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niman

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  1. niman
    Introduction Vaccines against Ebola virus disease are an urgent international priority.1 However, at present, no licensed vaccines are available, despite promising results for several candidate vaccines in non-human primate studies and phase 1 trials.2–9 The recombinant, replication-competent vesicular stomatitis virus-based candidate vaccine expressing the glycoprotein of a Zaire Ebolavirus (rVSV-ZEBOV) causes a transient systemic infection after a single injection, and produces a rapid immune response against the Ebola virus surface protein.6,7 The Ebola ça Suffit (“Ebola this is enough”) clusterrandomised phase 3 trial is currently underway in Guinea to assess the efficacy of the rVSV-ZEBOV candidate vaccine for the prevention of Ebola virus disease. The trial uses a novel design for recruitment and estimation of vaccine efficacy,10 modelled on the ring vaccination approach used for smallpox eradication in the 1970s.11 Ring vaccination is defined as the vaccination of a cluster of individuals at high risk of infection, owing to their social or geographical connection to a confirmed index case. The pilot phase of the trial began on March 23, 2015, with the immediate vaccination of three non-randomised clusters; randomisation of clusters started on April 1, 2015. Herein, we report the interim results of this trial, describe the characteristics of the clusters and individuals enrolled in the trial, report the incidence of Ebola virus disease in the rings up to July 20, 2015, and provide preliminary estimates of vaccine safety and effectiveness.
  2. niman
    Funding WHO, with support from the Wellcome Trust (UK); Médecins Sans Frontières; the Norwegian Ministry of Foreign Affairs through the Research Council of Norway; and the Canadian Government through the Public Health Agency of Canada, Canadian Institutes of Health Research, International Development Research Centre, and Department of Foreign Affairs, Trade and Development.
  3. niman
    Interpretation The results of this interim analysis indicate that rVSV-ZEBOV might be highly efficacious and safe in preventing Ebola virus disease, and is most likely effective at the population level when delivered during an Ebola virus disease outbreak via a ring vaccination strategy.
  4. niman
    Findings Between April 1, 2015, and July 20, 2015, 90 clusters, with a total population of 7651 people were included in the planned interim analysis. 48 of these clusters (4123 people) were randomly assigned to immediate vaccination with rVSV-ZEBOV, and 42 clusters (3528 people) were randomly assigned to delayed vaccination with rVSV-ZEBOV. In the immediate vaccination group, there were no cases of Ebola virus disease with symptom onset at least 10 days after randomisation, whereas in the delayed vaccination group there were 16 cases of Ebola virus disease from seven clusters, showing a vaccine efficacy of 100% (95% CI 74·7–100·0; p=0·0036). No new cases of Ebola virus disease were diagnosed in vaccinees from the immediate or delayed groups from 6 days post-vaccination. At the cluster level, with the inclusion of all eligible adults, vaccine effectiveness was 75·1% (95% CI –7·1 to 94·2; p=0·1791), and 76·3% (95% CI –15·5 to 95·1; p=0·3351) with the inclusion of everyone (eligible or not eligible for vaccination). 43 serious adverse events were reported; one serious adverse event was judged to be causally related to vaccination (a febrile episode in a vaccinated participant, which resolved without sequelae). Assessment of serious adverse events is ongoing.
  5. niman
    Methods For this open-label, cluster-randomised ring vaccination trial, suspected cases of Ebola virus disease in Basse-Guinée (Guinea, west Africa) were independently ascertained by Ebola response teams as part of a national surveillance system. After laboratory confirmation of a new case, clusters of all contacts and contacts of contacts were defined and randomly allocated 1:1 to immediate vaccination or delayed (21 days later) vaccination with rVSV-ZEBOV (one dose of 2×10⁷ plaque-forming units, administered intramuscularly in the deltoid muscle). Adults (age ≥18 years) who were not pregnant or breastfeeding were eligible for vaccination. Block randomisation was used, with randomly varying blocks, stratified by location (urban vs rural) and size of rings (≤20 vs >20 individuals). The study is open label and masking of participants and field teams to the time of vaccination is not possible, but Ebola response teams and laboratory workers were unaware of allocation to immediate or delayed vaccination. Taking into account the incubation period of the virus of about 10 days, the prespecified primary outcome was laboratory-confirmed Ebola virus disease with onset of symptoms at least 10 days after randomisation. The primary analysis was per protocol and compared the incidence of Ebola virus disease in eligible and vaccinated individuals in immediate vaccination clusters with the incidence in eligible individuals in delayed vaccination clusters. This trial is registered with the Pan African Clinical Trials Registry, number PACTR201503001057193.
  6. niman
    Background A recombinant, replication-competent vesicular stomatitis virus-based vaccine expressing a surface glycoprotein of Zaire Ebolavirus (rVSV-ZEBOV) is a promising Ebola vaccine candidate. We report the results of an interim analysis of a trial of rVSV-ZEBOV in Guinea, west Africa.
  7. niman
    Efficacy and effectiveness of an rVSV-vectored vaccine expressing Ebola surface glycoprotein: interim results from the Guinea ring vaccination cluster-randomised trial Ana Maria Henao-Restrepo, Ira M Longini, Matthias Egger, Natalie E Dean, W John Edmunds, Anton Camacho, Miles W Carroll, Moussa Doumbia, Bertrand Draguez, Sophie Duraffour, Godwin Enwere, Rebecca Grais, Stephan Gunther, Stefanie Hossmann, Mandy Kader Kondé, Souleymane Kone, Eeva Kuisma, Myron M Levine, Sema Mandal, Gunnstein Norheim, Ximena Riveros, Aboubacar Soumah, Sven Trelle, Andrea S Vicari, Conall H Watson, Sakoba Kéïta, Marie Paule Kieny*, John-Arne Røttingen* http://www.thelancet.com/pb/assets/raw/Lancet/pdfs/S0140673615611175.pdf
  8. niman
    Lancet report describe initial results for rVSV Ebola vaccine in Guinea.
