niman

AlignSegment-IDNameScoreE-ValueIdentityEPI642509A/Michigan/39/2015 (A/H3N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI507198A/swine/Illinois/A01427305/2013 (A/H1N1) segment 3 (PA)3884.60.000000e+002135/2151 (99%)EPI507197A/swine/Illinois/A01427360/2013 (A/H1N1) segment 3 (PA)3884.60.000000e+002135/2151 (99%)EPI507195A/swine/Illinois/A01427261/2013 (A/H1N1) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI506526A/swine/Indiana/A00968358/2012 (A/H1N2) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI531531A/swine/Nebraska/A01202501/2011 (A/H1N2) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI492668A/swine/Illinois/A00843191/2013 (A/H1N2) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI468738A/swine/Indiana/A01260254/2013 (A/H3N2) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI401641A/swine/Illinois/A01125988/2012 (A/H1N2) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI502426A/swine/Minnesota/A01279807/2012 (A/H1N2) segment 3 (PA)3845.80.000000e+002128/2151 (98%)EPI615026A/swine/Illinois/A01047044/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593703A/swine/Illinois/A01047518/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593702A/swine/Illinois/A01047149/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593696A/swine/Illinois/A01047155/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593695A/swine/Illinois/A01047172/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593691A/swine/Illinois/A01047145/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593687A/swine/Illinois/A01047112/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593686A/swine/Illinois/A01047089/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593684A/swine/Illinois/A01047097/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593682A/swine/Illinois/A01047085/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593681A/swine/Illinois/A01047099/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI593680A/swine/Illinois/A01047041/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI576177A/swine/Illinois/A01047779/2011 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI576176A/swine/Illinois/A01047806/2011 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI576175A/swine/Illinois/A01047805/2011 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI557774A/swine/Illinois/A01047020/2010 (A/H1N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI542273A/swine/Ohio/10SW130/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI542267A/swine/Ohio/10SW215/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415205A/swine/Ohio/10SW219/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415189A/swine/Ohio/10SW216/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415165A/swine/Ohio/10SW212/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415149A/swine/Ohio/10SW210/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415141A/swine/Ohio/10SW209/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415133A/swine/Ohio/10SW208/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415125A/swine/Ohio/10SW207/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415117A/swine/Ohio/10SW206/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415109A/swine/Ohio/10SW205/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415093A/swine/Ohio/10SW203/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415061A/swine/Ohio/10SW137/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415045A/swine/Ohio/10SW135/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415037A/swine/Ohio/10SW134/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415029A/swine/Ohio/10SW133/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415021A/swine/Ohio/10SW132/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415013A/swine/Ohio/10SW131/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI415005A/swine/Ohio/10SW128/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI414997A/swine/Ohio/10SW127/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI414989A/swine/Ohio/10SW126/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI414973A/swine/Ohio/10SW122/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI414965A/swine/Ohio/10SW121/2010 (A/H3N2) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI615027A/swine/Illinois/A01047045/2010 (A/H1N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI615023A/swine/Illinois/A01047046/2010 (A/H1N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI593701A/swine/Illinois/A01047166/2010 (A/H1N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI593692A/swine/Illinois/A01047153/2010 (A/H1N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI593678A/swine/Illinois/A01047042/2010 (A/H1N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI499756A/swine/Minnesota/A01134337/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI415213A/swine/Ohio/10SW220/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI415181A/swine/Ohio/10SW214/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI415173A/swine/Ohio/10SW213/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI415085A/swine/Ohio/10SW202/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI415077A/swine/Ohio/10SW156/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI415053A/swine/Ohio/10SW136/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI414981A/swine/Ohio/10SW125/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI383498A/swine/Indiana/A01049091/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI371376A/swine/Indiana/A01049744/2011 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI371360A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI367850A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI351685A/swine/Indiana/A00968322/2010 (A/H3N2) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI603601A/swine/Iowa/A01202108/2011 (A/H1N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI589904A/swine/Iowa/A01049344/2010 (A/H1N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI441127A/swine/Indiana/A01202631/2011 (A/H1N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI415197A/swine/Ohio/10SW218/2010 (A/H3N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI415157A/swine/Ohio/10SW211/2010 (A/H3N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI415101A/swine/Ohio/10SW204/2010 (A/H3N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI415069A/swine/Ohio/10SW139/2010 (A/H3N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI371371A/swine/Indiana/A01049653/2011 (A/H3N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI351679A/swine/Indiana/A00968321/2010 (A/H3N2) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI371365A/swine/Indiana/A01049745/2011 (A/H3N2) segment 3 (PA)3803.40.000000e+002120/2151 (98%)EPI615043A/swine/Illinois/A01134720/2011 (A/H1N2) segment 3 (PA)3801.50.000000e+002120/2151 (98%)EPI459165A/swine/Illinois/A01328594/2012 (A/H1N2) segment 3 (PA)3801.50.000000e+002120/2151 (98%)EPI414260A/swine/Ohio/11SW212/2011 (A/H0) segment 3 (PA)3801.50.000000e+002120/2151 (98%)EPI291894A/Wisconsin/12/2010 (A/H3N2) segment 3 (PA)3801.50.000000e+002120/2151 (98%)EPI415493A/swine/Ohio/11SW161/2011 (A/H3N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI390746A/swine/Indiana/A01049964/2011 (A/H1N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI390736A/swine/Illinois/A01049952/2011 (A/H1N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI302686A/swine/Pennsylvania/62170-4/2010 (A/H3N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI302679A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI302667A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI291866A/Pennsylvania/14/2010 (A/H3N2) segment 3 (PA)3796.00.000000e+002119/2151 (98%)EPI590009A/swine/Iowa/A01049728/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI589989A/swine/Iowa/A01049762/2011 (A/H1N1) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI589958A/swine/Iowa/A01049724/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI589949A/swine/Iowa/A01049858/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI589910A/swine/Iowa/A01049723/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI585711A/swine/Illinois/A01049967/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI461433A/swine/Ohio/11SW219/2011 (A/H3N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI461402A/swine/Ohio/11SW208/2011 (A/H3N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI461396A/swine/Ohio/11SW190/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI459581A/swine/Ohio/11SW193/2011 (A/H1N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI459577A/swine/Ohio/11SW116/2011 (A/H3N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)EPI459549A/swine/Ohio/11SW349/2011 (A/H3N2) segment 3 (PA)3790.40.000000e+002118/2151 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642511A/Michigan/39/2015 (A/H3N2) segment 2 (PB1)4200.40.000000e+002274/2274 (100%)EPI468741A/swine/Indiana/A01260254/2013 (A/H3N2) segment 2 (PB1)4122.80.000000e+002260/2274 (99%)EPI557540A/Wisconsin/24/2014 (A/H3N2) segment 2 (PB1)4111.80.000000e+002258/2274 (99%)EPI459156A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 2 (PB1)4095.10.000000e+002255/2274 (99%)EPI396195A/Ohio/78/2012 (A/H3N2) segment 2 (PB1)4089.60.000000e+002254/2274 (99%)EPI393679A/West Virginia/10/2012 (A/H3N2) segment 2 (PB1)4089.60.000000e+002254/2274 (99%)EPI467751A/swine/Illinois/A01244401/2012 (A/H1N1) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI433531A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI433525A/swine/Indiana/A01260041/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI414184A/swine/Indiana/A00968394/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI414176A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI414168A/swine/Indiana/A00968398/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI401683A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI401679A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI401666A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI398516A/swine/Ohio/A01133464/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397937A/Ohio/41/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397757A/Wisconsin/35/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397530A/Ohio/47/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397522A/Ohio/44/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397514A/Ohio/36/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397430A/Ohio/81/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397383A/Indiana/138/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397349A/Ohio/37/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397337A/Hawaii/03/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI397094A/Ohio/34/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI396297A/Maryland/23/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI396260A/Indiana/127/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI396252A/Indiana/126/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI395292A/Maryland/25/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI395285A/Ohio/71/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI395265A/Ohio/65/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI395257A/Ohio/35/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI393693A/West Virginia/16/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI393304A/Indiana/18/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI388280A/Indiana/13/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI381871A/Hawaii/03/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI381847A/Indiana/12/2012 (A/H3N2) segment 2 (PB1)4084.10.000000e+002253/2274 (99%)EPI398477A/swine/Maryland/A01104040/2012 (A/H3N2) segment 2 (PB1)4080.40.000000e+002252/2274 (99%)EPI397221A/Indiana/144/2012 (A/H3N2) segment 2 (PB1)4080.40.000000e+002252/2274 (99%)EPI388288A/Indiana/17/2012 (A/H3N2) segment 2 (PB1)4080.40.000000e+002252/2274 (99%)EPI433570A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI401608A/swine/Ohio/A00138552/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI398498A/swine/Ohio/A01133466/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397930A/Ohio/19/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397923A/Ohio/18/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397917A/Ohio/17/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397749A/Ohio/87/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397660A/Maryland/28/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397501A/Indiana/104/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397339A/Indiana/150/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397109A/Pennsylvania/17/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI396238A/Indiana/103/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI396206A/Indiana/149/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI395946A/swine/Indiana/A00968376/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI395938A/swine/Indiana/A00968373/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI395925A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI395917A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI395881A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI395326A/West Virginia/06/2011 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI394943A/Maryland/22/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI393665A/Ohio/28/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI393517A/Indiana/65/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI393315A/Ohio/38/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI393309A/West Virginia/09/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI393296A/Indiana/21/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI392932A/Minnesota/11/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI388361A/Indiana/16/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI388337A/Ohio/16/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI388317A/Ohio/20/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI388303A/Ohio/14/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI378521A/Indiana/09/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI378513A/Indiana/07/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI378500A/Indiana/07/2012 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI346491A/West Virginia/06/2011 (A/H3N2) segment 2 (PB1)4078.50.000000e+002252/2274 (99%)EPI397402A/Indiana/99/2012 (A/H3N2) segment 2 (PB1)4074.80.000000e+002251/2274 (98%)EPI395738A/swine/Indiana/A00968386/2012 (A/H3N2) segment 2 (PB1)4074.80.000000e+002251/2274 (98%)EPI509733A/swine/Iowa/13H075/2013 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI502433A/swine/Indiana/A01260093/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI502428A/swine/Indiana/A01260109/2012 (A/H1N1) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI499944A/swine/Iowa/13H087/2013 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI467758A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI446874A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI446866A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI446833A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI446795A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI443545A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI433301A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI433293A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI396284A/Ohio/43/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002252/2275 (98%)EPI396181A/Indiana/77/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI395954A/swine/Indiana/A00968379/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI395889A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI395249A/Indiana/152/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI393509A/Ohio/52/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI388310A/Ohio/15/2012 (A/H3N2) segment 2 (PB1)4073.00.000000e+002251/2274 (98%)EPI395716A/swine/Indiana/A01104023/2012 (A/H3N2) segment 2 (PB1)4071.10.000000e+002250/2274 (98%)EPI392733A/Pennsylvania/13/2012 (A/H3N2) segment 2 (PB1)4069.30.000000e+002245/2266 (99%)EPI467347A/swine/Illinois/A01158994/2013 (A/H1N1) segment 2 (PB1)4067.40.000000e+002250/2274 (98%)EPI443553A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 2 (PB1)4067.40.000000e+002251/2275 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642510A/Michigan/39/2015 (A/H3N2) segment 1 (PB2)4207.80.000000e+002280/2280 (100%)EPI507304A/swine/Illinois/A01427261/2013 (A/H1N1) segment 1 (PB2)4089.60.000000e+002257/2279 (99%)EPI531529A/swine/Nebraska/A01202501/2011 (A/H1N2) segment 1 (PB2)4084.10.000000e+002256/2279 (98%)EPI507422A/swine/Illinois/A01427360/2013 (A/H1N1) segment 1 (PB2)4084.10.000000e+002256/2279 (98%)EPI492628A/swine/Illinois/A00843191/2013 (A/H1N2) segment 1 (PB2)4084.10.000000e+002256/2279 (98%)EPI507408A/swine/Illinois/A01427305/2013 (A/H1N1) segment 1 (PB2)4073.00.000000e+002254/2279 (98%)EPI502397A/swine/Minnesota/A01279807/2012 (A/H1N2) segment 1 (PB2)4034.20.000000e+002247/2279 (98%)EPI401640A/swine/Illinois/A01125988/2012 (A/H1N2) segment 1 (PB2)4028.70.000000e+002246/2279 (98%)EPI506474A/swine/Indiana/A00968358/2012 (A/H1N2) segment 1 (PB2)4006.50.000000e+002242/2279 (98%)EPI489076A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 1 (PB2)3978.80.000000e+002237/2279 (98%)EPI615675A/swine/Illinois/A01134579/2011 (A/H1N2) segment 1 (PB2)3973.30.000000e+002236/2279 (98%)EPI615419A/swine/Illinois/A01134578/2011 (A/H1N2) segment 1 (PB2)3973.30.000000e+002236/2279 (98%)EPI459210A/swine/Illinois/A01134580/2011 (A/H1N2) segment 1 (PB2)3973.30.000000e+002236/2279 (98%)EPI489160A/swine/Indiana/04254/2011 (A/H1N2) segment 1 (PB2)3967.70.000000e+002235/2279 (98%)EPI459168A/swine/Illinois/A01328594/2012 (A/H1N2) segment 1 (PB2)3967.70.000000e+002235/2279 (98%)EPI489104A/swine/Arkansas/SG1384/2011 (A/H1N2) segment 1 (PB2)3962.20.000000e+002234/2279 (98%)EPI489083A/swine/Arkansas/SG1377/2011 (A/H1N2) segment 1 (PB2)3962.20.000000e+002234/2279 (98%)EPI506430A/swine/Indiana/A00968332/2011 (A/H1N2) segment 1 (PB2)3956.60.000000e+002233/2279 (97%)EPI489146A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 1 (PB2)3956.60.000000e+002233/2279 (97%)EPI489069A/swine/Arkansas/SG1375/2011 (A/H1N2) segment 1 (PB2)3956.60.000000e+002233/2279 (97%)EPI390739A/swine/Indiana/A01049953/2011 (A/H1N2) segment 1 (PB2)3951.10.000000e+002232/2279 (97%)EPI489090A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 1 (PB2)3945.60.000000e+002231/2279 (97%)EPI490782A/swine/Arkansas/SG1382/2011 (A/H1N2) segment 1 (PB2)3940.00.000000e+002230/2279 (97%)EPI489097A/swine/Arkansas/SG1383/2011 (A/H1N2) segment 1 (PB2)3940.00.000000e+002230/2279 (97%)EPI451212A/swine/Illinois/A01158947/2012 (A/H1N2) segment 1 (PB2)3934.50.000000e+002229/2279 (97%)EPI584490A/swine/Michigan/A01202035/2011 (A/H1N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI584427A/swine/Michigan/A01202036/2011 (A/H1N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI390744A/swine/Indiana/A01049964/2011 (A/H1N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI384177A/swine/Indiana/A01202621/2011 (A/H3N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI384167A/swine/Iowa/A01202573/2011 (A/H3N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI383834A/swine/Iowa/A01202530/2011 (A/H3N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI342606A/swine/NY/A01104005/2011 (A/H3N2) segment 1 (PB2)3928.90.000000e+002228/2279 (97%)EPI398547A/swine/Illinois/A01240908/2011 (A/H3N2) segment 1 (PB2)3927.10.000000e+002227/2279 (97%)EPI584455A/swine/Michigan/A01202037/2011 (A/H1N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI461422A/swine/Ohio/11SW233/2011 (A/H0) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI441124A/swine/Indiana/A01202631/2011 (A/H1N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI424024A/swine/Indiana/A00968365/2012 (A/H1N1) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI415295A/swine/Ohio/11SW87/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI384162A/swine/Iowa/A01202529/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI371358A/swine/North Carolina/A01049436/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI369042A/swine/Illinois/A00857138b/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI369034A/swine/Illinois/A00857138a/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI369019A/swine/Illinois/A00857300/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI351659A/swine/Iowa/A01202659/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI351650A/swine/Iowa/A01202640/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI344394A/Indiana/10/2011 (A/H3N2) segment 1 (PB2)3923.40.000000e+002227/2279 (97%)EPI589907A/swine/Iowa/A01049723/2011 (A/H1N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI453424A/swine/Korea/D79/2011 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI453423A/swine/Korea/A18/2011 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI433564A/swine/Indiana/A01327215/2012 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI415673A/swine/Ohio/11SW192/2011 (A/H1N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI397307A/swine/Ohio/1/2012 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI384217A/swine/Illinois/A01241842/2012 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI384157A/swine/Iowa/A01202639/2011 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI384152A/swine/Iowa/A01241840/2012 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI371374A/swine/Indiana/A01049744/2011 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI345358A/Indiana/10/2011 (A/H3N2) segment 1 (PB2)3917.90.000000e+002226/2279 (97%)EPI414200A/swine/Illinois/A01076709/2010 (A/H3N2) segment 1 (PB2)3916.00.000000e+002225/2279 (97%)EPI389979A/swine/Illinois/A01240575/2011 (A/H3N2) segment 1 (PB2)3916.00.000000e+002225/2279 (97%)EPI433559A/swine/Indiana/A01327213/2012 (A/H3N2) segment 1 (PB2)3914.20.000000e+002225/2279 (97%)EPI589954A/swine/Iowa/A01049724/2011 (A/H1N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI465141A/swine/Illinois/A01240835/2012 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI459550A/swine/Ohio/11SW116/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI459522A/swine/Ohio/11SW177/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI459490A/swine/Ohio/11SW162/2011 (A/H1N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI453422A/swine/Korea/KSB/2012 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415827A/swine/Ohio/11SW217/2011 (A/H0) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415665A/swine/Ohio/11SW191/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415657A/swine/Ohio/11SW189/2011 (A/H0) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415589A/swine/Ohio/11SW178/2011 (A/H0) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415571A/swine/Ohio/11SW174/2011 (A/H1N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415546A/swine/Ohio/11SW171/2011 (A/H0) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415528A/swine/Ohio/11SW169/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415511A/swine/Ohio/11SW166/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415339A/swine/Ohio/11SW98/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415331A/swine/Ohio/11SW97/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415311A/swine/Ohio/11SW94/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415303A/swine/Ohio/11SW93/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415287A/swine/Ohio/11SW119/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415271A/swine/Ohio/11SW115/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI415263A/swine/Ohio/11SW114/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI397327A/swine/Ohio/6/2012 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI385912A/swine/Illinois/A01241871/2012 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI383496A/swine/Indiana/A01049091/2010 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI344402A/Indiana/08/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI333194A/Indiana/08/2011 (A/H3N2) segment 1 (PB2)3912.30.000000e+002225/2279 (97%)EPI384054A/swine/Ohio/A01203186/2012 (A/H3N2) segment 1 (PB2)3908.60.000000e+002224/2279 (97%)EPI590015A/swine/Iowa/A01049728/2011 (A/H1N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI465131A/swine/Iowa/A01202878/2011 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI457287A/swine/Korea/CY03-14/2012 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI457152A/swine/Korea/CY03-19/2012 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI457144A/swine/Korea/CY03-18/2012 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI457136A/swine/Korea/CY03-17/2012 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI457128A/swine/Korea/CY03-16/2012 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI457120A/swine/Korea/CY03-15/2012 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI443489A/swine/Minnesota/A01328944/2012 (A/H1N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI415793A/swine/Ohio/11SW211/2011 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI415777A/swine/Ohio/11SW209/2011 (A/H0) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI415718A/swine/Ohio/11SW201/2011 (A/H0) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)EPI415699A/swine/Ohio/11SW197/2011 (A/H3N2) segment 1 (PB2)3906.80.000000e+002224/2279 (97%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642508A/Michigan/39/2015 (A/H3N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI586040A/swine/Illinois/A01555570/2015 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568714A/swine/Missouri/A01555163/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI545854A/swine/Iowa/A01476426/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI531099A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI530311A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI508898A/swine/Illinois/A01409928/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI508860A/swine/Illinois/A01410110/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI508838A/swine/Illinois/A01409932/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI505041A/swine/Illinois/A01410018/2013 (A/H0) segment 7 (MP)1790.50.000000e+00977/982 (99%)EPI586064A/swine/Iowa/A01478820/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI584736A/swine/Illinois/A01555638/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI573471A/swine/Iowa/A01840226/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI530301A/swine/Illinois/A01410453/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI530286A/swine/Illinois/A01475190/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1783.10.000000e+00976/982 (99%)EPI620634A/swine/Iowa/A01554775/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI597642A/swine/Iowa/A01476877/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI597636A/swine/Iowa/A01476878/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642512A/Michigan/39/2015 (A/H3N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI586039A/swine/Illinois/A01555570/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI584735A/swine/Illinois/A01555638/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI538991A/swine/Michigan/A01410962/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI573052A/swine/Iowa/A01840061/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI545853A/swine/Iowa/A01476426/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI597689A/swine/Minnesota/A01566287/2014 (A/H1N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI545777A/swine/Minnesota/A01565282/2014 (A/H1N2) segment 6 (NA)2521.80.000000e+001396/1411 (98%)EPI531098A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI597692A/swine/Minnesota/A01566612/2014 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI538921A/swine/Minnesota/A01501738/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI600310A/swine/Minnesota/A01566625/2014 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI590498A/swine/Minnesota/A01470654/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558899A/swine/Iowa/A01566473/2014 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI545881A/swine/Minnesota/A01482977/2014 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542568A/swine/South Dakota/A01482581/2014 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI586063A/swine/Iowa/A01478820/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI508859A/swine/Illinois/A01410110/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI623636A/swine/Iowa/A02077681/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510215A/swine/Illinois/A01475015/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510200A/swine/Illinois/A01410268/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510191A/swine/Illinois/A01411463/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510174A/swine/Illinois/A01411461/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2495.90.000000e+001390/1410 (98%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2495.90.000000e+001390/1410 (98%)EPI600302A/swine/South Dakota/A01483859/2014 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI573573A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3142.30.000000e+001701/1701 (100%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3105.30.000000e+001694/1701 (99%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001688/1699 (99%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3070.30.000000e+001689/1702 (99%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI572979A/swine/Indiana/A01555087/2014 (A/H0) segment 4 (HA)3062.90.000000e+001686/1701 (99%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1701 (99%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3055.50.000000e+001684/1699 (99%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3055.50.000000e+001684/1699 (99%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3055.50.000000e+001684/1699 (99%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3055.50.000000e+001684/1699 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3049.90.000000e+001683/1699 (99%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3049.90.000000e+001683/1699 (99%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3049.90.000000e+001683/1699 (99%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3049.90.000000e+001683/1699 (99%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3049.90.000000e+001683/1699 (99%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)3044.40.000000e+001682/1699 (98%)EPI641411A/swine/Minnesota/A01822846/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001684/1702 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)3040.70.000000e+001681/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3040.70.000000e+001681/1699 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)

Isolate name: A/Michigan/39/2015 Isolate ID: EPI_ISL_195645 Passage details/history: M1/S1 Type: A / H3N2 Lineage: Sample information Collection date: 2015-06-12 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: United States / Michigan Additional location information: Patient age: Gender: Outbreak: Treatment: Specimen source: Institute information Originating lab: Michigan Department of Community Health Sample ID given by the sample provider: CL15-430377 Address: Michigan Department of Community Health Viral Isolation and Molecular Testing 3350 N. Martin Luther King, Jr. Blvd Lansing, 48909 United States Submitting lab: Centers for Disease Control and Prevention Sample ID given by the submitting laboratory: 3000412061 Authors: Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence PB2 3000412061_273027_v1_1 2280 EPI642510 PB1 3000412061_273027_v1_2 2274 EPI642511 PA 3000412061_273027_v1_3 2151 EPI642509 HA 3000412061_273027_v1_4 1701 EPI642513 NP 3000412061_273027_v1_5 1497 EPI642506 NA 3000412061_273027_v1_6 1410 EPI642512 MP 3000412061_273027_v1_7 982 EPI642508 NS 3000412061_273027_v1_8 838 EPI642507 Submitter information Submitter: Jang, Yunho Submission Date: 2015-09-04 Last modifier: Davis, Todd Last modified: 2015-09-08 Address: Centers for Disease Control and Prevention WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division 1600 Clifton Road, N.E. Atlanta, GA 30333 United States

Novel Influenza A Viruses:One human infection with a novel influenza A virus was reported by the state of Michigan. The person was infected with an influenza A (H3N2) variant (H3N2v) virus and was hospitalized in June 2015 as a result of their illness, but has fully recovered. No human-to-human transmission has been identified and the case reported close contact with swine in the week prior to illness onset. Early identification and investigation of human infections with novel influenza A viruses are critical so that risk of infection can be more fully appreciated and appropriate public health measures can be taken. Additional information on influenza in swine, variant influenza infection in humans, and strategies to interact safely with swine can be found at http://www.cdc.gov/flu/swineflu/index.htm. http://www.cdc.gov/flu/weekly/

Week 34 FluView describes hospitalized H3N2v case in Michigan.

