niman

LOCUS KU232293 679 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232293 VERSION KU232293.1 GI:987894985 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 679) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 679) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..679 /organism="Zika virus" /mol_type="genomic RNA" /isolate="057ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>679 /codon_start=3 /product="NS5 protein" /protein_id="AME17078.1" /db_xref="GI:987894986" /translation="LGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYA DDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTV MDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWL QSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEE VPFCSHH" ORIGIN 1 cccttggatt cttgaacgag gatcactgga tggggagaga gaactcagga ggtggtgttg 61 aagggctggg attacaaaga ctcggatatg tcctagaaga gatgagtcgc ataccaggag 121 gaaggatgta tgcagatgac actgctggct gggacacccg catcagcagg tttgatctgg 181 agaatgaagc cctaatcacc aaccaaatgg agaaagggca cagggccttg gcattggcca 241 taatcaagta cacataccaa aacaaagtgg taaaggtcct tagaccagct gaaaaaggga 301 aaacagttat ggacattatt tcgagacaag accaaagggg gagcggacaa gttgtcactt 361 acgctcttaa cacatttacc aacctagtgg tgcaactcat tcggaatatg gaggctgagg 421 aagttctaga gatgcaagac ttgtggctgc tgcggaggtc agagaaagtg accaactggt 481 tgcagagcaa cggatgggat aggctcaaac gaatggcagt cagtggagat gattgcgttg 541 tgaagccaat tgatgatagg tttgcacatg ccctcaggtt cttgaatgat atgggaaaag 601 ttaggaagga cacacaagag tggaaaccct caactggatg ggacaactgg gaagaagttc 661 cgttttgctc ccaccattt

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds12541254100%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds12541254100%0.0100%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome12491249100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome12491249100%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds12491249100%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds12491249100%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds12451245100%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds12431243100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds12431243100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome12431243100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds12431243100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds12431243100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds12431243100%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds12431243100%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds12401240100%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds12401240100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds12401240100%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds12381238100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds12381238100%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds12381238100%0.099%KM078929.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds12271227100%0.099%KF993678.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1225122598%0.099%KJ873160.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds11881188100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds11821182100%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1144114491%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1044104499%0.095%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds92992976%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds90290276%0.098%KM851038.1

LOCUS KU232294 679 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232294 VERSION KU232294.1 GI:987894987 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 679) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 679) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..679 /organism="Zika virus" /mol_type="genomic RNA" /isolate="061ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>679 /codon_start=3 /product="NS5 protein" /protein_id="AME17079.1" /db_xref="GI:987894988" /translation="ALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMY ADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKT VMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNW LQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWE EVPFCSH" ORIGIN 1 aagcccttgg attcttgaac gaggatcact ggatggggag agagaactca ggaggtggtg 61 ttgaagggct gggattacaa agactcggat atgtcctaga agagatgagt cgcataccag 121 gaggaaggat gtatgcagat gacactgctg gctgggacac ccgcatcagc aggtttgatc 181 tggagaatga agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg 241 ccataatcaa gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag 301 ggaaaacagt tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca 361 cttacgctct taacacattt accaacctag tggtgcaact cattcggaat atggaggctg 421 aggaagttct agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact 481 ggttgcagag caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg 541 ttgtgaagcc aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa 601 aagttaggaa ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag 661 ttccgttttg ctcccacca

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1240124099%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1240124099%0.0100%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1234123499%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1234123499%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1234123499%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1234123499%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1230123099%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1229122999%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1229122999%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1229122999%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1229122999%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1229122999%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1229122999%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1229122999%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1225122599%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1225122599%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1225122599%0.099%KM078933.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1225122599%0.099%KJ873160.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1223122399%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1223122399%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1223122399%0.099%KM078929.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1212121299%0.099%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1173117399%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1168116899%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1144114492%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1029102999%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds92992977%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds90290277%0.098%KM851038.1

