niman

LOCUS KX212103 2809 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds. ACCESSION KX212103 VERSION KX212103.1 GI:1029979765 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2809) AUTHORS Garcez,P., Nascimento,J.M., Vasconcelos,J.M., da Costa,R.M., Delvecchio,R., Trindade,P., Loiola,E.C., Higa,L.M., Cassoli,J., Vitoria,G., Sequeira,P., Sochacki,J., Aguiar,R., Fuzii,H.T., de Filippis,A.M.B., Vianez,J.L.S.G. Jr., Martins-de-Souza,D., Tanuri,A. and Rehen,S.K. TITLE Zika virus alters molecular fingerprinting in neural progenitors JOURNAL Unpublished REFERENCE 2 (bases 1 to 2809) AUTHORS Vasconcelos,J.M., Sequeira,P.C., Higa,L.M., Lemos,P.S., de Oliveira,R.S., Silva,S.P., de Filippis,A.M.B. and Tanuri,A. TITLE Direct Submission JOURNAL Submitted (03-MAY-2016) Center for Technological Innovation, Evandro Chagas Institute, BR-316 KM 7, Ananindeua, PA 67030-000, Brazil FEATURES Location/Qualifiers source 1..2809 /organism="Zika virus" /mol_type="genomic RNA" /isolate="BRZIKV_AB_ES" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="01-Sep-2015" CDS <1..>2809 /codon_start=1 /product="polyprotein" /protein_id="ANF29038.1" /db_xref="GI:1029979766" /translation="IVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWD FGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMC LALGGVLIFLSTAVSADVGCSVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRL AAAVKQAWEDGICGISSVSRMENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRG PQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDH GFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAVHSDLGYWIESEKNDTWRLKRAH LIEMKTCEWPKSHTLWTDGIEESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHGEELE IRFEECPGTKVHVEETCGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYG MEIRPRKEPESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSM AVLVAMILGGFSMSDLAKLAILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFR ANWTPRESMLLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAI LAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPI NVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVV SGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVV LMTICGMNPIAIPFAAGAWYVYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRL LGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAA WDGHSEVQLLAVPPGERARNIQ" ORIGIN 1 attgtcatag gagtcgggga gaagaagatc acccaccact ggcacaggag tggcagcacc 61 attggaaaag catttgaagc cactgtgaga ggtgccaaga gaatggcagt cttgggagac 121 acggcctggg actttggatc agttggaggc gctctcaact cattgggcaa gggcatccat 181 caaatttttg gagcagcttt caaatcattg tttggaggaa tgtcctggtt ctcacaaatt 241 ctcattggaa cgttgctgat gtggttgggt ctgaacacaa agaatggatc tatttccctt 301 atgtgcttgg ccttaggggg agtgttgatc ttcttatcca cagccgtctc tgctgatgtg 361 gggtgctcgg tggacttctc aaagaaggag acgagatgcg gtacaggggt gttcgtctat 421 aacgacgttg aagcctggag ggacaggtac aagtaccatc ctgactcccc ccgtagattg 481 gcagcagcag tcaagcaagc ctgggaagat ggtatctgcg ggatctcctc tgtttcaaga 541 atggaaaaca tcatgtggag atcagtagaa ggggagctca acgcaatcct ggaagagaat 601 ggagttcaac tgacggtcgt tgtgggatct gtaaaaaacc ccatgtggag aggtccacag 661 agattgcccg tgcctgtgaa cgagctgccc cacggctgga aggcttgggg gaaatcgtac 721 ttcgtcagag cagcaaagac aaataacagc tttgtcgtgg atggtgacac actgaaggaa 781 tgcccactca aacatagagc atggaacagc tttcttgtgg aggatcatgg gttcggggta 841 tttcacacta gtgtctggct caaggttaga gaagattatt cattagagtg tgatccagcc 901 gttattggga cagctgttaa gggaagggag gctgtacaca gtgatctagg ctactggatt 961 gagagtgaga agaatgacac atggaggctg aagagggccc atctgatcga gatgaaaaca 1021 tgtgaatggc caaagtccca cacattgtgg acagatggaa tagaagagag tgatctgatc 1081 atacccaagt ctttagctgg gccactcagc catcacaata ccagagaggg ctacaggacc 1141 caaatgaaag ggccatggca cggtgaagag cttgaaattc ggtttgagga atgcccaggc 1201 actaaggtcc acgtggagga aacatgtgga acaagaggac catctctgag atcaaccact 1261 gcaagcggaa gggtgatcga ggaatggtgc tgcagggagt gcacaatgcc cccactgtcg 1321 ttccgggcta aagatggctg ttggtatgga atggagataa ggcccaggaa agaaccagaa 1381 agcaacttag taaggtcaat ggtgactgca ggatcaactg atcacatgga tcacttctcc 1441 cttggagtgc ttgtgattct gctcatggtg caggaagggc tgaagaagag aatgaccaca 1501 aagatcatca taagcacatc aatggcagtg ctggtagcta tgatcctggg aggattttca 1561 atgagtgacc tggctaagct tgcaattttg atgggtgcca ccttcgcgga aatgaacact 1621 ggaggagatg tagctcatct ggcgctgata gcggcattca aagtcagacc agcgttgctg 1681 gtatctttca tcttcagagc taattggaca ccccgtgaaa gcatgctgct ggccttggcc 1741 tcgtgtcttt tgcaaactgc gatctccgcc ttggaaggcg acctgatggt tctcatcaat 1801 ggttttgctt tggcctggtt ggcaatacga gcgatggttg ttccacgcac tgataacatc 1861 accttggcaa tcctggctgc tctgacacca ctggcccggg gcacactgct tgtggcgtgg 1921 agagcaggcc ttgctacttg cggggggttt atgctcctct ctctgaaggg aaaaggcagt 1981 gtgaagaaga acttaccatt tgtcatggcc ctgggactaa ccgctgtgag gctggtcgac 2041 cccatcaacg tggtgggact gctgttgctc acaaggagtg ggaagcggag ctggccccct 2101 agcgaagtac tcacagctgt tggcctgata tgcgcattgg ctggagggtt cgccaaggca 2161 gatatagaga tggctgggcc catggccgcg gtcggtctgc taattgtcag ttacgtggtc 2221 tcaggaaaga gcgtggacat gtacattgaa agagcaggtg acatcacatg ggaaaaagat 2281 gcggaagtca ctggaaacag tccccggctc gatgtggcgc tagatgagag tggtgatttc 2341 tccctggtgg aggatgacgg tccccccatg agagagatca tactcaaggt ggtcctgatg 2401 accatctgtg gcatgaaccc aatagccata ccctttgcag ctggagcgtg gtacgtatac 2461 gtgaagactg gaaaaaggag tggtgctcta tgggatgtgc ctgctcccaa ggaagtaaaa 2521 aagggggaga ccacagatgg agtgtacaga gtaatgactc gtagactgct aggttcaaca 2581 caagttggag tgggagttat gcaagagggg gtctttcaca ctatgtggca cgtcacaaaa 2641 ggatccgcgc tgagaagcgg tgaagggaga cttgatccat actggggaga tgtcaagcag 2701 gatctggtgt catactgtgg tccatggaag ctagatgccg cctgggacgg gcacagcgag 2761 gtgcagctct tggccgtgcc ccccggagag agagcgagga acatccaga

