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niman

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  1. niman
    HPAI H7N7 confirmed In Lancashire UK
  2. niman
    AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KT036374.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01 variant 2, partial genome22412241100%0.0100%KT036374.1Select seq gb|KT036373.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01 variant 1, partial genome22412241100%0.0100%KT036373.1Select seq gb|KT036372.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01, partial genome22412241100%0.0100%KT036372.1Select seq gb|KT029139.1|Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/KNIH/002_05_2015, complete genome22412241100%0.0100%KT029139.1Select seq gb|KT026453.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_2959_2015, complete genome22412241100%0.0100%KT026453.1Select seq gb|KT006149.2|Middle East respiratory syndrome coronavirus strain ChinaGD01, complete genome22412241100%0.0100%KT006149.2Select seq gb|KJ713297.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-503, complete genome22412241100%0.0100%KJ713297.1Select seq gb|KJ156953.1|Middle East respiratory syndrome coronavirus isolate Riyadh_15f_2013 N protein and ORF8b genes, complete cds22412241100%0.0100%KJ156953.1Select seq gb|KJ156902.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_24g_2013 N protein and ORF8b genes, complete cds22412241100%0.0100%KJ156902.1Select seq gb|KJ156934.1|Middle East respiratory syndrome coronavirus isolate Riyadh_14_2013, complete genome22412241100%0.0100%KJ156934.1Select seq gb|KJ156866.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_25_2013, complete genome22412241100%0.0100%KJ156866.1Select seq gb|KF600652.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2_2012, complete genome22412241100%0.0100%KF600652.1Select seq gb|KF600651.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_18_2013, complete genome22412241100%0.0100%KF600651.1Select seq gb|KF600647.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_17_2013, complete genome22412241100%0.0100%KF600647.1Select seq gb|KF600645.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_15_2013, complete genome22412241100%0.0100%KF600645.1Select seq gb|KF600644.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_16_2013, complete genome22412241100%0.0100%KF600644.1Select seq gb|KF600643.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_14b_2013, partial genome22412241100%0.0100%KF600643.1Select seq gb|KF600639.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_9e_2013, partial genome22412241100%0.0100%KF600639.1Select seq gb|KF600636.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_11c_2013, partial genome22412241100%0.0100%KF600636.1Select seq gb|KF600635.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_8d_2013, partial genome22412241100%0.0100%KF600635.1Select seq gb|KF600634.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_21_2013, complete genome22412241100%0.0100%KF600634.1Select seq gb|KF600628.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_1_2013, complete genome22412241100%0.0100%KF600628.1Select seq gb|KF600627.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_12_2013, complete genome22412241100%0.0100%KF600627.1Select seq gb|KF600621.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_22f_2013, partial genome22412241100%0.0100%KF600621.1Select seq gb|KF600620.1|Middle East respiratory syndrome coronavirus isolate Bisha_1_2012, complete genome22412241100%0.0100%KF600620.1Select seq gb|KF600612.1|Middle East respiratory syndrome coronavirus isolate Riyadh_1_2012, complete genome22412241100%0.0100%KF600612.1Select seq gb|KF192507.1|Middle East respiratory syndrome coronavirus, complete genome22412241100%0.0100%KF192507.1Select seq gb|KF186565.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_3_2013, complete genome22412241100%0.0100%KF186565.1Select seq gb|KF186567.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome22412241100%0.0100%KF186567.1Select seq gb|KF186566.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_2_2013, complete genome22412241100%0.0100%KF186566.1Select seq gb|KF186564.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_4_2013, complete genome22412241100%0.0100%KF186564.1Select seq gb|KJ156862.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_23e_2013 N protein and ORF8b genes, complete cds22372237100%0.099%KJ156862.1Select seq gb|KT156560.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2285_2013, complete genome22352235100%0.099%KT156560.1Select seq gb|KT026456.1|Middle East respiratory syndrome coronavirus isolate Hu/Riyadh_KSA_4050_2015, complete genome22352235100%0.099%KT026456.1Select seq gb|KT026454.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_4050_2015, complete genome22352235100%0.099%KT026454.1Select seq gb|KJ361503.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_Isolate_Sanger, complete genome22352235100%0.099%KJ361503.1Select seq gb|KJ361502.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_InSpu_Sanger, complete genome22352235100%0.099%KJ361502.1Select seq gb|KJ361501.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_IS_HTS, complete genome22352235100%0.099%KJ361501.1Select seq gb|KJ361500.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_Sanger, complete genome22352235100%0.099%KJ361500.1Select seq gb|KP719933.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1209/2014, complete genome22352235100%0.099%KP719933.1Select seq gb|KP719932.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1243.12/2014, complete genome22352235100%0.099%KP719932.1Select seq gb|KP719931.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1339.2/2014, complete genome22352235100%0.099%KP719931.1Select seq gb|KP719930.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.14/2014, complete genome22352235100%0.099%KP719930.1Select seq gb|KP719929.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.11/2014, complete genome22352235100%0.099%KP719929.1Select seq gb|KP719928.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.10/2014, complete genome22352235100%0.099%KP719928.1Select seq gb|KP719927.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.9/2014, complete genome22352235100%0.099%KP719927.1Select seq gb|KM210278.1|Middle East respiratory syndrome coronavirus isolate England/3/2013, complete genome22352235100%0.099%KM210278.1Select seq gb|KM210277.1|Middle East respiratory syndrome coronavirus isolate England/4/2013, complete genome22352235100%0.099%KM210277.1Select seq gb|KP209313.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_26_2014, complete genome22352235100%0.099%KP209313.1Select seq gb|KP209312.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_9_2013, complete genome22352235100%0.099%KP209312.1Select seq gb|KP209309.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_30_2014, complete genome22352235100%0.099%KP209309.1Select seq gb|KP209308.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_16_2014, complete genome22352235100%0.099%KP209308.1Select seq gb|KP209307.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_18_2014, complete genome22352235100%0.099%KP209307.1Select seq gb|KP209306.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_8_2014, complete genome22352235100%0.099%KP209306.1Select seq gb|KM015348.1|Middle East respiratory syndrome coronavirus isolate England/2/2013, complete genome22352235100%0.099%KM015348.1Select seq gb|KF811035.1|Middle East respiratory syndrome coronavirus strain Tunisia-Qatar_2013 nucleocapsid protein gene, complete cds22352235100%0.099%KF811035.1Select seq gb|KJ713298.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-363, complete genome22352235100%0.099%KJ713298.1Select seq gb|KJ156927.1|Middle East respiratory syndrome coronavirus ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds22352235100%0.099%KJ156927.1Select seq gb|KJ156865.1|Middle East respiratory syndrome coronavirus isolate Riyadh_17c_2013 ORF4a, ORF4b, ORF5, E protein, M protein, and N protein genes, complete cds; and ORF8b-like gene, complete sequence22352235100%0.099%KJ156865.1Select seq gb|KJ156909.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_28h_2013 N protein and ORF8b genes, complete cds22352235100%0.099%KJ156909.1Select seq gb|KJ156939.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_27b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds22352235100%0.099%KJ156939.1Select seq gb|KJ156876.1|Middle East respiratory syndrome coronavirus isolate Taif_2b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds22352235100%0.099%KJ156876.1Select seq gb|KJ156872.