H5N8 map update https://www.google.com/maps/d/edit?mid=zv94AJqgUct4.ktIjI0Pz2tn8&hl=en

In Utah, as of September 2015, HPAI has only been detected in two healthy ducks, which were tested in association with enhanced surveillance activities in December 2014 and August 2015. http://wildlife.utah.gov/diseases/avian_influenza.php

07-31-2015 e Mallard Davis UT EA H5 d 08-21-2015 Utah DWR L http://www.aphis.usda.gov/wildlife_damage/downloads/WILD BIRD POSITIVE HIGHLY PATHOGENIC AVIAN INFLUENZA CASES IN THE UNITED STATES.pdf

APHIS is reporting detection of Fujian clade 2.3.4.4 H5 in a asymptomatic mallard in Davis Utah collected July 31, 2015.

Middle East Respiratory Syndrome coronavirus (MERS-CoV) – Saudi ArabiaDisease outbreak news 8 September 2015 Between 26 and 31 August 2015, the National IHR Focal Point for the Kingdom of Saudi Arabia notified WHO of 22 additional cases of Middle East respiratory syndrome coronavirus (MERS-CoV) infection, including 3 deaths. Fifteen (15) of these reported cases are associated with a MERS-CoV outbreak currently occurring in a hospital in Riyadh city. Details of the casesA 57-year-old, non-national male from Riyadh city developed symptoms on 26 August and was admitted to hospital on 30 August. The patient, who has comorbidities, tested positive for MERS-CoV on 31 August. Currently, he is in critical condition in ICU. Investigation of history of exposure to the known risk factors in the 14 days prior to the onset of symptoms is ongoing.A 58-year-old male from Riyadh city was admitted to hospital due to chronic conditions on 9 May. This hospital has been experiencing a MERS-CoV outbreak. On 26 August, while hospitalized, the patient developed symptoms and, on 28 August, tested positive for MERS-CoV. Currently, he is in stable condition in a negative pressure isolation room on a ward. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 38-year-old male from Riyadh city developed symptoms on 27 August and, on the same day, was admitted to hospital. The patient, who has comorbidities, tested positive for MERS-CoV on 29 August. Currently, he is in stable condition in a negative pressure isolation room on a ward. The patient came in contact with three laboratory-confirmed MERS-CoV cases (see DON published on 26 August – case no. 7; see DON published on 27 August – case no. 1; see present DON – case no. 7) while visiting at hospital. He has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 70-year-old female from Riyadh city developed symptoms on 24 August and, on 26 August, was admitted to hospital. The patient tested positive for MERS-CoV on 28 August. Currently, she is in critical condition in ICU. Due to chronic conditions, the patient visited the hospital that has been experiencing a MERS-CoV outbreak in the 14 days prior to the onset of symptoms. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 33-year-old, non-national, female health care worker from Riyadh city developed symptoms on 24 August and, on 25 August, was admitted to the hospital where she works. This hospital has been experiencing a MERS-CoV outbreak. The patient, who has no comorbidities, tested positive for MERS-CoV on 27 August. Currently, she is in stable condition in home isolation. Investigation of possible epidemiological links with MERS-CoV cases in the hospital is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.An 80-year-old female from Riyadh city developed symptoms on 27 August and, on 28 August, was admitted to hospital. The patient tested positive for MERS-CoV on 30 August. Currently, she is in stable condition in a negative pressure isolation room on a ward. Due to chronic conditions, the patient visited the hospital that has been experiencing a MERS-CoV outbreak in the 14 days prior to the onset of symptoms. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 34-year-old male from Riyadh city developed symptoms on 28 August and, on 30 August, was admitted to hospital on the same day. The patient, who has no comorbidities, tested positive for MERS-CoV on 30 August. Currently, he is in stable condition in home isolation. The patient came in contact with two laboratory-confirmed MERS-CoV cases (see DON published on 26 August – case no. 7; see DON published on 27 August – case no. 1) while visiting at hospital. He has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 67-year-old male from Hail city developed symptoms on 25 August and, on 27 August, was admitted to hospital. The patient, who has comorbidities, tested positive for MERS-CoV on 29 August. Currently, he is in critical condition in ICU. The patient underwent medical procedure in the hospital in Riyadh that has been experiencing a MERS-CoV outbreak. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 24-year-old, non-national male health care worker from Riyadh city developed symptoms on 23 August and, on 24 August, was admitted to the hospital where he works. This hospital has been experiencing a MERS-CoV outbreak. The patient, who has no comorbidities, tested positive for MERS-CoV on 26 August. Currently, he is in critical condition in ICU. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 55-year-old male from Al-Muzahmiyya city developed symptoms on 27 August and, on 28 August, was admitted to hospital. The patient, who has comorbidities, tested positive for MERS-CoV on 29 August. Currently, he is in stable condition in a negative pressure isolation room on a ward. The patient has a history of frequent contact with camels and consumption of their raw milk. He has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 54-year-old male from Najran city developed symptoms on 12 August and, on 27 August, was admitted to hospital. The patient, who had comorbidities and was a heavy smoker, tested positive for MERS-CoV on 28 August. He passed away on 29 August. Investigation of history of exposure to known risk factors in the 14 days prior to the onset of symptoms is ongoing.A 68-year-old female from Riyadh city was admitted to hospital due to chronic conditions on 2 August and, on 22 August, was discharged. This hospital has been experiencing a MERS-CoV outbreak. On 24 August, the patient developed symptoms and, on 27 August, was admitted to another hospital. She tested positive for MERS-CoV on 28 August and, on the same day, passed away. Investigation of possible epidemiological links with MERS-CoV cases in the first hospital or with shared health care workers is ongoing. The patient had no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 50-year-old male from Delam city developed symptoms on 19 August and, on 23 August, was admitted to hospital. The patient, who has comorbidities, tested positive for MERS-CoV on 25 August. Currently, he is in stable condition in a negative pressure isolation room on a ward. The patient has a history of frequent contact with camels and consumption of their raw milk. He has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 77-year-old female from Riyadh city underwent routine medical procedure for chronic conditions on 17 August at the hospital that has been experiencing a MERS-CoV outbreak. The patient developed symptoms on 24 August and, on 25 August, was admitted to another hospital. She tested positive for MERS-CoV on 26 August. Currently, the patient is in critical condition in ICU. Investigation of possible epidemiological links with MERS-CoV cases in the first hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 25-year-old, female health care worker from Riyadh city developed symptoms on 24 August and, on the same day, was admitted to hospital. The patient, who has no comorbidities, tested positive for MERS-CoV on 25 August. Currently, she is in stable condition in home isolation. The patient provided care to a laboratory-confirmed MERS-CoV case (see DON published on 2 September – case no. 11) in the 14 days prior to the onset of symptoms.A 58-year-old female from Riyadh city was admitted to hospital due to chronic conditions on 4 August. This hospital has been experiencing a MERS-CoV outbreak. On 20 August, while hospitalized, she developed symptoms and, on 22 August, tested positive for MERS-CoV. Currently, the patient is in critical condition in ICU. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.An 87-year-old female from Riyadh city was admitted to hospital due to chronic conditions on 4 August. This hospital has been experiencing a MERS-CoV outbreak. On 19 August, while hospitalized, she developed symptoms and, on 21 August, tested positive for MERS-CoV. The patient passed away on 27 August. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient had no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 30-year-old female from Riyadh city was admitted to hospital due to chronic conditions on 2 August. This hospital has been experiencing a MERS-CoV outbreak. On 20 August, while hospitalized, she developed symptoms and, on 22 August, tested positive for MERS-CoV. Currently, the patient is in critical condition in ICU. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 78-year-old male from Riyadh city was admitted to hospital due to chronic conditions on 8 August. This hospital has been experiencing a MERS-CoV outbreak. On 17 August, while hospitalized, he developed symptoms and, on 19 August, tested positive for MERS-CoV. Currently, the patient is in critical condition in ICU. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 32-year-old, male health care worker from Delam city developed symptoms on 23 August and, on the same day, was admitted to the hospital where he works. The patient, who has no comorbidities, tested positive for MERS-CoV on 24 August. Currently, he is in stable condition in home isolation. Investigation of possible epidemiological links with MERS-CoV cases in the hospital is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 65-year-old male from Hofuf city developed symptoms on 16 August and, on 19 August, was admitted to hospital. The patient, who has comorbidities, tested positive for MERS-CoV on 23 August. Currently, he is in critical condition in ICU. The patient has a history of frequent contact with camels and consumption of their raw milk. He has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.A 60-year-old male from Riyadh city was admitted to hospital due to chronic conditions and, on 9 August, was discharged. This hospital has been experiencing a MERS-CoV outbreak. On 16 August, the patient developed symptoms and, on 18 August, was admitted to the same hospital. He tested positive for MERS-CoV on 20 August. Currently, the patient is in critical condition in ICU. Investigation of possible epidemiological links with MERS-CoV cases in the hospital or with shared health care workers is ongoing. The patient has no history of exposure to other known risk factors in the 14 days prior to the onset of symptoms.Contact tracing of household and healthcare contacts is ongoing for these cases. The National IHR Focal Point for the Kingdom of Saudi Arabia also notified WHO of the death of 8 MERS-CoV cases that were reported in previous DONs on 2 September (case no. 2, 6, 7), on 27 August (case no. 4), on 26 August (case no. 15), on 21 August (case no. 3, 18) and on 18 August (case no. 1). Globally, since September 2012, WHO has been notified of 1,517 laboratory-confirmed cases of infection with MERS-CoV, including at least 539 related deaths. WHO adviceBased on the current situation and available information, WHO encourages all Member States to continue their surveillance for acute respiratory infections and to carefully review any unusual patterns. Infection prevention and control measures are critical to prevent the possible spread of MERS-CoV in health care facilities. It is not always possible to identify patients with MERS-CoV early because like other respiratory infections, the early symptoms of MERS-CoV are non-specific. Therefore, health-care workers should always apply standard precautions consistently with all patients, regardless of their diagnosis. Droplet precautions should be added to the standard precautions when providing care to patients with symptoms of acute respiratory infection; contact precautions and eye protection should be added when caring for probable or confirmed cases of MERS-CoV infection; airborne precautions should be applied when performing aerosol generating procedures. Until more is understood about MERS-CoV, people with diabetes, renal failure, chronic lung disease, and immunocompromised persons are considered to be at high risk of severe disease from MERS‐CoV infection. Therefore, these people should avoid close contact with animals, particularly camels, when visiting farms, markets, or barn areas where the virus is known to be potentially circulating. General hygiene measures, such as regular hand washing before and after touching animals and avoiding contact with sick animals, should be adhered to. Food hygiene practices should be observed. People should avoid drinking raw camel milk or camel urine, or eating meat that has not been properly cooked. WHO remains vigilant and is monitoring the situation. Given the lack of evidence of sustained human-to-human transmission in the community, WHO does not recommend travel or trade restrictions with regard to this event. Raising awareness about MERS-CoV among travellers to and from affected countries is good public health practice. Public health authorities in host countries preparing for mass gatherings should ensure that all recommendations and guidance issued by WHO with respect to MERS-CoV have been appropriately taken into consideration and made accessible to all concerned officials. Public health authorities should plan for surge capacity to ensure that visitors during the mass gathering can be accommodated by health systems.