Evandro Chagas Institute has released a partial Zika sequence under title "Zika virus alters molecular fingerprinting in neural progenitors"

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June 3, 2016 DEPARTMENT OF HEALTH DAILY ZIKA UPDATE: NO NEW CASES TODAY Contact:Communications [email protected](850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the Florida Department of Health will issue a Zika virus update each week day at 2 p.m. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. There are no new cases today. Of the cases confirmed in Florida, five cases are still exhibiting symptoms. According to CDC, symptoms associated with the Zika virus last between seven to 10 days. CDC recommends that women who are pregnant or thinking of becoming pregnant postpone travel to Zika affected areas. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms since January. The total number of pregnant women who have been monitored is 38, with 9 having met the previous CDC case definition. County Number of Cases (all travel related) Alachua 4 Brevard 3 Broward 19 Clay 2 Collier 2 Hillsborough 3 Lee 5 Martin 1 Miami-Dade 50 Orange 10 Osceola 5 Palm Beach 7 Pasco 1 Pinellas 4 Polk 3 Santa Rosa 1 Seminole 3 St. Johns 2 Volusia 2 Total cases not involving pregnant women 127 Cases involving pregnant women regardless of symptoms* 38 *Counties of pregnant women will not be shared. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 1,948 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. All cases are travel-associated. There have been no locally-acquired cases of Zika in Florida. For more information on the Zika virus, click here. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. More Information on DOH action on Zika: On Feb. 3, Governor Scott directed the State Surgeon General to issue a Declaration of Public Health Emergency for the counties of residents with travel-associated cases of Zika.There have been 19 counties included in the declaration– Alachua, Brevard, Broward, Clay, Collier, Hillsborough, Lee, Martin, Miami-Dade, Orange, Osceola, Palm Beach, Pasco, Pinellas, Polk, Santa Rosa, Seminole, St. Johns and Volusia – and will be updated as needed.DOH encourages Florida residents and visitors to protect themselves from all mosquito-borne illnesses by draining standing water; covering their skin with repellent and clothing; and covering windows with screens.DOH has a robust mosquito-borne illness surveillance system and is working with CDC, the Florida Department of Agriculture and Consumer Services and local county mosquito control boards to ensure that the proper precautions are being taken to protect Florida residents and visitors.On April 6, Governor Rick Scott and Interim State Surgeon General Dr. Celeste Philip hosted a conference call with Florida Mosquito Control Districts to discuss ongoing preparations to fight the possible spread of the Zika virus in Florida. There were 74 attendees on the call.On May 11, Governor Scott met with federal leaders on the importance of preparing for Zika as we would a hurricane. Governor Scott requested 5,000 Zika preparedness kits from HHS Secretary Sylvia Burwell as well as a plan from FEMA on how resources will be allocated to states in the event an emergency is declared.On June 1, Governor Scott requested for President Obama to provide preparedness items needed in order to increase Florida’s capacity to be ready when Zika becomes mosquito-borne in our state.Florida currently has the capacity to test 6,113 people for active Zika virus and 1,812 for Zika antibodies.Federal Guidance on Zika: According to CDC, Zika illness is generally mild with a rash, fever and joint pain. CDC researchers have concluded that Zika virus is a cause of microcephaly and other birth defects.The FDA released guidance regarding donor screening, deferral and product management to reduce the risk of transfusion-transmission of Zika virus. Additional information is available on the FDA website here.CDC has put out guidance related to the sexual transmission of the Zika virus. This includes CDC recommendation that if you have traveled to a country with local transmission of Zika you should abstain from unprotected sex.Based on CDC guidance released, DOH will now report pregnant women with evidence of Zika virus regardless of symptoms. Prior to new guidance, CDC guidance was only to report cases of Zika if the pregnant women was symptomatic.For more information on Zika virus, click here. About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov. http://www.floridahealth.gov/newsroom/2016/06/060316-zika-update.html

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CDPH Weekly Update on Number of Zika Cases in California June 3, 2016 The following table provides the number of travel-associated cases of Zika in California residents in 2015 and 2016. CDPH is following CDC testing guidelines. This table is updated every Friday. As of June 3, 2016, there have been 52 travel-associated cases of Zika in California.  Total cases: 52  Cumulative number of cases in pregnant women: 13*  Cumulative number of cases due to sexual transmission: 1 Cases of Zika in California, 2015-2016§ (as of June 3, 2016) County Travel-associated cases¥ Locally acquired cases† Alameda 4 0 Contra Costa 4 0 Los Angeles 14 0 Marin 1 0 Napa 1 0 Orange 2 0 San Bernardino 3 0 San Diego 12** 0 San Francisco 2 0 San Joaquin 2 0 San Mateo 2 0 Santa Clara 1 0 Solano 1 0 Sonoma 1 0 Yolo 2 0 Total 52 0 *Local Health Departments and CDPH are monitoring all pregnant women and their infants §Total number of cases includes laboratory-confirmed and probable cases as defined by the CSTE Position Statement ¥ Travelers returning from affected areas or their sexual contacts † Presumed local mosquito-borne transmission **Includes one non-resident https://www.cdph.ca.gov/HealthInfo/discond/Documents/TravelAssociatedCasesofZikaVirusinCA.pdf

