "This is the first Texas case to be linked to travel within the continental United States. The case will be classified as 'travel-associated' and is being investigated for more details," the department said in a statement.. The El Paso County resident sought testing in Texas after becoming ill. Texas health officials linked the case to Miami after examining dates of travel and the onset of symptoms. It was El Paso County's first Zika case. The Texas health department said the county had no other evidence of the virus or local transmission. The Zika virus is usually spread from human to human by the bite of infected mosquitoes. It can also pass from mother to child, through sex and through blood transfusions. Both Texas and Florida have the mosquitoes that spread Zika, called the Aedes aegypti and Aedes albopictus. And both have experienced clusters of mosquito-borne diseases in recent years, including dengue and chikungunya. Those outbreaks have been relatively small, however, thanks to the widespread use of screens and air conditioning, which limit Americans' exposure to mosquito bites. http://www.usatoday.com/story/news/nation/2016/08/16/texas-zika-case-linked-miami-travel/88807766/

LOCUS KX447516 10654 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0111_PF polyprotein gene, complete cds. ACCESSION KX447516 VERSION KX447516.1 GI:1041521224 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10654 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0111_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Jan-2014" /note="Vero cells; one passage; genotype: Asian" CDS 85..10356 /codon_start=1 /product="polyprotein" /protein_id="ANO46308.1" /db_xref="GI:1041521225" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSKKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 actgcgacag ttcgagtttg aagcgaaagc tagcaacagt atcaacaggt tttattttgg 61 atttggaaac gagagtttct ggtcatgaaa aacccaaaaa agaaatccgg aggattccgg 121 attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc cctttggggg cttgaagagg 181 ctgccagccg gacttctgct gggtcatggg cccatcagga tggtcttggc gattctagcc 241 tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg 301 gggaaaaaag aggctatgga aataataaag aagttcaaga aagatctggc tgccatgctg 361 agaataatca atgctaggaa ggagaagaag agacgaggcg cagatactag tgtcggaatt 421 gttggcctcc tgctgaccac agctatggca gcggaggtca ctagacgtgg gagtgcatac 481 tatatgtact tggacagaaa cgatgctggg gaggccatat cttttccaac cacattgggg 541 atgaataagt gttatataca gatcatggat cttggacaca tgtgtgatgc caccatgagc 601 tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaac 661 acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga 721 tctagaagag ctgtgacgct cccctcccat tccactagga agctgcaaac gcggtcgcaa 781 acctggttgg aatcaagaga atacacaaag cacttgatta gagtcgaaaa ttggatattc 841 aggaaccctg gcttcgcgtt agcagcagct gccatcgctt ggcttttggg aagttcaacg 901 agcaaaaaag tcatatactt ggtcatgata ctgctgattg ccccggcata cagcatcagg 961 tgcataggag tcagcaatag ggactttgtg gaaggtatgt caggtgggac ttgggttgat 1021 gttgtcttgg aacatggagg ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac 1081 atagagctgg ttacaacaac agtcagcaac atggcggagg taagatccta ctgctatgag 1141 gcatcaatat cggacatggc ttcggacagc cgctgcccaa cacaaggtga agcctacctt 1201 gacaagcaat cagacactca atatgtctgc aaaagaacgt tagtggacag aggctgggga 1261 aatggatgtg gactttttgg caaagggagc ctggtgacat gcgctaagtt tgcatgctcc 1321 aagaaaatga ccgggaagag catccagcca gagaatctgg agtaccggat aatgctgtca 1381 gttcatggct cccagcacag tgggatgatc gttaatgaca caggacatga aactgatgag 1441 aatagagcga aggttgagat aacgcccaat tcaccaagag ccgaagccac cctggggggt 1501 tttggaagcc taggacttga ttgtgaaccg aggacaggcc ttgacttttc agatttgtat 1561 tacttgacta tgaataacaa gcactggttg gttcacaagg agtggttcca cgacattcca 1621 ttaccttggc acgctggggc agacaccgga actccacact ggaacaacaa agaagcactg 1681 gtagagttca aggacgcaca tgccaaaagg caaactgtcg tggttctagg gagtcaagaa 1741 ggagcagttc acacggccct tgctggagct ctggaggctg agatggatgg tgcaaaggga 1801 aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc 1861 gtgtcatact ccttgtgtac cgcagcgttc acattcacca agatcccggc tgaaacactg 1921 cacgggacag tcacagtgga ggtacagtac gcagggacag atggaccttg caaggttcca 1981 gctcagatgg cggtggacat gcaaactctg accccagttg ggaggttgat aaccgctaac 2041 cccgtaatca ctgaaagcac tgagaactct aagatgatgc tggaacttga tccaccattt 2101 ggggactctt acattgtcat aggagtcggg gagaagaaga tcacccacca ctggcacagg 2161 agtggcagca ccattggaaa agcatttgaa gccactgtga gaggtgccaa gagaatggca 2221 gtcttgggag acacagcctg ggactttgga tcagttggag gcgctctcaa ctcattgggc 2281 aagggcatcc atcaaatttt tggagcagct ttcaaatcat tgtttggagg aatgtcctgg 2341 ttctcacaaa ttctcattgg gacgttgctg atgtggttgg gtctgaacac aaagaatgga 2401 tctatttccc ttatgtgctt ggccttaggg ggagtgttga tcttcttatc cacagccgtc 2461 tctgctgatg tggggtgctc ggtggacttc tcaaagaagg agacgagatg cggtacaggg 2521 gtgttcgtct ataacgacgt tgaagcctgg agggacaggt acaagtacca tcctgactcc 2581 ccccgtagat tggcagcagc agtcaagcaa gcctgggaag atggtatctg tgggatctcc 2641 tctgtttcaa gaatggaaaa catcatgtgg agatcagtag aaggggagct caacgcaatc 2701 ctggaagaga atggagttca actgacggtc gttgtgggat ctgtaaaaaa ccccatgtgg 2761 agaggtccac agagattgcc cgtgcctgtg aacgagttgc cccacggctg gaaggcttgg 2821 gggaaatcgt acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac 2881 acactgaagg aatgcccact caaacataga gcatggaaca gctttcttgt ggaggatcat 2941 gggttcgggg tatttcacac tagtgtctgg ctcaaggtta gagaagatta ttcattagag 3001 tgtgatccag ccgttattgg aacagctgtt aagggaaagg aggctgtaca cagtgatcta 3061 ggctactgga ttgagagtga gaagaatgac acatggaggc tgaagagggc ccatctgatc 3121 gagatgaaaa catgtgaatg gccaaagtcc cacacattgt ggacagatgg aatagaagag 3181 agtgatctga tcatacccaa gtctttagct gggccactca gccatcacaa taccagagag 3241 ggctacagga cccaaatgaa agggccatgg cacagtgaag agcttgaaat tcggtttgag 3301 gaatgcccag gcactaaggt ccacgtggag gaaacatgtg gaacaagagg accatctctg 3361 agatcaacca ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga gtgcacaatg 3421 cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagat aaggcccagg 3481 aaagaaccag aaagtaactt agtaaggtca atggtgactg caggatcaac tgatcacatg 3541 gatcacttct cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag 3601 agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtagc tatgatcctg 3661 ggaggatttt caatgagtga cctggctaag cttgcaattt tgatgggtgc caccttcgcg 3721 gaaatgaaca ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga 3781 ccagcgttgc tggtatcttt catcttcaga gctaattgga caccccgtga aagcatgctg 3841 ctggccttgg cctcgtgtct tttgcaaact gcgatctccg ccttggaagg cgacctgatg 3901 gttctcatca atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc 3961 actgataaca tcaccttggc aatcctggct gctctgacac cactggcccg gggcacactg 4021 cttgtggcgt ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag 4081 ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg 4141 aggctggtcg accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg 4201 agctggcccc ctagcgaagt actcacagct gttggcttga tatgcgcatt ggctggaggg 4261 ttcgccaagg cagatataga gatggctggg cccatggccg cggtcggtct gctaattgtc 4321 agttacgtgg tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca 4381 tgggaaaaag atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag 4441 agtggtgatt tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag 4501 gtggtcctga tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg 4561 tggtacgtat acgtgaagac tggaaaaagg agtggtgctc tatgggatgt gcctgctccc 4621 aaggaagtaa aaaaggggga gaccacagat ggagtgtaca gagtaatgac tcgtagactg 4681 ctaggttcaa cacaagttgg agtgggagtt atgcaagagg gggtctttca cactatgtgg 4741 cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga 4801 gatgtcaagc aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac 4861 gggcacagcg aggtgcagct cttggccgtg ccccccggag agagagcgag gaacatccag 4921 actctgcccg gaatatttaa gacaaaggat ggggacattg gagcggttgc gctggattac 4981 ccagcaggaa cttcaggatc tccaatccta gacaagtgtg ggagagtgat aggactttat 5041 ggcaatgggg tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca agggaggagg 5101 gaggaagaga