  9. niman
    Novel Influenza A Viruses:One human infection with a novel influenza A virus was reported by the state of Minnesota. The person was infected with an influenza A (H3N2) variant (H3N2v) virus and was hospitalized as a result of their illness. No human-to-human transmission has been identified and the case reported close contact with swine in the week prior to illness onset. Early identification and investigation of human infections with novel influenza A viruses are critical so that risk of infection can be more fully appreciated and appropriate public health measures can be taken. Additional information on influenza in swine, variant influenza infection in humans, and strategies to interact safely with swine can be found athttp://www.cdc.gov/flu/swineflu/index.htm. http://www.cdc.gov/flu/weekly/
  10. niman
    Hospitalized H3N2v Case In Minnesota
  11. niman
    APHIS Fujian H5N2 Update July 15 Report
  12. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620461A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620447A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620440A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620433A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620426A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620419A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620412A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI590689A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI587637A/chicken/Iowa/04-20/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620454A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590744A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590737A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590723A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590716A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI569366A/turkey/Washington/61-22/2014 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI586554A/chicken/BC/FAV24/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586538A/chicken/BC/FAV22/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586522A/chicken/BC/FAV20/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586514A/poultry/BC/FAV19/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585671A/baikal teal/Korea/2417/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585670A/baikal teal/Korea/2416/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585669A/baikal teal/Korea/2414/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585667A/baikal teal/Korea/2403/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585666A/baikal teal/Korea/2402/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585664A/baikal teal/Korea/1458/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585663A/baikal teal/Korea/1457/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585660A/baikal teal/Korea/1452/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585657A/baikal teal/Korea/1447/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585656A/baikal teal/Korea/1446/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585655A/baikal teal/Korea/1445/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585653A/baikal teal/Korea/1437/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585096A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI576474A/chicken/BC/FAV8/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569394A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569387A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569363A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569361A/chicken/Washington/61-9/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI568703A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI568700A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561713A/broiler duck/Korea/H31/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561701A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561694A/common teal/Korea/H455-30/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561685A/tundra swan/Korea/H411/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561678A/bean goose/Korea/H328/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561671A/mallard/Korea/H297/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561664A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561657A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561630A/mallard/Korea/H207/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561623A/breeder duck/Korea/H200/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561574A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561560A/Coot/Korea/H81/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561553A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561533A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561519A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561345A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561200A/broiler duck/Korea/H29/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI542634A/mallard/Korea/W452/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI509757A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI509712A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI590730A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590709A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI587525A/American wigeon/BC/050-31/2015 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586562A/chicken/BC/FAV25/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586546A/chicken/BC/FAV23/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586530A/chicken/BC/FAV21/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586505A/poultry/BC/FAV17/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585668A/baikal teal/Korea/2406/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585665A/baikal teal/Korea/2399/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585661A/baikal teal/Korea/1454/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585659A/baikal teal/Korea/1449/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585658A/baikal teal/Korea/1448/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585654A/baikal teal/Korea/1441/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI584083A/turkey/BC/FAV14/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561650A/breeder duck/Korea/H249/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561609A/broiler duck/Korea/H145/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561602A/broiler duck/Korea/H133/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561595A/breeder duck/Korea/H128/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561581A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561546A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561364A/bean goose/Korea/H40/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561357A/broiler duck/Korea/H48/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561352A/broiler duck/Korea/H47/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561191A/waterfowl/Korea/S005/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI554604A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI553471A/wigeon/Sakha/1/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI552750A/turkey/Germany/R2474-L00899/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI548628A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI548428A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590696A/chicken/Washington/3490-18/2015 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI588956A/goose/Taiwan/a015/2015 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI586497A/poultry/BC/FAV15/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585662A/baikal teal/Korea/1456/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI576481A/chicken/BC/FAV9/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI573642A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI573302A/turkey/BC/FAV10/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561637A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561616A/breeder duck/Korea/H158/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561567A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561512A/bean goose/Korea/H53/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI558013A/duck/England/36038/14 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)
  13. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620458A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620451A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620437A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620430A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620423A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620416A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620444A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI590741A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI587634A/chicken/Iowa/04-20/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620409A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590720A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590713A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586543A/chicken/BC/FAV23/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586510A/poultry/BC/FAV19/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI584080A/turkey/BC/FAV14/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI573299A/turkey/BC/FAV10/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590700A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI590686A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586527A/chicken/BC/FAV21/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586519A/chicken/BC/FAV20/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586502A/poultry/BC/FAV17/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI576471A/chicken/BC/FAV8/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI569384A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI569365A/turkey/Washington/61-22/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586559A/chicken/BC/FAV25/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586535A/chicken/BC/FAV22/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586494A/poultry/BC/FAV15/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI576478A/chicken/BC/FAV9/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI590734A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI586551A/chicken/BC/FAV24/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI573277A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI573272A/chicken/Washington/61-9/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI590727A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI590693A/chicken/Washington/3490-18/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI585093A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI526421A/American green-winged teal/Ohio/13OS2086/2013 (A/H6N8) segment 5 (NP)2671.40.000000e+001480/1497 (98%)EPI526348A/American green-winged teal/Ohio/13OS2084/2013 (A/H6N8) segment 5 (NP)2671.40.000000e+001480/1497 (98%)EPI616371A/blue-winged teal/Illinois/12OS2929/2012 (A/H3N8) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI513134A/mallard/Wisconsin/11OS4085/2011 (A/H0) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512973A/blue-winged teal/Wisconsin/11OS3052/2011 (A/H3N2) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512391A/northern pintail/Illinois/11OS4796/2011 (A/H5N3) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512368A/northern shoveler/Illinois/11OS4707/2011 (A/H4N6) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI616435A/mallard/Illinois/12OS5130/2012 (A/H1N1) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI616391A/northern