Latest WHO update describes 22 more MERS cases. http://www.who.int/csr/don/08-september-2015-mers-saudi-arabia/en/

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(A/H5N1) segment 8 (NS)1432.30.000000e+00806/823 (97%)EPI372703A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 8 (NS)1432.30.000000e+00806/823 (97%)EPI538753A/chicken/Egypt/13VIR-2962-24/2013 (A/H5N1) segment 8 (NS)1423.00.000000e+00797/812 (98%)EPI294648A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 8 (NS)1421.20.000000e+00794/808 (98%)EPI372767A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 8 (NS)1415.70.000000e+00803/823 (97%)EPI372697A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 8 (NS)1415.70.000000e+00803/823 (97%)EPI372691A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 8 (NS)1415.70.000000e+00803/823 (97%)EPI372685A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 8 (NS)1415.70.000000e+00803/823 (97%)EPI372803A/Egypt/N01644/2010 (A/H5N1) segment 8 (NS)1410.10.000000e+00802/823 (97%)EPI372791A/Egypt/N11981/2009 (A/H5N1) segment 8 (NS)1410.10.000000e+00802/823 (97%)EPI372773A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 8 (NS)1410.10.000000e+00802/823 (97%)EPI372747A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 8 (NS)1410.10.000000e+00802/823 (97%)EPI294578A/duck/Egypt/3982-12/2010 (A/H5N1) segment 8 (NS)1410.10.000000e+00792/808 (98%)EPI372839A/Egypt/N03072/2010 (A/H5N1) segment 8 (NS)1404.60.000000e+00801/823 (97%)EPI372673A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 8 (NS)1404.60.000000e+00803/825 (97%)EPI294478A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 8 (NS)1400.90.000000e+00787/803 (98%)EPI372797A/Egypt/N01360/2010 (A/H5N1) segment 8 (NS)1399.00.000000e+00801/824 (97%)EPI372761A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 8 (NS)1399.00.000000e+00800/823 (97%)EPI294464A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 8 (NS)1395.30.000000e+00786/803 (97%)EPI372779A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 8 (NS)1393.50.000000e+00799/823 (97%)EPI550490A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 8 (NS)1391.60.000000e+00792/813 (97%)EPI123486A/herring gull/Sweden/V1116/06 (A/H5N1) segment 8 (NS)1388.00.000000e+00798/823 (96%)EPI58628A/chicken/Egypt/2253-1/2006 (A/H5N1) segment 8 (NS)1388.00.000000e+00798/823 (96%)EPI294627A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 8 (NS)1386.10.000000e+00787/807 (97%)EPI294606A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 8 (NS)1386.10.000000e+00779/795 (97%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642540A/Egypt/682/2015 (A/H5N1) segment 5 (NP)2758.20.000000e+001497/1497 (100%)EPI574126A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 5 (NP)2752.60.000000e+001494/1497 (99%)EPI574133A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 5 (NP)2741.50.000000e+001492/1497 (99%)EPI573253A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 5 (NP)2728.60.000000e+001490/1497 (99%)EPI584779A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 5 (NP)2724.90.000000e+001489/1497 (99%)EPI574382A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 5 (NP)2724.90.000000e+001489/1497 (99%)EPI550496A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 5 (NP)2724.90.000000e+001489/1497 (99%)EPI573261A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 5 (NP)2719.40.000000e+001488/1497 (99%)EPI557187A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 5 (NP)2713.80.000000e+001487/1497 (99%)EPI538800A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 5 (NP)2708.30.000000e+001486/1497 (99%)EPI538792A/chicken/Egypt/13VIR-2962-199/2013 (A/H5N1) segment 5 (NP)2708.30.000000e+001486/1497 (99%)EPI538784A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 5 (NP)2708.30.000000e+001486/1497 (99%)EPI538776A/duck/Egypt/13VIR-2962-196/2013 (A/H5N1) segment 5 (NP)2702.80.000000e+001485/1497 (99%)EPI538768A/duck/Egypt/13VIR-2962-195/2013 (A/H5N1) segment 5 (NP)2702.80.000000e+001485/1497 (99%)EPI493505A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 5 (NP)2702.80.000000e+001485/1497 (99%)EPI557203A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 5 (NP)2697.20.000000e+001484/1497 (99%)EPI557171A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 5 (NP)2697.20.000000e+001484/1497 (99%)EPI538760A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 5 (NP)2697.20.000000e+001484/1497 (99%)EPI557211A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 5 (NP)2675.10.000000e+001480/1497 (98%)EPI538816A/chicken/Egypt/13VIR-2962-204/2013 (A/H5N1) segment 5 (NP)2669.50.000000e+001479/1497 (98%)EPI493530A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 5 (NP)2669.50.000000e+001479/1497 (98%)EPI493431A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 5 (NP)2669.50.000000e+001479/1497 (98%)EPI493397A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 5 (NP)2669.50.000000e+001479/1497 (98%)EPI493557A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 5 (NP)2664.00.000000e+001478/1497 (98%)EPI493445A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 5 (NP)2664.00.000000e+001478/1497 (98%)EPI493349A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 5 (NP)2664.00.000000e+001478/1497 (98%)EPI557195A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 5 (NP)2658.40.000000e+001477/1497 (98%)EPI493355A/duck/Egypt/M2583D/2010 (A/H5N1) segment 5 (NP)2658.40.000000e+001477/1497 (98%)EPI493278A/duck/Egypt/M2583A/2010 (A/H5N1) segment 5 (NP)2658.40.000000e+001477/1497 (98%)EPI493193A/duck/Egypt/M2583B/2010 (A/H5N1) segment 5 (NP)2658.40.000000e+001477/1497 (98%)EPI493057A/duck/Egypt/M2583C/2010 (A/H5N1) segment 5 (NP)2658.40.000000e+001477/1497 (98%)EPI574374A/Turkey/Egypt/14139FAOS/2014 (A/H5N1) segment 5 (NP)2652.90.000000e+001476/1497 (98%)EPI550503A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 5 (NP)2652.90.000000e+001464/1479 (98%)EPI493168A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 5 (NP)2652.90.000000e+001476/1497 (98%)EPI493126A/duck/Egypt/M3075B/2011 (A/H5N1) segment 5 (NP)2652.90.000000e+001476/1497 (98%)EPI372948A/Egypt/N14976/2011 (A/H5N1) segment 5 (NP)2652.90.000000e+001476/1497 (98%)EPI372940A/Egypt/N11470/2011 (A/H5N1) segment 5 (NP)2652.90.000000e+001476/1497 (98%)EPI372852A/Egypt/N6322/2011 (A/H5N1) segment 5 (NP)2652.90.000000e+001476/1497 (98%)EPI493498A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI493470A/goose/Egypt/M2794E/2011 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI493343A/goose/Egypt/M2794A/2011 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI493206A/goose/Egypt/M2788A/2011 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI493153A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI372924A/Egypt/N09966/2011 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI372884A/Egypt/N6828/2011 (A/H5N1) segment 5 (NP)2647.40.000000e+001475/1497 (98%)EPI372932A/Egypt/N11126/2011 (A/H5N1) segment 5 (NP)2643.70.000000e+001474/1497 (98%)EPI493362A/goose/Egypt/M2788E/2011 (A/H5N1) segment 5 (NP)2641.80.000000e+001474/1497 (98%)EPI372956A/Egypt/N10621/2011 (A/H5N1) segment 5 (NP)2641.80.000000e+001474/1497 (98%)EPI493564A/duck/Egypt/S6419C/2012 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI493417A/duck/Egypt/Q4596D/2012 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI493066A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI493034A/turkey/Egypt/S6405A/2012 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI372916A/Egypt/N7724/2011 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI372860A/Egypt/N6658/2011 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI372844A/Egypt/N0544/2011 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI372808A/Egypt/N01982/2010 (A/H5N1) segment 5 (NP)2636.30.000000e+001473/1497 (98%)EPI550482A/chicken/Egypt/14VIR784-11-133AL/2013 (A/H5N1) segment 5 (NP)2634.40.000000e+001472/1496 (98%)EPI557163A/chicken/Egypt/NLQP7FL-AR747/2013 (A/H5N1) segment 5 (NP)2630.70.000000e+001472/1497 (98%)EPI372900A/Egypt/N7562/2011 (A/H5N1) segment 5 (NP)2630.70.000000e+001472/1497 (98%)EPI372876A/Egypt/N6774/2011 (A/H5N1) segment 5 (NP)2630.70.000000e+001472/1497 (98%)EPI557179A/chicken/Egypt/NLQP2AL-AR749/2013 (A/H5N1) segment 5 (NP)2625.20.000000e+001471/1497 (98%)EPI493423A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 5 (NP)2625.20.000000e+001471/1497 (98%)EPI493403A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 5 (NP)2625.20.000000e+001471/1497 (98%)EPI493079A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 5 (NP)2625.20.000000e+001471/1497 (98%)EPI538752A/chicken/Egypt/13VIR-2962-24/2013 (A/H5N1) segment 5 (NP)2619.70.000000e+001470/1497 (98%)EPI372908A/Egypt/N7592/2011 (A/H5N1) segment 5 (NP)2619.70.000000e+001470/1497 (98%)EPI372820A/Egypt/N02127/2010 (A/H5N1) segment 5 (NP)2619.70.000000e+001471/1498 (98%)EPI372814A/Egypt/N02038/2010 (A/H5N1) segment 5 (NP)2619.70.000000e+001470/1497 (98%)EPI550489A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 5 (NP)2614.10.000000e+001469/1497 (98%)EPI372868A/Egypt/N0677/2011 (A/H5N1) segment 5 (NP)2614.10.000000e+001469/1497 (98%)EPI372728A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 5 (NP)2614.10.000000e+001469/1497 (98%)EPI372832A/Egypt/N03071/2010 (A/H5N1) segment 5 (NP)2608.60.000000e+001468/1497 (98%)EPI372702A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 5 (NP)2608.60.000000e+001468/1497 (98%)EPI372722A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 5 (NP)2603.00.000000e+001467/1497 (97%)EPI372826A/Egypt/N02554/2010 (A/H5N1) segment 5 (NP)2586.40.000000e+001464/1497 (97%)EPI372708A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 5 (NP)2586.40.000000e+001464/1497 (97%)EPI372696A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 5 (NP)2586.40.000000e+001464/1497 (97%)EPI372690A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 5 (NP)2575.30.000000e+001462/1497 (97%)EPI372684A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 5 (NP)2575.30.000000e+001462/1497 (97%)EPI372838A/Egypt/N03072/2010 (A/H5N1) segment 5 (NP)2569.80.000000e+001461/1497 (97%)EPI372772A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 5 (NP)2569.80.000000e+001461/1497 (97%)EPI372766A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 5 (NP)2569.80.000000e+001461/1497 (97%)EPI294477A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 5 (NP)2569.80.000000e+001438/1462 (98%)EPI538808A/chicken/Egypt/13VIR-2962-203/2013 (A/H5N1) segment 5 (NP)2566.10.000000e+001410/1422 (99%)EPI372796A/Egypt/N01360/2010 (A/H5N1) segment 5 (NP)2564.30.000000e+001460/1497 (97%)EPI372672A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 5 (NP)2564.30.000000e+001460/1497 (97%)EPI372892A/Egypt/N0423/2011 (A/H5N1) segment 5 (NP)2558.70.000000e+001460/1498 (97%)EPI372802A/Egypt/N01644/2010 (A/H5N1) segment 5 (NP)2558.70.000000e+001459/1497 (97%)EPI372784A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 5 (NP)2558.70.000000e+001459/1497 (97%)EPI372778A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 5 (NP)2558.70.000000e+001459/1497 (97%)EPI372760A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 5 (NP)2558.70.000000e+001459/1497 (97%)EPI372746A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 5 (NP)2558.70.000000e+001459/1497 (97%)EPI372790A/Egypt/N11981/2009 (A/H5N1) segment 5 (NP)2553.20.000000e+001458/1497 (97%)EPI372754A/Egypt/2752-NAMRU3/2009 (A/H5N1) segment 5 (NP)2542.10.000000e+001456/1497 (97%)EPI372678A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 5 (NP)2540.30.000000e+001456/1497 (97%)EPI294570A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 5 (NP)2531.00.000000e+001426/1455 (98%)EPI372574A/Egypt/394-NAMRU3/2007 (A/H5N1) segment 5 (NP)2521.80.000000e+001452/1497 (96%)EPI294577A/duck/Egypt/3982-12/2010 (A/H5N1) segment 5 (NP)2520.00.000000e+001424/1455 (97%)EPI294605A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 5 (NP)2508.90.000000e+001414/1443 (97%)EPI294542A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 5 (NP)2505.20.000000e+001410/1438 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642542A/Egypt/682/2015 (A/H5N1) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI574121A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 3 (PA)3958.50.000000e+002148/2151 (99%)EPI574120A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI574385A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 3 (PA)3941.90.000000e+002145/2151 (99%)EPI549740A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI573256A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI584360A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI573264A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI538811A/chicken/Egypt/13VIR-2962-203/2013 (A/H5N1) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI538803A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI557190A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 3 (PA)3901.20.000000e+002138/2151 (99%)EPI538787A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 3 (PA)3901.20.000000e+002134/2145 (99%)EPI538795A/chicken/Egypt/13VIR-2962-199/2013 (A/H5N1) segment 3 (PA)3895.70.000000e+002131/2142 (99%)EPI493481A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI493536A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI557214A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI574377A/Turkey/Egypt/14139FAOS/2014 (A/H5N1) segment 3 (PA)3860.60.000000e+002130/2151 (99%)EPI557206A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 3 (PA)3834.80.000000e+002126/2151 (98%)EPI557198A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 3 (PA)3834.80.000000e+002126/2151 (98%)EPI538763A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 3 (PA)3831.10.000000e+002126/2152 (98%)EPI493558A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 3 (PA)3829.20.000000e+002125/2151 (98%)EPI493527A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 3 (PA)3829.20.000000e+002125/2151 (98%)EPI493408A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 3 (PA)3829.20.000000e+002125/2151 (98%)EPI493347A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 3 (PA)3829.20.000000e+002125/2151 (98%)EPI493341A/goose/Egypt/M2794A/2011 (A/H5N1) segment 3 (PA)3829.20.000000e+002125/2151 (98%)EPI493205A/goose/Egypt/M2788A/2011 (A/H5N1) segment 3 (PA)3829.20.000000e+002125/2151 (98%)EPI493467A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 3 (PA)3823.70.000000e+002124/2151 (98%)EPI493361A/goose/Egypt/M2788E/2011 (A/H5N1) segment 3 (PA)3823.70.000000e+002124/2151 (98%)EPI372927A/Egypt/N09966/2011 (A/H5N1) segment 3 (PA)3823.70.000000e+002124/2151 (98%)EPI493416A/duck/Egypt/Q4596D/2012 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493354A/duck/Egypt/M2583D/2010 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493277A/duck/Egypt/M2583A/2010 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493199A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493192A/duck/Egypt/M2583B/2010 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493186A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493055A/duck/Egypt/M2583C/2010 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI372879A/Egypt/N6774/2011 (A/H5N1) segment 3 (PA)3818.10.000000e+002123/2151 (98%)EPI493529A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI493469A/goose/Egypt/M2794E/2011 (A/H5N1) segment 3 (PA)3812.60.000000e+002122/2151 (98%)EPI372847A/Egypt/N0544/2011 (A/H5N1) segment 3 (PA)3812.60.000000e+002123/2152 (98%)EPI538819A/chicken/Egypt/13VIR-2962-204/2013 (A/H5N1) segment 3 (PA)3810.80.000000e+002101/2120 (99%)EPI372911A/Egypt/N7592/2011 (A/H5N1) segment 3 (PA)3808.90.000000e+002121/2151 (98%)EPI538779A/duck/Egypt/13VIR-2962-196/2013 (A/H5N1) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI493125A/duck/Egypt/M3075B/2011 (A/H5N1) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI372887A/Egypt/N6828/2011 (A/H5N1) segment 3 (PA)3807.10.000000e+002121/2151 (98%)EPI372855A/Egypt/N6322/2011 (A/H5N1) segment 3 (PA)3803.40.000000e+002120/2151 (98%)EPI372919A/Egypt/N7724/2011 (A/H5N1) segment 3 (PA)3801.50.000000e+002120/2151 (98%)EPI372863A/Egypt/N6658/2011 (A/H5N1) segment 3 (PA)3801.50.000000e+002120/2151 (98%)EPI538771A/duck/Egypt/13VIR-2962-195/2013 (A/H5N1) segment 3 (PA)3794.10.000000e+002118/2151 (98%)EPI372951A/Egypt/N14976/2011 (A/H5N1) segment 3 (PA)3790.40.000000e+002119/2152 (98%)EPI372943A/Egypt/N11470/2011 (A/H5N1) segment 3 (PA)3790.40.000000e+002119/2152 (98%)EPI372935A/Egypt/N11126/2011 (A/H5N1) segment 3 (PA)3790.40.000000e+002119/2152 (98%)EPI557174A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 3 (PA)3779.40.000000e+002117/2152 (98%)EPI493597A/duck/Egypt/S6419C/2012 (A/H5N1) segment 3 (PA)3779.40.000000e+002117/2152 (98%)EPI493065A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 3 (PA)3779.40.000000e+002116/2151 (98%)EPI493062A/turkey/Egypt/S6405A/2012 (A/H5N1) segment 3 (PA)3779.40.000000e+002117/2152 (98%)EPI372959A/Egypt/N10621/2011 (A/H5N1) segment 3 (PA)3773.80.000000e+002115/2151 (98%)EPI372811A/Egypt/N01982/2010 (A/H5N1) segment 3 (PA)3773.80.000000e+002115/2151 (98%)EPI372871A/Egypt/N0677/2011 (A/H5N1) segment 3 (PA)3768.30.000000e+002114/2151 (98%)EPI372903A/Egypt/N7562/2011 (A/H5N1) segment 3 (PA)3762.70.000000e+002114/2152 (98%)EPI294480A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 3 (PA)3762.70.000000e+002113/2151 (98%)EPI493422A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 3 (PA)3757.20.000000e+002112/2151 (98%)EPI493402A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 3 (PA)3757.20.000000e+002112/2151 (98%)EPI493078A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 3 (PA)3757.20.000000e+002112/2151 (98%)EPI372731A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 3 (PA)3751.70.000000e+002111/2151 (98%)EPI372817A/Egypt/N02038/2010 (A/H5N1) segment 3 (PA)3746.10.000000e+002110/2151 (98%)EPI372711A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 3 (PA)3746.10.000000e+002110/2151 (98%)EPI294466A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 3 (PA)3744.30.000000e+002107/2147 (98%)EPI372705A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 3 (PA)3740.60.000000e+002109/2151 (98%)EPI372823A/Egypt/N02127/2010 (A/H5N1) segment 3 (PA)3736.90.000000e+002108/2151 (98%)EPI372835A/Egypt/N03071/2010 (A/H5N1) segment 3 (PA)3729.50.000000e+002107/2151 (97%)EPI549739A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 3 (PA)3724.00.000000e+002107/2152 (97%)EPI549738A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 3 (PA)3724.00.000000e+002107/2152 (97%)EPI372725A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 3 (PA)3724.00.000000e+002107/2152 (97%)EPI557166A/chicken/Egypt/NLQP7FL-AR747/2013 (A/H5N1) segment 3 (PA)3718.40.000000e+002106/2152 (97%)EPI372829A/Egypt/N02554/2010 (A/H5N1) segment 3 (PA)3718.40.000000e+002105/2151 (97%)EPI557182A/chicken/Egypt/NLQP2AL-AR749/2013 (A/H5N1) segment 3 (PA)3712.90.000000e+002105/2152 (97%)EPI549737A/chicken/Egypt/14VIR784-11-133AL/2013 (A/H5N1) segment 3 (PA)3712.90.000000e+002105/2152 (97%)EPI493555A/chicken/Egypt/Q1397D/2010 (A/H5N1) segment 3 (PA)3707.30.000000e+002104/2152 (97%)EPI294650A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 3 (PA)3707.30.000000e+002097/2142 (97%)EPI294573A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 3 (PA)3705.50.000000e+002086/2126 (98%)EPI372763A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 3 (PA)3690.70.000000e+002100/2151 (97%)EPI372749A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 3 (PA)3690.70.000000e+002101/2152 (97%)EPI538755A/chicken/Egypt/13VIR-2962-24/2013 (A/H5N1) segment 3 (PA)3687.00.000000e+002100/2152 (97%)EPI372775A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 3 (PA)3687.00.000000e+002099/2151 (97%)EPI372769A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI294657A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 3 (PA)3685.20.000000e+002083/2127 (97%)EPI294608A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 3 (PA)3676.00.000000e+002074/2116 (98%)EPI372787A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 3 (PA)3670.40.000000e+002096/2151 (97%)EPI372693A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI372687A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI372577A/Egypt/394-NAMRU3/2007 (A/H5N1) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI294580A/duck/Egypt/3982-12/2010 (A/H5N1) segment 3 (PA)3664.90.000000e+002072/2116 (97%)EPI372699A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI372681A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI372793A/Egypt/N11981/2009 (A/H5N1) segment 3 (PA)3657.50.000000e+002095/2152 (97%)EPI372675A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 3 (PA)3657.50.000000e+002094/2151 (97%)EPI152047A/chicken/Egypt/5169-2/2007 (A/H5N1) segment 3 (PA)3657.50.000000e+002094/2151 (97%)EPI58650A/turkey/Egypt/2253-2/2006 (A/H5N1) segment 3 (PA)3657.50.000000e+002094/2151 (97%)EPI622508A/chicken/Egypt/06553-NLQP/2006 (A/H5N1) segment 3 (PA)3651.90.000000e+002093/2151 (97%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642543A/Egypt/682/2015 (A/H5N1) segment 2 (PB1)4193.00.000000e+002274/2274 (100%)EPI574124A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 2 (PB1)4193.00.000000e+002272/2274 (99%)EPI574131A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 2 (PB1)4170.90.000000e+002268/2274 (99%)EPI573258A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 2 (PB1)4170.90.000000e+002268/2274 (99%)EPI573266A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 2 (PB1)4148.70.000000e+002264/2274 (99%)EPI574387A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 2 (PB1)4100.70.000000e+002229/2235 (99%)EPI557176A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 2 (PB1)4098.80.000000e+002253/2271 (99%)EPI493503A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 2 (PB1)4098.80.000000e+002255/2274 (99%)EPI538813A/chicken/Egypt/13VIR-2962-203/2013 (A/H5N1) segment 2 (PB1)4084.10.000000e+002247/2266 (99%)EPI493443A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 2 (PB1)4082.20.000000e+002252/2274 (99%)EPI493346A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 2 (PB1)4082.20.000000e+002252/2274 (99%)EPI557192A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 2 (PB1)4076.70.000000e+002249/2271 (99%)EPI493428A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 2 (PB1)4076.70.000000e+002251/2274 (98%)EPI493396A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 2 (PB1)4076.70.000000e+002251/2274 (98%)EPI584777A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 2 (PB1)4071.10.000000e+002250/2274 (98%)EPI372849A/Egypt/N0544/2011 (A/H5N1) segment 2 (PB1)4071.10.000000e+002250/2274 (98%)EPI538781A/duck/Egypt/13VIR-2962-196/2013 (A/H5N1) segment 2 (PB1)4067.40.000000e+002244/2266 (99%)EPI538773A/duck/Egypt/13VIR-2962-195/2013 (A/H5N1) segment 2 (PB1)4067.40.000000e+002244/2266 (99%)EPI557216A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 2 (PB1)4065.60.000000e+002247/2271 (98%)EPI493537A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 2 (PB1)4065.60.000000e+002249/2274 (98%)EPI493495A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 2 (PB1)4065.60.000000e+002249/2274 (98%)EPI493276A/duck/Egypt/M2583A/2010 (A/H5N1) segment 2 (PB1)4065.60.000000e+002249/2274 (98%)EPI372929A/Egypt/N09966/2011 (A/H5N1) segment 2 (PB1)4065.60.000000e+002250/2275 (98%)EPI372865A/Egypt/N6658/2011 (A/H5N1) segment 2 (PB1)4065.60.000000e+002249/2274 (98%)EPI372857A/Egypt/N6322/2011 (A/H5N1) segment 2 (PB1)4065.60.000000e+002249/2274 (98%)EPI493556A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 2 (PB1)4060.10.000000e+002248/2274 (98%)EPI493421A/duck/Egypt/Q4596D/2012 (A/H5N1) segment 2 (PB1)4060.10.000000e+002249/2275 (98%)EPI493353A/duck/Egypt/M2583D/2010 (A/H5N1) segment 2 (PB1)4060.10.000000e+002248/2274 (98%)EPI493191A/duck/Egypt/M2583B/2010 (A/H5N1) segment 2 (PB1)4060.10.000000e+002248/2274 (98%)EPI372881A/Egypt/N6774/2011 (A/H5N1) segment 2 (PB1)4058.20.000000e+002247/2274 (98%)EPI538821A/chicken/Egypt/13VIR-2962-204/2013 (A/H5N1) segment 2 (PB1)4056.40.000000e+002242/2266 (98%)EPI557208A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 2 (PB1)4054.50.000000e+002245/2271 (98%)EPI493150A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 2 (PB1)4054.50.000000e+002248/2275 (98%)EPI372913A/Egypt/N7592/2011 (A/H5N1) segment 2 (PB1)4050.80.000000e+002246/2274 (98%)EPI372889A/Egypt/N6828/2011 (A/H5N1) segment 2 (PB1)4050.80.000000e+002246/2274 (98%)EPI493166A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 2 (PB1)4049.00.000000e+002247/2275 (98%)EPI493123A/duck/Egypt/M3075B/2011 (A/H5N1) segment 2 (PB1)4049.00.000000e+002246/2274 (98%)EPI550498A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 2 (PB1)4047.10.000000e+002213/2225 (99%)EPI557200A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 2 (PB1)4043.40.000000e+002243/2271 (98%)EPI493054A/duck/Egypt/M2583C/2010 (A/H5N1) segment 2 (PB1)4043.40.000000e+002245/2274 (98%)EPI372961A/Egypt/N10621/2011 (A/H5N1) segment 2 (PB1)4043.40.000000e+002245/2274 (98%)EPI372921A/Egypt/N7724/2011 (A/H5N1) segment 2 (PB1)4037.90.000000e+002244/2274 (98%)EPI372873A/Egypt/N0677/2011 (A/H5N1) segment 2 (PB1)4037.90.000000e+002244/2274 (98%)EPI493468A/goose/Egypt/M2794E/2011 (A/H5N1) segment 2 (PB1)4032.40.000000e+002243/2274 (98%)EPI493340A/goose/Egypt/M2794A/2011 (A/H5N1) segment 2 (PB1)4032.40.000000e+002243/2274 (98%)EPI493204A/goose/Egypt/M2788A/2011 (A/H5N1) segment 2 (PB1)4032.40.000000e+002243/2274 (98%)EPI372953A/Egypt/N14976/2011 (A/H5N1) segment 2 (PB1)4026.80.000000e+002242/2274 (98%)EPI372937A/Egypt/N11126/2011 (A/H5N1) segment 2 (PB1)4026.80.000000e+002242/2274 (98%)EPI372733A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 2 (PB1)4023.10.000000e+002241/2274 (98%)EPI372905A/Egypt/N7562/2011 (A/H5N1) segment 2 (PB1)4021.30.000000e+002241/2274 (98%)EPI372825A/Egypt/N02127/2010 (A/H5N1) segment 2 (PB1)4021.30.000000e+002241/2274 (98%)EPI372813A/Egypt/N01982/2010 (A/H5N1) segment 2 (PB1)4021.30.000000e+002241/2274 (98%)EPI550505A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 2 (PB1)4019.40.000000e+002220/2243 (98%)EPI557184A/chicken/Egypt/NLQP2AL-AR749/2013 (A/H5N1) segment 2 (PB1)4015.70.000000e+002238/2271 (98%)EPI493360A/goose/Egypt/M2788E/2011 (A/H5N1) segment 2 (PB1)4015.70.000000e+002240/2274 (98%)EPI294547A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 2 (PB1)4015.70.000000e+002240/2274 (98%)EPI538789A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 2 (PB1)4010.20.000000e+002208/2228 (99%)EPI372713A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 2 (PB1)4008.40.000000e+002238/2274 (98%)EPI557168A/chicken/Egypt/NLQP7FL-AR747/2013 (A/H5N1) segment 2 (PB1)4004.70.000000e+002236/2271 (98%)EPI372945A/Egypt/N11470/2011 (A/H5N1) segment 2 (PB1)4004.70.000000e+002238/2274 (98%)EPI372831A/Egypt/N02554/2010 (A/H5N1) segment 2 (PB1)4004.70.000000e+002239/2275 (98%)EPI538797A/chicken/Egypt/13VIR-2962-199/2013 (A/H5N1) segment 2 (PB1)4002.80.000000e+002203/2222 (99%)EPI538805A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 2 (PB1)4001.00.000000e+002203/2223 (99%)EPI294610A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 2 (PB1)3999.10.000000e+002233/2268 (98%)EPI294575A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 2 (PB1)3995.40.000000e+002236/2274 (98%)EPI493077A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 2 (PB1)3993.60.000000e+002236/2274 (98%)EPI493562A/duck/Egypt/S6419C/2012 (A/H5N1) segment 2 (PB1)3991.70.000000e+002238/2276 (98%)EPI493032A/turkey/Egypt/S6405A/2012 (A/H5N1) segment 2 (PB1)3991.70.000000e+002238/2276 (98%)EPI294482A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 2 (PB1)3988.00.000000e+002230/2267 (98%)EPI294659A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 2 (PB1)3984.30.000000e+002234/2274 (98%)EPI493401A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 2 (PB1)3982.50.000000e+002235/2275 (98%)EPI372837A/Egypt/N03071/2010 (A/H5N1) segment 2 (PB1)3982.50.000000e+002235/2275 (98%)EPI574379A/Turkey/Egypt/14139FAOS/2014 (A/H5N1) segment 2 (PB1)3980.70.000000e+002207/2235 (98%)EPI493427A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 2 (PB1)3977.00.000000e+002233/2274 (98%)EPI294652A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 2 (PB1)3977.00.000000e+002229/2268 (98%)EPI372707A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3971.40.000000e+002232/2274 (98%)EPI294582A/duck/Egypt/3982-12/2010 (A/H5N1) segment 2 (PB1)3960.30.000000e+002230/2274 (98%)EPI538765A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 2 (PB1)3958.50.000000e+002195/2222 (98%)EPI294468A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 2 (PB1)3954.80.000000e+002229/2274 (98%)EPI372819A/Egypt/N02038/2010 (A/H5N1) segment 2 (PB1)3949.30.000000e+002228/2274 (97%)EPI390990A/chicken/Egypt/1029/2010 (A/H5N1) segment 2 (PB1)3947.40.000000e+002213/2252 (98%)EPI372727A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3947.40.000000e+002227/2274 (97%)EPI550484A/chicken/Egypt/14VIR784-11-133AL/2013 (A/H5N1) segment 2 (PB1)3945.60.000000e+002208/2245 (98%)EPI372701A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3943.70.000000e+002227/2274 (97%)EPI372677A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3943.70.000000e+002227/2274 (97%)EPI372765A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3938.20.000000e+002226/2274 (97%)EPI294568A/chicken/Egypt/3982-5/2010 (A/H5N1) segment 2 (PB1)3938.20.000000e+002215/2257 (98%)EPI550491A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 2 (PB1)3934.50.000000e+002200/2236 (98%)EPI493064A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 2 (PB1)3921.60.000000e+002223/2274 (97%)EPI372771A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3921.60.000000e+002223/2274 (97%)EPI372783A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3916.00.000000e+002222/2274 (97%)EPI372789A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3912.30.000000e+002222/2275 (97%)EPI372695A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3910.50.000000e+002221/2274 (97%)EPI372689A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3910.50.000000e+002221/2274 (97%)EPI372807A/Egypt/N01644/2010 (A/H5N1) segment 2 (PB1)3904.90.000000e+002220/2274 (97%)EPI372795A/Egypt/N11981/2009 (A/H5N1) segment 2 (PB1)3899.40.000000e+002219/2274 (97%)EPI372751A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3899.40.000000e+002219/2274 (97%)EPI372777A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3895.70.000000e+002218/2274 (97%)EPI538757A/chicken/Egypt/13VIR-2962-24/2013 (A/H5N1) segment 2 (PB1)3892.00.000000e+002183/2222 (98%)EPI372759A/Egypt/2752-NAMRU3/2009 (A/H5N1) segment 2 (PB1)3888.30.000000e+002216/2274 (97%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642544A/Egypt/682/2015 (A/H5N1) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI574123A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573257A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI574386A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI584776A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI574130A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI573265A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI557175A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 1 (PB2)4128.40.000000e+002266/2281 (99%)EPI557191A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 1 (PB2)4106.20.000000e+002262/2281 (99%)EPI493442A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 1 (PB2)4106.20.000000e+002263/2282 (99%)EPI557215A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 1 (PB2)4100.70.000000e+002262/2282 (99%)EPI493502A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 1 (PB2)4095.10.000000e+002261/2282 (99%)EPI557207A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 1 (PB2)4078.50.000000e+002258/2282 (98%)EPI557199A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 1 (PB2)4073.00.000000e+002257/2282 (98%)EPI493352A/duck/Egypt/M2583D/2010 (A/H5N1) segment 1 (PB2)4050.80.000000e+002253/2282 (98%)EPI493275A/duck/Egypt/M2583A/2010 (A/H5N1) segment 1 (PB2)4050.80.000000e+002253/2282 (98%)EPI493053A/duck/Egypt/M2583C/2010 (A/H5N1) segment 1 (PB2)4050.80.000000e+002253/2282 (98%)EPI574378A/Turkey/Egypt/14139FAOS/2014 (A/H5N1) segment 1 (PB2)4045.30.000000e+002251/2281 (98%)EPI493551A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 1 (PB2)4045.30.000000e+002252/2282 (98%)EPI493528A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 1 (PB2)4039.70.000000e+002251/2282 (98%)EPI493494A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 1 (PB2)4039.70.000000e+002251/2282 (98%)EPI493190A/duck/Egypt/M2583B/2010 (A/H5N1) segment 1 (PB2)4039.70.000000e+002251/2282 (98%)EPI493122A/duck/Egypt/M3075B/2011 (A/H5N1) segment 1 (PB2)4039.70.000000e+002251/2282 (98%)EPI493391A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 1 (PB2)4034.20.000000e+002250/2282 (98%)EPI493345A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 1 (PB2)4034.20.000000e+002250/2282 (98%)EPI493395A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 1 (PB2)4028.70.000000e+002249/2282 (98%)EPI372848A/Egypt/N0544/2011 (A/H5N1) segment 1 (PB2)4028.70.000000e+002249/2282 (98%)EPI493339A/goose/Egypt/M2794A/2011 (A/H5N1) segment 1 (PB2)4023.10.000000e+002248/2282 (98%)EPI493203A/goose/Egypt/M2788A/2011 (A/H5N1) segment 1 (PB2)4023.10.000000e+002248/2282 (98%)EPI372912A/Egypt/N7592/2011 (A/H5N1) segment 1 (PB2)4023.10.000000e+002248/2282 (98%)EPI372864A/Egypt/N6658/2011 (A/H5N1) segment 1 (PB2)4019.40.000000e+002247/2282 (98%)EPI493475A/goose/Egypt/M2794E/2011 (A/H5N1) segment 1 (PB2)4017.60.000000e+002247/2282 (98%)EPI372888A/Egypt/N6828/2011 (A/H5N1) segment 1 (PB2)4017.60.000000e+002247/2282 (98%)EPI372880A/Egypt/N6774/2011 (A/H5N1) segment 1 (PB2)4017.60.000000e+002247/2282 (98%)EPI372812A/Egypt/N01982/2010 (A/H5N1) segment 1 (PB2)4017.60.000000e+002247/2282 (98%)EPI550506A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 1 (PB2)4013.90.000000e+002231/2259 (98%)EPI493359A/goose/Egypt/M2788E/2011 (A/H5N1) segment 1 (PB2)4012.00.000000e+002246/2282 (98%)EPI372928A/Egypt/N09966/2011 (A/H5N1) segment 1 (PB2)4012.00.000000e+002246/2282 (98%)EPI372904A/Egypt/N7562/2011 (A/H5N1) segment 1 (PB2)4012.00.000000e+002246/2282 (98%)EPI372872A/Egypt/N0677/2011 (A/H5N1) segment 1 (PB2)4012.00.000000e+002246/2282 (98%)EPI538788A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 1 (PB2)4008.40.000000e+002207/2225 (99%)EPI538796A/chicken/Egypt/13VIR-2962-199/2013 (A/H5N1) segment 1 (PB2)4006.50.000000e+002206/2224 (99%)EPI372952A/Egypt/N14976/2011 (A/H5N1) segment 1 (PB2)4006.50.000000e+002245/2282 (98%)EPI372944A/Egypt/N11470/2011 (A/H5N1) segment 1 (PB2)4006.50.000000e+002245/2282 (98%)EPI372920A/Egypt/N7724/2011 (A/H5N1) segment 1 (PB2)4006.50.000000e+002245/2282 (98%)EPI372856A/Egypt/N6322/2011 (A/H5N1) segment 1 (PB2)4006.50.000000e+002245/2282 (98%)EPI372824A/Egypt/N02127/2010 (A/H5N1) segment 1 (PB2)4006.50.000000e+002245/2282 (98%)EPI372732A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 1 (PB2)4006.50.000000e+002245/2282 (98%)EPI550499A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 1 (PB2)4004.70.000000e+002189/2199 (99%)EPI538804A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 1 (PB2)4004.70.000000e+002205/2223 (99%)EPI493415A/duck/Egypt/Q4596D/2012 (A/H5N1) segment 1 (PB2)4001.00.000000e+002244/2282 (98%)EPI493165A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 1 (PB2)4001.00.000000e+002244/2282 (98%)EPI493149A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 1 (PB2)4001.00.000000e+002244/2282 (98%)EPI372936A/Egypt/N11126/2011 (A/H5N1) segment 1 (PB2)4001.00.000000e+002244/2282 (98%)EPI538812A/chicken/Egypt/13VIR-2962-203/2013 (A/H5N1) segment 1 (PB2)3999.10.000000e+002202/2220 (99%)EPI493420A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 1 (PB2)3995.40.000000e+002243/2282 (98%)EPI493400A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 1 (PB2)3995.40.000000e+002243/2282 (98%)EPI493076A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 1 (PB2)3995.40.000000e+002243/2282 (98%)EPI372712A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3993.60.000000e+002242/2282 (98%)EPI372960A/Egypt/N10621/2011 (A/H5N1) segment 1 (PB2)3989.90.000000e+002242/2282 (98%)EPI538820A/chicken/Egypt/13VIR-2962-204/2013 (A/H5N1) segment 1 (PB2)3978.80.000000e+002198/2219 (99%)EPI493063A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 1 (PB2)3978.80.000000e+002240/2282 (98%)EPI538764A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 1 (PB2)3962.20.000000e+002199/2225 (98%)EPI372726A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3962.20.000000e+002237/2282 (98%)EPI372830A/Egypt/N02554/2010 (A/H5N1) segment 1 (PB2)3958.50.000000e+002236/2282 (97%)EPI372706A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3951.10.000000e+002235/2282 (97%)EPI294481A/chicken/Egypt/1553-13/2010 (A/H5N1) segment 1 (PB2)3949.30.000000e+002214/2251 (98%)EPI538780A/duck/Egypt/13VIR-2962-196/2013 (A/H5N1) segment 1 (PB2)3945.60.000000e+002192/2219 (98%)EPI538772A/duck/Egypt/13VIR-2962-195/2013 (A/H5N1) segment 1 (PB2)3945.60.000000e+002192/2219 (98%)EPI372836A/Egypt/N03071/2010 (A/H5N1) segment 1 (PB2)3945.60.000000e+002234/2282 (97%)EPI372818A/Egypt/N02038/2010 (A/H5N1) segment 1 (PB2)3945.60.000000e+002234/2282 (97%)EPI294609A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 1 (PB2)3943.70.000000e+002219/2260 (98%)EPI557183A/chicken/Egypt/NLQP2AL-AR749/2013 (A/H5N1) segment 1 (PB2)3934.50.000000e+002233/2283 (97%)EPI557167A/chicken/Egypt/NLQP7FL-AR747/2013 (A/H5N1) segment 1 (PB2)3934.50.000000e+002233/2283 (97%)EPI493561A/duck/Egypt/S6419C/2012 (A/H5N1) segment 1 (PB2)3928.90.000000e+002232/2283 (97%)EPI493031A/turkey/Egypt/S6405A/2012 (A/H5N1) segment 1 (PB2)3928.90.000000e+002232/2283 (97%)EPI372700A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3923.40.000000e+002230/2282 (97%)EPI372694A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3923.40.000000e+002230/2282 (97%)EPI372688A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3923.40.000000e+002230/2282 (97%)EPI294658A/poultry/Egypt/3982-56/2010 (A/H5N1) segment 1 (PB2)3919.70.000000e+002204/2244 (98%)EPI372676A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3917.90.000000e+002229/2282 (97%)EPI294651A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 1 (PB2)3914.20.000000e+002203/2244 (98%)EPI372764A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3910.50.000000e+002227/2282 (97%)EPI372770A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3906.80.000000e+002228/2283 (97%)EPI372750A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3906.80.000000e+002227/2282 (97%)EPI372782A/Egypt/4394-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3904.90.000000e+002226/2282 (97%)EPI294467A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 1 (PB2)3899.40.000000e+002209/2257 (97%)EPI372806A/Egypt/N01644/2010 (A/H5N1) segment 1 (PB2)3895.70.000000e+002225/2282 (97%)EPI372794A/Egypt/N11981/2009 (A/H5N1) segment 1 (PB2)3895.70.000000e+002225/2282 (97%)EPI372788A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3890.20.000000e+002224/2282 (97%)EPI372682A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3890.20.000000e+002224/2282 (97%)EPI620895A/chicken/Egypt/102d/2010 (A/H5N1) segment 1 (PB2)3884.60.000000e+002224/2283 (97%)EPI372842A/Egypt/N03072/2010 (A/H5N1) segment 1 (PB2)3884.60.000000e+002223/2282 (97%)EPI372800A/Egypt/N01360/2010 (A/H5N1) segment 1 (PB2)3873.50.000000e+002220/2281 (97%)EPI294574A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 1 (PB2)3864.30.000000e+002172/2211 (98%)EPI372758A/Egypt/2752-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3856.90.000000e+002220/2284 (97%)EPI372896A/Egypt/N0423/2011 (A/H5N1) segment 1 (PB2)3851.40.000000e+002217/2282 (97%)EPI372776A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 1 (PB2)3851.40.000000e+002216/2282 (97%)EPI294546A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 1 (PB2)3851.40.000000e+002169/2210 (98%)EPI372578A/Egypt/394-NAMRU3/2007 (A/H5N1) segment 1 (PB2)3840.30.000000e+002216/2283 (97%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642539A/Egypt/682/2015 (A/H5N1) segment 7 (MP)1810.80.000000e+00982/982 (100%)EPI574128A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 7 (MP)1810.80.000000e+00981/982 (99%)EPI573255A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI574384A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 7 (MP)1801.60.000000e+00979/982 (99%)EPI574135A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI573263A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI550494A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI493357A/duck/Egypt/M2583D/2010 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI493328A/duck/Egypt/M2583A/2010 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI493195A/duck/Egypt/M2583B/2010 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI493058A/duck/Egypt/M2583C/2010 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI393788A/Egypt/N02137/2012 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI372854A/Egypt/N6322/2011 (A/H5N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI584781A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 7 (MP)1772.10.000000e+00976/984 (99%)EPI557173A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 7 (MP)1772.10.000000e+00972/979 (99%)EPI493566A/duck/Egypt/S6419C/2012 (A/H5N1) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI493447A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI493036A/turkey/Egypt/S6405A/2012 (A/H5N1) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI398179A/chicken/Giza/CAI26/2011 (A/H5) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI372846A/Egypt/N0544/2011 (A/H5N1) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI557213A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 7 (MP)1766.50.000000e+00971/979 (99%)EPI550501A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI538778A/duck/Egypt/13VIR-2962-196/2013 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI493507A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI493472A/goose/Egypt/M2794E/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI493364A/goose/Egypt/M2788E/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI438244A/duck/Egypt/M3075B/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI438242A/goose/Egypt/M2788A/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI438240A/goose/Egypt/M2794A/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI374700A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372910A/Egypt/N7592/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372886A/Egypt/N6828/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372878A/Egypt/N6774/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372870A/Egypt/N0677/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372862A/Egypt/N6658/2011 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372730A/Egypt/9174-NAMRU3/2009 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI372710A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI294607A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 7 (MP)1764.70.000000e+00972/981 (99%)EPI574376A/Turkey/Egypt/14139FAOS/2014 (A/H5N1) segment 7 (MP)1762.80.000000e+00972/982 (98%)EPI557189A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 7 (MP)1761.00.000000e+00970/979 (99%)EPI557181A/chicken/Egypt/NLQP2AL-AR749/2013 (A/H5N1) segment 7 (MP)1761.00.000000e+00970/979 (99%)EPI557165A/chicken/Egypt/NLQP7FL-AR747/2013 (A/H5N1) segment 7 (MP)1761.00.000000e+00970/979 (99%)EPI538802A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI493500A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI493418A/duck/Egypt/Q4596D/2012 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI493170A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI493155A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI493068A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI393224A/chicken/Egypt/1034/2010 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI372926A/Egypt/N09966/2011 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI372902A/Egypt/N7562/2011 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI372816A/Egypt/N02038/2010 (A/H5N1) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI557197A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 7 (MP)1755.40.000000e+00969/979 (98%)EPI538818A/chicken/Egypt/13VIR-2962-204/2013 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI538786A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 7 (MP)1755.40.000000e+00969/979 (98%)EPI493532A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI393785A/Egypt/N00951/2012 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI393174A/chicken/Egypt/11669S/2011 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI372918A/Egypt/N7724/2011 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI372828A/Egypt/N02554/2010 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI372822A/Egypt/N02127/2010 (A/H5N1) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI538770A/duck/Egypt/13VIR-2962-195/2013 (A/H5N1) segment 7 (MP)1753.60.000000e+00967/977 (98%)EPI294649A/poultry/Egypt/3982-55/2010 (A/H5N1) segment 7 (MP)1753.60.000000e+00970/981 (98%)EPI294465A/chicken/Egypt/1553-1/2010 (A/H5N1) segment 7 (MP)1753.60.000000e+00970/981 (98%)EPI557205A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 7 (MP)1749.90.000000e+00968/979 (98%)EPI493433A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI493425A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI493405A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI493121A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI438243A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI438239A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI372958A/Egypt/N10621/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI372934A/Egypt/N11126/2011 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI372834A/Egypt/N03071/2010 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI372704A/Egypt/0585-NAMRU3/2009 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI372698A/Egypt/0001-NAMRU3/2009 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI372674A/Egypt/0605-NAMRU3/2009 (A/H5N1) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI294628A/chicken/Egypt/3982-44/2010 (A/H5N1) segment 7 (MP)1748.10.000000e+00969/981 (98%)EPI538762A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 7 (MP)1746.20.000000e+00966/977 (98%)EPI550487A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI550480A/chicken/Egypt/14VIR784-11-133AL/2013 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI393216A/chicken/Egypt/0894-NLQP/2008 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372950A/Egypt/N14976/2011 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372942A/Egypt/N11470/2011 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372774A/Egypt/4396-NAMRU3/2009 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372768A/Egypt/3228-NAMRU3/2009 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372724A/Egypt/9539-NAMRU3/2009 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372692A/Egypt/2039-NAMRU3/2009 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI372686A/Egypt/1310-NAMRU3/2009 (A/H5N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI393225A/chicken/Egypt/0987-NLQP/2009 (A/H5N1) segment 7 (MP)1738.80.000000e+00968/982 (98%)EPI393175A/chicken/Egypt/11316SS/2011 (A/H5N1) segment 7 (MP)1738.80.000000e+00968/982 (98%)EPI372810A/Egypt/N01982/2010 (A/H5N1) segment 7 (MP)1738.80.000000e+00968/982 (98%)EPI372786A/Egypt/3450-NAMRU3/2009 (A/H5N1) segment 7 (MP)1738.80.000000e+00968/982 (98%)EPI372762A/Egypt/2563-NAMRU3/2009 (A/H5N1) segment 7 (MP)1738.80.000000e+00968/982 (98%)EPI372748A/Egypt/4935-NAMRU3/2009 (A/H5N1) segment 7 (MP)1738.80.000000e+00968/982 (98%)EPI294572A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 7 (MP)1735.10.000000e+00958/968 (98%)EPI372680A/Egypt/0606-NAMRU3/2009 (A/H5N1) segment 7 (MP)1733.30.000000e+00967/982 (98%)EPI538794A/chicken/Egypt/13VIR-2962-199/2013 (A/H5N1) segment 7 (MP)1731.40.000000e+00956/966 (98%)EPI294544A/chicken/Egypt/3982-2/2010 (A/H5N1) segment 7 (MP)1731.40.000000e+00962/975 (98%)EPI372804A/Egypt/N01644/2010 (A/H5N1) segment 7 (MP)1727.70.000000e+00968/984 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642538A/Egypt/682/2015 (A/H5N1) segment 6 (NA)2490.40.000000e+001350/1350 (100%)EPI574134A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 6 (NA)2484.90.000000e+001348/1350 (99%)EPI574127A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 6 (NA)2479.30.000000e+001347/1350 (99%)EPI573259A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 6 (NA)2479.30.000000e+001345/1347 (99%)EPI573251A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 6 (NA)2473.80.000000e+001344/1347 (99%)EPI584780A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 6 (NA)2468.20.000000e+001345/1350 (99%)EPI573245A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 6 (NA)2468.20.000000e+001343/1347 (99%)EPI557137A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 6 (NA)2462.70.000000e+001342/1347 (99%)EPI623714A/turkey/Jenin/39/2015 (A/H5N1) segment 6 (NA)2457.20.000000e+001343/1350 (99%)EPI573249A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 6 (NA)2457.20.000000e+001341/1347 (99%)EPI573247A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 6 (NA)2457.20.000000e+001341/1347 (99%)EPI573267A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 6 (NA)2451.60.000000e+001340/1347 (99%)EPI573243A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 6 (NA)2446.10.000000e+001339/1347 (99%)EPI623713A/chicken/Qalqilya/333/2015 (A/H5N1) segment 