LOCUS KU232295 672 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232295 VERSION KU232295.1 GI:987894989 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 672) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 672) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..672 /organism="Zika virus" /mol_type="genomic RNA" /isolate="068ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>672 /codon_start=1 /product="NS5 protein" /protein_id="AME17080.1" /db_xref="GI:987894990" /translation="GFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYAD DTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVM DIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQ SNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEV PFCSHH" ORIGIN 1 ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg tgttgaaggg 61 ctgggattac aaagactcgg atatgtccta gaagagatga gtcgcatacc aggaggaagg 121 atgtatgcag atgacactgc tggctgggac acccgcatca gcaggtttga tctggagaat 181 gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt ggccataatc 241 aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa agggaaaaca 301 gttatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt cacttacgct 361 cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc tgaggaagtt 421 ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa ctggttgcag 481 agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg cgttgtgaag 541 ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg aaaagttagg 601 aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga agttccgttt 661 tgctcccacc at

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1243124399%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1243124399%0.0100%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1238123899%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1238123899%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1238123899%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1238123899%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1234123499%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1232123299%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1232123299%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1232123299%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1232123299%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1232123299%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1232123299%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1232123299%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1229122999%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1229122999%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1229122999%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1227122799%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1227122799%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1227122799%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1225122598%0.099%KJ873160.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1216121699%0.099%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1177117799%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1171117199%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1144114492%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1033103399%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds92992976%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds90290276%0.098%KM851038.1

LOCUS KU232296 676 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232296 VERSION KU232296.1 GI:987894991 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 676) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 676) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..676 /organism="Zika virus" /mol_type="genomic RNA" /isolate="045ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>676 /codon_start=3 /product="NS5 protein" /protein_id="AME17081.1" /db_xref="GI:987894992" /translation="GFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYAD DTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVM DIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQ SNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEV PFCSHH" ORIGIN 1 ttggattctt gaacgaggat cactggatgg ggagagagaa ctcaggaggt ggtgttgaag 61 ggctgggatt acaaagactc ggatatgtcc tagaagagat gagtcgcata ccaggaggaa 121 ggatgtatgc agatgacact gctggctggg acacccgcat cagcaggttt gatctggaga 181 atgaagctct aatcaccaac caaatggaga aagggcacag ggccttggca ttggccataa 241 tcaagtacac ataccaaaac aaagtggtaa aggtccttag accagctgaa aaagggaaaa 301 cagttatgga cattatttcg agacaagacc aaagggggag cggacaagtt gtcacttacg 361 ctcttaacac atttaccaac ctagtggtgc aactcattcg gaatatggag gctgaggaag 421 ttctagagat gcaagacttg tggctgctgc ggaggtcaga gaaagtgacc aactggttgc 481 agagcaacgg atgggatagg ctcaaacgaa tggcagtcag tggagatgat tgcgttgtga 541 agccaattga tgataggttt gcacatgccc tcaggttctt gaatgatatg ggaaaagtta 601 ggaaggacac acaagagtgg aaaccctcaa ctggatggga caactgggaa gaagttccgt 661 tttgctccca ccattt

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1232123299%0.099%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1232123299%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1229122999%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1229122999%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1229122999%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1229122999%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1225122599%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1223122399%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1223122399%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1223122399%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1223122399%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1223122399%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1223122399%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1223122399%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1222122299%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1222122299%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1222122299%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1220122099%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1220122099%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1220122099%0.099%KM078929.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1211121199%0.099%KF993678.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1204120497%0.099%KJ873160.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1178117899%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1175117599%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1124112491%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1063106399%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds91991976%0.098%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds89289276%0.098%KM851038.1

LOCUS KU232297 693 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232297 VERSION KU232297.1 GI:987894993 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 693) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 693) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..693 /organism="Zika virus" /mol_type="genomic RNA" /isolate="049ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>693 /codon_start=2 /product="NS5 protein" /protein_id="AME17082.1" /db_xref="GI:987894994" /translation="EALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRM YADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGK TVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTN WLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNW EEVPFCSHHFNK" ORIGIN 1 tgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg 61 tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga gtcgcatacc 121 aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca gcaggtttga 181 tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt 241 ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa 301 agggaaaaca gtcatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt 361 cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc 421 tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa 481 ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg 541 cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg 601 aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga 661 ggttccgttt tgctcccacc atttcaacaa gcahttp://www.ncbi.nlm.nih.gov/nuccore/KU232297.1