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_26c_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds22352235100%0.099%KJ156872.1Select seq gb|KJ156932.1|Middle East respiratory syndrome coronavirus isolate Asir_2g_2013 M protein gene, partial cds; and N protein and ORF8b genes, complete cds22352235100%0.099%KJ156932.1Select seq gb|KJ156917.1|Middle East respiratory syndrome coronavirus isolate Madinah_1c_2013 M protein gene, partial cds; N protein gene, complete cds; and ORF8b-like gene, complete sequence22352235100%0.099%KJ156917.1Select seq gb|KJ156942.1|Middle East respiratory syndrome coronavirus isolate Riyadh_8b_2013, partial genome22352235100%0.099%KJ156942.1Select seq gb|KJ156916.1|Middle East respiratory syndrome coronavirus isolate Madinah_3b_2013, partial genome22352235100%0.099%KJ156916.1Select seq gb|KF961222.1|Middle East respiratory syndrome coronavirus isolate Qatar4, complete genome22352235100%0.099%KF961222.1Select seq gb|KF745068.1|Middle East respiratory syndrome coronavirus isolate FRA/UAE, complete genome22352235100%0.099%KF745068.1Select seq gb|KF600632.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_19_2013, complete genome22352235100%0.099%KF600632.1Select seq gb|KF600630.1|Middle East respiratory syndrome coronavirus isolate Buraidah_1_2013, complete genome22352235100%0.099%KF600630.1Select seq gb|KT156561.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2874_2013, complete genome22322232100%0.099%KT156561.1Select seq gb|KR011266.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2049/2015, complete genome22322232100%0.099%KR011266.1Select seq gb|KR011265.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2466/2015, complete genome22322232100%0.099%KR011265.1Select seq gb|KR011264.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2343/2015, complete genome22322232100%0.099%KR011264.1Select seq gb|KR011263.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2345/2015, complete genome22322232100%0.099%KR011263.1Select seq gb|KP209310.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi/Gayathi_UAE_2_2014, complete genome22322232100%0.099%KP209310.1Select seq gb|KJ614529.1|Human betacoronavirus 2c Jordan-N3/2012 isolate MG167, complete genome22322232100%0.099%KJ614529.1Select seq gb|KJ650297.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 1, complete genome22322232100%0.099%KJ650297.1Select seq gb|KJ650296.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 19Dam, complete genome22322232100%0.099%KJ650296.1Select seq gb|KJ650295.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 13, complete genome22322232100%0.099%KJ650295.1Select seq gb|KJ156901.1|Middle East respiratory syndrome coronavirus isolate Riyadh_12b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds22322232100%0.099%KJ156901.1Select seq gb|KJ156861.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_4d_2013 M protein gene, partial cds; and N protein and ORF8b genes, complete cds22322232100%0.099%KJ156861.1Select seq gb|KJ156906.1|Middle East respiratory syndrome coronavirus isolate Taif_3g_2013 M protein gene, partial cds; and N protein and ORF8b genes, complete cds22322232100%0.099%KJ156906.1Select seq gb|KJ156871.1|Middle East respiratory syndrome coronavirus isolate Taif_4b_2013 M protein gene, partial cds; and N protein and ORF8b genes, complete cds22322232100%0.099%KJ156871.1Select seq gb|KJ156952.1|Middle East respiratory syndrome coronavirus isolate Riyadh_4_2013, complete genome22322232100%0.099%KJ156952.1Select seq gb|KJ156949.1|Middle East respiratory syndrome coronavirus isolate Taif_1_2013, complete genome22322232100%0.099%KJ156949.1Select seq gb|KJ156910.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_2_2013, complete genome22322232100%0.099%KJ156910.1Select seq gb|KJ156881.1|Middle East respiratory syndrome coronavirus isolate Wadi-Ad-Dawasir_1_2013, complete genome22322232100%0.099%KJ156881.1Select seq gb|KJ156874.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_6_2013, complete genome22322232100%0.099%KJ156874.1Select seq gb|KF961221.1|Middle East respiratory syndrome coronavirus isolate Qatar3, complete genome22322232100%0.099%KF961221.1Select seq gb|KC776174.1|Human betacoronavirus 2c Jordan-N3/2012, complete genome22322232100%0.099%KC776174.1Select seq gb|KP236093.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi/Oman_UAE_7_2013 N protein (N) gene, complete cds22282228100%0.099%KP236093.1Select seq gb|KM027262.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_683/KSA/2014, complete genome22262226100%0.099%KM027262.1Select seq gb|KJ813439.1|Middle East respiratory syndrome coronavirus strain Indiana/USA-1_Saudi Arabia_2014, complete genome22262226100%0.099%KJ813439.1Select seq gb|KJ650098.1|Middle East respiratory syndrome coronavirus isolate Camel/Qatar_2_2014, complete genome22262226100%0.099%KJ650098.1Select seq gb|KJ713299.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-376, complete genome22262226100%0.099%KJ713299.1Select seq gb|KJ713296.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-378, complete genome22262226100%0.099%KJ713296.1Select seq gb|KJ156883.1|Middle East respiratory syndrome coronavirus isolate Asir_1d_2013 N protein and ORF8b genes, complete cds22262226100%0.099%KJ156883.1Select seq gb|KJ156944.1|Middle East respiratory syndrome coronavirus isolate Riyadh_5_2013, complete genome22262226100%0.099%KJ156944.1 Alignments
  3. niman
    LOCUS KT225476 1242 bp RNA linear VRL 07-JUL-2015DEFINITION Middle East respiratory syndrome coronavirus isolateMERS-CoV/THA/CU/17_06_2015 nucleocapsid and ORF8b genes, completecds.ACCESSION KT225476VERSION KT225476.1 GI:861032911KEYWORDS .SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV)ORGANISM Middle East respiratory syndrome coronavirusViruses; ssRNA viruses; ssRNA positive-strand viruses, no DNAstage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;unclassified Betacoronavirus.REFERENCE 1 (bases 1 to 1242)AUTHORS Plipat,T., Buathong,R., Siriarayapon,P., Wacharapluesadee,S.,Kaewpom,T., Prtcharat,S., Ponpinit,T., Jumpasri,J., Joyjinda,Y.,Rodpan,A., Jittmitraphap,A., Khongwichit,S., Smith,D.R. andHemachudha,T.TITLE First imported case of MERS-CoV infection in Thailand, June 2015JOURNAL UnpublishedREFERENCE 2 (bases 1 to 1242)AUTHORS Plipat,T., Buathong,R., Siriarayapon,P., Wacharapluesadee,S.,Kaewpom,T., Prtcharat,S., Ponpinit,T., Jumpasri,J., Joyjinda,Y.,Rodpan,A., Jittmitraphap,A., Khongwichit,S., Smith,D.R. andHemachudha,T.TITLE Direct SubmissionJOURNAL Submitted (30-JUN-2015) Department of Disease Control Ministry ofPublic Health, Bureau of Epidemiology, Tivanond Road, Muang,Nonthaburi 11000, ThailandCOMMENT ##Assembly-Data-START##Sequencing Technology :: Sanger dideoxy sequencing##Assembly-Data-END##FEATURES Location/Qualifierssource 1..1242/organism="Middle East respiratory syndrome coronavirus"/mol_type="genomic RNA"/isolate="MERS-CoV/THA/CU/17_06_2015"/isolation_source="sputum"/host="Homo sapiens"/db_xref="taxon:1335626"/country="Thailand"/collection_date="17-Jun-2015"CDS 1..1242/codon_start=1/product="nucleocapsid"/protein_id="AKO73399.1"/db_xref="GI:861032912"/translation="MASPAAPRAVSFADNNDITNTNLSRGRGRNPKPRAAPNNTVSWYTGLTQHGKVPLTFPPGQGVPLNANSTPAQNAGYWRRQDRKINTGNGIKQLAPRWYFYYTGTGPEAALPFRAVKDGIVWVHEDGATDAPSTFGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSVSRNSSRSSSQGSRSGNSTRGTSPGPSGIGAVGGDLLYLDLLNRLQALESGKVKQSQPKVITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQIAELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNIDAYKTFPKKEKKQKAPKEESTDQMSEPPKEQRVQGSITQRTRTRPSVQPGPMIDVNTD"CDS 197..535/codon_start=1/product="ORF8b"/protein_id="AKO73400.1"/db_xref="GI:861032913"/translation="MPIPPLRKMLGIGGDRTEKLIPGMELSNWLPGGTSTTLELDPKQHSHSGLLRMASFGSMKMAPLMLLQLLGRGTLTMIQLLLHNSRPVLSFLKTSTLRGLEAIVNHLQEPLA"ORIGIN 1 atggcatccc ctgctgcacc tcgtgctgtt tcctttgccg ataacaatga tataacaaat61 acaaacctgt ctcgaggtag aggacgtaat ccaaaaccac gagctgcacc aaataacact121 gtctcttggt acactgggct tacccaacac gggaaagtcc ctcttacctt tccacctggg181 cagggtgtac ctcttaatgc caattccacc cctgcgcaaa atgctgggta ttggcggaga241 caggacagaa aaattaatac cgggaatgga attaagcaac tggctcccag gtggtacttc301 tactacactg gaactggacc cgaagcagca ctcccattcc gggctgttaa ggatggcatc361 gtttgggtcc atgaagatgg cgccactgat gctccttcaa cttttgggac gcggaaccct421 aacaatgatt cagctattgt tacacaattc gcgcccggta ctaagcttcc taaaaacttc481 cacattgagg ggactggagg caatagtcaa tcatcttcaa gagcctctag cgtaagcaga541 aactcttcca gatctagttc acaaggttca agatcaggaa actctacccg cggcacttct601 ccaggtccat ctggaatcgg agcagtagga ggtgatctac tttaccttga tcttctgaac661 agactacaag cccttgagtc tggcaaagta aagcaatcgc agccaaaagt aatcactaag721 aaagatgctg ctgctgctaa aaataagatg cgccacaagc gcacttccac caaaagtttc781 aacatggtgc aagcttttgg tcttcgcgga ccaggagacc tccagggaaa ctttggtgat841 cttcaattga ataaactcgg cactgaggac ccacgttggc cccaaattgc tgagcttgct901 cctacagcca gtgcttttat gggtatgtcg caatttaaac ttacccatca gaacaatgat961 gatcatggca accctgtgta cttccttcgg tacagtggag ccattaaact tgacccaaag1021 aatcccaact acaataagtg gttggagctt cttgagcaaa atattgatgc ctacaaaacc1081 ttccctaaga aggaaaagaa acaaaaggca ccaaaagaag aatcaacaga ccaaatgtct1141 gaacctccaa aggagcagcg tgtgcaaggt agcatcactc agcgcactcg cacccgtcca1201 agtgttcagc ctggtccaat gattgatgtt aacactgatt ag
  4. niman
    Thailand Department of Disease Control Ministry of Public Health release full N / ORF 8b MERS sequence which is identical to South Korea sequence.