shoveler/Illinois/12OS5138/2012 (A/H1N1) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI513005A/northern shoveler/Wisconsin/11OS4110/2011 (A/H4N6) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI512353A/mallard/Illinois/11OS4420/2011 (A/H2N3) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI616291A/blue-winged teal/Ohio/12OS4593/2012 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI526332A/American green-winged teal/Ohio/13OS2060/2013 (A/H6N8) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI512695A/mallard/Wisconsin/11OS4309/2011 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI616346A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI512616A/mallard/Wisconsin/11OS4310/2011 (A/H4N6) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI418744A/wood duck/Wisconsin/10OS2778/2010 (A/H3N8) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI418737A/mallard/Wisconsin/10OS2773/2010 (A/H3N8) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI616351A/blue-winged teal/Illinois/12OS2986/2012 (A/H3N8) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI616186A/blue-winged teal/Ohio/12OS2229/2012 (A/H3N6) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI596207A/mallard/Maryland/13OS3035/2014 (A/H10N7) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI585180A/redhead/Ohio/13OS0406/2013 (A/H7N3) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI512928A/mallard/Illinois/11OS4121/2011 (A/H6N2) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI616467A/mallard/Illinois/12OS5080/2012 (A/H5N1) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI512749A/northern shoveler/Wisconsin/11OS3013/2011 (A/H4N8) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI449581A/green-winged teal/Minnesota/Sg-01000/2008 (A/H3N6) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI449553A/mallard/Minnesota/Sg-00930/2008 (A/H11N9) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI419628A/mallard/Missouri/10MO084/2010 (A/H5N9) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI419506A/American green-winged teal/Mississippi/11OS247/2011 (A/H0) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI594842A/mallard/Maryland/13OS3019/2014 (A/H0) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI475450A/northern shoveler/Minnesota/Sg-00655/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI468600A/northern shoveler/Minnesota/Sg-00651/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI450064A/red-necked grebe/Minnesota/AI10-2528/2010 (A/H4N8) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI449397A/northern shoveler/Minnesota/Sg-00665/2008 (A/H0) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI448589A/mallard/Minnesota/Sg-00620/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI419491A/northern shoverl/Mississippi/11OS145/2011 (A/H7N9) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI419169A/mallard/Wisconsin/10OS3866/2010 (A/H3N6) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI418903A/blue-winged teal/Wisconsin/10OS2862/2010 (A/H3N2) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI334171A/mallard/Illinois/3974/2009 (A/H5N2) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI468579A/mallard/Minnesota/Sg-00627/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI468414A/mallard/Minnesota/Sg-00628/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI433780A/blue-winged teal/Nova Scotia/00067/2010 (A/H0) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI334289A/blue-winged teal/Wisconsin/2753/2009 (A/H4N6) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI328603A/northern shoveler/California/9079/2008 (A/H4N4) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI328067A/northern shoveler/California/10024/2008 (A/H4N4) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI616200A/blue-winged teal/Ohio/12OS2244/2012 (A/H4N6) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595979A/American black duck/Maryland/11OS3978/2012 (A/H2N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595972A/American black duck/Maryland/11OS3898/2012 (A/H2N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595958A/mallard/Maryland/11OS3829/2012 (A/H2N2) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI449387A/mallard/Minnesota/Sg-0617/2008 (A/H1N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI616227A/blue-winged teal/Ohio/12OS2123/2012 (A/H3N2) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI595965A/mallard/Maryland/11OS3833/2012 (A/H2N1) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI486895A/mallard/California/3471/2012 (A/H4N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI328083A/northern shoveler/California/9267/2008 (A/H4N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI616113A/blue-winged teal/Ohio/12OS2154/2012 (A/H3N2) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI328091A/northern shoveler/California/9228/2008 (A/H4N6) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI596179A/mallard/Maryland/12OS565/2012 (A/H2N2) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI526489A/blue-winged teal/Iowa/13OS2338/2013 (A/H4N6) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI513149A/northern shoveler/Wisconsin/11OS4631/2011 (A/H0) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI387206A/mallard/California/3134/2010 (A/H1N1) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI342993A/mallard/Alberta/507/2008 (A/H3N8) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI327399A/ring-necked duck/Ontario/15530/2005 (A/H3N2) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI596165A/environment/Maryland/12OS1510/2012 (A/H3N6) segment 5 (NP)2588.30.000000e+001465/1497 (97%)EPI596144A/environment/Maryland/12OS1505/2012 (A/H3N6) segment 5 (NP)2588.30.000000e+001465/1497 (97%)EPI596137A/environment/Maryland/12OS1502/2012 (A/H3N6) segment 5 (NP)2588.30.000000e+001465/1497 (97%)
  14. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620404A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620403A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620402A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620401A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620400A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI587639A/chicken/Iowa/04-20/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620399A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620398A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590476A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590475A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590472A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590469A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590473A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI569362A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI569360A/chicken/Washington/61-9/2014 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590471A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI573280A/turkey/Washington/61-22/2014 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI590474A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586557A/chicken/BC/FAV25/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586541A/chicken/BC/FAV23/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586525A/chicken/BC/FAV21/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586508A/poultry/BC/FAV19/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI585107A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI569382A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586533A/chicken/BC/FAV22/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI586517A/chicken/BC/FAV20/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI586500A/poultry/BC/FAV17/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI584078A/turkey/BC/FAV14/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI576173A/chicken/BC/FAV8/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI590470A/chicken/Washington/3490-18/2015 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586549A/chicken/BC/FAV24/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586492A/poultry/BC/FAV15/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI573292A/turkey/BC/FAV10/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI576174A/chicken/BC/FAV9/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI587520A/American wigeon/BC/050-31/2015 (A/H5N8) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI585103A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI569389A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI569370A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI569368A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI553207A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 3 (PA)3884.60.000000e+002135/2151 (99%)EPI588975A/duck/Taiwan/a068/2015 (A/H5N8) segment 3 (PA)3879.10.000000e+002132/2148 (99%)EPI588967A/chicken/Taiwan/a174/2015 (A/H5N3) segment 3 (PA)3879.10.000000e+002132/2148 (99%)EPI561686A/common teal/Korea/H455-30/2014 (A/H5N8) segment 3 (PA)3879.10.000000e+002134/2151 (99%)EPI588951A/goose/Taiwan/a015/2015 (A/H5N8) segment 3 (PA)3873.50.000000e+002132/2149 (99%)EPI585536A/baikal teal/Korea/2414/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585535A/baikal teal/Korea/2406/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585531A/baikal teal/Korea/1458/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585530A/baikal teal/Korea/1457/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585528A/baikal teal/Korea/1454/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585525A/baikal teal/Korea/1448/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585524A/baikal teal/Korea/1447/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585523A/baikal teal/Korea/1446/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI573637A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561712A/bean goose/Korea/H40/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561643A/tundra swan/Korea/H411/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561583A/broiler duck/Korea/H133/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561537A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561534A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561502A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561500A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561338A/broiler duck/Korea/H49/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561334A/broiler duck/Korea/H47/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI509694A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI509693A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585538A/baikal teal/Korea/2417/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585537A/baikal teal/Korea/2416/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585533A/baikal teal/Korea/2402/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585532A/baikal teal/Korea/2399/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585529A/baikal teal/Korea/1456/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561687A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561642A/bean goose/Korea/H328/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561640A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561588A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561587A/mallard/Korea/H207/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561586A/breeder duck/Korea/H200/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561584A/broiler duck/Korea/H145/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561582A/breeder duck/Korea/H128/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561501A/broiler duck/Korea/H65/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561335A/broiler duck/Korea/H48/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561333A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561193A/broiler duck/Korea/H31/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561192A/broiler duck/Korea/H29/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585534A/baikal teal/Korea/2403/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585527A/baikal teal/Korea/1452/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585526A/baikal teal/Korea/1449/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585522A/baikal teal/Korea/1445/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585521A/baikal teal/Korea/1441/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585520A/baikal teal/Korea/1437/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561641A/mallard/Korea/H297/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561639A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561585A/breeder duck/Korea/H158/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561539A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561538A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561536A/Coot/Korea/H81/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561535A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561499A/bean goose/Korea/H53/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561184A/waterfowl/Korea/S005/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI573645A/crane/Kagoshima/KU21/2014(H5N8) (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561638A/breeder duck/Korea/H249/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI542618A/mallard/Korea/W452/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)