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds12181218100%0.099%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds12181218100%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome12141214100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome12141214100%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds12141214100%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds12141214100%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds12111211100%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds12091209100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds12091209100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome12091209100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds12091209100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds12091209100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds12091209100%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds12091209100%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds12071207100%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds12071207100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds12071207100%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds12051205100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds12051205100%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds12051205100%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1198119898%0.099%KJ873160.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds11961196100%0.099%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds11641164100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds11601160100%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1119111992%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds10471047100%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds91391376%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds89089076%0.098%KM851038.1

LOCUS KU232298 678 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232298 VERSION KU232298.1 GI:987894995 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 678) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 678) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..678 /organism="Zika virus" /mol_type="genomic RNA" /isolate="050ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>678 /codon_start=2 /product="NS5 protein" /protein_id="AME17083.1" /db_xref="GI:987894996" /translation="LGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYA DDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTV MDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWL QSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEE VPFCSHH" ORIGIN 1 ccttggattc ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga 61 agggctggga ttacaaagac tcggatatgt cctagaagag atgagtcgca taccaggagg 121 aaggatgtat gcagatgaca ctgctggctg ggacacccgc atcagcaggt ttgatctgga 181 gaatgaagct ctaatcacca accaaatgga gaaagggcac agggccttgg cattggccat 241 aatcaagtac acataccaaa acaaagtggt aaaggtcctt agaccagctg aaaaagggaa 301 aacagttatg gacattattt cgagacaaga ccaaaggggg agcggacaag ttgtcactta 361 cgctcttaac acatttacca acctagtggt gcaactcatt cggaatatgg aggctgagga 421 agttctagag atgcaagact tgtggctgct gcggaggtca gagaaagtga ccaactggtt 481 gcagagcaac ggatgggata ggctcaaacg aatggcagtc agtggagatg attgcgttgt 541 gaagccaatt gatgataggt ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt 601 taggaaggac acacaagagt ggaaaccctc aactggatgg gacaactggg aagaagttcc 661 gttttgctcc caccattthttp://www.ncbi.nlm.nih.gov/nuccore/KU232298.1

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1852518525100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1850718507100%0.099%KU365777.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1850218502100%0.099%KU365780.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1842018420100%0.099%KU509998.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842018420100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1842018420100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1841718417100%0.099%KJ776791.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1841118411100%0.099%KU501215.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1840818408100%0.099%KU321639.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1838418384100%0.099%KU501217.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1838118381100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1838118381100%0.099%KU501216.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177661776699%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177211772198%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1761217612100%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164691646999%0.096%HQ234499.1