  5. niman
    Phylogenetic analysis of 2014 AFP sequences
  6. niman
    D68 AFP including 2014 sequences from New York
  7. niman
    LOCUS KR081327 453 bp RNA linear VRL 18-APR-2015 DEFINITION Enterovirus D68 isolate MEX3080/14 viral protein 1 gene, partial cds. ACCESSION KR081327 VERSION KR081327.1 GI:806981400 KEYWORDS . SOURCE Enterovirus D68 (EV-D68) ORGANISM Enterovirus D68 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Enterovirus; Enterovirus D. REFERENCE 1 (bases 1 to 453) AUTHORS Vazquez-Perez,J.A., Moreno-Valencia,Y., Hernandez-Hernandez,V.A., Romero-Espinoza,J.I., Castillejo-Lopez,M., Hernandez,A., Ramirez-Gonzalez,J.E. and Diaz-Quinones,A. TITLE EV-D68 infection in children with asthma exacerbation and pneumonia in Mexico City during 2014 autumn JOURNAL Unpublished REFERENCE 2 (bases 1 to 453) AUTHORS Vazquez-Perez,J.A., Hernandez-Hernandez,V.A., Romero-Espinoza,J.I., Coronel-Tellez,R.H. and Moreno-Valencia,Y. TITLE Direct Submission JOURNAL Submitted (10-APR-2015) Virology and Mycology Research, National Institute of Respiratory Diseases, Calzada de Tlalpan 4502, Seccion XVI Tlalpan, Mexico City, Mexico D.F. 14080, Mexico COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..453 /organism="Enterovirus D68" /mol_type="genomic RNA" /isolate="MEX3080/14" /isolation_source="pediatric respiratory sample" /host="Homo sapiens" /db_xref="taxon:42789" /country="Mexico" /collection_date="Oct-2014" CDS <1..>453 /note="VP1" /codon_start=1 /product="viral protein 1" /protein_id="AKC32639.1" /db_xref="GI:806981401" /translation="GVSETLVENFLSRAALVSKRSFEYKDHTSSAAQADKNFFKWTIN TRSFVQLRRKLELFTYLRFDAEITILTTVAVNGSSNNTYVGLPDLTLQAMFVPTGALT PEKQDSFHWQSGSNASVFFKISDPPARITIPFMCINSAYSVFYDGFAGF" ORIGIN 1 ggtgtgtccg agactctagt ggagaatttt ctcagtagag cagctttggt atcaaagaga 61 agttttgaat acaaagatca tacttcgtct gcagcacaag cagacaagaa ctttttcaaa 121 tggacaatta acaccagatc ctttgtacag ttaagaagaa aattagaatt attcacatac 181 cttagatttg atgctgagat cactatactc acaactgtag cagtgaatgg tagtagtaat 241 aatacatacg tgggtcttcc tgacttgaca cttcaagcaa tgtttgtacc cactggtgct 301 cttaccccag aaaagcagga ctcattccac tggcaatcag gcagtaatgc tagtgtattc 361 tttaaaatct ctgacccccc agccagaata accatacctt ttatgtgcat taactcagca 421 tactcagttt tttatgatgg ctttgccgga ttt
  8. niman
    National Institute of Respiratory Diseases in Mexico City released 2014 D68 sequences which match acute flaccid paralysis (AFP) novel sub-clade.
  9. niman
    LOCUS KP742372 340 bp RNA linear VRL 02-JUN-2015 DEFINITION Enterovirus D68 isolate NY56/288 capsid VP1 gene, partial cds. ACCESSION KP742372 VERSION KP742372.1 GI:754294958 KEYWORDS . SOURCE Enterovirus D68 (EV-D68) ORGANISM Enterovirus D68 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Enterovirus; Enterovirus D. REFERENCE 1 (bases 1 to 340) AUTHORS Zhuge,J., Vail,E., Bush,J.L., Singelakis,L., Huang,W., Nolan,S.M., Haas,J.P., Engel,H., Della Posta,M., Yoon,E.C., Fallon,J.T. and Wang,G. TITLE Evaluation of a Real-Time Reverse Transcription-PCR Assay for Detection of Enterovirus D68 in Clinical Samples from an Outbreak in New York State in 2014 JOURNAL J. Clin. Microbiol. 53 (6), 1915-1920 (2015) PUBMED 25854481 REFERENCE 2 (bases 1 to 340) AUTHORS Zhuge,J., Vail,E., Bush,J.L., Singelakis,L., Huang,W., Nolan,S.M., Haas,J., Fallon,J.T. and Wang,G. TITLE Direct Submission JOURNAL Submitted (04-FEB-2015) Pathology and Clinical Laboratories, Westchester Medical Center, 100 Woods Road, Valhalla, NY 10595, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..340 /organism="Enterovirus D68" /mol_type="genomic RNA" /isolate="NY56/288" /isolation_source="nasopharyngeal swab" /host="Homo sapiens" /db_xref="taxon:42789" /country="USA: NY" /collection_date="17-Sep-2014" CDS <1..>340 /codon_start=2 /product="capsid VP1" /protein_id="AJI76526.1" /db_xref="GI:754294959" /translation="ATSNTEPEEAIQTRTVINQHGVSETLVENFLSRAALVSKRSFEY KDHTSSAAQADKNFFKWTINTRSFVQLRRKLELFTYLRFDAEITILTTVAVNGSSNNT YVGLPDLTLQA" ORIGIN 1 tgcaacttct aacactgaac cagaagaagc catacaaact cgcacagtga taaatcagca 61 cggtgtatcc gagactctag tggagaattt tctcagtaga gcagctttgg tatcaaagag 121 aagttttgaa tacaaagatc atacttcgtc tgcagcacaa gcagacaaga actttttcaa 181 atggacaatt aacaccagat cctttgtaca gttaagaaga aaattagaat tattcacata 241 ccttagattt gatgctgaga tcactatact cacaactgta gcagtgaatg gtagtagtaa 301 taatacatac gtgggtcttc ctgacttgac acttcaagca
  10. niman
    LOCUS KT099085 443 bp RNA linear VRL 29-JUN-2015 DEFINITION Enterovirus D68 isolate NY09 capsid VP1 gene, partial cds. ACCESSION KT099085 VERSION KT099085.1 GI:848237409 KEYWORDS . SOURCE Enterovirus D68 (EV-D68) ORGANISM Enterovirus D68 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Enterovirus; Enterovirus D. REFERENCE 1 (bases 1 to 443) AUTHORS Zhen,W., Duong,S., Chandrasekaran,A., Zhang,F., Joseph,A., Damle,A. and Juretschko,S. TITLE A rapid one-step, real time RT-PCR assay for Enterovirus D68-specific Detection JOURNAL Unpublished REFERENCE 2 (bases 1 to 443) AUTHORS Zhen,W. and Juretschko,S. TITLE Direct Submission JOURNAL Submitted (11-JUN-2015) Molecular Diagnostics, North Shore LIJ Health System Laboratories, 10 Nevada Drive, Lake Success, NY 11375, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..443 /organism="Enterovirus D68" /mol_type="genomic RNA" /isolate="NY09" /isolation_source="nasopharyngeal swab" /host="Homo sapiens" /db_xref="taxon:42789" /country="USA: NY" /collection_date="18-Sep-2014" CDS <1..>443 /codon_start=1 /product="capsid VP1" /protein_id="AKN24918.1" /db_xref="GI:848237410" /translation="ESIIKTATDTVKSEINAELGVVPSLNAVETGATSNTEPEEAIQT RTVINQHGVSETLVENFLSRAALVSKRSFEYKDHTSSAAQADKNFFKWTINTRSFVQL RRKLELFTYLRFDAEITILTTVAVNGSSNNTYVGLPDLTLQAMLVP" ORIGIN 1 gagagcatca tcaaaacagc aaccgacact gtgaaaagtg agattaatgc tgaacttggt 61 gtggtcccta gcttaaatgc agttgaaaca ggtgcaactt ctaacactga accagaagaa 121 gccatacaaa ctcgcacagt gataaatcag cacggtgtat ccgagactct agtggagaat 181 tttctcagta gagcagcttt ggtatcaaag agaagttttg aatacaaaga tcatacttcg 241 tctgcagcac aagcagacaa gaactttttc aaatggacaa ttaacaccag atcctttgta 301 cagttaagaa gaaaattaga attattcaca taccttagat ttgatgctga gatcactata 361 ctcacaactg tagcagtgaa tggtagtagt aataatacat acgtgggtct tcctgacttg 421 acacttcaag caatgttagt acc
  11. niman
    Recently released D68 enterovirus sequences from 2014 New York collections include the novel acute flaccid paralysis (AFP) sub-clade.