6 (NA)2440.50.000000e+001341/1351 (99%)EPI623706A/chicken/Qalqilya/53/2015 (A/H5N1) segment 6 (NA)2440.50.000000e+001341/1351 (99%)EPI574388A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 6 (NA)2440.50.000000e+001338/1347 (99%)EPI623712A/turkey/Israel/274/2015 (A/H5N1) segment 6 (NA)2429.50.000000e+001339/1351 (99%)EPI623708A/chicken/Israel/156/2015 (A/H5N1) segment 6 (NA)2429.50.000000e+001339/1351 (99%)EPI623707A/chicken/Israel/88/2015 (A/H5N1) segment 6 (NA)2429.50.000000e+001339/1351 (99%)EPI623711A/turkey/Israel/209/2015 (A/H5N1) segment 6 (NA)2423.90.000000e+001338/1351 (99%)EPI623710A/turkey/Israel/188/2015 (A/H5N1) segment 6 (NA)2423.90.000000e+001339/1352 (99%)EPI557177A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 6 (NA)2418.40.000000e+001334/1347 (99%)EPI538814A/chicken/Egypt/13VIR-2962-203/2013 (A/H5N1) segment 6 (NA)2418.40.000000e+001335/1349 (98%)EPI538798A/chicken/Egypt/13VIR-2962-199/2013 (A/H5N1) segment 6 (NA)2418.40.000000e+001335/1349 (98%)EPI493506A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 6 (NA)2418.40.000000e+001336/1350 (98%)EPI538790A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 6 (NA)2416.50.000000e+001335/1349 (98%)EPI557193A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 6 (NA)2412.80.000000e+001333/1347 (98%)EPI550502A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 6 (NA)2412.80.000000e+001334/1349 (98%)EPI504999A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 6 (NA)2405.50.000000e+001333/1349 (98%)EPI504998A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 6 (NA)2405.50.000000e+001333/1349 (98%)EPI504997A/chicken/Egypt/BSU-FA-M28/2012 (H5N1) (A/H5N1) segment 6 (NA)2405.50.000000e+001333/1349 (98%)EPI536596A/Egypt/N01753/2014 (A/H5N1) segment 6 (NA)2401.80.000000e+001333/1350 (98%)EPI493446A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 6 (NA)2401.80.000000e+001333/1350 (98%)EPI550508A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 6 (NA)2399.90.000000e+001332/1349 (98%)EPI557135A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 6 (NA)2396.20.000000e+001330/1347 (98%)EPI538774A/duck/Egypt/13VIR-2962-195/2013 (A/H5N1) segment 6 (NA)2396.20.000000e+001331/1349 (98%)EPI537619A/Egypt/N01754/2014 (A/H5N1) segment 6 (NA)2396.20.000000e+001332/1350 (98%)EPI493559A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 6 (NA)2396.20.000000e+001332/1350 (98%)EPI538782A/duck/Egypt/13VIR-2962-196/2013 (A/H5N1) segment 6 (NA)2394.40.000000e+001331/1349 (98%)EPI493499A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 6 (NA)2390.70.000000e+001331/1350 (98%)EPI623709A/turkey/Israel/174/2015 (A/H5N1) segment 6 (NA)2385.10.000000e+001333/1353 (98%)EPI574380A/Turkey/Egypt/14139FAOS/2014 (A/H5N1) segment 6 (NA)2385.10.000000e+001328/1347 (98%)EPI557217A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 6 (NA)2385.10.000000e+001328/1347 (98%)EPI557201A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 6 (NA)2385.10.000000e+001328/1347 (98%)EPI493432A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 6 (NA)2385.10.000000e+001330/1350 (98%)EPI493398A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 6 (NA)2385.10.000000e+001330/1350 (98%)EPI372850A/Egypt/N0544/2011 (A/H5N1) segment 6 (NA)2385.10.000000e+001330/1350 (98%)EPI336859A/turkey/Jenin/341/2011 (A/H5N1) segment 6 (NA)2385.10.000000e+001330/1350 (98%)EPI387566A/duck/Egypt/1113SD/2011 (A/H5N1) segment 6 (NA)2383.30.000000e+001329/1349 (98%)EPI372890A/Egypt/N6828/2011 (A/H5N1) segment 6 (NA)2381.50.000000e+001329/1350 (98%)EPI538822A/chicken/Egypt/13VIR-2962-204/2013 (A/H5N1) segment 6 (NA)2379.60.000000e+001325/1345 (98%)EPI493356A/duck/Egypt/M2583D/2010 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI493348A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI493342A/goose/Egypt/M2794A/2011 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI493279A/duck/Egypt/M2583A/2010 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI493207A/goose/Egypt/M2788A/2011 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI493194A/duck/Egypt/M2583B/2010 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI493056A/duck/Egypt/M2583C/2010 (A/H5N1) segment 6 (NA)2379.60.000000e+001329/1350 (98%)EPI372882A/Egypt/N6774/2011 (A/H5N1) segment 6 (NA)2375.90.000000e+001328/1350 (98%)EPI493363A/goose/Egypt/M2788E/2011 (A/H5N1) segment 6 (NA)2374.10.000000e+001328/1350 (98%)EPI493127A/duck/Egypt/M3075B/2011 (A/H5N1) segment 6 (NA)2374.10.000000e+001328/1350 (98%)EPI372866A/Egypt/N6658/2011 (A/H5N1) segment 6 (NA)2374.10.000000e+001328/1350 (98%)EPI538766A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 6 (NA)2372.20.000000e+001327/1349 (98%)EPI372874A/Egypt/N0677/2011 (A/H5N1) segment 6 (NA)2368.50.000000e+001327/1350 (98%)EPI255419A/Egypt/N14604/2009 (A/H5N1) segment 6 (NA)2368.50.000000e+001327/1350 (98%)EPI550495A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 6 (NA)2366.70.000000e+001302/1313 (99%)EPI538806A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 6 (NA)2366.70.000000e+001309/1324 (98%)EPI372922A/Egypt/N7724/2011 (A/H5N1) segment 6 (NA)2364.80.000000e+001326/1350 (98%)EPI393784A/Egypt/N00951/2012 (A/H5N1) segment 6 (NA)2363.00.000000e+001326/1350 (98%)EPI372962A/Egypt/N10621/2011 (A/H5N1) segment 6 (NA)2363.00.000000e+001326/1350 (98%)EPI387571A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 6 (NA)2361.10.000000e+001325/1349 (98%)EPI460396A/chicken/Egypt/1094/2010 (A/H5N1) segment 6 (NA)2359.30.000000e+001320/1342 (98%)EPI393787A/Egypt/N02137/2012 (A/H5N1) segment 6 (NA)2357.40.000000e+001325/1350 (98%)EPI372914A/Egypt/N7592/2011 (A/H5N1) segment 6 (NA)2357.40.000000e+001325/1350 (98%)EPI372858A/Egypt/N6322/2011 (A/H5N1) segment 6 (NA)2357.40.000000e+001325/1350 (98%)EPI338186A/harrier/Israel/531/2011 (A/H5N1) segment 6 (NA)2357.40.000000e+001326/1351 (98%)EPI255372A/Egypt/N02127/2010 (A/H5N1) segment 6 (NA)2357.40.000000e+001325/1350 (98%)EPI493067A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 6 (NA)2351.90.000000e+001324/1350 (98%)EPI372938A/Egypt/N11126/2011 (A/H5N1) segment 6 (NA)2351.90.000000e+001324/1350 (98%)EPI372930A/Egypt/N09966/2011 (A/H5N1) segment 6 (NA)2351.90.000000e+001324/1350 (98%)EPI372906A/Egypt/N7562/2011 (A/H5N1) segment 6 (NA)2351.90.000000e+001324/1350 (98%)EPI255399A/Egypt/N09174/2009 (A/H5N1) segment 6 (NA)2351.90.000000e+001324/1350 (98%)EPI255368A/Egypt/N01982/2010 (A/H5N1) segment 6 (NA)2351.90.000000e+001324/1350 (98%)EPI493471A/goose/Egypt/M2794E/2011 (A/H5N1) segment 6 (NA)2346.40.000000e+001323/1350 (98%)EPI372954A/Egypt/N14976/2011 (A/H5N1) segment 6 (NA)2346.40.000000e+001324/1351 (98%)EPI372946A/Egypt/N11470/2011 (A/H5N1) segment 6 (NA)2346.40.000000e+001324/1351 (98%)EPI294611A/chicken/Egypt/3982-20/2010 (A/H5N1) segment 6 (NA)2344.50.000000e+001322/1349 (97%)EPI294490A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 6 (NA)2344.50.000000e+001322/1349 (97%)EPI557209A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 6 (NA)2340.80.000000e+001321/1348 (97%)EPI493531A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 6 (NA)2340.80.000000e+001322/1350 (97%)EPI493169A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 6 (NA)2340.80.000000e+001322/1350 (97%)EPI493154A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 6 (NA)2340.80.000000e+001322/1350 (97%)EPI398580A/duck/Egypt/Q4596D/2012 (A/H5N1) segment 6 (NA)2340.80.000000e+001322/1350 (97%)EPI255387A/Egypt/N05049/2009 (A/H5N1) segment 6 (NA)2340.80.000000e+001322/1350 (97%)EPI255376A/Egypt/N02770/2010 (A/H5N1) segment 6 (NA)2340.80.000000e+001322/1350 (97%)EPI372714A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 6 (NA)2337.10.000000e+001321/1350 (97%)EPI550488A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 6 (NA)2333.40.000000e+001320/1349 (97%)EPI294576A/chicken/Egypt/3982-9/2010 (A/H5N1) segment 6 (NA)2333.40.000000e+001320/1349 (97%)EPI573331A/duck/Egypt/14154FAOS/2014 (A/H5N1) segment 6 (NA)2331.60.000000e+001277/1285 (99%)EPI387567A/goose/Egypt/1117SF/2011 (A/H5N1) segment 6 (NA)2331.60.000000e+001297/1315 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3122.00.000000e+001699/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3120.10.000000e+001697/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3110.90.000000e+001694/1699 (99%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3081.30.000000e+001692/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3081.30.000000e+001692/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3068.40.000000e+001669/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3055.50.000000e+001667/1674 (99%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)3044.40.000000e+001658/1663 (99%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)3037.00.000000e+001664/1674 (99%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)3031.50.000000e+001661/1671 (99%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001681/1702 (98%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)3022.20.000000e+001654/1663 (99%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1703 (98%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3016.70.000000e+001660/1674 (99%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)3011.20.000000e+001680/1705 (98%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)3005.60.000000e+001679/1705 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001680/1706 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001679/1705 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001679/1706 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001679/1706 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001679/1706 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001679/1706 (98%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001678/1706 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2989.00.000000e+001636/1644 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001677/1706 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001677/1706 (98%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2985.30.000000e+001675/1704 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2985.30.000000e+001675/1704 (98%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2983.50.000000e+001623/1627 (99%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2983.50.000000e+001675/1705 (98%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1703 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1703 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1704 (98%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001676/1706 (98%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001676/1706 (98%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2977.90.000000e+001677/1708 (98%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001675/1706 (98%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001675/1706 (98%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)

Isolate detailIsolate name: A/Egypt/682/2015 Isolate ID: EPI_ISL_195659 Passage details/history: E1 Type: A / H5N1 Lineage: Sample information Collection date: 2015-01-15 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: Egypt Additional location information: Patient age: 10 Year(s) Gender: Male Outbreak: Treatment: Specimen source: Institute information Originating lab: Ministry of Health and Population Sample ID given by the sample provider: Address: Ministry of Health and Population Central Health Laboratories 19 Sheikh Reehan Street - Abdeen Cairo Egypt Submitting lab: National Institute for Medical Research Sample ID given by the submitting laboratory: Authors: Address: National Institute for Medical Research The Ridgeway, Mill Hill London, NW7 1AA United Kingdom PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence PB2 A/Egypt/682/2015 2280 EPI642544 PB1 A/Egypt/682/2015 2274 EPI642543 PA A/Egypt/682/2015 2151 EPI642542 HA A/Egypt/682/2015 1704 EPI642537 NP A/Egypt/682/2015 1497 EPI642540 NA A/Egypt/682/2015 1350 EPI642538 MP A/Egypt/682/2015 982 EPI642539 NS A/Egypt/682/2015 823 EPI642541 Submitter information Submitter: Ermetal, Burcu Submission Date: 2015-09-08 Last modifier: Ermetal, Burcu Last modified: 2015-09-08 Address: National Institute for Medical Research The Ridgeway, Mill Hill London, NW7 1AA United KingdomAddress: National Institute for Medical Research The Ridgeway, Mill Hill London, NW7 1AA United Kingdom

Egypt MoH provides Mill Hill 2015 sample from 10M.