Defining the syndrome associated with congenital Zika virus infectionAnthony Costello a, Tarun Dua b, Pablo Duran c, Metin Gülmezoglu d, Olufemi T Oladapo d, William Perea e, João Pires f, Pilar Ramon-Pardo g, Nigel Rollins a & Shekhar Saxena ba. Department of Maternal, Newborn, Child and Adolescent Health, World Health Organization, Geneva, Switzerland. b. Department of Mental Health and Substance Abuse, World Health Organization, 20 Avenue Appia, 1211 Geneva 27, Switzerland. c. Center For Perinatology, Women and Reproductive Health, Pan American Health Organization/World Health Organization, Montevideo, Uruguay. d. Department of Reproductive Health and Research, World Health Organization, Geneva, Switzerland. e. Department of Pandemic and Epidemic Diseases, World Health Organization, Geneva, Switzerland. f. Division of Communicable Diseases and Health Security, World Health Organization Regional Office for Europe, Copenhagen, Denmark. g. Department of Communicable Diseases and Health Analysis, Pan American Health Organization/ World Health Organization, Washington, USA. Correspondence to Tarun Dua (email: [email protected]). Bulletin of the World Health Organization 2016;94:406-406A. doi:http://dx.doi.org/10.2471/BLT.16.176990 Zika virus infection in humans is usually mild or asymptomatic. However, some babies born to women infected with Zika virus have severe neurological sequelae. An unusual cluster of cases of congenital microcephaly and other neurological disorders in the WHO Region of the Americas, led to the declaration of a public health emergency of international concern by the World Health Organization (WHO) on 1 February 2016. By 5 May 2016, reports of newborns or fetuses with microcephaly or other malformations – presumably associated with Zika virus infection – have been described in the following countries and territories: Brazil (1271 cases); Cabo Verde (3 cases); Colombia (7 cases); French Polynesia (8 cases); Martinique (2 cases) and Panama (4 cases). Additional cases were also reported in Slovenia and the United States of America, in which the mothers had histories of travel to Brazil during their pregnancies.1 Zika virus is an intensely neurotropic virus that particularly targets neural progenitor cells but also – to a lesser extent – neuronal cells in all stages of maturity. Viral cerebritis can disrupt cerebral embryogenesis and result in microcephaly and other neurological abnormalities.2 Zika virus has been isolated from the brains and cerebrospinal fluid of neonates born with congenital microcephaly and identified in the placental tissue of mothers who had had clinical symptoms consistent with Zika virus infection during their pregnancies.3–5 The spatiotemporal association of cases of microcephaly with the Zika virus outbreak and the evidence emerging from case reports and epidemiologic studies, has led to a strong scientific consensus that Zika virus is implicated in congenital abnormalities.6,7 Existing evidence and unpublished data shared with WHO highlight the wider range of congenital abnormalities probably associated with the acquisition of Zika virus infection in utero. In addition to microcephaly, other manifestations include craniofacial disproportion, spasticity, seizures, irritability and brainstem dysfunction including feeding difficulties, ocular abnormalities and findings on neuroimaging such as calcifications, cortical disorders and ventriculomegaly.3–6,8–10 Similar to other infections acquired in utero, cases range in severity; some babies have been reported to have neurological abnormalities with a normal head circumference. Preliminary data from Colombia and Panama also suggest that the genitourinary, cardiac and digestive systems can be affected (Pilar Ramon-Pardo, unpublished data). The range of abnormalities seen and the likely causal relationship with Zika virus infection suggest the presence of a new congenital syndrome. WHO has set in place a process for defining the spectrum of this syndrome. The process focuses on mapping and analysing the clinical manifestations encompassing the neurological, hearing, visual and other abnormalities, and neuroimaging findings. WHO will need good antenatal and postnatal histories and follow-up data, sound laboratory results, exclusion of other etiologies and analysis of imaging findings to properly delineate this syndrome. The scope of the syndrome will expand as further information and longer follow-up of affected children become available. The surveillance system that was established as part of the epidemic response to the outbreak initially called only for the reporting of microcephaly cases. This surveillance guidance has been expanded to include a spectrum of congenital malformations that could be associated with intrauterine Zika virus infection.11 Effective sharing of data is needed to define this syndrome. A few reports have described a wide range of abnormalities,3–6,8–10 but most data related to congenital manifestations of Zika infection remain unpublished. Global health organizations and research funders have committed to sharing data and results relevant to the Zika epidemic as openly as possible.12 Further analysis of data from cohorts of pregnant women with Zika virus infection are needed to understand all outcomes of Zika virus infection in pregnancy. Thirty-seven countries and territories in the Region of the Americas now report mosquito-borne transmission of Zika virus and risk of sexual transmission. With such spread, it is possible that many thousands of infants will incur moderate to severe neurological disabilities. Therefore, routine surveillance systems and research protocols need to include a larger population than simply children with microcephaly. The health system response, including psychosocial services for women, babies and affected families will need to be fully resourced. The Zika virus public health emergency is distinct because of its long-term health consequences and social impact. A coordinated approach to data sharing, surveillance and research is needed. WHO has thus started coordinating efforts to define the congenital Zika virus syndrome and issues an open invitation to all partners to join in this effort. AcknowledgementsWe thank the guideline development group members for the management of Zika virus associated complications, including Melania Amorim, Adriana Melo, Marianne Besnard, Jose Guilherme Cecatti, Gustavo Malinger and Vanessa van Der Linden who shared their unpublished data during the meeting. ReferencesZika situation report (5 May 2016). Geneva: World Health Organization; 2016. Available from: http://www.who.int/emergencies/zika-virus/situation-report/5-may-2016/en/ [cited 2016 May 10].Tang H, Hammack C, Ogden SC, Wen Z, Qian X, Li Y, et al. Zika virus infects human cortical neural progenitors and attenuates their growth. Cell Stem Cell. 2016 May 5;18(5):587–90. http://dx.doi.org/10.1016/j.stem.2016.02.016 pmid:26952870Driggers RW, Ho CY, Korhonen EM, Kuivanen S, Jääskeläinen AJ, Smura T, et al. Zika virus infection with prolonged maternal viremia and fetal brain abnormalities. N Engl J Med. 2016 Mar 30;NEJMoa1601824.http://dx.doi.org/10.1056/NEJMoa1601824 pmid: 27028667Brasil P, Pereira JP Jr, Raja Gabaglia C, Damasceno L, Wakimoto M, Ribeiro Nogueira RM, et al. Zika virus infection in pregnant women in Rio de Janeiro - preliminary report. N Engl J Med. 2016 Mar 4;NEJMoa1602412.http://dx.doi.org/10.1056/NEJMoa1602412 pmid: 26943629Mlakar J, Korva M, Tul N, Popović M, Poljšak-Prijatelj M, Mraz J, et al. Zika virus associated with microcephaly. N Engl J Med. 2016 Mar 10;374(10):951–8.http://dx.doi.org/10.1056/NEJMoa1600651 pmid: 26862926Cauchemez S, Besnard M, Bompard P, Dub T, Guillemette-Artur P, Eyrolle-Guignot D, et al. Association between Zika virus and microcephaly in French Polynesia, 2013-15: a retrospective study. Lancet. 2016 Mar 15;S0140-6736(16)00651-6. pmid: 26993883SA Rasmussen, Jamieson DJ, Honein MA, Petersen LR. Zika virus and birth defects - reviewing the evidence for causality. N Engl J Med. 2016 Apr 13.Besnard M, Eyrolle-Guignot D, Guillemette-Artur P, Lastère S, Bost-Bezeaud F, Marcelis L, et al. Congenital cerebral malformations and dysfunction in fetuses and newborns following the 2013 to 2014 Zika virus epidemic in French Polynesia. Euro Surveill. 2016 Mar 31;21(13):30181.http://dx.doi.org/10.2807/1560-7917.ES.2016.21.13.30181 pmid: 27063794de Paula Freitas B, de Oliveira Dias JR, Prazeres J, Sacramento GA, Ko AI, Maia M, et al. Ocular findings in infants with microcephaly associated with presumed Zika virus congenital infection in Salvador, Brazil. JAMA Ophthalmol. 2016 Feb 9; http://dx.doi.org/10.1001/jamaophthalmol.2016.0267 pmid:26865554Miranda-Filho DB, Martelli CM, Ximenes RA, Araújo TV, Rocha MA, Ramos RC, et al. Initial Description of the presumed congenital Zika syndrome. Am J Public Health. 2016 Apr;106(4):598–600. http://dx.doi.org/10.2105/AJPH.2016.303115pmid: 26959258Case definitions. Washington: Regional Office in the Americas/World Health Organization; 2016. Available from: http://www.paho.org/hq/index.php?option=com_content&view=article&id=11117&Itemid=41532&lang=en [cited 2016 May 10].Dye C, Bartolomeos K, Moorthy V, Kieny MP. Data sharing in public health emergencies: a call to researchers. Bull World Health Organ. 2016 Mar 1;94(3):158. http://dx.doi.org/10.2471/BLT.16.170860 pmid: 26966322http://www.who.int/bulletin/volumes/94/6/16-176990/en/