  12. niman
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI621543A/chicken/Iraq/KCVL-I/2015 (A/H5N1) segment 6 (NA)1432.30.000000e+00775/775 (100%)EPI621174A/chicken/Jiangsu/2477/2014 (A/H5N1) segment 6 (NA)1365.80.000000e+00764/776 (98%)EPI567305A/chicken/Nigeria/15VIR339-2/2015 (A/H5N1) segment 6 (NA)1349.20.000000e+00761/776 (98%)EPI500773A/Alberta/01/2014 (A/H5N1) segment 6 (NA)1339.90.000000e+00759/776 (97%)EPI559149A/muscovy duck/Vietnam/NCVD-KA395/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI559141A/duck/Vietnam/NCVD-KA300/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI503722A/Japanese white-eye/Taoyuan/Q454/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI425687A/duck/Vietnam/NCVD-1602/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI425655A/duck/Vietnam/NCVD-1968/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI425631A/duck/Vietnam/NCVD-1928/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI425623A/duck/Vietnam/NCVD-1930/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI425159A/duck/Vietnam/NCVD-1937/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424983A/duck/Vietnam/NCVD-1584/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424743A/duck/Vietnam/NCVD-1932/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424735A/chicken/Vietnam/NCVD-1927/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424198A/muscovy duck/Vietnam/LBM230/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424190A/muscovy duck/Vietnam/LBM229/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424182A/muscovy duck/Vietnam/LBM228/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI424174A/muscovy duck/Vietnam/LBM227/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI417809A/duck/Vietnam/OIE-2212/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI417798A/duck/Vietnam/OIE-2236/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI417780A/duck/Vietnam/OIE-2211/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI408417A/duck/Vietnam/OIE-2202/2012 (A/H5N1) segment 6 (NA)1332.60.000000e+00758/776 (97%)EPI559154A/chicken/Vietnam/NCVD-KA435/2013 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI559138A/chicken/Vietnam/NCVD-KA275/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI545514A/chicken/Khanhhoa/CVVI-42/2014 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI545512A/chicken/Khanhhoa/CVVI-40/2014 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI545511A/chicken/Khanhhoa/CVVI-39/2014 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI545491A/duck/Khanhhoa/CVVI-19/2013 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI531374A/hill myna/Heilongjiang/0704/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI462794A/mynah/Austria-quarantine/13064792-010/13 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI461024A/duck/Vietnam/QB1207/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI460950A/muscovy duck/Vietnam/LBM399/2013 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI460942A/muscovy duck/Vietnam/LBM398/2013 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI438144A/muscovy duck/Vietnam/LBM315/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI425930A/duck/Vietnam/NCVD-1544/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI425922A/duck/Vietnam/NCVD-1547/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI425679A/duck/Vietnam/NCVD-1593/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI425311A/duck/Vietnam/NCVD-1904/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI425143A/duck/Vietnam/NCVD-1933/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI424991A/duck/Vietnam/NCVD-1607/2012 (A/H5N1) segment 6 (NA)1327.00.000000e+00757/776 (97%)EPI559153A/chicken/Vietnam/NCVD-KA432/2013 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI559147A/chicken/Vietnam/NCVD-KA365/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI559144A/duck/Vietnam/NCVD-KA311/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI559139A/muscovy duck/Vietnam/NCVD-KA286/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI559137A/duck/Vietnam/NCVD-KA262/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI545517A/duck/Khanhhoa/CVVI-45/2014 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI545516A/chicken/Khanhhoa/CVVI-44/2014 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI545513A/chicken/Khanhhoa/CVVI-41/2014 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI545501A/duck/Khanhhoa/CVVI-29/2014 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI545498A/duck/Khanhhoa/CVVI-26/2014 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI462790A/mynah/Austria-quarantine/13063485-025/13 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI425647A/duck/Vietnam/NCVD-1936/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI425639A/duck/Vietnam/NCVD-1931/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI425183A/duck/Vietnam/NCVD-1944/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI425111A/duck/Vietnam/NCVD-1943/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI425015A/duck/Vietnam/NCVD-1878/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI424703A/duck/Vietnam/NCVD-1869/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI424687A/duck/Vietnam/NCVD-1974/2012 (A/H5N1) segment 6 (NA)1321.50.000000e+00756/776 (97%)EPI462792A/mynah/Austria-quarantine/13063485-026/13 (A/H5N1) segment 6 (NA)1317.80.000000e+00755/776 (97%)EPI559146A/duck/Vietnam/NCVD-KA345/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI559145A/duck/Vietnam/NCVD-KA324/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545515A/chicken/Khanhhoa/CVVI-43/2014 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545510A/duck/Khanhhoa/CVVI-38/2014 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545509A/duck/Khanhhoa/CVVI-37/2014 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545507A/duck/Khanhhoa/CVVI-35/2014 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545502A/duck/Khanhhoa/CVVI-30/2014 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545493A/duck/Khanhhoa/CVVI-21/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545492A/duck/Khanhhoa/CVVI-20/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545482A/duck/Khanhhoa/CVVI-10/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545479A/duck/Khanhhoa/CVVI-07/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545478A/duck/Khanhhoa/CVVI-06/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545475A/duck/Khanhhoa/CVVI-03/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI545474A/chicken/Khanhhoa/CVVI-02/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI489679A/tiger/Jiangsu/01/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI461538A/muscovy duck/Vietnam/LBM344/2013 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425938A/duck/Vietnam/NCVD-1875/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425671A/duck/Vietnam/NCVD-1905/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425303A/duck/Vietnam/NCVD-1902/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425271A/duck/Vietnam/NCVD-1901/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425175A/chicken/Vietnam/NCVD-1942/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425151A/duck/Vietnam/NCVD-1935/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425135A/duck/Vietnam/NCVD-1899/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI425023A/duck/Vietnam/NCVD-1884/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI424727A/duck/Vietnam/NCVD-1898/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI424719A/duck/Vietnam/NCVD-1897/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI424711A/duck/Vietnam/NCVD-1896/2012 (A/H5N1) segment 6 (NA)1315.90.000000e+00755/776 (97%)EPI589837A/duck/Quang Ninh/15c111/2013 (A/H5N1) segment 6 (NA)1312.20.000000e+00753/774 (97%)EPI589831A/muscovy duck/Quang Ninh/7c121/2013 (A/H5N1) segment 6 (NA)1312.20.000000e+00753/774 (97%)EPI459249A/muscovy duck/Quanh Ninh/9/2013 (A/H5N1) segment 6 (NA)1312.20.000000e+00753/774 (97%)EPI459241A/muscovy duck/Quanh Ninh/6/2013 (A/H5N1) segment 6 (NA)1312.20.000000e+00753/774 (97%)EPI425487A/duck/Vietnam/NCVD-927/2011 (A/H5N1) segment 6 (NA)1312.20.000000e+00754/776 (97%)EPI567039A/muscovy duck/Quang Ninh/48c1-4-1/2013 (A/H5N1) segment 6 (NA)1310.40.000000e+00754/776 (97%)EPI559160A/chicken/Vietnam/NCVD-A937/2011 (A/H5N1) segment 6 (NA)1310.40.000000e+00754/776 (97%)EPI545519A/duck/Phuyen/CVVI-47/2014 (A/H5N1) segment 6 (NA)1310.40.000000e+00755/777 (97%)EPI545518A/duck/Khanhhoa/CVVI-46/2014 (A/H5N1) segment 6 (NA)1310.40.000000e+00754/776 (97%)EPI545506A/duck/Khanhhoa/CVVI-34/2014 (A/H5N1) segment 6 (NA)1310.40.000000e+00754/776 (97%)EPI545503A/chicken/Khanhhoa/CVVI-31/2014 (A/H5N1) segment 6 (NA)1310.40.000000e+00755/777 (97%)EPI545495A/duck/Khanhhoa/CVVI-23/2013 (A/H5N1) segment 6 (NA)1310.40.000000e+00754/776 (97%)EPI545494A/duck/Khanhhoa/CVVI-22/2013 (A/H5N1) segment 6 (NA)1310.40.000000e+00754/776 (97%)Alignments
  13. niman
    LOCUS KT070697 775 bp cRNA linear VRL 01-JUL-2015 DEFINITION Influenza A virus (A/chicken/Iraq/KCVL-I/2015(H5N1)) segment 6 neuraminidase (NA) gene, partial cds. ACCESSION KT070697 VERSION KT070697.1 GI:851895716 KEYWORDS . SOURCE Influenza A virus (A/chicken/Iraq/KCVL-I/2015(H5N1)) ORGANISM Influenza A virus (A/chicken/Iraq/KCVL-I/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 775) AUTHORS Dizayee,B.A., Khlef,E.L. and Sdeq,D.O. TITLE Direct Submission JOURNAL Submitted (07-JUN-2015) PCR Department, Central Veterinary Laboratory in Kurdistan Region, Nishtiman Qs., Erbil, Kurdistan 00044, Iraq COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..775 /organism="Influenza A virus (A/chicken/Iraq/KCVL-I/2015(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Iraq/KCVL-I/2015" /serotype="H5N1" /host="chicken" /db_xref="taxon:1665629" /segment="6" /country="Iraq" /collection_date="07-May-2015" gene <1..>775 /gene="NA" CDS <1..>775 /gene="NA" /codon_start=3 /product="neuraminidase" /protein_id="AKN58566.1" /db_xref="GI:851895717" /translation="AWSASACHDGTSWLKIEIPGPDNGAVAVLKYNGIITDTIKSWRN NILRTQESECACVNGSCFTVMTDGPSNGQASYKIFKIEKGKVVKSVELNAPNYHYEEC SCYPEAGEIICVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCGP VSSNGAYGVKGFSFKYGNGVWIGRTKSTHSRSGFEMIWDPNGGNLTDSEFSMKQDIVA ITDWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKEST" ORIGIN 1 ttgcttggtc agcaagtgct tgccatgatg gcaccagttg gttgaaaatt gaaattcctg 61 gtccagacaa tggggctgtg gcggtattga aatacaatgg cataataaca gacactatca 121 agagttggag gaataacata ctgaggaccc aagagtctga atgtgcatgt gtgaatggct 181 cttgctttac tgttatgaca gatggaccaa gtaatgggca ggcatcatat aagattttca 241 aaatagaaaa agggaaagta gttaagtcag tcgaattgaa tgcccccaat tatcactatg 301 aggaatgctc ctgttatcct gaggctggcg aaatcatatg tgtgtgcagg gataattggc 361 atggctcaaa caggccatgg gtgtctttca atcagaattt ggagtatcaa ataggatata 421 tttgcagtgg agttttcggt gacaatccac ggccgaatga cggtacaggg agttgtggac 481 cagtgtcctc taacggggca tatggggtaa aagggttctc atttaaatat ggcaatggtg 541 tctggatcgg gaggaccaaa agcactcatt ccaggagcgg ctttgaaatg atttgggatc 601 caaatggggg gaacttgacg gacagtgaat tttcgatgaa acaagatata gtagcaataa 661 ctgattggtc aggatatagc gggagttttg tccagcatcc agaactgaca ggattagatt 721 gcataagacc ttgcttctgg gttgagttaa tcagagggcg gcccaaagag agcac