LOCUS KU707826 10648 bp RNA linear VRL 12-FEB-2016 DEFINITION Zika virus isolate SSABR1, complete genome. ACCESSION KU707826 VERSION KU707826.1 GI:992324757 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10648) AUTHORS Alcantara,L.C.J., Giovanetti,M., Nunes,M.R.T., Vasconcelos,J.M., Vianez,J.L. Jr. and da Silva,S.P. TITLE Zika virus genome from Salvador, Bahia, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10648) AUTHORS Alcantara,L.C.J., Giovanetti,M., Nunes,M.R.T., Vasconcelos,J.M., Vianez,J.L. Jr. and da Silva,S.P. TITLE Direct Submission JOURNAL Submitted (11-FEB-2016) Centro de Pesquisas Goncalo Moniz, Fundacao Oswaldo Cruz, Rua Waldemar Falcao, 121, Candeal, Salvador, Bahia 40296710, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Mira v. v. 4.0; Geneious v. v. 7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10648 /organism="Zika virus" /mol_type="genomic RNA" /isolate="SSABR1" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="01-Jul-2015" /note="type: Asian" CDS 79..10350 /codon_start=1 /product="polyprotein" /protein_id="AMH87239.1" /db_xref="GI:992324758" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggttttat ttggatttgg 61 aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc 121 aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca 181 gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg 241 agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa 301 aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata 361 atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg aattgttggc 421 ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc atactatatg 481 tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat 541 aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa 601 tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg 661 tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga 721 agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg 781 ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat attcaggaac 841 cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa 901 aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat caggtgcata 961 ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacctgggt tgatgttgtc 1021 ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag 1081 ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca 1141 atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag 1201 caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg gggaaatgga 1261 tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa 1321 atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct gtcagttcat 1381 ggctcccagc acagtgggat gattgttaat gacacaggac atgaaactga tgagaataga 1441 gcgaaagttg agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga 1501 agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg 1561 actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct 1621 tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag 1681 ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca 1741 gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg 1801 tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca 1861 tactccttgt gtactgcagc gttcacattc accaagatcc cggctgaaac actgcacggg 1921 acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag 1981 atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc taaccccgta 2041 atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac 2101 tcttacattg tcataggagt cggggagaag aagatcaccc accactggca caggagtggc 2161 agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg 2221 ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc 2281 atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca 2341 caaattctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt 2401 tcccttatgt gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct 2461 gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac aggggtgttc 2521 gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt 2581 agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt 2641 tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaacgc aatcctggaa 2701 gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt 2761 ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa 2821 tcgtacttcg tcagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg 2881 aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc 2941 ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat 3001 ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac 3061 tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg 3121 aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat 3181 ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag agagggctac 3241 aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc 3301 ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca 3361 accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca 3421 ctgtcgttcc gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa 3481 ccagaaagca acttagtaag gtcaatggtg actgcaggat caactgatca catggaccac 3541 ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg 3601 accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga 3661 ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg 3721 aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg 3781 ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc 3841 ttggcctcgt gtcttttgca aactgcgatc tccgccttgg aaggcgacct gatggttctc 3901 atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgat 3961 aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg 4021 gcgtggagag caggccttgc tacttgcggg gggtttatgc tcctctctct gaagggaaaa 4081 ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg 4141 gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg 4201 ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc 4261 aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat tgtcagttac 4321 gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa 4381 aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt 4441 gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact caaggtggtc 4501 ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac 4561 gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa 4621 gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt 4681 tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc 4741 acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc 4801 aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac 4861 agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg 4921 cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca 4981 ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat 5041 ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa 5101 gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta 5161 gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagcc 5221 ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg 5281 gaggaggccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccac 5341 tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag 5401 ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt cacagatccc 5461 tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc 5521 atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca 5581 attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg 5641 acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc 5701 gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag 5761 acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac tgacatttca 5821 gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg 5881 gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc 5941 gctgcccaga ggagggggcg cataggcagg aatcccaaca aacctggaga tgagtatctg 6001 tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg 6061 ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc 6121 gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt 6181 gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc 6241 ggaataacct acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg 6301 gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg 6361 aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt 6421 gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga 6481 cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag 6541 actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt 6601 atgcttttgg ggttgctggg aacagtctcg ctgggaatct tcttcgtctt gatgaggaac 6661 aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg 6721 tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gtttctattg 6781 ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca 6841 atcatcatca tggtagcagt aggtcttctg ggcttgatta ccgccaatga actcggatgg 6901 ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga gggggcaacc 6961 ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc 7021 ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata caacaactac 7081 tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca 7141 ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgctactc acaattaaca 7201 cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca 7261 gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag 7321 aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa 7381 gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg 7441 tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact 7501 ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac 7561 atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct 7621 ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc 7681 cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag 7741 gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct 7801 gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat 7861 ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc 7921 cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg 7981 ttggtgcaaa gctatgggtg gaacatagtc cgtcttaaga gtggggtgga cgtctttcat 8041 atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc atctagtcct 8101 gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa 8161 agaccaggag ccttttgtat aaaggtgttg tgcccataca ccagcactat gatggaaacc 8221 ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac 8281 tctacacatg agatgtattg ggtctctgga gcgaaaagca acaccataaa aagtgtgtcc 8341 accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag 8401 gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac 8461 atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc 8521 tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca 8581 caagggtcag cgtcctctct aataaacggg gttgtcaggc tcctgtcaaa accctgggat 8641 gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga 8701 gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt 8761 atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc 8821 tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt 8881 gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct 8941 ctagtggata aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac 9001 atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc 9061 atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac 9121 gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa 9181 agactcggat atgtcctaga agagatgagt cgtataccag gaggaaggat gtatgcagat 9241 gacactgctg gctgggacac ccgcatcagc aggtttgatc tggagaatga agctctaatc 9301 accaaccaaa tggaaaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac 9361 caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt 9421 atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct taacacattt 9481 accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa 9541 gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg 9601 gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat 9661 aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa 9721 gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccac 9781 ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat 9841 gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct 9901 tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc 9961 cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga 10021 actacctggt caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg 10081 tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc agttacgaaa 10141 tggacagaca tcccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg 10201 cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg 10261 atcataggtg atgaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt 10321 gaagaagggt ctacacctgg agtgctgtaa gcaccagtct taatgttgtc aggcctgcta 10381 gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa 10441 ccaagcctat agtcaggccg agaacgccat ggcacggaag aagccatgct gcctgtgagc 10501 ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga 10561 aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag ctgtggatct 10621 ccagaagagg gactagtggt tagaggag