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Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49654965100%0.0100%KU758876.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49424942100%0.099%KU937936.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49384938100%0.099%KU758873.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49384938100%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49384938100%0.099%KU758870.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49334933100%0.099%KU758877.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49334933100%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49294929100%0.099%KU758872.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49294929100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49294929100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49294929100%0.099%KU365778.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49244924100%0.099%KX262887.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49244924100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49244924100%0.099%KU365777.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49204920100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49204920100%0.099%KX247632.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49154915100%0.099%KU758875.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49154915100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49154915100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49154915100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49154915100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49154915100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49154915100%0.099%KU501215.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49114911100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49114911100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49114911100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49114911100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49114911100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49114911100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49114911100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49114911100%0.099%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49114911100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49114911100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49064906100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49064906100%0.099%KU527068.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49064906100%0.099%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49064906100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49024902100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49024902100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49024902100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49024902100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49024902100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds48974897100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome48974897100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome48974897100%0.099%KX156776.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome48974897100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds48974897100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome48934893100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds48934893100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome48934893100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds48934893100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome48934893100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome48934893100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome48934893100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds48934893100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds48934893100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome48934893100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds48934893100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome48934893100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome48934893100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds48934893100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome48884888100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome48884888100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome48884888100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48394839100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48394839100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4825482598%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47714771100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47714771100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47134713100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome46904690100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4580458095%0.098%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44354435100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds35953595100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds35953595100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds35803580100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds35803580100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds35803580100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds35803580100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35683568100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35683568100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35613561100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35523552100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35463546100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35393539100%0.088%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35353535100%0.088%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35323532100%0.088%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35143514100%0.088%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35083508100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35083508100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35053505100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds34993499100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds34783478100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34293429100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34133413100%0.087%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34133413100%0.087%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3393339368%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3355335568%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3342334268%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2906290699%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2783363574%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2677267754%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2612397188%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2057205742%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1654165433%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1654165433%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1557379777%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1523152330%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1512151230%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1290129026%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1133113323%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1068106830%0.088%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1002100230%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds97197127%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds96696627%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96096027%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds95795727%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds95795727%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds95395327%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds94894827%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds94494427%0.088%KF383029.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93993927%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds92692627%0.087%KF383031.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds92192127%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90690627%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds90290227%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89789727%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds89389327%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds88388327%0.086%KF383035.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome881349575%0.099%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome875226948%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87287296%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome866185345%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86686627%0.086%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83883816%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds72672627%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds72272227%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds72272227%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds71771727%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds71571527%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69969927%0.081%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564513%2e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62162112%2e-17399%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds61661612%1e-17199%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds57857811%3e-16099%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds53653611%8e-14899%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53553511%3e-14799%KR816333.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53153111%3e-14698%KR816335.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329144933%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295122424%4e-75100%KX101062.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome288100322%6e-7386%KX101063.1