  15. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620456A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI620435A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI620428A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI620421A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI620414A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI587631A/chicken/Iowa/04-20/2015 (A/H5N2) segment 2 (PB1)4194.90.000000e+002273/2274 (99%)EPI620442A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI590739A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620449A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI620407A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI590698A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI590684A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI586556A/chicken/BC/FAV25/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI586540A/chicken/BC/FAV23/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI586507A/poultry/BC/FAV19/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI584077A/turkey/BC/FAV14/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI573275A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI573270A/chicken/Washington/61-9/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI569364A/turkey/Washington/61-22/2014 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI590718A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI590711A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI590691A/chicken/Washington/3490-18/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586516A/chicken/BC/FAV20/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586499A/poultry/BC/FAV17/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586491A/poultry/BC/FAV15/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI585090A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI576469A/chicken/BC/FAV8/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI569381A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586548A/chicken/BC/FAV24/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI586532A/chicken/BC/FAV22/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI586524A/chicken/BC/FAV21/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI576476A/chicken/BC/FAV9/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI573297A/turkey/BC/FAV10/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI590732A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI590725A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI420193A/bufflehead/California/3118/2011 (A/H4N8) segment 2 (PB1)4045.30.000000e+002246/2274 (98%)EPI418616A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI512660A/wood duck/Wisconsin/11OS3443/2011 (A/H11N9) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI512230A/mallard/Arkansas/12OS179/2012 (A/H1N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI436582A/American green-winged teal/Interior Alaska/10BM05376R0/2010 (A/H3N8) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI418963A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI453910A/northern pintail/Interior Alaska/10BM10298R0/2010 (A/H3N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI436612A/northern shoveler/Interior Alaska/10BM05487R0/2010 (A/H3N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI436589A/northern shoveler/Interior Alaska/10BM05382R0/2010 (A/H3N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419953A/mallard/California/2559P/2011 (A/H5N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419909A/mallard/California/2552V/2011 (A/H4N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419869A/mallard/California/2542V/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419842A/mallard/California/2536P/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419835A/mallard/California/2535V/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419828A/mallard/California/2535P/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI387181A/mallard/California/2396/2010 (A/H5N2) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI512474A/blue-winged teal/Missouri/11OS2563/2011 (A/H12N4) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI452523A/northern pintail/Interior Alaska/10BM12413R0/2010 (A/H8N4) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI451651A/mallard/Interior Alaska/10BM07575R0/2010 (A/H7N3) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI436619A/northern shoveler/Interior Alaska/10BM05491R0/2010 (A/H3N8) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI433197A/mallard/Interior Alaska/10BM04564R1/2010 (A/H7N3) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420142A/mallard/California/2595V/2011 (A/H12N5) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420135A/mallard/California/2595P/2011 (A/H12N5) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420114A/mallard/California/2590V/2011 (A/H4N6) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420087A/mallard/California/2584V/2011 (A/H4N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420080A/mallard/California/2584P/2011 (A/H4N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419939A/mallard/California/2555V/2011 (A/H11N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419916A/mallard/California/2555P/2011 (A/H11N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419807A/mallard/California/2531V/2011 (A/H5N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419794A/mallard/California/2531P/2011 (A/H5N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419786A/mallard/California/2527V/2011 (A/H5N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420128A/mallard/California/2594V/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420121A/mallard/California/2594P/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420101A/mallard/California/2589V/2011 (A/H4N1) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420094A/mallard/California/2589P/2011 (A/H4N1) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420073A/mallard/California/2578V/2011 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI419855A/mallard/California/2536V/2011 (A/H5N1) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI419821A/mallard/California/2533V/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI419779A/mallard/California/2525P/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI418440A/mallard/California/2525V/2011 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI398563A/chicken/Jalisco/12283/2012 (A/H7N3) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI616068A/northern shoveler/Ohio/12OS3173/2012 (A/H12N5) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI513088A/mallard/Wisconsin/11OS4104/2011 (A/H1N2) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI512676A/mallard/Wisconsin/11OS3468/2011 (A/H2N3) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI419981A/mallard/California/2566P/2011 (A/H4N8) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI419974A/mallard/California/2563V/2011 (A/H4N6) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI419967A/mallard/California/2563P/2011 (A/H4N6) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI387271A/northern shoveler/California/3628/2011 (A/H10) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI527489A/blue-winged teal/TX/AI13-1028/2013 (A/H14N5) segment 2 (PB1)3995.40.000000e+002237/2274 (98%)EPI616276A/mallard/Ohio/12OS2351/2012 (A/H3N6) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI616160A/American green-winged teal/Ohio/12OS2128/2012 (A/H6N5) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI531395A/blue-winged teal/Guatemala/CIP049H105-15/2011 (A/H14N3) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI531387A/blue-winged teal/Guatemala/CIP049H106-62/2011 (A/H14N6) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI513151A/northern shoveler/Wisconsin/11OS4631/2011 (A/H0) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI512252A/northern shoveler/Mississippi/12OS231/2012 (A/H0) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI449635A/mallard/Minnesota/Sg-01034/2008 (A/H11N2) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI420214A/green-winged teal/California/123/2012 (A/H1N1) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI614841A/mallard/Ohio/12OS5400/2013 (A/H0) segment 2 (PB1)3984.30.000000e+002235/2274 (98%)EPI549555A/blue-winged teal/TX/AI13-1009/2013 (A/H11N3) segment 2 (PB1)3984.30.000000e+002235/2274 (98%)EPI512871A/northern pintail/Wisconsin/11OS3299/2011 (A/H4N6) segment 2 (PB1)3984.30.000000e+002235/2274 (98%)EPI512587A/American green-winged teal/Mississippi/11OS5869/2011 (A/H4N6) segment 2 (PB1)3984.30.000000e+002235/2274 (98%)EPI333682A/mallard/Ohio/1695/2009 (A/H4N6) segment 2 (PB1)3984.30.000000e+002235/2274 (98%)EPI617004A/mallard/Alberta/192/2010 (A/H7N3) segment 2 (PB1)3978.80.000000e+002234/2274 (98%)EPI616992A/mallard/Alberta/167/2010 (A/H7N3) segment 2 (PB1)3978.80.000000e+002234/2274 (98%)EPI616341A/mallard/Missouri/12OS5759/2012 (A/H11N9) segment 2 (PB1)3978.80.000000e+002234/2274 (98%)