ctcctgttga gtgcttcgag ccttcgatgc tgaagaagaa gcagctaact 5161 gtcttagact tgcatcctgg agctgggaaa accaggagag ttcttcctga aatagtccgt 5221 gaagccataa aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct 5281 gaaatggagg aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc 5341 acccactctg gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgtcta 5401 ctacagccaa tcagagtccc caactataat ctgtatatta tggatgaggc ccacttcaca 5461 gatccctcaa gtatagcagc aagaggatac atttcaacaa gggttgagat gggcgaggcg 5521 gctgccatct tcatgaccgc cacgccacca ggaacccgtg acgcatttcc ggactccaac 5581 tcaccaatta tggacaccga agtggaagtc ccagagagag cctggagctc aggctttgat 5641 tgggtgacgg atcattctgg aaaaacagtt tggtttgttc caagcgtgag gaacggcaat 5701 gagatcgcag cttgtctgac aaaggctgga aaacgggtca tacagctcag cagaaagact 5761 tttgagacag agttccagaa aacaaaacat caagagtggg actttgtcgt gacaactgac 5821 atttcagaga tgggcgccaa ctttaaagct gaccgtgtca tagattccag gagatgccta 5881 aagccggtca tacttgatgg cgagagagtc attctggctg gacccatgcc tgtcacacat 5941 gccagcgctg cccagaggag ggggcgcata ggcaggaatc ccaacaaacc tggagatgag 6001 tatctgtatg gaggtgggtg cgcagagact gacgaagacc atgcacactg gcttgaagca 6061 agaatgctcc ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct 6121 gaggccgaca aagtagcagc cattgaggga gagttcaagc ttaggacgga gcaaaggaag 6181 acctttgtgg aactcatgaa aagaggagat cttcctgttt ggctggccta tcaggttgca 6241 tctgccggaa taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc 6301 ataatggaag acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc 6361 aaaccgaggt ggatggacgc cagagtttgt tcagatcatg cggccctgaa gtcattcaag 6421 gagtttgccg ctgggaaaag aggagcggct tttggagtga tggaagccct gggaacactg 6481 ccaggacaca tgacagagag attccaggaa gccattgaca acctcgctgt gctcatgcgg 6541 gcagagactg gaagcaggcc ttacaaagcc gcggcggccc aattgccgga gaccctagag 6601 accattatgc ttttggggtt gctgggaaca gtctcgctgg gaatcttttt cgtcttgatg 6661 aggaacaagg gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg 6721 ctcatgtggc tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgttc 6781 ctattgctgg tggtgctcat acctgagcca gaaaagcaaa gatctcccca ggacaaccaa 6841 atggcaatca tcatcatggt agcagtaggt cttctgggct tgattaccgc caatgaactc 6901 ggatggttgg agagaacaaa gagtgaccta agccatctaa tgggaaggag agaggagggg 6961 gcaaccatag gattctcaat ggacattgac ctgcggccag cctcagcttg ggccatctat 7021 gctgccttga caactttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac 7081 aactactcct taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg 7141 atgccattct acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa 7201 ttaacacccc tgaccctaat agtggccatc attttgctcg tggcgcacta catgtacttg 7261 atcccagggc tgcaggcagc agctgcgcgt gctgcccaga agagaacggc agctggcatc 7321 atgaagaacc ctgttgtgga tggaatagtg gtgactgaca ttgacacaat gacaattgac 7381 ccccaagtgg agaaaaagat gggacaggtg ctactcatag cagtagccgt ctccagcgcc 7441 atactgtcgc ggaccgcctg ggggtggggg gaggctgggg ccctgatcac agctgcaact 7501 tccactttgt gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg 7561 tgtaacattt ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga 7621 aacgctggct tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg 7681 aaggcccgct tgaaccagat gtcggccctg gagttctact cctacaaaaa gtcaggcatc 7741 accgaggtgt gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc 7801 catgctgtgt cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag 7861 ccctatggaa aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc 7921 accatccgca aagttcaaga agtgaaagga tacacaaaag gaggccctgg tcatgaagaa 7981 cccatgttgg tgcaaagcta tgggtggaac atagtccgtc ttaagagtgg ggtggacgtc 8041 tttcatatgg cggctgagcc gtgtgacacg ttgctgtgtg acataggtga gtcatcatcc 8101 agtcctgaag tggaagaagc acggacgctc agagtcctct ccatggtggg ggattggctt 8161 gaaaaaagac caggagcctt ttgtataaaa gtgttgtgcc catacaccag cactatgatg 8221 gaaaccctgg agcgactgca gcgtaggtat gggggaggac tggtcagagt gccactctcc 8281 cgcaactcta cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt 8341 gtgtccacca cgagccagct cctcttgggg cgcatggacg ggcccaggag gccagtgaaa 8401 tatgaggagg atgtgaatct cggctctggc acgcgggctg tggtaagctg cgctgaagct 8461 cccaacatga agatcattgg taaccgcatt gaaaggatcc gcagtgagca cgcggaaacg 8521 tggttctttg acgagaacca cccatatagg acatgggctt accatggaag ctatgaggcc 8581 cccacacaag ggtcagcgtc ctctctaata aacggggttg tcaggctcct gtcaaaaccc 8641 tgggatgtgg tgactggagt cacaggaata gccatgaccg acaccacacc gtatggtcag 8701 caaagagttt tcaaggaaaa agtggacact agggtgccag acccccaaga aggcactcgt 8761 caggttatga gcatggtctc ttcctggttg tggaaagagc taggcaaaca caaacggcca 8821 cgagtctgta ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc actaggggca 8881 atatttgaag aggaaaaaga gtggaagact gcagtggaag ctgtgaacga tccaaggttc 8941 tgggctctag tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg 9001 tacaacatga tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caagggcagc 9061 cgcgccatct ggtatatgtg gctaggggct agatttctag agttcgaagc ccttggattc 9121 ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga agggctggga 9181 ttacaaagac tcggatatgt cctagaagag atgagtcgca taccaggagg aaggatgtat 9241 gcagatgaca ctgctggctg ggacacccgc atcagcaggt ttgatctgga gaatgaagct 9301 ctaatcacca accaaatgga gaaagggcac agggccttgg cattggccat aatcaagtac 9361 acataccaaa acaaagtggt aaaggtcctt agaccagctg aaaaagggaa gacagttatg 9421 gacattattt cgagacaaga ccaaaggggg agcggacaag ttgtcactta cgctcttaac 9481 acatttacca acctagtggt gcaactcatt cggaatatgg aggctgagga agttctagag 9541 atgcaagact tgtggctgct gcggaggtca gagaaagtga ccaactggtt gcagagcaac 9601 ggatgggata ggctcaaacg aatggcagtc agtggagatg attgcgttgt gaagccaatt 9661 gatgataggt ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt taggaaggac 9721 acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc gttttgctcc 9781 caccacttca acaagctcca tctcaaggac gggaggtcca ttgtggttcc ctgccgccac 9841 caagatgaac tgattggccg ggcccgcgtc tctccagggg cgggatggag catccgggag 9901 actgcttgcc tagcaaaatc atatgcgcaa atgtggcagc tcctttattt ccacagaagg 9961 gacctccgac tgatggccaa tgccatttgt tcatctgtgc cagttgactg ggttccaact 10021 gggagaacta cctggtcaat ccatggaaag ggagaatgga tgaccactga agacatgctt 10081 gtggtgtgga acagagtgtg gattgaggag aacgaccaca tggaagacaa gaccccagtt 10141 acgaaatgga cagacattcc ctatttggga aaaagggaag acttgtggtg tggatctctc 10201 atagggcaca gaccgcgcac cacctgggct gagaacatta aaaacacagt caacatggtg 10261 cgcaggatca taggtgatga agaaaagtac atggactacc tatccaccca agttcgctac 10321 ttgggtgaag aagggtctac acctggagtg ctgtaagcac caatcttagt gttgtcaggc 10381 ctgctagtca gccacagctt ggggaaagct gtgcagcctg tgaccccccc aggagaagct 10441 gggaaaccaa gcctatagtc aggccgagaa cgccatggca cggaagaagc catgctgcct 10501 gtgagcccct cagaggacac tgagtcaaaa aaccccacgc gcttggaggc gcaggatggg 10561 aaaagaaggt ggcgaccttc cccacccttc aatctggggc ctgaactgga gatcagctgt 10621 ggatctccag aagagggact agtggttaga ggag

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18525 18525 100% 0.0 100% KX447517.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18447 18447 100% 0.0 99% KX447509.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18444 18444 100% 0.0 99% KX369547.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18444 18444 100% 0.0 99% KJ776791.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX447513.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX447516.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18426 18426 100% 0.0 99% KX447510.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18399 18399 100% 0.0 99% KU509998.3 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18381 18381 100% 0.0 99% KX280026.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18381 18381 100% 0.0 99% KX051563.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU991811.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18375 18375 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18375 18375 100% 0.0 99% KU365779.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18375 18375 100% 0.0 99% KU321639.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18366 18366 100% 0.0 99% KU729218.