LOCUS KU758876 2864 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 21068 polyprotein gene, partial cds. ACCESSION KU758876 VERSION KU758876.1 GI:1001229296 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2864) AUTHORS Enfissi,A., Rousset,D., Matheus,S., Codrington,J., Zonneveld,R. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2864 /organism="Zika virus" /mol_type="genomic RNA" /isolate="21068" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Suriname" /collection_date="Dec-2015" CDS 87..>2864 /codon_start=1 /product="polyprotein" /protein_id="AML81027.1" /db_xref="GI:1001229297" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGVKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISFMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNS" mat_peptide 954..2471 /product="envelope protein" ORIGIN 1 agactgcgac agttcgagtt tgaagcgaaa gctagcaaca gtatcaacag gttttatttt 61 ggatttggaa acgagagttt ctggtcatga aaaacccaaa aaagaaatcc ggaggattcc 121 ggattgtcaa tatgctaaaa cgcggagtag cccgtgtgag cccctttggg ggcttgaaga 181 ggctgccagc cggacttctg ctgggtcatg ggcccatcag gatggtcctg gcgattctag 241 cctttttgag attcacggca atcaagccat cactgggtct catcaataga tggggttcag 301 tggggaaaaa agaggctatg gaaataataa agaagttcaa gaaagatctg gctgccatgc 361 tgagaataat caatgctagg aaggagaaga agagacgagg cgcagatact agtgtcggaa 421 ttgttggcct cctgctgacc acagctatgg cagcggaggt cactagacgt gggagtgcat 481 actatatgta cttggacaga aacgatgctg gggaggccat atcttttcca accacattgg 541 ggatgaataa gtgttatata cagatcatgg atcttggaca catgtgtgat gccaccatga 601 gctatgaatg ccctatgctg gatgaggggg tggaaccaga tgacgtcgat tgttggtgca 661 acacgacgtc aacttgggtt gtgtacggaa cctgccatca caaaaaaggt gaagcacgga 721 gatctagaag agctgtgacg ctcccctccc attccactag gaagctgcaa acgcggtcgc 781 aaacctggtt ggaatcaaga gaatacacaa agcacttgat tagagtcgaa aattggatat 841 tcaggaaccc tggcttcgcg ttagcagcag ctgccatcgc ttggcttttg ggaagctcaa 901 cgagccaaaa agtcatatac ttggtcatga tactgctgat tgccccggca tacagcatca 961 ggtgcatagg agtcagcaat agggactttg tggaaggtat gtcaggtggg acttgggttg 1021 atgttgtctt ggaacatgga ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg 1081 acatagagct ggttacaaca acagtcagca acatggcgga ggtaagatcc tactgctatg 1141 aggcatcaat atcagacatg gcttcggaca gccgctgccc aacacaaggt gaagcctacc 1201 ttgacaagca atcagacact caatatgtct gcaaaagaac gttagtggac agaggctggg 1261 gaaatggatg tggacttttt ggcaaaggga gcctggtgac atgcgctaag tttgcatgct 1321 ccaagaaaat gaccgggaag agcatccagc cagagaatct ggagtaccgg ataatgctgt 1381 cagttcatgg ctcccagcac agtgggatga tcgttaatga cacaggacat gaaactgatg 1441 agaatagagc gaaagttgag ataacgccca attcaccaag agccgaagcc accctggggg 1501 gttttggaag cctaggactt gattgtgaac cgaggacagg ccttgacttt tcagatttgt 1561 attacttgac tatgaataac aagcactggt tggttcacaa ggagtggttc cacgacattc 1621 cattaccttg gcacgctggg gcagacaccg gaactccaca ctggaacaac aaagaagcac 1681 tggtagagtt caaggacgca catgccaaaa ggcaaactgt cgtggttcta gggagtcaag 1741 aaggagcagt tcacacggcc cttgctggag ctctggaggc tgagatggat ggtgtaaagg 1801 gaaggctgtc ctctggccac ttgaaatgtc gcctgaaaat ggataaactt agattgaagg 1861 gcgtgtcata ctccttgtgt actgcagcgt tcacattcac caagatcccg gctgaaacac 1921 tgcacgggac agtcacagtg gaggtacagt acgcagggac agatggacct tgcaaggttc 1981 cagctcagat ggcggtggac atgcaaactc tgaccccagt tgggaggttg ataaccgcta 2041 accccgtaat cactgaaagc actgagaact ctaaaatgat gctggaactt gatccaccat 2101 ttggggactc ttacattgtc ataggagtcg gggagaagaa gatcacccac cactggcaca 2161 ggagtggcag caccattgga aaagcatttg aagccactgt gagaggtgcc aagagaatgg 2221 cagtcttagg agacacagcc tgggactttg gatcagttgg aggcgctctc aactcattgg 2281 gcaagggcat ccatcaaatt tttggagcag ctttcaaatc attgtttgga ggaatgtcct 2341 ggttctcaca aattctcatt ggaacgttgc tgatgtggtt gggtctgaac acaaagaatg 2401 gatctatttc ctttatgtgc ttggccttag ggggagtgtt gatcttctta tccacagccg 2461 tctctgctga tgtggggtgc tcggtggact tctcaaagaa ggagacgaga tgcggtacag 2521 gggtgttcgt ctataacgac gttgaagcct ggagggacag gtacaagtac catcctgact 2581 ccccccgtag attggcagcg gcagtcaagc aagcctggga agatggtatc tgcgggatct 2641 cctctgtttc aagaatggaa aacatcatgt ggagatcagt agaaggggag ctcaacgcaa 2701 tcctggaaga gaatggagtt caactgacgg tcgttgtggg atctgtaaaa aaccccatgt 2761 ggagaggtcc acagagattg cccgtgcctg tgaacgagct gccccacggc tggaaggctt 2821 gggggaaatc gtacttcgtc agagcagcaa agacaaataa cagc

Institut Pasteur de la Guyane has released a partial 2015 Zika sequence from Suriname, 21068

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49654965100%0.0100%KU758876.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49424942100%0.099%KU937936.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49384938100%0.099%KU758873.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49384938100%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49384938100%0.099%KU758870.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49334933100%0.099%KU758877.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49334933100%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49294929100%0.099%KU758872.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49294929100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49294929100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49294929100%0.099%KU365778.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49244924100%0.099%KX262887.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49244924100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49244924100%0.099%KU365777.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49204920100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49204920100%0.099%KX247632.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49154915100%0.099%KU758875.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49154915100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49154915100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49154915100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49154915100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49154915100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49154915100%0.099%KU501215.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49114911100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49114911100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49114911100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49114911100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49114911100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49114911100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49114911100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49114911100%0.099%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49114911100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49114911100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49064906100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49064906100%0.099%KU527068.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49064906100%0.099%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49064906100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49024902100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49024902100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49024902100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49024902100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49024902100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds48974897100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome48974897100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome48974897100%0.099%KX156776.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome48974897100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds48974897100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome48934893100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds48934893100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome48934893100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds48934893100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome48934893100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome48934893100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome48934893100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds48934893100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds48934893100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome48934893100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds48934893100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome48934893100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome48934893100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds48934893100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome48884888100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome48884888100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome48884888100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48394839100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48394839100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4825482598%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47714771100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47714771100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47134713100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome46904690100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4580458095%0.098%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44354435100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds35953595100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds35953595100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds35803580100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds35803580100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds35803580100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds35803580100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35683568100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35683568100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35613561100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35523552100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35463546100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35393539100%0.088%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35353535100%0.088%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35323532100%0.088%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35143514100%0.088%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35083508100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35083508100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35053505100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds34993499100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds34783478100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34293429100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34133413100%0.087%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34133413100%0.087%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3393339368%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3355335568%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3342334268%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2906290699%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2783363574%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2677267754%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2612397188%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2057205742%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1654165433%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1654165433%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1557379777%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1523152330%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1512151230%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1290129026%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1133113323%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1068106830%0.088%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1002100230%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds97197127%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds96696627%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96096027%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds95795727%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds95795727%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds95395327%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds94894827%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds94494427%0.088%KF383029.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93993927%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds92692627%0.087%KF383031.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds92192127%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90690627%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds90290227%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89789727%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds89389327%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds88388327%0.086%KF383035.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome881349575%0.099%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome875226948%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87287296%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome866185345%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86686627%0.086%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83883816%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds72672627%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds72272227%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds72272227%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds71771727%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds71571527%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69969927%0.081%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564513%2e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62162112%2e-17399%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds61661612%1e-17199%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds57857811%3e-16099%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds53653611%8e-14899%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53553511%3e-14799%KR816333.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53153111%3e-14698%KR816335.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329144933%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295122424%4e-75100%KX101062.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome288100322%6e-7386%KX101063.1