LOCUS KU707826 10648 bp RNA linear VRL 12-FEB-2016 DEFINITION Zika virus isolate SSABR1, complete genome. ACCESSION KU707826 VERSION KU707826.1 GI:992324757 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10648) AUTHORS Alcantara,L.C.J., Giovanetti,M., Nunes,M.R.T., Vasconcelos,J.M., Vianez,J.L. Jr. and da Silva,S.P. TITLE Zika virus genome from Salvador, Bahia, Brazilhttp://www.ncbi.nlm.nih.gov/nuccore/KU707826.1

LOCUS KU527068 10808 bp RNA linear VRL 11-FEB-2016 DEFINITION Zika virus strain Natal RGN, complete genome. ACCESSION KU527068 VERSION KU527068.1 GI:982894594 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10808) AUTHORS Mlakar,J., Korva,M., Tul,N., Popovic,M., Poljsak-Prijatelj,M., Mraz,J., Kolenc,M., Resman Rus,K., Vesnaver Vipotnik,T., Fabjan Vodusek,V., Vizjak,A., Pizem,J., Petrovec,M. and Avsic Zupanc,T. TITLE Zika Virus Associated with Microcephaly JOURNAL N. Engl. J. Med. (2016) In press PUBMED 26862926 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 10808) AUTHORS Avsic Zupanc,T. and Korva,M. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Institute of Microbiology and Immunology, University of Ljubljana, Faculty of Medicine, Vrazov trg 2, Ljubljana 1000, Slovenia FEATURES Location/Qualifiers source 1..10808 /organism="Zika virus" /mol_type="genomic RNA" /strain="Natal RGN" /isolation_source="fetus' brain autopsy" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil: Rio Grande do Norte, Natal" /collection_date="2015" CDS 108..10379 /note="contains structural and non-structural proteins" /codon_start=1 /product="polyprotein" /protein_id="AMB18850.1" /db_xref="GI:982894595" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWADGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYIVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agttgttgat ctgtgtgaat cagactgcga cagttcgagt ttgaagcgaa agctagcaac 61 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa 121 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 181 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 241 ggatggtctt ggcaattcta gcctttttga gattcacggc aatcaagcca tcactgggtc 301 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 361 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 421 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 481 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 541 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 601 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 661 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 721 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta 781 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 841 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 901 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 961 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 1021 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1081 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1141 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1201 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1261 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1321 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1381 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1441 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1501 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1561 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggtccaca 1621 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1681 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1741 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1801 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1861 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1921 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1981 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 2041 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2101 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2161 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2221 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2281 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2341 cattgtttgg aggaatgtcc tggttctcac aaatcctcat tggaacgttg ctgatgtggt 2401 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2461 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2521 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2581 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2641 aagatggtat ctgcgggatc tcctctgttt caagaatgga gaacatcatg tggagatcag 2701 tagaagggga gctcaacgca atcttggaag agaatggagt tcaactgacg gtcgttgtgg 2761 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2821 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2881 acagctttgt cgtggatggt gacacactga aggaatgccc actcgaacat agagcatgga 2941 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 3001 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggga 3061 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3121 ggctgaagag ggcccatcta atcgagatga aaacatgtga atggccaaag tcccacacat 3181 tgtgggcaga tggaatagaa gagagtgatc tgatcattcc caagtcttta gctgggccac 3241 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3301 aagagcttga aattcggttt gaggaatgcc cgggcactaa ggtccacgtg gaggaaacat 3361 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3421 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3481 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcagtggtga 3541 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3601 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3661 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3721 ttttgatggg cgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3781 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3841 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3901 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3961 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 4021 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg 4081 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4141 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4201 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4261 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4321 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4381 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4441 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4501 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4561 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4621 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4681 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4741 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4801 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4861 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4921 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4981 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 5041 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5101 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5161 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5221 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5281 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5341 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5401 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5461 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5521 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5581 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5641 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5701 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5761 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5821 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5881 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattttgg 5941 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 6001 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6061 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6121 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6181 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6241 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6301 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6361 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6421 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6481 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6541 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6601 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6661 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6721 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6781 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6841 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6901 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6961 taatgggaag gagagaggag ggagcaacca taggattctc aatggacatt gacctgcggc 7021 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7081 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7141 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7201 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7261 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7321 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7381 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7441 tagcagtagc agtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7501 gggccctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7561 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7621 ctctaatcta catagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7681 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7741 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7801 aggatggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7861 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7921 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7981 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc 8041 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8101 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8161 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8221 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8281 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8341 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8401 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8461 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8521 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8581 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8641 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8701 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8761 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8821 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8881 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8941 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 9001 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9061 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9121 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9181 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9241 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9301 ggttcgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg catagggcct 9361 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9421 ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9481 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9541 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9601 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9661 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9721 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9781 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9841 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9901 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9961 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 10021 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10081 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10141 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10201 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10261 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10321 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10381 caccaatctt aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10441 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10501 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10561 tgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10621 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggagacc 10681 ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc catgagtttc 10741 caccacgctg gccgccaggc acagatcgcc gaatagcggc ggccggtgtg gggaaatcca 10801 tgggtctt

Tonight 11 PM ET Dr. Henry L. Niman, PhDSpecial Report On Zika

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds11931193100%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds11931193100%0.0100%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome11871187100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome11871187100%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds11871187100%0.099%KM078936.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds11871187100%0.099%KJ873160.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds11871187100%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds11861186100%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds11841184100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds11841184100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome11841184100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds11841184100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds11841184100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds11841184100%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds11841184100%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds11801180100%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds11801180100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds11801180100%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds11781178100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds11781178100%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds11781178100%0.099%KM078929.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds11691169100%0.099%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds11391139100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds11331133100%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1108110893%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds10251025100%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds90290277%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds88188177%0.098%KM851038.1