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18363 18363 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18363 18363 100% 0.0 99% KX197192.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU365780.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18357 18357 100% 0.0 99% KX117076.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18357 18357 100% 0.0 99% KU365777.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18354 18354 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18354 18354 100% 0.0 99% KX247646.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18354 18354 100% 0.0 99% KX198135.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18354 18354 100% 0.0 99% KX156776.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18354 18354 100% 0.0 99% KU926309.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18350 18350 99% 0.0 99% KU497555.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX185891.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18348 18348 100% 0.0 99% KX156774.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU963796.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18348 18348 100% 0.0 99% KU940228.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18348 18348 100% 0.0 99% KU647676.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU820897.3 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18345 18345 100% 0.0 99% KX253996.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18345 18345 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18345 18345 100% 0.0 99% KX087102.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18345 18345 100% 0.0 99% KU820899.2 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU501217.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU312312.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18341 18341 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU866423.2 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU729217.2 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18339 18339 100% 0.0 99% KU527068.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18339 18339 100% 0.0 99% KU501216.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX247632.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU937936.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18336 18336 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18330 18330 100% 0.0 99% KX601168.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX520666.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18330 18330 100% 0.0 99% KX087101.2 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18330 18330 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18327 18327 100% 0.0 99% KX446951.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18327 18327 100% 0.0 99% KX377337.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18327 18327 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18327 18327 100% 0.0 99% KU922923.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18327 18327 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18325 18325 100% 0.0 99% KU853012.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18321 18321 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18321 18321 100% 0.0 99% KU870645.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU761564.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18303 18303 100% 0.0 99% KX673530.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18254 18254 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18150 18150 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18123 18123 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17825 17825 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17825 17825 99% 0.0 99% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17769 17769 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17670 17670 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17524 17524 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16482 16482 100% 0.0 96% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16475 16475 99% 0.0 96% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16469 16469 100% 0.0 96% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16253 16253 88% 0.0 99% KX447518.1

Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18525 18525 100% 0.0 100% KX673530.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18438 18438 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18438 18438 100% 0.0 99% KU853012.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447510.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18348 18348 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18348 18348 100% 0.0 99% KU509998.3 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447509.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18345 18345 100% 0.0 99% KX280026.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU991811.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KJ776791.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18339 18339 100% 0.0 99% KX447513.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18336 18336 100% 0.0 99% KX447511.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18336 18336 100% 0.0 99% KU729217.2 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18336 18336 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18330 18330 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18330 18330 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18327 18327 100% 0.0 99% KX447516.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18327 18327 100% 0.0 99% KU940228.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18327 18327 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365779.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18321 18321 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18321 18321 100% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18321 18321 100% 0.0 99% KU926309.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18318 18318 100% 0.0 99% KU527068.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18312 18312 100% 0.0 99% KX198135.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18312 18312 100% 0.0 99% KU926310.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365780.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KX520666.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU647676.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18309 18309 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18303 18303 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18303 18303 100% 0.0 99% KX156776.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU501217.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18300 18300 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18300 18300 99% 0.0 99% KU497555.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18300 18300 100% 0.0 99% KU501216.1 Select seq gb|KU820897.3| Zika virus isolate FLR polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU820897.3 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18294 18294 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18294 18294 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18294 18294 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18291 18291 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18285 18285 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18285 18285 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18285 18285 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18282 18282 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18282 18282 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18282 18282 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18282 18282 100% 0.0 99% KU870645.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18276 18276 100% 0.0 99% KX377337.