  16. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620455A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620427A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620420A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620413A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI587630A/chicken/Iowa/04-20/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620448A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI620441A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI620434A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI590738A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI620406A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI590724A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI590683A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI586531A/chicken/BC/FAV22/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI586498A/poultry/BC/FAV17/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI586490A/poultry/BC/FAV15/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573296A/turkey/BC/FAV10/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573279A/turkey/Washington/61-22/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573274A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI590731A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590717A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586555A/chicken/BC/FAV25/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586547A/chicken/BC/FAV24/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586539A/chicken/BC/FAV23/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586523A/chicken/BC/FAV21/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI585089A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI584076A/turkey/BC/FAV14/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI576475A/chicken/BC/FAV9/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI576468A/chicken/BC/FAV8/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573269A/chicken/Washington/61-9/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI569380A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI569379A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590710A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590697A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586515A/chicken/BC/FAV20/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI585081A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569369A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569367A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586506A/poultry/BC/FAV19/2014 (A/H5N2) segment 1 (PB2)4180.10.000000e+002274/2280 (99%)EPI590690A/chicken/Washington/3490-18/2015 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI587519A/American wigeon/BC/050-31/2015 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI573283A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 1 (PB2)4172.70.000000e+002273/2280 (99%)EPI588949A/goose/Taiwan/a015/2015 (A/H5N8) segment 1 (PB2)4145.00.000000e+002268/2280 (99%)EPI553205A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 1 (PB2)4145.00.000000e+002268/2280 (99%)EPI585557A/baikal teal/Korea/2417/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585556A/baikal teal/Korea/2416/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585553A/baikal teal/Korea/2403/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585543A/baikal teal/Korea/1447/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585541A/baikal teal/Korea/1445/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561702A/bean goose/Korea/H40/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561672A/bean goose/Korea/H328/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561631A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561624A/mallard/Korea/H207/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561568A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561540A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561527A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561506A/bean goose/Korea/H53/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561358A/broiler duck/Korea/H49/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585554A/baikal teal/Korea/2406/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585551A/baikal teal/Korea/2399/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585550A/baikal teal/Korea/1458/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585548A/baikal teal/Korea/1456/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585546A/baikal teal/Korea/1452/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585545A/baikal teal/Korea/1449/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585544A/baikal teal/Korea/1448/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585539A/baikal teal/Korea/1437/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561610A/breeder duck/Korea/H158/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561603A/broiler duck/Korea/H145/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561575A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561561A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561513A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561353A/broiler duck/Korea/H48/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561339A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585555A/baikal teal/Korea/2414/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585549A/baikal teal/Korea/1457/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585542A/baikal teal/Korea/1446/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585540A/baikal teal/Korea/1441/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI573635A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561679A/tundra swan/Korea/H411/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561665A/mallard/Korea/H297/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561651A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561644A/breeder duck/Korea/H249/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561596A/broiler duck/Korea/H133/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561589A/breeder duck/Korea/H128/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561554A/Coot/Korea/H81/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561547A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561520A/broiler duck/Korea/H65/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561346A/broiler duck/Korea/H47/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561201A/broiler duck/Korea/H31/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561194A/broiler duck/Korea/H29/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561185A/waterfowl/Korea/S005/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI542630A/mallard/Korea/W452/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI509707A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI509702A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585547A/baikal teal/Korea/1454/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561695A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561658A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561617A/breeder duck/Korea/H200/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI517158A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561688A/common teal/Korea/H455-30/2014 (A/H5N8) segment 1 (PB2)4117.30.000000e+002263/2280 (99%)EPI547679A/Chicken/Netherlands/14015526/2014 (A/H5N8) segment 1 (PB2)4100.70.000000e+002260/2280 (99%)
  17. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620460A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620453A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620446A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620439A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620432A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620425A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620418A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI587636A/chicken/Iowa/04-20/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620411A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590743A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590736A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590729A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590722A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590708A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590688A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI568701A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI568698A/turkey/Washington/61-22/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI568697A/chicken/Washington/61-9/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590715A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586561A/chicken/BC/FAV25/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586553A/chicken/BC/FAV24/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586521A/chicken/BC/FAV20/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586504A/poultry/BC/FAV17/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585651A/baikal teal/Korea/2416/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585650A/baikal teal/Korea/2414/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585649A/baikal teal/Korea/2406/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585647A/baikal teal/Korea/2402/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585646A/baikal teal/Korea/2399/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585645A/baikal teal/Korea/1458/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585644A/baikal teal/Korea/1457/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585643A/baikal teal/Korea/1456/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585642A/baikal teal/Korea/1454/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585641A/baikal teal/Korea/1452/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585639A/baikal teal/Korea/1448/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585638A/baikal teal/Korea/1447/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585637A/baikal teal/Korea/1446/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585635A/baikal teal/Korea/1441/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585634A/baikal teal/Korea/1437/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585087A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI584082A/turkey/BC/FAV14/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI576480A/chicken/BC/FAV9/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI576473A/chicken/BC/FAV8/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573301A/turkey/BC/FAV10/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI569386A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561700A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561693A/common teal/Korea/H455-30/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561684A/tundra swan/Korea/H411/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561677A/bean goose/Korea/H328/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561670A/mallard/Korea/H297/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561656A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561649A/breeder duck/Korea/H249/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561636A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561629A/mallard/Korea/H207/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561622A/breeder duck/Korea/H200/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561601A/broiler duck/Korea/H133/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561594A/breeder duck/Korea/H128/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561580A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561573A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561566A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561559A/Coot/Korea/H81/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561552A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561532A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561525A/broiler duck/Korea/H65/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561511A/bean goose/Korea/H53/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561351A/broiler duck/Korea/H47/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561344A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561211A/broiler duck/Korea/H31/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561199A/broiler