LOCUS KU232299 661 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232299 VERSION KU232299.1 GI:987894997 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 661) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 661) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (03-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..661 /organism="Zika virus" /mol_type="genomic RNA" /isolate="015ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>661 /codon_start=2 /product="NS5 protein" /protein_id="AME17084.1" /db_xref="GI:987894998" /translation="LNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDT AGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDI ISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSN GWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPF CS" ORIGIN 1 cttgaacgag gatcactgga tggggagaga gaactcagga ggtggtgttg aagggctggg 61 attacaaaga ctcggatatg tcctagaaga gatgagtcgc ataccaggag gaaggatgta 121 tgcagatgac actgctggct gggacacccg catcagcagg tttgatctgg agaatgaagc 181 tctaatcacc aaccaaatgg agaaagggca cagggccttg gcattggcca taatcaagta 241 cacataccaa aacaaagtgg taaaggtcct tagaccagct gaaaaaggga aaacagttat 301 ggacattatt tcgagacaag accaaagggg gagcggacaa gttgtcactt acgctcttaa 361 cacatttacc aacctagtgg tgcaactcat tcggaatatg gaggctgagg aagttctaga 421 gatgcaagac ttgtggctgc tgcggaggtc agagaaagtg accaactggt tgcagagcaa 481 cggatgggat aggctcaaac gaatggcagt cagtggagat gattgcgttg tgaagccaat 541 tgatgatagg tttgcacatg ccctcaggtt cttgaatgat atgggaaaag ttaggaagga 601 cacacaagag tggaaaccct caactggatg ggacaactgg gaagaagttc cgttttgctc 661 c

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1243124399%0.099%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1243124399%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1240124099%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1240124099%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1240124099%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1240124099%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1236123699%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1234123499%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1234123499%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1234123499%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1234123499%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1234123499%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1234123499%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1234123499%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1232123299%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1232123299%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1232123299%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1231123199%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1231123199%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1231123199%0.099%KM078929.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1222122299%0.099%KF993678.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1214121497%0.099%KJ873160.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1189118999%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1186118699%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1135113591%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds10741074100%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds93093076%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds90290276%0.098%KM851038.1

Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cdsGenBank: KU232300.1 FASTA Graphics Go to:LOCUS KU232300 692 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232300 VERSION KU232300.1 GI:987894999 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 692) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 692) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (04-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..692 /organism="Zika virus" /mol_type="genomic RNA" /isolate="067ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>692 /codon_start=2 /product="NS5 protein" /protein_id="AME17085.1" /db_xref="GI:987895000" /translation="EALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRM YADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGK TVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTN WLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNW EEVPFCSHHFNK" ORIGIN 1 tgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg 61 tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga gtcgcatacc 121 aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca gcaggtttga 181 tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt 241 ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa 301 agggaaaaca gtyatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt 361 cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc 421 tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa 481 ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg 541 cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg 601 aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga 661 agttccgttt tgctcccacc acttcaacaa gc

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1243124399%0.099%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1243124399%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1240124099%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1240124099%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1240124099%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1240124099%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1236123699%0.099%KM078961.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1234123499%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1234123499%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1234123499%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1234123499%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1234123499%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1234123499%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1234123499%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1232123299%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1232123299%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1232123299%0.099%KM078933.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1231123199%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1231123199%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1231123199%0.099%KM078929.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds1222122299%0.099%KF993678.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1214121497%0.099%KJ873160.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1189118999%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1186118699%0.098%EU545988.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1135113591%0.099%KJ873161.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds10741074100%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds93093076%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds90290276%0.098%KM851038.1

LOCUS KU232301 692 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 072ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232301 VERSION KU232301.1 GI:987895001 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 692) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 692) AUTHORS Pessoa,R. and Sanabani,S. TITLE Direct Submission JOURNAL Submitted (04-DEC-2015) Virology, Instituto de Medicina Tropical, R. Doutor Eneias de Carvalho Aguiar, 470, Sao Paulo, SP 05403-000, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..692 /organism="Zika virus" /mol_type="genomic RNA" /isolate="072ZV_PEBR15" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-May-2015" /note="type: Asiatic" CDS <1..>692 /codon_start=2 /product="NS5 protein" /protein_id="AME17086.1" /db_xref="GI:987895002" /translation="EALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRM YADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGK TVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTN WLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNW EEVPFCSHHFNK" ORIGIN 1 tgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg 61 tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga gtcgcatacc 121 aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca gcaggtttga 181 tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt 241 ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa 301 agggaaaaca gtyatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt 361 cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc 421 tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa 481 ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg 541 cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg 601 aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga 661 agttccgttt tgctcccacc acttcaacaa gc