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18267 18267 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU955590.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18254 18254 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18245 18245 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18240 18240 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18240 18240 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18240 18240 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18236 18236 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18236 18236 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18231 18231 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18101 18101 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18011 18011 100% 0.0 99% KU681081.3 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17704 17704 100% 0.0 98% KU955593.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17703 17703 99% 0.0 98% JN860885.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17667 17667 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17549 17549 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17401 17401 100% 0.0 98% KU681082.3 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16374 16374 100% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16366 16366 99% 0.0 95% HQ234499.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16361 16361 100% 0.0 95% KX377336.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16208 16208 88% 0.0 99% KX447518.1

LOCUS KX673530 10689 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate PHE_semen_Guadeloupe, complete genome. ACCESSION KX673530 VERSION KX673530.1 GI:1050405299 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10689) AUTHORS Atkinson,B., Pullan,S.T., Miles,R.W., Lewandowski,K., Graham,V.A., Dowall,S.D. and Hewson,R. TITLE Complete genomic sequence of Zika virus isolated from a clinical semen sample JOURNAL Unpublished REFERENCE 2 (bases 1 to 10689) AUTHORS Atkinson,B., Pullan,S.T., Miles,R.W., Lewandowski,K., Graham,V.A., Dowall,S.D. and Hewson,R. TITLE Direct Submission JOURNAL Submitted (09-AUG-2016) Research, Public Health England, Manor Farm Road, Salisbury, Wiltshire SP4 0JG, UK COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.5 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10689 /organism="Zika virus" /mol_type="genomic RNA" /isolate="PHE_semen_Guadeloupe" /isolation_source="semen" /db_xref="taxon:64320" /country="United Kingdom" /collection_date="21-Apr-2016" /note="passage details: 1 passage c6/36 followed by 1 passage vero; virus contracted while visiting Guadeloupe" CDS 92..10363 /codon_start=1 /product="polyprotein" /protein_id="ANZ46736.1" /db_xref="GI:1050405300" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTIEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gaatcagact gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt 61 attttggatt tggaaacgag agtttctggt catgaaaaac ccaaaaaaga aatccggagg 121 attccggatt gtcaatatgc taaaacgcgg agtagcccgt gtgagcccct ttgggggctt 181 gaagaggctg ccagccggac ttctgctggg tcatgggccc atcaggatgg tcttggcgat 241 tctagccttt ttgagattca cggcaatcaa gccatcactg ggtctcatca atagatgggg 301 ttcagtgggg aaaaaagagg ctatggaaat aataaagaag ttcaagaaag atctggctgc 361 catgctgaga ataatcaatg ctaggaagga gaagaagaga cgaggcgcag atactagtgt 421 cggaattgtt ggcctcctgc tgaccacagc tatggcagcg gaggtcacta gacgtgggag 481 tgcatactac atgtacttgg acagaaacga tgctggggag gccatatctt ttccaaccac 541 attggggatg aataagtgtt atatacagat catggatctt ggacacatgt gtgatgccac 601 catgagctat gaatgcccta tgctggatga gggggtggaa ccagatgacg tcgattgttg 661 gtgcaacacg acgtcaactt gggttgtgta cggaacctgc catcacaaaa aaggtgaagc 721 acggagatct agaagagctg tgacgctccc ctcccattcc actaggaagc tgcaaacgcg 781 gtcgcaaacc tggttggaat caagagaata cacaaagcac ttgattagag tcgaaaattg 841 gatattcagg aaccctggct tcgcgttagc agcagctgcc atcgcttggc ttttgggaag 901 ctcaacgagc caaaaagtca tatacttggt catgatactg ctgattgccc cggcatacag 961 catcaggtgc ataggagtca gcaataggga ctttgtggaa ggtatgtcag gtgggacttg 1021 ggttgatgtt gtcttggaac atggaggttg tgtcaccgta atggcacagg acaaaccgac 1081 tgtcgacata gagctggtta caacaacagt cagcaacatg gcggaggtga gatcctactg 1141 ctatgaggca tcaatatcag acatggcttc ggacagccgc tgcccaacac aaggtgaagc 1201 ctaccttgac aagcaatcag acactcaata tgtctgcaaa agaacgttag tggacagagg 1261 ctggggaaat ggatgtggac tttttggcaa agggagcctg gtgacatgcg ctaagtttgc 1321 atgctccaag aaaatgaccg ggaagagcat ccagccagag aatctggagt accggataat 1381 gctgtcagtt catggctccc agcacagtgg gatgatcgtt aatgacacag gacatgaaac 1441 tgatgagaat agagcgaagg ttgagataac gcccaattca ccaagagccg aagccaccct 1501 ggggggtttt ggaagcctag gacttgattg tgaaccgagg acaggccttg acttttcaga 1561 tttgtattac ttgactatga ataacaagca ctggttggtt cacaaggagt ggttccacga 1621 cattccatta ccttggcacg ctggggcaga caccggaact ccacactgga acaacaaaga 1681 agcactggta gagttcaagg acgcacatgc caaaaggcaa actgtcgtgg ttctagggag 1741 tcaagaagga gcagttcaca cggcccttgc tggagctctg gaggctgaga tggatggtgc 1801 aaagggaagg ctgtcctctg gccacttgaa atgtcgcctg aaaatggata aacttagatt 1861 gaagggcgtg tcatactcct tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga 1921 aacactgcac gggacagtca cagtggaggt acagtacgca gggacagatg gaccttgcaa 1981 ggttccagct cagatggcgg tggacatgca aactctgacc ccagttggga ggttgataac 2041 cgccaacccc gtaatcactg aaagcactga gaactctaag atgatgctgg aacttgatcc 2101 accatttggg gactcttaca ttgtcatagg agtcggggag aagaagatca cccaccactg 2161 gcacaggagt ggcagcacca ttggaaaagc atttgaagcc actgtgagag gtgccaagag 2221 aatggcagtc ttgggagaca cagcctggga cttcggatca gttggaggcg ctctcaactc 2281 attgggcaag ggcatccatc aaatttttgg agcagctttc aaatcattgt ttggaggaat 2341 gtcctggttc tcacaaatcc tcattggaac gttgctgatg tggttgggtc tgaacacaaa 2401 gaatggatct atttccctca tgtgcttggc cttaggggga gtgttgatct tcttatccac 2461 agccgtctct gctgatgtgg ggtgctcggt ggacttctca aagaaggaga cgagatgcgg 2521 tacaggggtg ttcgtctata acgacgttga agcctggagg gacaggtaca agtaccatcc 2581 tgactccccc cgtagattgg cagcagcagt caagcaagcc tgggaagatg gtatctgcgg 2641 gatctcctct gtttcaagaa tggaaaacat catgtggaga tcagtagaag gggagctcaa 2701 tgcaatcctg gaagagaatg gagttcaact gacggtcgtt gtgggatctg taaaaaaccc 2761 catgtggaga ggtccacaga gattgcccgt gcctgtgaac gagctgcccc acggctggaa 2821 ggcttggggg aaatcgtact tcgttagagc agcaaagaca aataacagct ttgtcgtgga 2881 tggtgacaca ctgaaggaat gcccactcaa acatagagca tggaacagct ttcttgtgga 2941 ggatcatggg ttcggggtat ttcacactag tgtctggctc aaggttagag aagattattc 3001 attagagtgt gatccagccg ttattggaac agctgttaag ggaaaggagg ctgtacacag 3061 tgatctaggc tactggattg agagtgagaa gaatgacaca tggaggctga agagggccca 3121 tctgatcgag atgaaaacat gtgaatggcc aaagtcccac acattgtgga cagatggaat 3181 agaagagagt gatctgatca tacccaagtc tttagctggg ccactcagcc atcacaatac 3241 cagagagggc tacaggaccc aaatgaaagg gccatggcac agtgaagagc ttgaaattcg 3301 gtttgaggaa tgcccaggca ctaaggtcca cgtggaggaa acatgtggaa caagaggacc 3361 atctctgaga tcaaccactg caagcggaag ggtgatcgag gaatggtgct gcagggagtg 3421 cacaatgccc ccactgtcgt tccgggctaa agatggctgt tggtatggaa tggagataag 3481 gcccaggaaa gaaccagaaa gcaacttagt aaggtcagtg gtgactgcag gatcaactga 3541 tcacatggat cacttctccc ttggagtgct tgtgattctg ctcatggtgc aggaagggct 3601 gaagaagaga atgaccacaa agatcatcat aagcacatca atggcagtgc tggtagctat 3661 gatcctggga ggattttcaa tgagtgacct ggctaagctt gcaattttga tgggtgccac 3721 cttcgcggaa atgaacactg gaggagatgt agctcatctg gcgctgatag cggcattcaa 3781 agtcagacca gcgttgctgg tatctttcat cttcagggct aattggacac cccgtgaaag 3841 catgctgctg gccttggcct cgtgtctttt gcaaactgcg atctccgcct tggaaggcga 3901 cctgatggtt ctcatcaatg gttttgcttt ggcctggttg gcaatacgag cgatggttgt 3961 tccacgcact gataacatca ccttggcaat cctggctgct ctgacaccac tggcccgggg 4021 cacactgctt gtggcgtgga gagctggcct tgctacttgc ggggggttta tgctcctctc 4081 tctgaaggga aaaggcagtg tgaagaagaa cttaccattt gtcatggccc tgggactaac 4141 cgctgtgaga ctggtcgacc ccatcaacgt ggtgggactg ctgttgctca caaggagtgg 4201 gaagcggagc tggcccccta gcgaagtact cacagctgtt