duck/Korea/H29/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561190A/waterfowl/Korea/S005/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI553211A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542633A/mallard/Korea/W452/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI517164A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509756A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509711A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI590695A/chicken/Washington/3490-18/2015 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI587524A/American wigeon/BC/050-31/2015 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586545A/chicken/BC/FAV23/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586537A/chicken/BC/FAV22/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586529A/chicken/BC/FAV21/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586513A/poultry/BC/FAV19/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586496A/poultry/BC/FAV15/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585652A/baikal teal/Korea/2417/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585648A/baikal teal/Korea/2403/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585640A/baikal teal/Korea/1449/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585636A/baikal teal/Korea/1445/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585095A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573289A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI569393A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568702A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568699A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561708A/bean goose/Korea/H40/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561663A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561615A/breeder duck/Korea/H158/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561608A/broiler duck/Korea/H145/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561545A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561518A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561363A/broiler duck/Korea/H49/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI561356A/broiler duck/Korea/H48/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI554603A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI553346A/chicken/Miyazaki/7/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)
  18. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI620459A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620452A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620445A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620438A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620431A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620424A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620417A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI587635A/chicken/Iowa/04-20/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620410A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590742A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590687A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590721A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI590714A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI586544A/chicken/BC/FAV23/2014 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI586511A/poultry/BC/FAV19/2014 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI584081A/turkey/BC/FAV14/2014 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI590735A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI590728A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI590701A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586520A/chicken/BC/FAV20/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI585094A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI573282A/turkey/Washington/61-22/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586552A/chicken/BC/FAV24/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586528A/chicken/BC/FAV21/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586495A/poultry/BC/FAV15/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI573278A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI573273A/chicken/Washington/61-9/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI569385A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586536A/chicken/BC/FAV22/2014 (A/H5N2) segment 6 (NA)2562.40.000000e+001402/1410 (99%)EPI586560A/chicken/BC/FAV25/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI586503A/poultry/BC/FAV17/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI576479A/chicken/BC/FAV9/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI576472A/chicken/BC/FAV8/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI573300A/turkey/BC/FAV10/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI590694A/chicken/Washington/3490-18/2015 (A/H5N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI418959A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI512135A/northern pintail/Mississippi/12OS420/2012 (A/H0) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI450007A/blue-winged teal/Louisiana/AI09-5234/2009 (A/H11N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI418609A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI332004A/blue-winged teal/Guatemala/CIP049-10/2009 (A/H11N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI331988A/blue-winged teal/Guatemala/CIP049-03/2009 (A/H11N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI512150A/northern shoveler/Mississippi/12OS456/2012 (A/H14N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI420145A/northern shoveler/California/3676/2010 (A/H8N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI419288A/American wigeon/Iowa/10OS2748/2010 (A/H2N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI418807A/American green-winged teal/Illinois/10OS3589/2010 (A/H6N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI418497A/blue-winged teal/Illinois/10OS3610/2010 (A/H6N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI418472A/mallard/Illinois/10OS3245/2010 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI387177A/mallard/California/2396/2010 (A/H5N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI333605A/American green-winged teal/Mississippi/404/2010 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI331996A/blue-winged teal/Guatemala/CIP049-11/2009 (A/H11N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI512531A/gadwall/Mississippi/11OS6084/2011 (A/H11N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI512524A/northern shoveler/Mississippi/11OS6077/2011 (A/H11N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI418721A/mallard/Wisconsin/10OS2538/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI512591A/northern shoveler/Mississippi/11OS5875/2011 (A/H5N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI419077A/mallard/Wisconsin/10OS3066/2010 (A/H6N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI616345A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419118A/mallard/Mississippi/10OS4593/2010 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI280744A/avian/Missouri/466554-6/2006 (A/H5N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI221406A/American green-winged teal/California/HKWF609/2007 (A/H5N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419654A/gadwall/Missouri/10MO0280/2010 (A/H5N2) segment 6 (NA)2422.10.000000e+001378/1411 (97%)EPI419647A/mallard/Missouri/10MO0253/2010 (A/H1N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI419111A/gadwall/Mississippi/10OS4531/2010 (A/H6N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI419138A/northern shoveler/Mississippi/10OS4526/2010 (A/H6N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI413459A/mallard/Ohio/11OS2213/2011 (A/H11N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328608A/northern shoveler/California/8855/2008 (A/H5N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI513011A/northern pintail/Wisconsin/11OS4111/2011 (A/H6N2) segment 6 (NA)2411.00.000000e+001376/1411 (97%)EPI328639A/mallard/California/11100/2008 (A/H11N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328582A/northern shoveler/California/9680/2008 (A/H6N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328476A/green-winged teal/California/11285/2008 (A/H0) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328156A/mallard/California/11353/2008 (A/H10N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328489A/green-winged teal/California/7972/2008 (A/H6N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI328108A/northern shoveler/California/9017/2008 (A/H11N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI419755A/northern shoveler/California/2815/2011 (A/H5N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI327900A/northern pintail/California/6791/2008 (A/H11N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI285601A/wild bird/Wisconsin/433163-1/2006 (A/H5N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI420032A/mallard/California/2571V/2011 (A/H0) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI420024A/mallard/California/2571P/2011 (A/H11N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI418643A/mallard/Illinois/10OS3249/2010 (A/H11N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI334262A/mallard/Iowa/3195/2009 (A/H0) segment 6 (NA)2394.40.000000e+001373/1411 (97%)EPI442430A/brant/Alaska/44332-426/2007 (A/H10N2) segment 6 (NA)2383.30.000000e+001370/1410 (97%)EPI285602A/wild bird/Wisconsin/439436-2/2006 (A/H5N2) segment 6 (NA)2383.30.000000e+001370/1410 (97%)EPI285592A/wild bird/Wisconsin/439436/2006 (A/H5N2) segment 6 (NA)2383.30.000000e+001370/1410 (97%)EPI328316A/mallard/California/6420/2008 (A/H6N2) segment 6 (NA)2377.80.000000e+001370/1411 (97%)EPI299469A/American green-winged teal/Wisconsin/08OS2291/2008 (A/H3N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI299389A/gadwall/Wisconsin/08OS2293/2008 (A/H3N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI299381A/American green-winged teal/Wisconsin/08OS2292/2008 (A/H3N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI280848A/wild bird/Minnesota/460613-12/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI449517A/mallard/Minnesota/Sg-00847/2008 (A/H0) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI413390A/mallard/Ohio/10OS1470/2010 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI413383A/mallard/Ohio/10OS1469/2010 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI413369A/mallard/Ohio/10OS1467/2010 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI285597A/mallard/NV/450206/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI285595A/mallard/NV/449567-4/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI285594A/mallard/NV/449567-2/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI280656A/mallard/Arkansas/473507-9/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI280544A/mallard/Nevada/450206-4/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI222394A/northern pintail/Saskatchewan/22910/2007 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI187901A/mallard/Minnesota/Sg-00129/2007 (A/H6N2) segment 6 (NA)2368.50.000000e+001360/1399 (97%)EPI449695A/green-winged teal/Minnesota/Sg-01073/2008 (A/H6N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI449653A/mallard/Minnesota/Sg-01040/2008 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)
  19. niman