  14. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621545A/turkey/Iraq/KCVL-III/2015 (A/H5N1) segment 6 (NA)1127.60.000000e+00610/610 (100%)EPI621544A/chicken/Iraq/KCVL-II/2015 (A/H5N1) segment 6 (NA)1105.40.000000e+00603/605 (99%)EPI621543A/chicken/Iraq/KCVL-I/2015 (A/H5N1) segment 6 (NA)1101.70.000000e+00604/608 (99%)EPI621174A/chicken/Jiangsu/2477/2014 (A/H5N1) segment 6 (NA)1099.90.000000e+00605/610 (99%)EPI567305A/chicken/Nigeria/15VIR339-2/2015 (A/H5N1) segment 6 (NA)1094.30.000000e+00604/610 (99%)EPI500773A/Alberta/01/2014 (A/H5N1) segment 6 (NA)1074.00.000000e+00600/610 (98%)EPI559154A/chicken/Vietnam/NCVD-KA435/2013 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI559149A/muscovy duck/Vietnam/NCVD-KA395/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI559141A/duck/Vietnam/NCVD-KA300/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI545491A/duck/Khanhhoa/CVVI-19/2013 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI503722A/Japanese white-eye/Taoyuan/Q454/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI438144A/muscovy duck/Vietnam/LBM315/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI425687A/duck/Vietnam/NCVD-1602/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI425655A/duck/Vietnam/NCVD-1968/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI425631A/duck/Vietnam/NCVD-1928/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI425623A/duck/Vietnam/NCVD-1930/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI425311A/duck/Vietnam/NCVD-1904/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI425159A/duck/Vietnam/NCVD-1937/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424983A/duck/Vietnam/NCVD-1584/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424743A/duck/Vietnam/NCVD-1932/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424735A/chicken/Vietnam/NCVD-1927/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424198A/muscovy duck/Vietnam/LBM230/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424190A/muscovy duck/Vietnam/LBM229/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424182A/muscovy duck/Vietnam/LBM228/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI424174A/muscovy duck/Vietnam/LBM227/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI417809A/duck/Vietnam/OIE-2212/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI417798A/duck/Vietnam/OIE-2236/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI417780A/duck/Vietnam/OIE-2211/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI408417A/duck/Vietnam/OIE-2202/2012 (A/H5N1) segment 6 (NA)1061.10.000000e+00598/610 (98%)EPI559153A/chicken/Vietnam/NCVD-KA432/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI559147A/chicken/Vietnam/NCVD-KA365/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI559144A/duck/Vietnam/NCVD-KA311/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI559139A/muscovy duck/Vietnam/NCVD-KA286/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI559138A/chicken/Vietnam/NCVD-KA275/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI559137A/duck/Vietnam/NCVD-KA262/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545517A/duck/Khanhhoa/CVVI-45/2014 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545516A/chicken/Khanhhoa/CVVI-44/2014 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545514A/chicken/Khanhhoa/CVVI-42/2014 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545512A/chicken/Khanhhoa/CVVI-40/2014 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545511A/chicken/Khanhhoa/CVVI-39/2014 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545498A/duck/Khanhhoa/CVVI-26/2014 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545492A/duck/Khanhhoa/CVVI-20/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545482A/duck/Khanhhoa/CVVI-10/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545479A/duck/Khanhhoa/CVVI-07/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545475A/duck/Khanhhoa/CVVI-03/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI545474A/chicken/Khanhhoa/CVVI-02/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI531374A/hill myna/Heilongjiang/0704/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI461024A/duck/Vietnam/QB1207/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI460950A/muscovy duck/Vietnam/LBM399/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI460942A/muscovy duck/Vietnam/LBM398/2013 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425930A/duck/Vietnam/NCVD-1544/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425922A/duck/Vietnam/NCVD-1547/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425679A/duck/Vietnam/NCVD-1593/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425647A/duck/Vietnam/NCVD-1936/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425639A/duck/Vietnam/NCVD-1931/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425271A/duck/Vietnam/NCVD-1901/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425183A/duck/Vietnam/NCVD-1944/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425143A/duck/Vietnam/NCVD-1933/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI425015A/duck/Vietnam/NCVD-1878/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI424991A/duck/Vietnam/NCVD-1607/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI424703A/duck/Vietnam/NCVD-1869/2012 (A/H5N1) segment 6 (NA)1055.60.000000e+00597/610 (97%)EPI589837A/duck/Quang Ninh/15c111/2013 (A/H5N1) segment 6 (NA)1051.90.000000e+00595/608 (97%)EPI589831A/muscovy duck/Quang Ninh/7c121/2013 (A/H5N1) segment 6 (NA)1051.90.000000e+00595/608 (97%)EPI459249A/muscovy duck/Quanh Ninh/9/2013 (A/H5N1) segment 6 (NA)1051.90.000000e+00595/608 (97%)EPI459241A/muscovy duck/Quanh Ninh/6/2013 (A/H5N1) segment 6 (NA)1051.90.000000e+00595/608 (97%)EPI559146A/duck/Vietnam/NCVD-KA345/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI559145A/duck/Vietnam/NCVD-KA324/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545513A/chicken/Khanhhoa/CVVI-41/2014 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545501A/duck/Khanhhoa/CVVI-29/2014 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545495A/duck/Khanhhoa/CVVI-23/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545494A/duck/Khanhhoa/CVVI-22/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545493A/duck/Khanhhoa/CVVI-21/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545486A/duck/Khanhhoa/CVVI-14/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545485A/chicken/Khanhhoa/CVVI-13/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545484A/chicken/Khanhhoa/CVVI-12/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545483A/chicken/Khanhhoa/CVVI-11/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI545480A/duck/Khanhhoa/CVVI-08/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI462794A/mynah/Austria-quarantine/13064792-010/13 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI461538A/muscovy duck/Vietnam/LBM344/2013 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI438152A/muscovy duck/Vietnam/LBM295/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425938A/duck/Vietnam/NCVD-1875/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425671A/duck/Vietnam/NCVD-1905/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425303A/duck/Vietnam/NCVD-1902/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425175A/chicken/Vietnam/NCVD-1942/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425151A/duck/Vietnam/NCVD-1935/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425135A/duck/Vietnam/NCVD-1899/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425111A/duck/Vietnam/NCVD-1943/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425023A/duck/Vietnam/NCVD-1884/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI424727A/duck/Vietnam/NCVD-1898/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI424719A/duck/Vietnam/NCVD-1897/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI424711A/duck/Vietnam/NCVD-1896/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI424687A/duck/Vietnam/NCVD-1974/2012 (A/H5N1) segment 6 (NA)1050.00.000000e+00596/610 (97%)EPI425103A/duck/Vietnam/NCVD-1497/2012 (A/H5N1) segment 6 (NA)1046.30.000000e+00594/608 (97%)EPI545518A/duck/Khanhhoa/CVVI-46/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)EPI545515A/chicken/Khanhhoa/CVVI-43/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)EPI545510A/duck/Khanhhoa/CVVI-38/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)EPI545509A/duck/Khanhhoa/CVVI-37/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)EPI545507A/duck/Khanhhoa/CVVI-35/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)EPI545506A/duck/Khanhhoa/CVVI-34/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)EPI545502A/duck/Khanhhoa/CVVI-30/2014 (A/H5N1) segment 6 (NA)1044.50.000000e+00595/610 (97%)Alignments
  15. niman
    LOCUS KT070699 610 bp cRNA linear VRL 01-JUL-2015 DEFINITION Influenza A virus (A/turkey/Iraq/KCVL-III/2015(H5N1)) segment 6 neuraminidase (NA) gene, partial cds. ACCESSION KT070699 VERSION KT070699.1 GI:851895770 KEYWORDS . SOURCE Influenza A virus (A/turkey/Iraq/KCVL-III/2015(H5N1)) ORGANISM Influenza A virus (A/turkey/Iraq/KCVL-III/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 610) AUTHORS Dizayee,B.A., Khlef,E.L. and Sdeq,D.O. TITLE Direct Submission JOURNAL Submitted (10-JUN-2015) PCR Department, Central Veterinary Laboratory in Kurdistan Region, Nishtiman Qs., Erbil, Kurdistan 00044, Iraq COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..610 /organism="Influenza A virus (A/turkey/Iraq/KCVL-III/2015(H5N1))" /mol_type="viral cRNA" /strain="A/turkey/Iraq/KCVL-III/2015" /serotype="H5N1" /host="turkey" /db_xref="taxon:1665631" /segment="6" /country="Iraq" /collection_date="06-May-2015" gene <1..>610 /gene="NA" CDS <1..>610 /gene="NA" /codon_start=3 /product="neuraminidase" /protein_id="AKN58568.1" /db_xref="GI:851895771" /translation="AWSASACHDGTSWLTIGISGPDNGAVAVLKYNGIITDTIKSWRN NILRTQESECACVNGSCFTVMTDGPSNGQASYKIFKIEKGKVVKSVELNAPNYHYEEC SCYPEAGEIICVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVFGDNPRPNDGTGSCGP VSSNGAYGVKGFSFKYGNGVWIGRTKSTHSRSGFEMIWDPNG" ORIGIN 1 ttgcttggtc agcaagtgct tgccatgatg gcaccagttg gttgacaatt gggatttctg 61 gtccagacaa tggggctgtg gcggtattga aatacaatgg cataataaca gacactatca 121 agagttggag gaataacata ctgaggaccc aagagtctga atgtgcatgt gtgaatggct 181 cttgctttac tgttatgaca gatggaccaa gtaatgggca ggcatcatat aagattttca 241 aaatagaaaa agggaaagta gttaagtcag tcgaattgaa tgcccccaat tatcactatg 301 aggaatgctc ctgttatcct gaggctggcg aaatcatatg tgtgtgcagg gataattggc 361 atggctcaaa caggccatgg gtgtctttca atcagaattt ggagtatcaa ataggatata 421 tttgcagtgg agttttcggt gacaatccac ggccgaatga cggtacaggg agttgtggac 481 cagtgtcctc taacggggca tatggggtaa aagggttctc atttaaatat ggcaatggtg 541 tctggatcgg gaggaccaaa agcactcatt ccaggagcgg ctttgaaatg atttgggatc 601 caaatgggtg
  16. niman
    Central Veterinary Laboratory in Kurdistan Region in Iraq has released N1 sequences from H5N1` poultry collections in May 2015 which match 2015 clade 2.3.2 sequences.