ggcctgatat gcgcattggc 4261 tggagggttc gccaaggcag atatagagat ggctgggccc atggccgcgg tcggtctgct 4321 aattgtcagt tacgtggtct caggaaagag tgtggacatg tacattgaaa gagcaggtga 4381 catcacatgg gaaaaagatg cggaagtcac tggaaacagt ccccggctcg atgtggcgct 4441 agatgagagt ggtgatttct ccctggtgga ggatgacggt ccccccatga gagagatcat 4501 actcaaggtg gtcctgatga ccatctgtgg catgaaccca atagccatac cctttgcagc 4561 tggagcgtgg tacgtatacg tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc 4621 tgctcccaag gaagtaaaaa agggggagac cacagatgga gtgtacagag taatgactcg 4681 tagactgcta ggttcaacac aagttggagt gggagttatg caagaggggg tctttcacac 4741 tatgtggcac gtcacaaaag gatccgcgct gagaagcggt gaagggagac ttgatccata 4801 ctggggagat gtcaagcagg atctggtgtc atactgtggt ccatggaagc tagatgccgc 4861 ctgggacggg cacagcgagg tgcagctctt ggccgtgccc cccggagaga gagcgaggaa 4921 catccagact ctgcccggaa tatttaagac aaaggatggg gacattggag cggttgcgct 4981 ggattaccca gcaggaactt caggatctcc aatcctagac aagtgtggga gagtgatagg 5041 actttatggc aatggggtcg tgatcaaaaa tgggagttat gttagtgcca tcacccaagg 5101 gaggagggag gaagagactc ctgttgagtg cttcgagcct tcgatgctga agaagaagca 5161 gctaactgtc ttagacttgc accctggagc tgggaaaacc aggagagttc ttcctgaaat 5221 agtccgtgaa gctataaaaa caagactccg tactgtgatc ttagctccaa ccagggttgt 5281 cgctgctgaa atggaggaag cccttagagg gcttccagtg cgttatatga caacagcagt 5341 caatgtcacc cattctggaa cagaaatcgt cgacttaatg tgccatgcca ccttcacttc 5401 acgtctacta cagccaatca gagtccccaa ctataatctg tatattatgg atgaggccca 5461 cttcacagat ccctcaagta tagcagcaag aggatacatt tcaacaaggg ttgagatggg 5521 cgaggcggct gccatcttca tgaccgccac gccaccagga acccgtgacg catttccgga 5581 ctccaactca ccaattatgg acaccgaagt ggaagtccca gagagagcct ggagctcagg 5641 ctttgattgg gtgacggatc attctggaaa aacagtttgg tttgttccaa gcgtgaggaa 5701 cggcaatgag atcgcagctt gtctgacaaa ggctggaaaa cgggtcatac agctcagcag 5761 aaagactttt gagacagagt tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac 5821 aaccgacatt tcagagatgg gcgccaactt taaagctgac cgtgtcatag attccaggag 5881 atgcctaaag ccggtcatac ttgatggcga gagagtcatt ctggctggac ccatgcctgt 5941 cacacatgcc agcgctgccc agaggagggg gcgcataggc aggaatccca acaaacctgg 6001 agatgagtat ctgtatggag gtgggtgcgc agagactgac gaagaccatg cacactggct 6061 tgaagcaaga atgctccttg acaatattta cctccaagat ggcctcatag cctcgctcta 6121 tcgacctgag gccgacaaag tagcagccat tgagggagag ttcaagctta ggacggagca 6181 aaggaagacc tttgtggaac tcatgaaaag aggagatctt cctgtttggc tggcctatca 6241 ggttgcatct gccggaataa cttacacaga tagaagatgg tgctttgatg gcacgaccaa 6301 caacaccata atggaagaca gtgtgccggc agaggtgtgg accagacacg gagagaaaag 6361 agtgctcaaa ccgaggtgga tggacgccag agtttgttca gatcatgcgg ccctgaagtc 6421 attcaaggag tttgccgctg ggaaaagagg agcggctttt ggagtgatgg aagccctggg 6481 aacactgcca ggacacatga cagagagatt ccaggaagcc attgacaacc tcgctgtgct 6541 catgcgggca gagactggaa gcaggcctta caaagccgcg gcggcccaat tgccggagac 6601 cctagagacc attatgcttt tggggttgct gggaacagtc tcgctgggaa tctttttcgt 6661 cttgatgagg aacaagggca tagggaagat gggctttgga atggtgactc ttggggccag 6721 cgcatggctc atgtggctct cggaaattga gccagccaga attgcatgtg tcctcattgt 6781 tgtgttccta ttgctggtgg tgctcatacc tgagccagaa aagcaaagat ctccccagga 6841 caaccaaatg gcaatcatca tcatggtagc agtaggtctt ctgggcttga tcaccgccaa 6901 tgaactcgga tggttggaga gaacaaagag tgacctaagc catctaatgg gaaggagaga 6961 ggagggggca accataggat tctcaatgga cattgacctg cggccagcct cagcttgggc 7021 catctatgct gccttgacaa ctttcattac cccagccgtc caacatgcag tgaccacttc 7081 atacaacaac tactccttaa tggcgatggc cacgcaagct ggagtgttgt ttggtatggg 7141 caaagggatg ccattctacg catgggactt tggagtcccg ctgctaatga taggttgcta 7201 ctcacaatta acacccctga ccctaatagt ggccatcatt ttgctcgtgg cgcactacat 7261 gtacttgatc ccagggctgc aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc 7321 tggcatcatg aagaaccctg tcgtggatgg aatagtggtg actgacattg acacaatgac 7381 aattgacccc caagtggaga aaaagatggg acaggtgcta ctcatagcag tagccgtctc 7441 cagcgccata ctgtcgcgga ccgcctgggg gtggggggag gctggggccc tgatcacagc 7501 cgcaacttcc actttgtggg aaggctctcc gaacaagtac tggaactcct ctacagccac 7561 ttcactgtgt aacattttta ggggaagtta cttggctgga gcttctctaa tctacacagt 7621 aacaagaaac gctggcttgg tcaagagacg tgggggtgga acaggagaga ccctgggaga 7681 gaaatggaag gcccgcttga accagatgtc ggccctggag ttctactcct acaaaaagtc 7741 aggcatcacc gaggtgtgca gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac 7801 gggaggccat gctgtgtccc gaggaagtgc aaagctgaga tggttggtgg agcggggata 7861 cctgcagccc tatggaaagg tcattgatct tggatgtggc agagggggct ggagttacta 7921 cgccgccacc atccgcaaag ttcaagaagt gaaaggatac acaaaaggag gccctggtca 7981 tgaagaaccc gtgttggtgc agagctatgg gtggaacata gtccgtctca agagtggggt 8041 ggacgtcttt catatggcgg ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc 8101 atcatctagt cctgaagtgg aagaagcacg gacgctcaga gtcctctcca tggtggggga 8161 ttggcttgaa aaaagaccag gagccttttg tataaaagtg ttgtgcccat acaccagcac 8221 tatgatggaa accctggagc ggctgcagcg taggtatggg ggaggactgg tcagagtgcc 8281 actctcccgc aactctacac atgagatgta ctgggtctct ggagcgaaaa gcaacaccat 8341 aaaaagtgtg tccaccacga gccagctcct cttggggcgc atggacgggc ctaggaggcc 8401 agtgaaatat gaggaggatg tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc 8461 tgaagctccc aacatgaaga tcattggtaa ccgcattgaa aggatccgca gtgagcacgc 8521 ggaaacgtgg ttctttgacg agaaccaccc atataggaca tgggcttacc atggaagcta 8581 tgaggccccc acacaagggt cagcatcctc tctagtaaac ggggttgtca ggctcctgtc 8641 aaaaccctgg gatgtggtga ctggagtcac aggaatagcc atgaccgaca ccacaccgta 8701 tggtcagcaa agagttttca aggaaaaagt ggacactagg gtgccagacc cccaagaagg 8761 cactcgtcag gttatgagca tggtctcttc ctggttgtgg aaagagctag gcaaacacaa 8821 acggccacga gtctgtacca aagaagagtt catcaacaag gttcgtagca atgcagcatt 8881 aggggcaata tttgaagagg aaaaagagtg gaagactgca gtggaagctg tgaacgatcc 8941 aaggttctgg gctctagtgg acaaggaaag agagcaccac ctgagaggag agtgccagag 9001 ttgtgtgtac aacatgatgg gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa 9061 gggcagccgc gccatctggt atatgtggct aggggctaga tttttagagt tcgaagccct 9121 tggattcttg aacgaggatc actggatggg gagagagaac tcaggaggtg gtgttgaagg 9181 gctgggatta caaagactcg gatatgtcct agaagagatg agtcgcatac caggaggaag 9241 gatgtatgca gatgacactg ctggctggga tacccgcatc agcaggtttg atctagagaa 9301 tgaagctcta atcaccaacc aaatggagaa agggcacagg gccttggcat tggccataat 9361 caagtacaca taccaaaaca aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac 9421 agttatggac attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc 9481 tcttaacaca tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt 9541 tctagagatg caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca 9601 gagcaacgga tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa 9661 gccaattgat gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag 9721 gaaggacaca caagagtgga aaccctcaac tggatgggac aactgggaag aagttccgtt 9781 ttgctcccac cacttcaaca agctccatct caaggacggg aggtccattg tggttccctg 9841 ccgccaccaa gatgaactga ttggccgggc ccgcgtctct ccaggggcgg gatggagcat 9901 ccgggagact gcttgcctag caaaatcata tgcgcaaatg tggcagctcc tttatttcca 9961 cagaagggac ctccgactga tggccaatgc catttgctca tctgtgccag ttgactgggt 10021 tccaactggg agaactacct ggtcaatcca tggaaaggga gaatggatga ccattgaaga 10081 catgcttgtg gtgtggaaca gagtgtggat tgaggagaac gaccacatgg aagacaagac 10141 cccagttacg aaatggacag acattcccta tttgggaaaa agggaagact tgtggtgtgg 10201 atctctcata gggcacagac cgcgcaccac ctgggctgag aacattaaaa acacagtcaa 10261 catggtgcgc aggatcatag gtgaggaaga aaagtacatg gactacctat ccacccaagt 10321 tcgctacttg ggtgaagaag ggtctacacc tggagtgctg taagcaccaa tcttaatgtt 10381 gtcaggcctg ctagtcagcc acagcttggg gaaagctgtg cagcctgtga cccccccagg 10441 agaagctggg aaaccaagcc tatagtcagg ccgagaacgc catggcacgg aagaagccat 10501 gctgcctgtg agcccctcag aggacactga gtcaaaaaac cccacgcgct tggaggcgca 10561 ggatgggaaa agaaggtggc gaccttcccc acccttcaat ctggggcctg aactggagat 10621 cagctgtgga tctccagaag agggactagt ggttagagga gaccccccgg aaaacgcaaa 10681 acagcatat

Public Health England has released a full 2016 Zika sequence from United Kingdom ex-Guadeloupe traveler.