LOCUS KU758876 2864 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 21068 polyprotein gene, partial cds. ACCESSION KU758876 VERSION KU758876.1 GI:1001229296 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2864) AUTHORS Enfissi,A., Rousset,D., Matheus,S., Codrington,J., Zonneveld,R. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2864 /organism="Zika virus" /mol_type="genomic RNA" /isolate="21068" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Suriname" /collection_date="Dec-2015" CDS 87..>2864 /codon_start=1 /product="polyprotein" /protein_id="AML81027.1" /db_xref="GI:1001229297" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGVKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISFMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNS" mat_peptide 954..2471 /product="envelope protein" ORIGIN 1 agactgcgac agttcgagtt tgaagcgaaa gctagcaaca gtatcaacag gttttatttt 61 ggatttggaa acgagagttt ctggtcatga aaaacccaaa aaagaaatcc ggaggattcc 121 ggattgtcaa tatgctaaaa cgcggagtag cccgtgtgag cccctttggg ggcttgaaga 181 ggctgccagc cggacttctg ctgggtcatg ggcccatcag gatggtcctg gcgattctag 241 cctttttgag attcacggca atcaagccat cactgggtct catcaataga tggggttcag 301 tggggaaaaa agaggctatg gaaataataa agaagttcaa gaaagatctg gctgccatgc 361 tgagaataat caatgctagg aaggagaaga agagacgagg cgcagatact agtgtcggaa 421 ttgttggcct cctgctgacc acagctatgg cagcggaggt cactagacgt gggagtgcat 481 actatatgta cttggacaga aacgatgctg gggaggccat atcttttcca accacattgg 541 ggatgaataa gtgttatata cagatcatgg atcttggaca catgtgtgat gccaccatga 601 gctatgaatg ccctatgctg gatgaggggg tggaaccaga tgacgtcgat tgttggtgca 661 acacgacgtc aacttgggtt gtgtacggaa cctgccatca caaaaaaggt gaagcacgga 721 gatctagaag agctgtgacg ctcccctccc attccactag gaagctgcaa acgcggtcgc 781 aaacctggtt ggaatcaaga gaatacacaa agcacttgat tagagtcgaa aattggatat 841 tcaggaaccc tggcttcgcg ttagcagcag ctgccatcgc ttggcttttg ggaagctcaa 901 cgagccaaaa agtcatatac ttggtcatga tactgctgat tgccccggca tacagcatca 961 ggtgcatagg agtcagcaat agggactttg tggaaggtat gtcaggtggg acttgggttg 1021 atgttgtctt ggaacatgga ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg 1081 acatagagct ggttacaaca acagtcagca acatggcgga ggtaagatcc tactgctatg 1141 aggcatcaat atcagacatg gcttcggaca gccgctgccc aacacaaggt gaagcctacc 1201 ttgacaagca atcagacact caatatgtct gcaaaagaac gttagtggac agaggctggg 1261 gaaatggatg tggacttttt ggcaaaggga gcctggtgac atgcgctaag tttgcatgct 1321 ccaagaaaat gaccgggaag agcatccagc cagagaatct ggagtaccgg ataatgctgt 1381 cagttcatgg ctcccagcac agtgggatga tcgttaatga cacaggacat gaaactgatg 1441 agaatagagc gaaagttgag ataacgccca attcaccaag agccgaagcc accctggggg 1501 gttttggaag cctaggactt gattgtgaac cgaggacagg ccttgacttt tcagatttgt 1561 attacttgac tatgaataac aagcactggt tggttcacaa ggagtggttc cacgacattc 1621 cattaccttg gcacgctggg gcagacaccg gaactccaca ctggaacaac aaagaagcac 1681 tggtagagtt caaggacgca catgccaaaa ggcaaactgt cgtggttcta gggagtcaag 1741 aaggagcagt tcacacggcc cttgctggag ctctggaggc tgagatggat ggtgtaaagg 1801 gaaggctgtc ctctggccac ttgaaatgtc gcctgaaaat ggataaactt agattgaagg 1861 gcgtgtcata ctccttgtgt actgcagcgt tcacattcac caagatcccg gctgaaacac 1921 tgcacgggac agtcacagtg gaggtacagt acgcagggac agatggacct tgcaaggttc 1981 cagctcagat ggcggtggac atgcaaactc tgaccccagt tgggaggttg ataaccgcta 2041 accccgtaat cactgaaagc actgagaact ctaaaatgat gctggaactt gatccaccat 2101 ttggggactc ttacattgtc ataggagtcg gggagaagaa gatcacccac cactggcaca 2161 ggagtggcag caccattgga aaagcatttg aagccactgt gagaggtgcc aagagaatgg 2221 cagtcttagg agacacagcc tgggactttg gatcagttgg aggcgctctc aactcattgg 2281 gcaagggcat ccatcaaatt tttggagcag ctttcaaatc attgtttgga ggaatgtcct 2341 ggttctcaca aattctcatt ggaacgttgc tgatgtggtt gggtctgaac acaaagaatg 2401 gatctatttc ctttatgtgc ttggccttag ggggagtgtt gatcttctta tccacagccg 2461 tctctgctga tgtggggtgc tcggtggact tctcaaagaa ggagacgaga tgcggtacag 2521 gggtgttcgt ctataacgac gttgaagcct ggagggacag gtacaagtac catcctgact 2581 ccccccgtag attggcagcg gcagtcaagc aagcctggga agatggtatc tgcgggatct 2641 cctctgtttc aagaatggaa aacatcatgt ggagatcagt agaaggggag ctcaacgcaa 2701 tcctggaaga gaatggagtt caactgacgg tcgttgtggg atctgtaaaa aaccccatgt 2761 ggagaggtcc acagagattg cccgtgcctg tgaacgagct gccccacggc tggaaggctt 2821 gggggaaatc gtacttcgtc agagcagcaa agacaaataa cagc