LOCUS KU232301 692 bp RNA linear VRL 10-FEB-2016 DEFINITION Zika virus isolate 072ZV_PEBR15 NS5 protein gene, partial cds. ACCESSION KU232301 VERSION KU232301.1 GI:987895001 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 692) AUTHORS Pessoa,R. and Sanabani,S. TITLE Investigation into an Outbreak of Dengue-like Illness in Pernambuco, Brazil Revealed a Co-circulation of Zika, Chikungunya, and Dengue Virus Type 1

LOCUS KU686218 1275 bp RNA linear VRL 09-FEB-2016 DEFINITION Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds. ACCESSION KU686218 VERSION KU686218.1 GI:987894543 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 1275) AUTHORS Diaz-Quinonez,J.A., Vazquez-Pichardo,M., Nunez-Leon,A., Torres-Rodriguez,M.L., Garces-Ayala,F., Mendieta-Condado,E.R., Escobar-Escamilla,N., Torres-Longoria,B., Lopez-Martinez,I., Ruiz-Matus,C., Kuri-Morales,P.A. and Ramirez-Gonzalez,J.E. TITLE Identification of Zika Virus in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 1275) AUTHORS Vazquez-Pichardo,M., Nunez-Leon,A., Torres-Rodriguez,M.L., Rosales-Jimenez,C., Torres-Olmos,Y.A., Perez-Meza,R., Aparicio-Antonio,A.M., Herrera-Bautista,R.M., Ortiz-Alcantara,J.M., Gonzalez-Duran,E., Garces-Ayala,F., Mendieta-Condado,E.R., Escobar-Escamilla,N., Torres-Longoria,B., Lopez-Martinez,I., Ramirez-Gonzalez,J.E. and Diaz-Quinonez,J.A. TITLE Direct Submission JOURNAL Submitted (08-FEB-2016) Biologia Molecular y Validacion de Tecnicas, Instituto de Diagnostico y Referencia Epidemiologicos (InDRE), Francisco de P. Miranda 177 Col. Lomas de Plateros, Mexico, DF 01480, Mexico COMMENT ##Assembly-Data-START## Assembly Method :: TMAP v. 4.2.18 Coverage :: 760X Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1275 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MEX/InDRE/14/2015" /isolation_source="serum" /host="Homo sapiens; 26 years old male" /db_xref="taxon:64320" /country="Mexico: Queretaro" /collection_date="22-Oct-2015" CDS 99..>1275 /codon_start=1 /product="polyprotein" /protein_id="AME17087.1" /db_xref="GI:987894544" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASPSRCPTQAAAYLDKQSDTQYVCKRTLVDSDWG " mat_peptide 474..743 /product="propeptide" mat_peptide 744..968 /product="membrane protein" mat_peptide 969..1274 /product="envelope protein" ORIGIN 1 ctgttgctgc ttcagactgc gacagttcga gtttgaagcg aaagctagca acagtatcaa 61 caggttttat ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat 121 ccggaggatt ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg 181 ggggcttgaa gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct 241 tggcgattct agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata 301 gatggggttc agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc 361 tggctgccat gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagaaa 421 ctagtgtcgg aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac 481 gtgggagtgc atactatatg tacttggaca gaaacgatgc tggggaggcc atatcttttc 541 caaccacatt ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg 601 atgccaccat gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg 661 attgttggtg caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag 721 gtgaagcacg gagatctaga agagccgtga cgctcccctc ccattccact aggaagctgc 781 aaacgcggtc gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg 841 aaaattggat attcaggaac cctggtttcg ctttagcagc agctgccatc gcgtggcttt 901 tgggaagctc aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg 961 catacagcat caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg 1021 ggacttgggt tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca 1081 aaccgactgt cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat 1141 cctactgcta tgaggcatca atatcagaca tggcttcgcc cagccgctgc ccaacacaag 1201 ccgctgccta ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg 1261 acagcgactg gggtt

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