  17. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621131A/Quzhou/2/2015 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI621124A/Quzhou/1/2015 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI621119A/chicken/Quzhou/2/2015 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI566070A/Jiangsu/06306/2014 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620203A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620196A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620189A/Anhui/1-JCVI1_RG2/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620182A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620171A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620164A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620157A/Anhui/1-BALF_RG7/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620146A/Anhui/1-BALF_RG20/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620139A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620132A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620125A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620122A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620115A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620108A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620101A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620096A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620089A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620082A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620075A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620068A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620057A/Anhui/1-BALF_RG1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620050A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620043A/Anhui/1-BALF_RG5/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620036A/Anhui/1-BALF_RG4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620029A/Anhui/1-BALF_RG3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620022A/Anhui/1-BALF_RG2/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI619988A/Anhui/1-BALF_RG33/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI615185A/chicken/Wuxi/04030201G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI615182A/duck/Wuxi/0405006G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613839A/Anhui/DEWH72-05/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613832A/Anhui/DEWH72-04/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613818A/Anhui/DEWH72-02/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613811A/Anhui/DEWH72-01/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613780A/Anhui/DEWH72-07/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613773A/Anhui/DEWH72-06/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI576584A/chicken/Guangdong/G1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI576582A/chicken/Guangdong/3135/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI568651A/Shanghai/02/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI545806A/pigeon/Wuxi/0405007G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI545799A/duck/Sunan/040802G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI535173A/Hangzhou/49/2014 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI531122A/Anhui/1-DEWH730/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI530821A/Taiwan/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI515800A/Chicken/Suzhou/097-1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI504723A/Shanghai/5190T/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI504718A/Shanghai/5190T/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI498091A/environment/Suzhou/14/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497922A/Nanjing/7/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497898A/Suzhou/3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497877A/Wuxi/4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497840A/environment/Zhenjiang/4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI492275A/environment/Zhejiang/14/2013 (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI492268A/environment/Zhejiang/13/2013 (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI492261A/environment/Zhejiang/09/2013 (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI487904A/chicken/Zhejiang/PA-DTID-ZJU01/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI477315A/Changsha/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI473797A/environment/Hangzhou/34-2/2013(H9N2) (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI471843A/chicken/Shanghai/019/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI469515A/chicken/Rizhao/515/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI468348A/environment/Hangzhou/109-2/2013(H5N1) (A/H5N1) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464588A/Huzhou/5/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464587A/Huzhou/4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464585A/Huzhou/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464584A/Environment/Huzhou/C58/2013 (A/H9N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464582A/Chicken/Huzhou/C73/2013 (A/H9N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464581A/Chicken/Huzhou/C72/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464580A/Chicken/Huzhou/C54/2013 (A/H7) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI461481A/Nanchang/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI460779A/Nanjing/5/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI460771A/Nanjing/3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457879A/chicken/Guangdong/SD641/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457871A/chicken/Jiangsu/S002/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457855A/chicken/Jiangsu/SC099/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457847A/chicken/Jiangsu/SC537/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457831A/chicken/Shanghai/S1055/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457823A/chicken/Shanghai/S1076/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457815A/chicken/Shanghai/S1077/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457807A/chicken/Shanghai/S1078/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457799A/chicken/Shanghai/S1079/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457783A/chicken/Shanghai/S1358/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457775A/chicken/Shanghai/S1410/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457767A/chicken/Shanghai/S1413/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457751A/chicken/Zhejiang/SD019/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457743A/chicken/Zhejiang/SD033/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457727A/duck/Zhejiang/SC410/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457719A/environment/Fujian/SC337/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457711A/environment/Henan/SC232/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457703A/environment/Henan/SD429/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457695A/environment/Shandong/SD038/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457639A/homing pigeon/Jiangsu/SD184/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457631A/pigeon/Shanghai/S1421/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457623A/pigeon/Shanghai/S1423/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI451276A/Shanghai/Patient6/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI451258A/Shanghai/Patient2/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI451018A/Shanghai/patient1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI448940A/Shanghai/02/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)
  18. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621118A/chicken/Quzhou/2/2015 (A/H7N9) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI621130A/Quzhou/2/2015 (A/H7N9) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI621123A/Quzhou/1/2015 (A/H7N9) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI592509A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593560A/chicken/Jiangxi/18517/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593389A/chicken/Jiangxi/18012/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593382A/chicken/Jiangxi/18008/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593175A/chicken/Jiangxi/14530/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593168A/chicken/Jiangxi/14518/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593147A/chicken/Jiangxi/14513/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592653A/chicken/Jiangxi/14482/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592608A/chicken/Jiangxi/13554/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592593A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592578A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592569A/chicken/Jiangxi/13540/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592525A/chicken/Jiangxi/13525/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592516A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592485A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592461A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592282A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592275A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593549A/chicken/Jiangxi/18515/2014 (A/H7N9) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593498A/chicken/Jiangxi/18487/2014 (A/H7N9) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593477A/chicken/Jiangxi/18483/2014 (A/H0) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593470A/chicken/Jiangxi/18482/2014 (A/H7N9) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI592533A/chicken/Jiangxi/13526/2014 (A/H0) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI592245A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593609A/chicken/Jiangxi/18527/2014 (A/H0) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI593582A/chicken/Jiangxi/18524/2014 (A/H0) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI593542A/chicken/Jiangxi/18513/2014 (A/H7N9) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI593462A/chicken/Jiangxi/18476/2014 (A/H0) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI593450A/chicken/Jiangxi/18470/2014 (A/H0) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI593406A/chicken/Jiangxi/18449/2014 (A/H7N9) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI531803A/Taiwan/2/2014 (A/H7N9) segment 5 (NP)2688.00.000000e+001483/1497 (99%)EPI593509A/chicken/Jiangxi/18491/2014 (A/H0) segment 5 (NP)2684.30.000000e+001479/1492 (99%)EPI593427A/chicken/Jiangxi/18466/2014 (A/H0) segment 5 (NP)2684.30.000000e+001481/1495 (99%)EPI576576A/chicken/Guangdong/3135/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI447717A/Shandong/01/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI593622A/chicken/Jiangxi/19426/2014 (A/H0) segment 5 (NP)2678.80.000000e+001480/1495 (98%)EPI620202A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620195A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620188A/Anhui/1-JCVI1_RG2/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620181A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620177A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620170A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620163A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620156A/Anhui/1-BALF_RG7/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620145A/Anhui/1-BALF_RG20/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620138A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620131A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620121A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620114A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620107A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620100A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620095A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620088A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620081A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620074A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620067A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620063A/Anhui/1-BALF_RG2/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620056A/Anhui/1-BALF_RG1/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620049A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620042A/Anhui/1-BALF_RG5/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620035A/Anhui/1-BALF_RG4/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI620028A/Anhui/1-BALF_RG3/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI619987A/Anhui/1-BALF_RG33/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613838A/Anhui/DEWH72-05/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613831A/Anhui/DEWH72-04/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613824A/Anhui/DEWH72-03/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613817A/Anhui/DEWH72-02/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613810A/Anhui/DEWH72-01/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613793A/Anhui/DEWH72-09/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613786A/Anhui/DEWH72-08/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI613779A/Anhui/DEWH72-07/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI583022A/chicken/Huzhou/4169/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI583008A/chicken/Huzhou/4083/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582992A/chicken/Huzhou/4079/2013 (A/H0) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582984A/chicken/Huzhou/4076/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582967A/chicken/Huzhou/4074/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582953A/chicken/Huzhou/4069/2013 (A/H0) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582945A/chicken/Huzhou/4067/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582930A/chicken/Huzhou/4034/2013 (A/H0) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582921A/chicken/Huzhou/3977/2013 (A/H0) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582906A/chicken/Huzhou/3802/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI582348A/chicken/Huzhou/3765/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI576577A/chicken/Guangdong/3640/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI568649A/Shanghai/02/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI566109A/Xinjiang/98692/2014 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI566093A/XinjiangBintuan/99117/2014 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI566061A/Xinjiang/05845/2015 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI566053A/Environment/Xinjiang/98679/2014 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI566045A/Xinjiang/05916/2014 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI532343A/chicken/Zhejiang/C497/2013 (A/H9N2) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI532341A/chicken/Zhejiang/C487/2013 (A/H9N2) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI531121A/Anhui/1-DEWH730/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI530825A/Taiwan/1/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI508927A/tree sparrow/Shanghai/01/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI498088A/environment/Suzhou/14/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI497919A/Nanjing/7/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)EPI497866A/Wuxi/3/2013 (A/H7N9) segment 5 (NP)2676.90.000000e+001481/1497 (98%)