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI620436A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI620457A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI620450A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI620443A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI620422A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI620415A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI620429A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI590740A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI620408A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI590726A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI586550A/chicken/BC/FAV24/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI586518A/chicken/BC/FAV20/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI586509A/poultry/BC/FAV19/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI584079A/turkey/BC/FAV14/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI573298A/turkey/BC/FAV10/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI590733A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI590719A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI590685A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI586542A/chicken/BC/FAV23/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI586534A/chicken/BC/FAV22/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001697/1705 (99%)EPI586526A/chicken/BC/FAV21/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI586493A/poultry/BC/FAV15/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI585092A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI576470A/chicken/BC/FAV8/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI590712A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI590699A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI590692A/chicken/Washington/3490-18/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI587633A/chicken/Iowa/04-20/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI586501A/poultry/BC/FAV17/2014 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI576477A/chicken/BC/FAV9/2014 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI573281A/turkey/Washington/61-22/2014 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI569383A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 4 (HA)3098.00.000000e+001696/1705 (99%)EPI586558A/chicken/BC/FAV25/2014 (A/H5N2) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI573271A/chicken/Washington/61-9/2014 (A/H5N2) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI573276A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI569390A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI569376A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI569372A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI588968A/chicken/Taiwan/a174/2015 (A/H5N3) segment 4 (HA)3075.80.000000e+001692/1705 (99%)EPI587521A/American wigeon/BC/050-31/2015 (A/H5N8) segment 4 (HA)3075.80.000000e+001692/1705 (99%)EPI585084A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 4 (HA)3075.80.000000e+001692/1705 (99%)EPI573638A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 4 (HA)3075.80.000000e+001692/1705 (99%)EPI588960A/duck/Taiwan/a043/2015 (A/H5N2) segment 4 (HA)3070.30.000000e+001691/1705 (99%)EPI588976A/duck/Taiwan/a068/2015 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI573286A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI553208A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA)3049.90.000000e+001686/1703 (99%)EPI573208A/gadwall/Korea/H1351/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561570A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI588952A/goose/Taiwan/a015/2015 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI585595A/baikal teal/Korea/2417/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585589A/baikal teal/Korea/2399/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585586A/baikal teal/Korea/1456/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI573242A/Common Teal/Korea/H844/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561646A/breeder duck/Korea/H249/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561626A/mallard/Korea/H207/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561605A/broiler duck/Korea/H145/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561591A/breeder duck/Korea/H128/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561529A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561508A/bean goose/Korea/H53/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561341A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585594A/baikal teal/Korea/2416/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585592A/baikal teal/Korea/2406/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585591A/baikal teal/Korea/2403/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585590A/baikal teal/Korea/2402/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585582A/baikal teal/Korea/1448/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585581A/baikal teal/Korea/1447/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585579A/baikal teal/Korea/1445/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585577A/baikal teal/Korea/1437/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI573199A/breeder chicken/Korea/H1068/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI573197A/chicken/Korea/H881/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561674A/bean goose/Korea/H328/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561612A/breeder duck/Korea/H158/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561577A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561563A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561542A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561522A/broiler duck/Korea/H65/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585593A/baikal teal/Korea/2414/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI585587A/baikal teal/Korea/1457/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI585584A/baikal teal/Korea/1452/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI585583A/baikal teal/Korea/1449/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI561705A/bean goose/Korea/H40/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI561667A/mallard/Korea/H297/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001686/1707 (98%)EPI561653A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI561633A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI509704A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI585580A/baikal teal/Korea/1446/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI573200A/Korean native chicken/Korea/H1139/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI573196A/broiler duck/Korea/H651/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI573194A/breeder chicken/Korea/H818/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561697A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561681A/tundra swan/Korea/H411/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561660A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561598A/broiler duck/Korea/H133/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561360A/broiler duck/Korea/H49/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561348A/broiler duck/Korea/H47/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561336A/broiler duck/Korea/H48/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561204A/broiler duck/Korea/H31/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561196A/broiler duck/Korea/H29/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI561187A/waterfowl/Korea/S005/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI517161A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 4 (HA)3025.90.000000e+001684/1706 (98%)
  20. niman
    LOCUS KT280932 1744 bp cRNA linear VRL 21-JUL-2015 DEFINITION Influenza A virus (A/chicken/Iowa/21981/2015(H5N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT280932 VERSION KT280932.1 GI:890948541 KEYWORDS . SOURCE Influenza A virus (A/chicken/Iowa/21981/2015(H5N2)) ORGANISM Influenza A virus (A/chicken/Iowa/21981/2015(H5N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1744) AUTHORS Arruda,P.H.E., Stevenson,G.W., Killian,M.L., Burrough,E.R., Gauger,P.C., Harmon,K.M., Magstadt,D.R., Yoon,K.-J., Zhang,J., Madison,D.M., Pineyro,P., Derscheid,R.J., Schwartz,K.J., Cooper,V.L., Halbur,P.G., Main,R.G., Sato,Y. and Arruda,B.L. TITLE Natural outbreak of H5N2 highly pathogenic avian influenza virus in 2015 in two commercial layer facilities in Iowa: Lesions and viral antigen distribution JOURNAL Unpublished REFERENCE 2 (bases 1 to 1744) AUTHORS Killian,M.L., Gauger,P.C. and Yoon,K.-J. TITLE Direct Submission JOURNAL Submitted (14-JUL-2015) Diagnostic Virology Laboratory, National Veterinary Services Laboratories (NVSL), USDA APHIS VS, 1920 Dayton Avenue, Ames, IA 50010, USA COMMENT GenBank Accession Numbers KT280929-KT280936 represent sequences from the 8 segments of Influenza A virus (A/chicken/Iowa/21981/2015(H5N2)). ##Assembly-Data-START## Assembly Method :: SeqMan NGen v. v4 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1744 /organism="Influenza A virus (A/chicken/Iowa/21981/2015(H5N2))" /mol_type="viral cRNA" /strain="A/chicken/Iowa/21981/2015" /serotype="H5N2" /isolation_source="OP swab; pooled sample" /host="chicken; commercial" /db_xref="taxon:1683477" /segment="4" /country="USA: Kossuth County, Iowa" /collection_date="27-Apr-2015" /note="NVSL 15-013775-5; EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant" gene 17..1720 /gene="HA" CDS 17..1720 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="AKQ62713.1" /db_xref="GI:890948542" /translation="MEKIVLPFAVISLVKSDQICIGYHANNSTKQVDTIMEKNVTVTH AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPICDEFIRVPEWSYIVERANPA NDLCYPGTLNDYEELKHLLSRINHFEKTLIIPRSSWPNHETSLGVSAACPYQGAPSFF RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAAEQTNLYKNPDTYVSVGT STLNQRLVPKIATRSQVNGQSGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG DSTIMKSEMEYGHCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR NSPQRERRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPKYS EEAILKREEISGVKLESIGTYQILSIYSTVASSLALAIIVAGLSLWMCSNGSLQCRIC I" mat_peptide 65..1051 /gene="HA" /product="HA1" mat_peptide 1052..1717 /gene="HA" /product="HA2" ORIGIN 1 ggttcaatct gtcaaaatgg agaaaatagt gcttcctttt gcagtgatta gccttgttaa 61 aagtgatcag atttgcattg gttaccatgc aaacaactca acaaagcagg ttgacacgat 121 aatggagaaa aacgtcactg ttacacatgc ccaagacata ctggaaaaga cacacaacgg 181 gaagctctgc gatcttaatg gagtgaagcc cctgattcta aaggattgta gcgtagctgg 241 gtggctcctt ggaaatccaa tatgcgacga gttcatcagg gtaccggaat ggtcttacat 301 cgtggagagg gctaacccag ccaacgacct ctgttaccca gggaccctca atgactacga 361 ggaactgaaa cacctattga gcagaataaa tcattttgag aaaactctga tcatccccag 421 gagttcttgg cccaatcatg aaacatcatt aggggtgagc gcagcatgtc cataccaggg 481 agcaccctca tttttcagaa atgtggtatg gctcatcaaa aagaacgatg catacccgac 541 aataaagata agctacaata ataccaatcg ggaagatctt ttgatactgt gggggattca 601 tcattccaac aatgcagcag agcagacaaa tctctataag aacccagaca cttatgtttc 661 cgttgggaca tcaacattaa accagagatt ggtgccaaaa atagctacta gatcccaagt 721 aaacgggcag agtggaagaa tggatttctt ctggacaatt ttaaaaccga atgatgcaat 781 ccactttgag agtaatggaa atttcattgc tccagaatat gcatacaaaa ttgtcaagaa 841 aggggactca acaattatga aaagtgaaat ggagtatggc cactgcaaca ccaaatgtca 901 aactccaata ggggcgataa actctagcat gccattccac aatatacacc ctctcaccat 961 cggggaatgc cccaaatacg tgaagtcaaa caaattagtc cttgcgactg ggctcagaaa 1021 tagtcctcaa agagaaagaa gaagaaaaag aggactattt ggagctatag cagggtttat 1081 agagggagga tggcagggaa tggtagacgg ttggtatggg tatcatcata gcaatgagca 1141 ggggagtggg tacgctgcag acaaagaatc aacccaaaag gcaatagatg gagttaccaa 1201 taaggtcaac tcaatcattg acaaaatgaa cactcaattt gaggccgttg gaagggaatt 1261 taataactta gaaaggagaa tagagaattt aaacaagaaa atggaagacg gattcctaga 1321 tgtctggact tataatgctg aacttttagt tctcatggaa aatgagagaa ctctagattt 1381 ccatgactca aatgtcaaga acctttacga caaagtccga ctacagctta gggataatgc 1441 aaaggagctg ggtaatggtt gtttcgagtt ctatcacaaa tgtgataacg aatgtatgga 1501 gagcgtaaga aatgggacgt atgactaccc taagtattca gaagaagcaa tattaaaaag 1561 agaagaaata agcggagtga aattagaatc aataggaact taccaaatac tgtcaattta 1621 ttcaacagtg gcgagttccc tagcactggc aatcatagtg gctggtctat ctttatggat 1681 gtgctctaat gggtcgttac aatgcagaat ttgcatctaa atttgtgagc tcagattgta 1741 atta