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49654965100%0.0100%KU758875.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49514951100%0.099%KU312312.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49474947100%0.099%KU312313.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49424942100%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49424942100%0.099%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49384938100%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49334933100%0.099%KU758873.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49334933100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49334933100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49334933100%0.099%KU365778.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49294929100%0.099%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49294929100%0.099%KX262887.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49294929100%0.099%KU937936.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49294929100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49294929100%0.099%KU365777.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49244924100%0.099%KU758872.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49244924100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49244924100%0.099%KX247632.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49204920100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49204920100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49204920100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49204920100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49204920100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49204920100%0.099%KU501215.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49154915100%0.099%KU758876.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49154915100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49154915100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49154915100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49154915100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49154915100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49154915100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49154915100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49154915100%0.099%KU501216.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49154915100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49114911100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49114911100%0.099%KU527068.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49114911100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49064906100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49064906100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49064906100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49064906100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49064906100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds49024902100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome49024902100%0.099%KX247646.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds49024902100%0.099%KU820897.2Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome49024902100%0.099%KX156776.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome49024902100%0.099%KX087102.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome49024902100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds49024902100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome48974897100%0.099%KX253996.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome48974897100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds48974897100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome48974897100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome48974897100%0.099%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds48974897100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds48974897100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome48974897100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds48974897100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome48974897100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome48974897100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds48974897100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome48934893100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome48934893100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome48934893100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48434843100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48434843100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4830483098%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47764776100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47764776100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47184718100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome46954695100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4585458595%0.098%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44394439100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds36133613100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds36133613100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds35993599100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds35993599100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds35993599100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds35993599100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35863586100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35863586100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35793579100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35703570100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35643564100%0.089%KU955594.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35503550100%0.088%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35503550100%0.089%AY632535.2Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35483548100%0.088%DQ859059.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35263526100%0.088%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35233523100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35233523100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35173517100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds35143514100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds34903490100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34423442100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34253425100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34253425100%0.088%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3397339768%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3360336068%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3346334668%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2897289799%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2783363574%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2677267754%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2617397688%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2057205742%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1645164533%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1645164533%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1557380077%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1514151430%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1503150330%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1299129926%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1133113323%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1072107230%0.088%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1002100230%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds97597527%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds97197127%0.089%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96996927%0.089%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds96696627%0.089%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds96296227%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds95795727%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds95395327%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds94894827%0.088%KF383029.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93393327%0.088%KF383039.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds93093027%0.087%KF383031.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds92692627%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90290227%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds89789727%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89389327%0.086%KF383041.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome888349375%0.092%KU940227.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds88888827%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds88388327%0.086%KF383035.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome881228048%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87987996%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome872185945%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86386327%0.085%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83883816%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds71771727%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds71371327%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds71371327%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds70870827%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds70670627%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69069027%0.080%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds63663613%1e-17799%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62562512%2e-17499%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds62162112%2e-17399%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds58158111%2e-16199%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds54054011%6e-14999%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53853811%2e-14899%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53653611%8e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329144933%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295122424%4e-75100%KX101062.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome288100322%6e-7386%KX101063.1

LOCUS KU758875 2882 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 15042 polyprotein gene, partial cds. ACCESSION KU758875 VERSION KU758875.1 GI:1001229294 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2882) AUTHORS Enfissi,A., Rousset,D., Matheus,S. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2882 /organism="Zika virus" /mol_type="genomic RNA" /isolate="15042" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Guiana" /collection_date="Jan-2016" CDS 88..>2882 /codon_start=1 /product="polyprotein" /protein_id="AML81026.1" /db_xref="GI:1001229295" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHTCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNAKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDG" mat_peptide 955..2472 /product="envelope protein" ORIGIN 1 cagactgcga cagttcgagt ttgaagcgag agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactatatgt acttggacag aaacgatgct ggggaggcca tatcttttcc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acacgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca 901 acgagccaaa aagtcatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggttgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaagttga gataacgccc aattcaccaa gagccgaagc caccttgggg 1501 gggtttggaa gcctaggact tgattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ctggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg tactgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgct 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttgg gagacacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaattctcat tggaacgttg ctgatgtggt tgggtctgaa cgcaaagaat 2401 ggatctattt cccttatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc agcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaacgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt cagagcagca aagacaaata acagctttgt cgtggatggt 2881 ga

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Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds49654965100%0.0100%KU758874.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49564956100%0.099%KU758869.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49514951100%0.099%KU758868.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49514951100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49514951100%0.099%KU853012.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49294929100%0.099%KX262887.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49244924100%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49244924100%0.099%KU758870.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49244924100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49244924100%0.099%KX247632.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49204920100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49204920100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49204920100%0.099%KU940228.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds49204920100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49204920100%0.099%KU527068.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49204920100%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49154915100%0.099%KU758873.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49154915100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49154915100%0.099%KU926309.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49154915100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49154915100%0.099%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49154915100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49154915100%0.099%KU501216.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49154915100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49154915100%0.099%KU365778.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49154915100%0.099%KJ776791.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49114911100%0.099%KU758877.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49114911100%0.099%KU937936.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome49114911100%0.099%KU926310.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49114911100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49114911100%0.099%KU365777.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49114911100%0.099%KU321639.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49064906100%0.099%KU758872.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49064906100%0.099%KX197192.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49024902100%0.099%KU758875.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome49024902100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome49024902100%0.099%KX156776.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49024902100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49024902100%0.099%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome49024902100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome49024902100%0.099%KU922960.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds49024902100%0.099%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49024902100%0.099%KU501215.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds48974897100%0.099%KU758876.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome48974897100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds48974897100%0.099%KU820897.2Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome48974897100%0.099%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome48974897100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds48974897100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome48974897100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome48974897100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome48974897100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds48974897100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds48974897100%0.099%KU955589.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome48974897100%0.099%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds48974897100%0.099%KU866423.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds48974897100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds48974897100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome48974897100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds48974897100%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome48974897100%0.099%KU497555.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds48974897100%0.099%KU312312.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome48934893100%0.099%KX156775.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds48934893100%0.099%KU312313.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48434843100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48434843100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4830483098%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47764776100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47764776100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47274727100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome46864686100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4585458595%0.098%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44484448100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds36443644100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds36443644100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds36313631100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds36313631100%0.089%HQ234498.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds36223622100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds36223622100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID36173617100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds36113611100%0.089%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds36093609100%0.089%KF383115.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds36003600100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35973597100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35973597100%0.089%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35773577100%0.089%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35733573100%0.089%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35623562100%0.089%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35593559100%0.089%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35593559100%0.089%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35533553100%0.089%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds35503550100%0.089%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds35263526100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34693469100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34523452100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34523452100%0.088%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3384338468%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3364336468%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3351335168%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2908290899%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2792363474%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268654%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2625398388%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2057205742%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1658165833%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1658165833%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1572380677%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1526152630%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1516151630%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1290129026%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1133113323%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1077107730%0.089%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1020102030%0.087%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds98098027%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds97597527%0.089%KF383026.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds96696627%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds96296227%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds96296227%0.088%KF383029.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96096027%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds95795727%0.088%KF383036.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds95795727%0.088%KF383033.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds93993927%0.088%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds93593527%0.088%KF383031.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93393327%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds92492427%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds91591527%0.087%KF383046.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90290227%0.087%KF383045.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds90190127%0.086%KF383035.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds89789727%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89389327%0.086%KF383041.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds89089096%0.068%DQ859064.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds88888827%0.086%KF383042.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome884348675%0.092%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome872227148%0.099%KX101064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome866184845%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86386327%0.085%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83483416%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds71371327%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds70870827%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds70870827%0.081%KF383015.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds70270227%0.081%KF383021.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds70270227%0.081%KF383020.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds68668627%0.080%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds65065013%0.0100%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62562512%2e-17499%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds62162112%2e-17399%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds58158111%2e-16199%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds54054011%6e-14999%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53853811%2e-14899%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53653611%8e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329143833%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295121024%4e-75100%KX101062.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome289100122%2e-7387%KX101063.1