LOCUS KX447517 10654 bp RNA linear VRL 14-AUG-2016 DEFINITION Zika virus isolate 1_0038_PF polyprotein gene, complete cds. ACCESSION KX447517 VERSION KX447517.1 GI:1041521226 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Zika virus outbreak in French Polynesia, 2013-2014 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10654) AUTHORS Nougairede,A., Bouazza,N., Piorkowski,G., Baronti,C., Musso,D. and De Lamballerie,X. TITLE Direct Submission JOURNAL Submitted (28-JUN-2016) Umr190, Aix Marseille Universite, 27 Bd Jean Moulin, Marseille 13005, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10654 /organism="Zika virus" /mol_type="genomic RNA" /isolate="1_0038_PF" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="Jan-2014" /note="Vero cells; one passage; genotype: Asian" CDS 85..10356 /codon_start=1 /product="polyprotein" /protein_id="ANO46309.1" /db_xref="GI:1041521227" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEAALGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQTLIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 actgcgacag ttcgagtttg aagcgaaagc tagcaacagt atcaacaggt tttattttgg 61 atttggaaac gagagtttct ggtcatgaaa aacccaaaaa agaaatccgg aggattccgg 121 attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc cctttggggg cttgaagagg 181 ctgccagccg gacttctgct gggtcatggg cccatcagga tggtcttggc gattctagcc 241 tttttgagat tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg 301 gggaaaaaag aggctatgga aataataaag aagttcaaga aagatctggc tgccatgctg 361 agaataatca atgccaggaa ggagaagaag agacgaggcg cagatactag tgtcggaatt 421 gttggcctcc tgctgaccac agctatggca gcggaggtca ctagacgtgg gagtgcatac 481 tatatgtact tggacagaaa cgatgctggg gaggccatat cttttccaac cacattgggg 541 atgaataagt gttatataca gatcatggat cttggacaca tgtgcgatgc caccatgagc 601 tatgaatgcc ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaat 661 acgacgtcaa cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga 721 tctagaagag ctgtgacgct cccctcccat tccactagga agctgcaaac gcggtcgcaa 781 acctggttgg aatcaagaga atacacaaag cacttgatta gagtcgaaaa ttggatattc 841 aggaaccctg gcttcgcgtt agcagcagct gccatcgctt ggcttttggg aagctcaacg 901 agccaaaaag tcatatactt ggtcatgata ctgctgattg ccccggcata cagcatcagg 961 tgcataggag tcagcaatag ggactttgtg gaaggtatgt caggtgggac ttgggttgat 1021 gttgtcttgg aacatggagg ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac 1081 atagagctgg ttacaacaac agtcagcaac atggcggagg taagatccta ctgctatgag 1141 gcatcaatat cggacatggc ttcggacagc cgctgcccaa cacaaggtga agcctacctt 1201 gacaagcaat cagacactca atatgtctgc aaaagaacgt tagtggacag aggctgggga 1261 aatggatgtg gactttttgg caaagggagc ctggtgacat gcgctaagtt tgcatgctcc 1321 aagaaaatga ccgggaagag catccagcca gagaatctgg agtaccggat aatgctgtca 1381 gttcatggct cccagcacag tgggatgatc gttaatgaca caggacatga aactgatgag 1441 aatagagcga aggttgagat aacgcccaat tcaccaagag ccgaagccgc cctggggggt 1501 tttggaagcc taggacttga ttgtgaaccg aggacaggcc ttgacttttc agatttgtat 1561 tacttgacta tgaataacaa gcactggttg gttcacaagg agtggttcca cgacattcca 1621 ttaccttggc acgctggggc agacaccgga actccacact ggaacaacaa agaagcactg 1681 gtagagttca aggacgcaca tgccaaaagg caaactgtcg tggttctagg gagtcaagaa 1741 ggagcagttc acacggccct tgctggagct ctggaggctg agatggatgg tgcaaaggga 1801 aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc 1861 gtgtcatact ccttgtgtac tgcagcgttc acattcacca agatcccggc tgaaacactg 1921 cacgggacag tcacagtgga ggtacagtac gcagggacag atggaccttg caaggttcca 1981 gctcagatgg cggtggacat gcaaactctg accccagttg ggaggttgat aaccgctaac 2041 cctgtaatca ctgaaagcac tgagaactct aagatgatgc tggaacttga tccaccattt 2101 ggggactctt acattgtcat aggagtcggg gagaagaaga tcacccacca ctggcacagg 2161 agtggcagca ccattggaaa agcatttgaa gccactgtga gaggtgccaa gagaatggca 2221 gtcttgggag acacagcctg ggactttgga tcagttggag gcgctctcaa ctcattgggc 2281 aagggcatcc atcaaatttt tggagcagct ttcaaatcat tgtttggagg aatgtcctgg 2341 ttctcacaaa ctctcattgg aacgttgctg atgtggttgg gtctgaacac aaagaatgga 2401 tctatttccc ttatgtgctt ggccttaggg ggagtgttga tcttcttatc cacagccgtc 2461 tctgctgatg tggggtgctc ggtggacttc tcaaagaagg agacgagatg cggtacaggg 2521 gtgttcgtct ataacgacgt tgaagcctgg agggacaggt acaagtacca tcctgactcc 2581 ccccgtagat tggcagcagc agtcaagcaa gcctgggaag atggtatctg tgggatctcc 2641 tctgtttcaa gaatggaaaa catcatgtgg agatcagtag aaggggagct caacgcaatc 2701 ctggaagaga atggagttca actgacggtc gttgtgggat ctgtaaaaaa ccccatgtgg 2761 agaggtccac agagattgcc cgtgcctgtg aacgagctgc cccacggctg gaaggcttgg 2821 gggaaatcgt acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac 2881 acactgaagg aatgcccact caaacataga gcatggaaca gctttcttgt ggaggatcat 2941 gggttcgggg tatttcacac tagtgtctgg ctcaaggtta gagaagatta ttcattagag 3001 tgtgatccag ccgttattgg aacagctgtt aagggaaagg aggctgtaca cagtgatcta 3061 ggctactgga ttgagagtga gaagaatgac acatggaggc tgaagagggc ccatctgatc 3121 gagatgaaaa catgtgaatg gccaaagtcc cacacattgt ggacagatgg aatagaagag 3181 agtgatctga tcatacccaa gtctttagct gggccactca gccatcacaa taccagagag 3241 ggctacagga cccaaatgaa agggccatgg cacagtgaag agcttgaaat tcggtttgag 3301 gaatgcccag gcactaaggt ccacgtggag gaaacatgcg gaacaagagg accatctctg 3361 agatcaacca ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga gtgcacaatg 3421 cccccactgt cgttccgggc taaagatggc tgttggtatg gaatggagat aaggcccagg 3481 aaagaaccag aaagtaactt agtaaggtca atggtgactg caggatcaac tgatcacatg 3541 gatcacttct cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag 3601 agaatgacca caaagatcat cataagcaca tcaatggcag tgctggtagc tatgatcctg 3661 ggaggatttt caatgagtga cctggctaag cttgcaatct tgatgggtgc caccttcgct 3721 gaaatgaaca ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga 3781 ccagcgttgc tggtatcttt catcttcaga gctaattgga caccccgtga aagcatgctg 3841 ctggccttgg cctcgtgtct tttgcaaact gcgatctccg ccttggaagg cgacctgatg 3901 gttctcatca atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc 3961 actgataaca tcaccttggc aatcctggct gctctgacac cactggcccg gggcacactg 4021 cttgtggcgt ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag 4081 ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg 4141 aggctggtcg accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg 4201 agctggcccc ctagcgaagt actcacagct gttggcctga tatgcgcatt ggctggaggg 4261 ttcgccaagg cagatataga gatggctggg cccatggccg cggtcggtct gctaattgtc 4321 agttacgtgg tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca 4381 tgggaaaaag atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag 4441 agtggtgatt tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag 4501 gtggtcctga tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg 4561 tggtacgtat acgtgaagac tggaaaaagg agtggtgctc tatgggatgt gcctgctccc 4621 aaggaagtaa aaaaggggga gaccacagat ggagtgtaca gagtaatgac tcgtagactg 4681 ctaggttcaa cacaagttgg agtgggagtt atgcaagagg gggtctttca cactatgtgg 4741 cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga 4801 gatgtcaagc aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac 4861 gggcacagcg aggtgcagct cttggccgtg ccccccggag agagagcgag gaacatccag 4921 actctgcccg gaatatttaa gacaaaggat ggggacattg gagcggttgc gctggactac 4981 ccagcaggaa cttcaggatc tccaatccta gacaagtgtg ggagagtgat aggactttat 5041 ggcaatgggg tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca agggaggagg 5101 gaggaagaga ctcctgttga gtgcttcgag ccttcgatgc tgaagaagaa gcagctaact 5161 gtcttagact tgcatcctgg agctgggaaa accaggagag ttcttcctga aatagtccgt 5221 gaagccataa aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct 5281 gaaatggagg aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc 5341 acccattctg gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgtcta 5401 ctacagccaa tcagagtccc caactataat ctgtatatta tggatgaggc ccacttcaca 5461 gatccctcaa gtatagcagc aagaggatac atttcaacaa gggttgagat gggcgaggcg 5521 gctgccatct tcatgaccgc cacgccacca ggaacccgtg acgcatttcc ggactccaac 5581 tcaccaatta tggacaccga agtggaagtc ccagagagag cctggagctc aggctttgat 5641 tgggtgacgg atcattctgg aaaaacagtt tggtttgttc caagcgtgag gaacggcaat 5701 gagatcgcag cttgtctgac aaaggctgga aaacgggtca tacagctcag cagaaagact 5761 tttgagacag agttccagaa aacaaaacat caagagtggg actttgtcgt gacaactgac 5821 atttcagaga tgggcgccaa ctttaaagct gaccgtgtca tagattccag gagatgccta 5881 aagccggtca tacttgatgg cgagagagtc attctggctg gacccatgcc tgtcacacat 5941 gccagcgctg cccagaggag ggggcgcata ggcaggaatc ccaacaaacc tggagatgag 6001 tatctgtatg gaggtgggtg cgcagagact gacgaagacc atgcacactg gcttgaagca 6061 agaatgctcc ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct 6121 gaggccgaca aagtagcagc cattgaggga gagttcaagc ttaggacgga gcaaaggaag 6181 acctttgtgg aactcatgaa aagaggagat cttcctgttt ggctggccta tcaggttgca 6241 tctgccggaa taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc 6301 ataatggaag acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc 6361 aaaccgaggt ggatggacgc cagagtttgt tcagatcatg cggccctgaa gtcattcaag 6421 gagtttgccg ctgggaaaag aggagcggct tttggagtga tggaagccct gggaacactg 6481 ccaggacaca tgacagagag attccaggaa gccattgaca acctcgctgt gctcatgcgg 6541 gcagagactg gaagcaggcc ttacaaagcc gcggcggccc aattgccgga gaccctagag 6601 accattatgc ttttggggtt gctgggaaca gtctcgctgg gaatcttttt cgtcttgatg 6661 aggaacaagg gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg 6721 ctcatgtggc tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgttc 6781 ctattgctgg tggtgctcat acctgagcca gaaaagcaaa gatctcccca ggacaaccaa 6841 atggcaatca tcatcatggt agcagtaggt cttctgggct tgattaccgc caatgaactc 6901 ggatggttgg agagaacaaa gagtgaccta agccatctaa tgggaaggag agaggagggg 6961 gcaaccatag gattctcaat ggacattgac ctgcggccag cctcagcttg ggccatctat 7021 gctgccttga caaccttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac 7081 aactactcct taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg 7141 atgccattct acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa 7201 ttaacacccc tgaccctaat agtggccatc attttgctcg tggcgcacta catgtacttg 7261 atcccagggc tgcaggcagc agctgcgcgt gctgcccaga agagaacggc agctggcatc 7321 atgaagaacc ctgttgtgga tggaatagtg gtgactgaca ttgacacaat gacaattgac 7381 ccccaagtgg agaaaaagat gggacaggtg ctactcatag cagtagccgt ctccagcgcc 7441 atactgtcgc ggaccgcctg ggggtggggg gaggctgggg ccctgatcac agctgcaact 7501 tccactttgt gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg 7561 tgtaacattt ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga 7621 aacgctggct tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg 7681 aaggcccgct tgaaccagat gtcggccctg gagttctact cctacaaaaa gtcaggcatc 7741 accgaggtgt gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc 7801 catgctgtgt cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag 7861 ccctatggaa aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc 7921 accatccgca aagttcaaga agtgaaagga tacacaaaag gaggccctgg tcatgaagaa 7981 cccatgttgg tgcaaagcta tgggtggaac atagtccgtc ttaagagtgg ggtggacgtc 8041 tttcatatgg cggctgagcc gtgtgacacg ttgctgtgtg acataggtga gtcatcatct 8101 agtcctgaag tggaagaagc acggacgctc agagtcctct ccatggtggg ggattggctt 8161 gaaaaaagac caggagcctt ttgtataaaa gtgttgtgcc catacaccag cactatgatg 8221 gaaaccctgg agcgactgca gcgtaggtat gggggaggac tggtcagagt gccactctcc 8281 cgcaactcta cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt 8341 gtgtccacca cgagccagct cctcttgggg cgcatggacg ggcccaggag gccagtgaaa 8401 tatgaggagg atgtgaatct cggctctggc acgcgggctg tggtaagctg cgctgaagct 8461 cccaacatga agatcattgg taaccgcatt gaaaggatcc gcagtgagca cgcggaaacg 8521 tggttctttg acgagaacca cccatatagg acatgggctt accatggaag ctatgaggcc 8581 cccacacaag ggtcagcgtc ctctctaata aacggggttg tcaggctcct gtcaaaaccc 8641 tgggatgtgg tgactggagt cacaggaata gccatgaccg acaccacacc gtatggtcag 8701 caaagagttt tcaaggaaaa agtggacact agggtgccag acccccaaga aggcactcgt 8761 caggttatga gcatggtctc ttcctggttg tggaaagagc taggcaaaca caaacggcca 8821 cgagtctgta ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc attaggggca 8881 atatttgaag aggaaaaaga gtggaagact gcagtggaag ctgtgaacga tccaaggttc 8941 tgggctctag tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg 9001 tacaacatga tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caagggcagc 9061 cgcgccatct ggtatatgtg gctaggggct agatttctag agttcgaagc ccttggattc 9121 ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga agggctggga 9181 ttacaaagac tcggatatgt cctagaagag atgagtcgca taccaggagg aaggatgtat 9241 gcagatgaca ctgctggctg ggacacccgc atcagcaggt ttgatctgga gaatgaagct 9301 ctaatcacca accaaatgga gaaagggcac agggccttgg cgttggccat aatcaagtac 9361 acataccaaa acaaagtggt aaaggtcctt agaccagctg aaaaagggaa gacagttatg 9421 gacattattt cgagacaaga ccaaaggggg agcggacaag ttgtcactta cgctcttaac 9481 acatttacca acctagtggt gcaactcatt cggaatatgg aggctgagga agttctagag 9541 atgcaagact tgtggctgct gcggaggtca gagaaagtga ccaactggtt gcagagcaac 9601 ggatgggata ggctcaaacg aatggcagtc agtggagatg attgcgttgt gaagccaatt 9661 gatgataggt ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt taggaaggac 9721 acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc gttttgctcc 9781 caccacttca acaagctcca tctcaaggac gggaggtcca ttgtggttcc ctgccgccac 9841 caagatgaac tgattggccg ggcccgcgtc tctccagggg cgggatggag catccgggag 9901 actgcttgcc tagcaaaatc atatgcgcaa atgtggcagc tcctttattt ccacagaagg 9961 gacctccgac tgatggccaa tgccatttgt tcatctgtgc cagttgactg ggttccaact 10021 gggagaacta cctggtcaat ccatggaaag ggagaatgga tgaccactga agacatgctt 10081 gtggtgtgga acagagtgtg gattgaggag aacgaccaca tggaagacaa gaccccagtt 10141 acgaaatgga cagacattcc ctatttggga aaaagggaag acttgtggtg tggatctctc 10201 atagggcaca gaccgcgcac cacctgggct gagaacatta aaaacacagt caacatggtg 10261 cgcaggatca taggtgatga agaaaagtac atggactacc tatccaccca agttcgctac 10321 ttgggtgaag aagggtctac acctggagtg ctgtaagcac caatcttagt gttgtcaggc 10381 ctgctagtca gccacagctt ggggaaagct gtgcagcctg tgaccccccc aggagaagct 10441 gggaaaccaa gcctatagtc aggccgagaa cgccatggca cggaagaagc catgctgcct 10501 gtgagcccct cagaggacac tgagtcaaaa aaccccacgc gcttggaggc gcaggatggg 10561 aaaagaaggt ggcgaccttc cccacccttc aatctggggc ctgaactgga gatcagctgt 10621 ggatctccag aagagggact agtggttaga ggag

Zika virus isolate 1_0038_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447514.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447513.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447510.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 325 325 100% 1e-85 100% KX447509.1

Aix Marseille Universite has released 9 full Zika sequences from the 2013/2014 Zika outbreak in French Polynesia.