  21. niman
    A/chicken/Iowa/21981/2015 Fujian H5N2 sequences from Kossuth County Iowa
  22. niman
    Avian Influenza DiseaseLast Modified: Jul 22, 2015 PrintUSDA’s Animal and Plant Health Inspection Service (APHIS) works to keep avian influenza (AI), a serious poultry disease, from becoming established in the U.S. poultry population. AI viruses can infect chickens, turkeys, pheasants, quail, ducks, geese and guinea fowl, as well as a wide variety of other birds. Avian influenza findings can negatively impact poultry trade, so APHIS and its partners work together to protect the vitality of this important segment of the country’s livestock industry. HPAI 2014-2015 Response Information Response Documents: Policy, Health & Safety Information, and Resources Interactive Map and Chart of Current FindingsWeekly National Incident Maps of HPAI Detections Information for Stakeholders Announcements Stakeholder Announcements Additional Criteria Must Be Met Before Emergency Use of Vaccine for Highly Pathogenic Avian Influenza Can Be ApprovedAPHIS Administrator Speaks to Avian Influenza Response CapabilitiesImport Alert (Dec 2014) Information Sheets for Producers Emergency Response Procedures: Cleaning & DisinfectionEmergency Response Procedures: Depopulation & DisposalEmergency Response Procedures: Appraisal and IndemnityMass Depopulation and Carcass DisposalQ&A: Highly Pathogenic Avian Influenza Other Materials HPAI Biosecurity ChecklistBackyard Poultry Biosecurity InformationLive Bird Marketing System Program Information on Detection and Monitoring in Wild Birds 2015 Surveillance Plan for Highly Pathogenic Avian Influenza in Waterfowl in the United StatesU.S. Interagency Strategic Plan for Early Detection and Monitoring for Avian Influenzas of Significance in Wild BirdsWild Bird Highly Pathogenic Avian Influenza Cases in the United States Information for Contractors Seeking to Assist in the Response Information for Contractors Providing Emergency Response Services General Information on Avian Influenza HPAI General Resources and InformationBackground on Avian Influenza & Responding to Avian InfluenzaAdditional APHIS Avian Influenza Outreach MaterialsCDC H5 Avian Influenza Page Additional InformationPrevent Avian Influenza at Your Farm - Improve Your Biosecurity with Simple Wildlife Management PracticesAvian Influenza Outreach Materialshttp://www.aphis.usda.gov/wps/portal/aphis/home/!ut/p/a1/04_Sj9CPykssy0xPLMnMz0vMAfGjzOK9_D2MDJ0MjDz9vT3NDDz9woIMnDxcDA2CjYEKIoEKDHAARwNC-sP1o8BKnN0dPUzMfYB6TCyMDDxdgPLmlr4GBp5mUAV4rCjIjTDIdFRUBADp5_lR/?1dmy&urile=wcm%3apath%3a%2Faphis_content_library%2Fsa_our_focus%2Fsa_animal_health%2Fsa_animal_disease_information%2Fsa_avian_health%2Fct_avian_influenza_disease
  23. niman
    APHIS has updated Avian Influenza July 22
  24. niman
    http://rense.gsradio.net:8080/rense/special/rense_Niman_071615.mp3
  25. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI623942A/chicken/England/26352/2015 (A/H7N7) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI514948A/mallard/Sweden/52405/2006 (A/H0) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI514602A/mallard/Sweden/50108/2006 (A/H4N6) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI372498A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI367577A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 8 (NS)1498.80.000000e+00829/838 (98%)EPI513751A/mallard/Sweden/79978/2008 (A/H4N6) segment 8 (NS)1493.20.000000e+00828/838 (98%)EPI485625A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 8 (NS)1487.70.000000e+00827/838 (98%)EPI475943A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 8 (NS)1487.70.000000e+00827/838 (98%)EPI618642A/mallard/Sweden/366/2002 (A/H11N9) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI499903A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI485622A/mallard/Sweden/16/2002 (A/H12N9) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI464812A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI284361A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI238668A/turkey/Italy/977/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI89829A/turkey/Italy/3620/1999 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI69224A/turkey/Italy/1265/99 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI68189A/turkey/Italy/977/99 (A/H7N1) segment 8 (NS)1482.10.000000e+00826/838 (98%)EPI505522A/chicken/Italy/1081/1999 (A/H7N1) segment 8 (NS)1478.40.000000e+00825/838 (98%)EPI525965A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505571A/turkey/Italy/1555/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505542A/turkey/Italy/1085/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505529A/turkey/Italy/1083/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI387548A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 8 (NS)1476.60.000000e+00826/839 (98%)EPI327348A/turkey/Italy/1067/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI306425A/shoveler/Koymor/118/2009 (A/H3) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI238411A/chicken/Italy/1067/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI89841A/turkey/Italy/4169/99 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI63324A/chicken/Italy/1082/1999 (A/H7N1) segment 8 (NS)1476.60.000000e+00825/838 (98%)EPI505579A/turkey/Italy/2716/1999 (A/H7N1) segment 8 (NS)1472.90.000000e+00824/838 (98%)EPI617999A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI438359A/chicken/Italy/1279/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI327341A/chicken/Italy/1391/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI251609A/common teal/Netherlands/9/2000 (A/H11N9) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI244104A/goose/Germany/R3160/09 (A/H5N2) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI238621A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI238300A/turkey/Italy/2379/2000 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI235568A/Anas angustirostris/Astrakhan/3088/2002 (A/H4N8) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI69205A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI69186A/turkey/Italy/2715/99 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI69148A/turkey/Italy/3489/99 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI68512A/turkey/Italy/3488/1999 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI68493A/turkey/Italy/3185/99 (A/H7N1) segment 8 (NS)1471.10.000000e+00824/838 (98%)EPI505543A/turkey/Italy/1086/1999 (A/H7N1) segment 8 (NS)1467.40.000000e+00823/838 (98%)EPI619108A/mallard/Sweden/99377/2009 (A/H8N4) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI619006A/mallard/Sweden/770/2002 (A/H10N6) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI618993A/mallard/Sweden/768/2002 (A/H10N6) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI618977A/mallard/Sweden/766/2002 (A/H0) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI618491A/mallard/Sweden/101589/2009 (A/H11N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI514847A/mallard/Sweden/1883/2003 (A/H4N3) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI507722A/turkey/Italy/4749/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI485680A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI485537A/mallard/Sweden/43/2002 (A/H10N5) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI433416A/mallard/Czech Republic/15962-4T/2010 (A/H6N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI433409A/mallard/Czech Republic/15902-25K/2009 (A/H11N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI433390A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI367601A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI314712A/mallard/Czech Republic/15902-18K/2009 (A/H11N9) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI309095A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI251709A/mallard/Sweden/41/2002 (A/H10N6) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI238637A/turkey/Italy/3675/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI238629A/turkey/Italy/3283/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI236182A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI69129A/turkey/Italy/4301/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI68474A/turkey/Italy/4295/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI63305A/quail/Italy/396/2000 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI63267A/chicken/Italy/4746/1999 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI60414A/turkey/Italy/3675/99 (A/H7N1) segment 8 (NS)1465.50.000000e+00823/838 (98%)EPI619115A/mallard/Sweden/101165/2009 (A/H8N4) segment 8 (NS)1460.00.000000e+00823/839 (98%)EPI618604A/mallard/Sweden/50968/2006 (A/H12N5) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI514670A/mallard/Sweden/7582/2003 (A/H4N6) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI507730A/turkey/Italy/4756/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI507714A/turkey/Italy/4827/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI507698A/turkey/Italy/4618/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI485840A/mallard/Netherlands/1/2001 (A/H6N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI377890A/mallard/Sweden/72/2005 (A/H2N9) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI372514A/garganey/Ukraine/05839-NAMRU3/2006 (A/H14N6) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI364119A/duck/Fujian/3264/2007 (A/H6N6) segment 8 (NS)1460.00.000000e+00823/839 (98%)EPI238660A/turkey/Italy/4580/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI69110A/turkey/Italy/4617/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI69072A/chicken/Italy/4789/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI69053A/quail/Italy/4992/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI68436A/turkey/Italy/4708/1999 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI68227A/turkey/Italy/1084/2000 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI60756A/duck/Italy/551/2000 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI60395A/turkey/Italy/4580/99 (A/H7N1) segment 8 (NS)1460.00.000000e+00822/838 (98%)EPI505690A/chicken/Italy/161/2000 (A/H7N1) segment 8 (NS)1456.30.000000e+00821/838 (97%)EPI505631A/turkey/Italy/5005/1999 (A/H7N1) segment 8 (NS)1456.30.000000e+00818/833 (98%)EPI118226A/mallard/Italy/36/2002 (A/H5N3) segment 8 (NS)1456.30.000000e+00816/830 (98%)EPI618655A/mallard/Sweden/418/2002 (A/H11N9) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI525913A/ruddy shelduck/Mongolia/590C2/2009 (A/H11N2) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI514687A/mallard/Sweden/5724/2005 (A/H4N2) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI514677A/mallard/Sweden/7925/2005 (A/H4N6) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI507706A/turkey/Italy/4828/1999 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505919A/chicken/Italy/2021/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505806A/turkey/Italy/1009/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505774A/turkey/Italy/720/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505773A/chicken/Italy/662/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505677A/turkey/Italy/148/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI505673A/chicken/Italy/18/2000 (A/H7N1) segment 8 (NS)1454.40.000000e+00821/838 (97%)EPI378006A/mallard/Netherlands/29/2010 (A/H2N3) segment 8 (NS)1454.40.000000e+00822/839 (97%)
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