LOCUS KU758874 2840 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 20114 polyprotein gene, partial cds. ACCESSION KU758874 VERSION KU758874.1 GI:1001229292 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2840) AUTHORS Enfissi,A., Rousset,D., Matheus,S. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2840 /organism="Zika virus" /mol_type="genomic RNA" /isolate="20114" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Guiana" /collection_date="Jan-2016" CDS 88..>2840 /codon_start=1 /product="polyprotein" /protein_id="AML81025.1" /db_xref="GI:1001229293" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGKLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFV" mat_peptide 955..2472 /product="envelope protein" ORIGIN 1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactacatgt acttggacag aaacgatgct ggggaggcca tatcttttcc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cctggctttt gggaagctca 901 acgagccaaa aagtcatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggttgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaggttga gataacgccc aattcaccaa gagccgaagc caccctgggg 1501 ggttttggaa gcctaggact tgattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaagctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg taccgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgcc 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttgg gagacacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaatcctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2401 ggatctattt ccctcatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc agcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaatgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49654965100%0.0100%KU758873.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49564956100%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49564956100%0.099%KU758870.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49514951100%0.099%KU758877.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49514951100%0.099%KU937936.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49514951100%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49474947100%0.099%KU758872.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49474947100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49474947100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49474947100%0.099%KU365778.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49424942100%0.099%KX262887.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49424942100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49424942100%0.099%KU365777.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49384938100%0.099%KU758876.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49384938100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49384938100%0.099%KX247632.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49334933100%0.099%KU758875.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49334933100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49334933100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49334933100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49334933100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49334933100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49334933100%0.099%KU501215.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49294929100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49294929100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49294929100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49294929100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49294929100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49294929100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49294929100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49294929100%0.099%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49294929100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49294929100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49244924100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49244924100%0.099%KU527068.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49244924100%0.099%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49244924100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49204920100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49204920100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49204920100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49204920100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49204920100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds49154915100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome49154915100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome49154915100%0.099%KX156776.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome49154915100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds49154915100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome49114911100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds49114911100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome49114911100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds49114911100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome49114911100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome49114911100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome49114911100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds49114911100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds49114911100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome49114911100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds49114911100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome49114911100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome49114911100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds49114911100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome49064906100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome49064906100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome49064906100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48574857100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48574857100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4843484398%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47894789100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47894789100%0.099%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47314731100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome47084708100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4607460795%0.099%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44534453100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds36133613100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds36133613100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds35993599100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds35993599100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds35993599100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds35993599100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35863586100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35863586100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35793579100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35703570100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35643564100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35573557100%0.089%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35533553100%0.089%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35503550100%0.089%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35323532100%0.088%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35263526100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35263526100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35233523100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds35173517100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds34963496100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34563456100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34313431100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34313431100%0.088%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3406340668%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3369336968%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3355335568%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2915291599%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2792364474%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2691269154%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2630398988%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2066206642%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1654165433%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1654165433%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1572381377%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1523152330%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1512151230%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1299129926%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1139113923%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1077107730%0.089%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1011101130%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds98098027%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds97597527%0.089%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96996927%0.089%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds96696627%0.089%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds96696627%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds96296227%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds95795727%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds95395327%0.088%KF383029.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93993927%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds93593527%0.088%KF383031.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds93093027%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90690627%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds90290227%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89789727%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds89389327%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds89289227%0.086%KF383035.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome888350475%0.092%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome881228048%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87587596%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome872186245%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86686627%0.086%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83483416%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds72672627%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds72272227%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds72272227%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds71771727%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds71571527%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69969927%0.081%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64164113%2e-17999%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62562512%2e-17499%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds62162112%2e-17399%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58558511%2e-16299%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds58158111%2e-16199%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds54054011%6e-14999%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53853811%2e-14899%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53653611%8e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds52952910%1e-14599%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52652610%1e-14499%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52652610%1e-14499%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52652610%1e-14499%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50250210%2e-13799%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds49949910%2e-13699%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4124128%2e-11098%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329145233%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295123024%4e-75100%KX101062.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome288100922%6e-7386%KX101063.1

LOCUS KU758873 2868 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 18246 polyprotein gene, partial cds. ACCESSION KU758873 VERSION KU758873.1 GI:1001229290 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2868) AUTHORS Enfissi,A., Rousset,D., Matheus,S. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2868 /organism="Zika virus" /mol_type="genomic RNA" /isolate="18246" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Guiana" /collection_date="Jan-2016" CDS 88..>2868 /codon_start=1 /product="polyprotein" /protein_id="AML81024.1" /db_xref="GI:1001229291" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSF" mat_peptide 955..2472 /product="envelope protein" ORIGIN 1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactatatgt acttggacag aaacgatgct ggggaggcca tatcttttcc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca 901 acgagccaaa aagtcatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggttgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg cgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaagttga gataacgccc aattcaccaa gagccgaagc caccctgggg 1501 ggttttggaa gcctaggact tgattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg tactgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgct 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttgg gagacacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaattctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2401 ggatctattt cccttatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc ggcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaacgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt cagagcagca aagacaaata acagcttt