week conf discard untested total weekly increase 31 24 101 242 367 23 30 22 97 225 344 24 29 21 92 207 320 23 28 21 80 196 297 41 27 21 75 160 256 62 26 18 64 112 194 13 25 13 56 112 181 17 24 11 51 102 164 27 23 6 50 81 137 19 22 6 43 69 118 23 21 6 41 48 95 7 20 5 26 57 88 7 19 5 26 50 81 9 18 5 24 43 72 14 17 5 21 32 58 8 16 4 20 26 50 6 15 4 18 22 44 11 14 2 15 16 33 0

intensified surveillance of microcephaly Review 12 August 2016 Among the epidemiological weeks 01 to 31, 2016 have been confirmed twenty-four (24) cases associated with microcephaly Zika virus, 101 cases were dismissed and 242 cases are in study. http://www.ins.gov.co/boletin-epidemiologico/Boletn Epidemiolgico/2016 Boletin epidemiologico semana 31.pdf

Texas Resident Infected with Zika Posted: Aug 15, 2016 10:58 PM EDTUpdated: Aug 15, 2016 10:58 PM EDT EL PASO – A Texas man, who was infected with Zika in Florida, is back in El Paso. The Texas Department of State Health Services said it’s the first Texas case to be linked to travel within the continental U.S. The man traveled nearly 2,000 miles to the Zika hot zone in Florida. So far 30 people have been infected with the virus in a Miami neighborhood. The El Paso man unknowingly was bit by an infected mosquito while visiting the Florida city. Health officials said when he returned to El Paso the man noticed he developed a rash. His blood was drawn and test results this weekend showed he tested positive for Zika. El Paso health officials said there is some good news. Public Health Director Robert Resendes said, “One of the nice things about Zika is it doesn't stay around in your blood too long, so this gentleman is no longer infectious. The virus lasts in our bloodstream about one week, and then it's gone. So if he's getting bitten by mosquitoes now, it's been over a week. He's not spreading any disease neither are the mosquitoes, so this is a good thing." The man is said to be doing much better now. Amid the concerns over Zika, Texas no longer requires pregnant women on Medicaid to get a prescription before receiving free mosquito repellent. Expecting mothers and women between the ages of 10 and 45 can receive up to two cans of repellent a month through October. http://www.krgv.com/story/32766052/texas-resident-infected-with-zika

Texas resident is infected with Zika after Miami trip August 16, 2016 A person in Texas has contracted Zika after traveling to a part of Miami where local mosquitoes are spreading the virus, which can cause birth defects, officials said Monday. "This is the first Texas case to be linked to travel within the continental United States," said the Texas Department of State Health Services. "Health officials linked this case to Miami travel after closely evaluating travel dates, symptom onset date and known local transmission of Zika virus in Miami." The unidentified person had "recently traveled to an area of Miami with local Zika transmission" and "has tested positive for the virus." Upon returning to Texas, the traveler "sought testing after becoming ill." Florida has tallied 30 cases of locally transmitted Zika since July, marking the first cases of the virus spreading locally on US soil. "We still believe local transmissions are only occurring in an area that is less than one square mile in Wynwood"—a neighborhood north of downtown Miami—Florida Governor Rick Scott said on Monday. The Florida Department of Health is nevertheless also investigating four areas in Miami-Dade and Palm Beach counties where local transmissions of Zika may have occurred. Zika, which can be transmitted via sexual contact or mosquito bites, has spread throughout Latin America and the Caribbean region since 2015. The virus is blamed for a surge in cases of babies born with the brain and skull defect known as microcephaly. Suspected Zika-related birth defects have been reported so far in 15 countries or territories, according to the World Health Organization. As many as four in five of those infected may notice no symptoms at all. Those who do often report fever, rash and body pain. Until now Texas has now only reported travel-associated cases of Zika, and said it would also classify the Miami case as linked to travel. 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From Press Conference: This is a gentleman, who was healthy when he left El Paso, traveled to Florida. Happen to go to the area where there has been some transmission of Zika by mosquitos. He came home affected, sick, sought out treatment, the testing, the blood tests, that’s necessary, the blood tests, went to the state lab in Austin. And we found out this weekend that we have our first positive case. The patient is doing great, you know he had, the fever, the rash and after about a week he was fine. He traveled, in the greater Miami in the last week in July. He returned to El Paso on August 1st. August 2nd he began having the symptoms I discussed. Had a blood test on August, 5th. Then we got the results this weekend and by the time we got the results the disease was behind him and he longer had the virus in his blood. He isolated himself when he had symptoms, to prevent mosquitos from picking it up from him.

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Texas resident tests positive for Zika after travel to Miami; case is state's first linked to trip within U.S. Facebook Twitter Email 0Comments Print John Moore/Getty Images A city environmental health worker displays literature to be distributed to the public in McAllen. By Claire Z. Cardona Follow @clairezcardona [email protected] Breaking News Producer Published: 15 August 2016 06:09 PM Updated: 15 August 2016 06:35 PM A Texas resident who recently traveled to Miami has tested positive for Zika in what is considered the first Texas case linked to a trip within the U.S. The resident, who lives in El Paso County, recently returned from an area of Miami where local transmission by U.S. mosquitoes has occurred. It is also the first Zika case for the county, which has found no other evidence of the virus or local transmission, according to the Texas Department of State Health Services. There have been 108 cases of travel-related Zika in Texas, including three pregnant women and one person who had sexual contact with a traveler, health officials said. None of the cases have been a result of the disease transmitted by mosquitoes in Texas. The state has been on high alert over the virus and is bracing itself for the possibility of a Texas-borne case. Health officials announced Monday that they're dropping the need for some expecting mothers and women between 10 and 45 years old to get a prescription before receiving two free cans mosquito repellent. Texas is the first state to issue a standing order for mosquito repellent, said Charles Smith, executive commission of Texas Health and Human Services. Eligible women on Medicaid can now go directly to a pharmacist to pick the repellent up through October, Smith said. Dallas County reported its 25th case of Zika virus Friday. The patient, a 31-year-old Richardson resident, was infected during a recent trip to Belize. Other cases in the county have included residents from DeSoto, Irving and Dallas who traveled abroad to places such as El Salvador, Colombia, Puerto Rico, Honduras and Jamaica. Last week, state health officials confirmed that a baby girl who died in Harris County had microcephaly linked to the virus. The case was the first Zika-related death reported in Texas. Her mother was infected with the Zika virus while traveling in Latin America and passed the virus to the baby in the womb. Another Harris County infant was the first confirmed case of microcephaly linked to Zika in the state. The most common symptoms of Zika are fever, rash, joint pain and conjunctivitis. Illness is usually mild with symptoms that last for several days to a week. More details about prevention and the virus are available at the county website,TexasZika.org and CDC.gov. http://www.dallasnews.com/business/health-care/20160815-texas-resident-tests-positive-for-zika-after-travel-to-miami-case-is-state-s-first-linked-to-trip-within-u.s..ece