  19. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621117A/chicken/Quzhou/2/2015 (A/H7N9) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI566071A/Jiangsu/06306/2014 (A/H7N9) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI621129A/Quzhou/2/2015 (A/H7N9) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI621122A/Quzhou/1/2015 (A/H7N9) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI593614A/chicken/Jiangxi/18527/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593576A/chicken/Jiangxi/18523/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593551A/chicken/Jiangxi/18515/2014 (A/H7N9) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593513A/chicken/Jiangxi/18491/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593479A/chicken/Jiangxi/18483/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593472A/chicken/Jiangxi/18482/2014 (A/H7N9) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593430A/chicken/Jiangxi/18466/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593408A/chicken/Jiangxi/18449/2014 (A/H7N9) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593441A/chicken/Jiangxi/18468/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI583126A/chicken/Shaoxing/5186/2013 (A/H7N9) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI566126A/Fujian/09273/2015 (A/H7N9) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI531804A/Taiwan/2/2014 (A/H7N9) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI529239A/wild chicken/Shanghai/C1/2014 (A/H9N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI602002A/black chicken/Jiangxi/10139/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI601992A/black chicken/Jiangxi/10136/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI601974A/chicken/Jiangxi/10122/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI601533A/chicken/Jiangxi/23772/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI599582A/chicken/Jiangxi/29099/2013 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI594412A/chicken/Rizhao/2658/2013 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI594363A/chicken/Qingdao/2044/2013 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI593565A/chicken/Jiangxi/18517/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI593273A/chicken/Jiangxi/15520/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI593256A/chicken/Jiangxi/15492/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI593133A/chicken/Jiangxi/14502/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI592006A/silkie chicken/Shaoxing/5371/2013 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI583857A/chicken/Rizhao/3052/2013 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI583638A/chicken/Dongguan/3186/2013 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI576626A/environment/Shanghai/PD-JZ-01/2014 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI566079A/Guizhou/03240/2015 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI560401A/British Columbia/1/2015 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530501A/Environment/Jiangxi/10663/2014 (A/H9N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI497876A/Wuxi/4/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI497860A/Zhenjiang/1/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI497817A/Nanjing/2/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI469533A/Jiangsu/1/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468969A/Jiangsu/1/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI467339A/environment/Wuxi/1/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI460770A/Nanjing/3/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457872A/chicken/Jiangsu/S002/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457856A/chicken/Jiangsu/SC099/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457784A/chicken/Shanghai/S1358/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457656A/environment/Shanghai/S1438/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI453610A/environment/Nanjing/2913/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI453607A/Nanjing/1/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447915A/Jiangsu/01/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447855A/jiangsu/03/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447841A/Jiangsu/04/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446459A/Hangzhou/3/2013 (A/H7N9) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI601611A/chicken/Jiangxi/1288/2014 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI599784A/chicken/Jiangxi/34682/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI599680A/chicken/Jiangxi/1202/2014 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI594404A/chicken/Yantai/2529/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI594377A/chicken/Yantai/2243/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI592013A/chicken/Shaoxing/5453/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI591998A/chicken/Shaoxing/5195/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI591990A/chicken/Shaoxing/5088/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI583787A/chicken/Yantai/2469/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI583780A/chicken/Yantai/2468/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI583456A/chicken/Shenzhen/1426/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI583342A/chicken/Shenzhen/1519/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI583133A/chicken/Shaoxing/5201/2013 (A/H7N9) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI530507A/Environment/Jiangxi/10664/2014 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI470072A/chicken/Rizhao/1436/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI470071A/chicken/Rizhao/1363/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI470070A/chicken/Rizhao/1339/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI470068A/chicken/Rizhao/853/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI465416A/Enviroment/Zhenjiang/h9/2013 (A/H9N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457672A/environment/Shanghai/S1436/2013 (A/H7N9) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI453481A/Zhejiang/HZ1/2013 (A/H7N9) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI591973A/chicken/Suzhou/4833/2013 (A/H0) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI597112A/chicken/Dongguan/1525/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI594384A/chicken/Yantai/2303/2013 (A/H9N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI594370A/chicken/Qingdao/2144/2013 (A/H9N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI593492A/chicken/Jiangxi/18486/2014 (A/H0) segment 7 (MP)1770.20.000000e+00972/982 (98%)EPI593375A/chicken/Jiangxi/17989/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI593177A/chicken/Jiangxi/14530/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI593170A/chicken/Jiangxi/14518/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI593149A/chicken/Jiangxi/14513/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592611A/chicken/Jiangxi/13554/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592595A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592580A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592535A/chicken/Jiangxi/13526/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592527A/chicken/Jiangxi/13525/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592518A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592511A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592487A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592463A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592284A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592277A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592254A/chicken/Jiangxi/13518/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592247A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI592233A/chicken/Jiangxi/13502/2014 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI583075A/chicken/Jiaxing/4490/2013 (A/H7N9) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI582933A/chicken/Huzhou/4034/2013 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573380A/chicken/Shanghai/014/2014 (A/H9N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI568617A/chicken/Beijing/1115/2013 (A/H9N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)
  20. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621116A/chicken/Quzhou/2/2015 (A/H7N9) segment 6 (NA)2582.70.000000e+001398/1398 (100%)EPI621128A/Quzhou/2/2015 (A/H7N9) segment 6 (NA)2571.70.000000e+001396/1398 (99%)EPI621121A/Quzhou/1/2015 (A/H7N9) segment 6 (NA)2560.60.000000e+001394/1398 (99%)EPI566075A/Jiangsu/06306/2014 (A/H7N9) segment 6 (NA)2538.40.000000e+001390/1398 (99%)EPI593638A/chicken/Jiangxi/19463/2014 (A/H0) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI593625A/chicken/Jiangxi/19426/2014 (A/H0) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI593383A/chicken/Jiangxi/18008/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592610A/chicken/Jiangxi/13554/2014 (A/H0) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592594A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592579A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592570A/chicken/Jiangxi/13540/2014 (A/H0) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592534A/chicken/Jiangxi/13526/2014 (A/H0) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592526A/chicken/Jiangxi/13525/2014 (A/H0) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592517A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592510A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592486A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592462A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592283A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI592246A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI521919A/Taiwan/2/2014 (A/H7N9) segment 6 (NA)2521.80.000000e+001387/1398 (99%)EPI593583A/chicken/Jiangxi/18524/2014 (A/H0) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI593543A/chicken/Jiangxi/18513/2014 (A/H7N9) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI593453A/chicken/Jiangxi/18470/2014 (A/H0) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI593400A/chicken/Jiangxi/18035/2014 (A/H0) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI593132A/chicken/Jiangxi/14502/2014 (A/H0) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI592276A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI566137A/Jiangsu/06307/2014 (A/H7N9) segment 6 (NA)2516.30.000000e+001386/1398 (99%)EPI593526A/chicken/Jiangxi/18500/2014 (A/H0) segment 6 (NA)2510.70.000000e+001385/1398 (99%)EPI593255A/chicken/Jiangxi/15492/2014 (A/H0) segment 6 (NA)2510.70.000000e+001385/1398 (99%)EPI593176A/chicken/Jiangxi/14530/2014 (A/H7N9) segment 6 (NA)2510.70.000000e+001385/1398 (99%)EPI593169A/chicken/Jiangxi/14518/2014 (A/H7N9) segment 6 (NA)2510.70.000000e+001385/1398 (99%)EPI566130A/Fujian/09273/2015 (A/H7N9) segment 6 (NA)2510.70.000000e+001385/1398 (99%)EPI566099A/XinjiangBintuan/99117/2014 (A/H7N9) segment 6 (NA)2510.70.000000e+001385/1398 (99%)EPI566083A/Guizhou/03240/2015 (A/H7N9) segment 6 (NA)2505.20.000000e+001384/1398 (98%)EPI566059A/Environment/Xinjiang/98679/2014 (A/H7N9) segment 6 (NA)2505.20.000000e+001384/1398 (98%)EPI552401A/Zhejiang/17/2014 (A/H7N9) segment 6 (NA)2505.20.000000e+001384/1398 (98%)EPI566115A/Xinjiang/98692/2014 (A/H7N9) segment 6 (NA)2499.60.000000e+001383/1398 (98%)EPI566067A/Xinjiang/05845/2015 (A/H7N9) segment 6 (NA)2499.60.000000e+001383/1398 (98%)EPI566051A/Xinjiang/05916/2014 (A/H7N9) segment 6 (NA)2499.60.000000e+001383/1398 (98%)EPI541776A/Taiwan/3/2013 (A/H7N9) segment 6 (NA)2499.60.000000e+001383/1398 (98%)EPI535130A/Jiaxing/20/2014 (A/H7N9) segment 6 (NA)2499.60.000000e+001383/1398 (98%)EPI531470A/Shanghai/01/2014 (A/H7N9) segment 6 (NA)2499.60.000000e+001383/1398 (98%)EPI578031A/Shenzhen/SP118/2014 (A/H7N9) segment 6 (NA)2494.10.000000e+001382/1398 (98%)EPI566107A/XinjiangBintuan/99118/2014 (A/H7N9) segment 6 (NA)2494.10.000000e+001382/1398 (98%)EPI566043A/Guangdong/15SF010/2015 (A/H7N9) segment 6 (NA)2494.10.000000e+001382/1398 (98%)EPI534951A/Shanghai/Mix1/2014 (A/H0) segment 6 (NA)2494.10.000000e+001382/1398 (98%)EPI615187A/duck/Wuxi/04030204GH/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI597593A/chicken/Dongguan/1433/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI597476A/chicken/Dongguan/1188/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI597435A/silkie chicken/Dongguan/994/2014 (A/H0) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI597119A/chicken/Dongguan/1526/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI597086A/silkie chicken/Dongguan/1516/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI596962A/silkie chicken/Dongguan/1268/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI596791A/chicken/Dongguan/449/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI585980A/Shanghai/ION/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI583230A/Shenzhen/SP4/2014 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI581834A/silkie chicken/Dongguan/3605/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI577961A/chicken/Shenzhen/2110/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI577920A/chicken/Shenzhen/749/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI577906A/chicken/Shenzhen/742/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI576574A/chicken/Guangdong/G3/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI545790A/chicken/Suzhou/040201H/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI542313A/Shanghai/MH01/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI532294A/pigeon/Zhejiang/P1/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI532270A/chicken/Zhejiang/C481/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI515798A/Chicken/Suzhou/097-1/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI508928A/tree sparrow/Shanghai/01/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI503501A/Huizhou/01/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI497912A/Suzhou/5/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI497896A/Suzhou/3/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI497875A/Wuxi/4/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI497867A/Wuxi/3/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI487903A/chicken/Zhejiang/PA-DTID-ZJU01/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI476703A/Guangdong/1/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI471838A/chicken/Shanghai/017/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI460753A/Nanjing/f0874/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457780A/chicken/Shanghai/S1410/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457748A/chicken/Zhejiang/SD033/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457676A/environment/Shanghai/S1436/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457668A/environment/Shanghai/S1437/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457660A/environment/Shanghai/S1438/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457652A/environment/Shanghai/S1439/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457644A/homing pigeon/Jiangsu/SD184/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI457620A/wild pigeon/Jiangsu/SD001/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI451234A/chicken/Zhejiang/C11/2013 (A/H9N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI450527A/Nanjing/M2/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447772A/Shanghai/14/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447765A/Shanghai/17/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447758A/Shanghai/8/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447744A/Zhejiang/02/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447716A/Shandong/01/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447674A/Jiangsu/06/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447639A/Anhui/02/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI447632A/Anhui/03/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI443677A/environment/Hangzhou/109-1/2013(H7N9) (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI443653A/environment/Hangzhou/37/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI443044A/Zhejiang/2/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI443026A/Shanghai/4/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI443023A/Shanghai/3/2013 (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)EPI442717A/environment/Hangzhou/34-1/2013(H7N9) (A/H7N9) segment 6 (NA)2488.60.000000e+001381/1398 (98%)
  21. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621115A/chicken/Quzhou/2/2015 (A/H7N9) segment 4 (HA)3109.00.000000e+001683/1683 (100%)EPI621120A/Quzhou/1/2015 (A/H7N9) segment 4 (HA)3098.00.000000e+001681/1683 (99%)EPI592592A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 4 (HA)3098.00.000000e+001681/1683 (99%)EPI592568A/chicken/Jiangxi/13540/2014 (A/H0) segment 4 (HA)3098.00.000000e+001681/1683 (99%)EPI592460A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 4 (HA)3098.00.000000e+001681/1683 (99%)EPI592281A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 4 (HA)3098.00.000000e+001681/1683 (99%)EPI592274A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 4 (HA)3098.00.000000e+001681/1683 (99%)EPI621127A/Quzhou/2/2015 (A/H7N9) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI593581A/chicken/Jiangxi/18524/2014 (A/H0) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI593396A/chicken/Jiangxi/18035/2014 (A/H0) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI593388A/chicken/Jiangxi/18012/2014 (A/H0) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI592607A/chicken/Jiangxi/13554/2014 (A/H0) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI592532A/chicken/Jiangxi/13526/2014 (A/H0) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI592524A/chicken/Jiangxi/13525/2014 (A/H0) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI592515A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI592484A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 4 (HA)3092.40.000000e+001680/1683 (99%)EPI592508A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 4 (HA)3090.60.000000e+001679/1683 (99%)EPI593541A/chicken/Jiangxi/18513/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI593521A/chicken/Jiangxi/18500/2014 (A/H0) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI593447A/chicken/Jiangxi/18470/2014 (A/H0) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI593167A/chicken/Jiangxi/14518/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI593146A/chicken/Jiangxi/14513/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001680/1684 (99%)EPI592632A/chicken/Jiangxi/14023/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI592577A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI592244A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI566084A/Guizhou/03240/2015 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI566076A/Jiangsu/06306/2014 (A/H7N9) segment 4 (HA)3086.90.000000e+001679/1683 (99%)EPI593632A/chicken/Jiangxi/19463/2014 (A/H0) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593558A/chicken/Jiangxi/18517/2014 (A/H0) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593548A/chicken/Jiangxi/18515/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593506A/chicken/Jiangxi/18491/2014 (A/H0) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593413A/chicken/Jiangxi/18457/2014 (A/H0) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593381A/chicken/Jiangxi/18008/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593278A/chicken/Jiangxi/15524/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593244A/duck/Jiangxi/15044/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593174A/chicken/Jiangxi/14530/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI521917A/Taiwan/2/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI521915A/Taiwan/1/2014 (A/H7N9) segment 4 (HA)3081.30.000000e+001678/1683 (99%)EPI593607A/chicken/Jiangxi/18527/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593593A/chicken/Jiangxi/18526/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593570A/chicken/Jiangxi/18523/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593532A/chicken/Jiangxi/18502/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593486A/chicken/Jiangxi/18486/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593460A/chicken/Jiangxi/18476/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593437A/chicken/Jiangxi/18468/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593424A/chicken/Jiangxi/18466/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593405A/chicken/Jiangxi/18449/2014 (A/H7N9) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593372A/chicken/Jiangxi/17989/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI593251A/chicken/Jiangxi/15492/2014 (A/H0) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI566108A/XinjiangBintuan/99118/2014 (A/H7N9) segment 4 (HA)3075.80.000000e+001677/1683 (99%)EPI566138A/Jiangsu/06307/2014 (A/H7N9) segment 4 (HA)3072.10.000000e+001676/1683 (99%)EPI593620A/chicken/Jiangxi/19426/2014 (A/H0) segment 4 (HA)3070.30.000000e+001676/1683 (99%)EPI593497A/chicken/Jiangxi/18487/2014 (A/H7N9) segment 4 (HA)3070.30.000000e+001676/1683 (99%)EPI593476A/chicken/Jiangxi/18483/2014 (A/H0) segment 4 (HA)3070.30.000000e+001676/1683 (99%)EPI593469A/chicken/Jiangxi/18482/2014 (A/H7N9) segment 4 (HA)3070.30.000000e+001676/1683 (99%)EPI566131A/Fujian/09273/2015 (A/H7N9) segment 4 (HA)3070.30.000000e+001676/1683 (99%)EPI566100A/XinjiangBintuan/99117/2014 (A/H7N9) segment 4 (HA)3064.70.000000e+001675/1683 (99%)EPI552399A/Zhejiang/17/2014 (A/H7N9) segment 4 (HA)3059.20.000000e+001674/1683 (99%)EPI566052A/Xinjiang/05916/2014 (A/H7N9) segment 4 (HA)3055.50.000000e+001673/1683 (99%)EPI620178A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620174A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620149A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620135A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620128A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620111A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620092A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620085A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620078A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620071A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620064A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI620046A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI615180A/duck/Wuxi/0405006G/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI613814A/Anhui/DEWH72-02/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI566068A/Xinjiang/05845/2015 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI566060A/Environment/Xinjiang/98679/2014 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI532300A/pigeon/Zhejiang/P1/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI499887A/chicken/Jiangsu/1021/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI477402A/Zhejiang/20/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI457757A/chicken/Zhejiang/SD019/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI457733A/duck/Zhejiang/SC410/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI447630A/Anhui/03/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI447627A/Jiangsu/09/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI447619A/Fujian/01/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI447614A/Zhejiang/02/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI447608A/Shanghai/12/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI446746A/Fujian/1/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI443675A/environment/Hangzhou/109-1/2013(H7N9) (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI443042A/Zhejiang/2/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI442707A/chicken/Jiangsu/K89/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI441794A/Zhejiang/DTID-ZJU01/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI439507A/Anhui/1/2013 (A/H7N9) segment 4 (HA)3048.10.000000e+001672/1683 (99%)EPI566116A/Xinjiang/98692/2014 (A/H7N9) segment 4 (HA)3046.20.000000e+001671/1682 (99%)EPI447607A/Shanghai/11/2013 (A/H7N9) segment 4 (HA)3044.40.000000e+001671/1683 (99%)EPI620199A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)EPI620192A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)EPI620167A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)EPI620160A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)EPI620142A/Anhui/1-BALF_RG20/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)EPI620118A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)EPI620104A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 4 (HA)3042.60.000000e+001671/1683 (99%)
  22. niman
    LOCUS KR351260 1683 bp cRNA linear VRL 30-JUN-2015 DEFINITION Influenza A virus (A/chicken/Quzhou/2/2015(H7N9)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KR351260 VERSION KR351260.1 GI:823844990 KEYWORDS . SOURCE Influenza A virus (A/chicken/Quzhou/2/2015(H7N9)) ORGANISM Influenza A virus (A/chicken/Quzhou/2/2015(H7N9)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1683) AUTHORS Cao,W.-C., Fang,C.-F., Ma,M.-J., Zhan,B.-D., Lai,S.-M., Hu,Y., Yang,X.-X., Li,J., Cao,G.-P., Zhou,J.-J., Zhang,J.-M., Wang,S.-Q., Hu,X.-L., Chen,E.-F., Li,Y.-J., Yao,H.-W., Li,X.-L., Jiang,J.-F., Yi,H.-M., Xu,W.-D., Gray,G.C., Fang,L.-Q. and Cao,W.-C. TITLE Nosocomial Transmission of Avian Influenza A (H7N9) Virus in China JOURNAL Unpublished REFERENCE 2 (bases 1 to 1683) AUTHORS Cao,W.-C., Fang,C.-F., Ma,M.-J., Zhan,B.-D., Lai,S.-M., Hu,Y., Yang,X.-X., Li,J., Cao,G.-P., Zhou,J.-J., Zhang,J.-M., Wang,S.-Q., Hu,X.-L., Chen,E.-F., Li,Y.-J., Yao,H.-W., Li,X.-L., Jiang,J.-F., Yi,H.-M., Xu,W.-D., Gray,G.C., Fang,L.-Q. and Cao,W.-C. TITLE Direct Submission JOURNAL Submitted (30-APR-2015) Epidemiology department, State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 20 Dong-Da St, Fengtai District, Beijing, Beijing 100071, P. R. China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 3.0 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1683 /organism="Influenza A virus (A/chicken/Quzhou/2/2015(H7N9))" /mol_type="viral cRNA" /strain="A/chicken/Quzhou/2/2015" /serotype="H7N9" /isolation_source="feces" /host="chicken" /db_xref="taxon:1649200" /segment="4" /country="China" /collection_date="24-Feb-2015" gene 1..1683 /gene="HA" CDS 1..1683 /gene="HA" /codon_start=1 /product="hemagglutinin" /protein_id="AKI82226.1" /db_xref="GI:823844991" /translation="MNTQILVFALIAIIPTNADKICLGHHAVSNGTKVNTLTERGVEV VNATETVERTNIPRICSKGKRTVDLGQCGLLGTITGPPQCDQFLEFSADLIIERREGS DVCYPGKFVNEEALRQILRESGGIDKEAMGFTYNGIRTNGVTSACRRSGSSFYAEMKW LQSNTDNAAFPQMTKSYKNTRKSPAIIVWGIHHSVSTAEQTKLYGSGNKLVTVGSSNY QQSFVPSPGARPQVNGLSGRIDFHWLMLNPNDTVTFSFNGAFIAPDRASFLRGKSMGI QSGVQVDANCEGDCYHSGGTIISNLPFQNIDSRAVGKCPRYVKQRSLLLATGMKNVPE IPKGRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLN RLIAKTNQQFELIDNEFNEVEKQIGNVINWTRDSITEVWSYNAELLVAMENQHTIDLA DSEMDKLYERVKRQLRENAEEDGTGCFEIFHKCDDDCMASIRNNTYDHRKYREEAMQN RIQIDPVKLSSGYKDVILWFSFGASCFILLAIVMGLVFICVKNGNMRCTICI" ORIGIN 1 atgaacactc aaatcctggt attcgctctg attgcgatca ttccaacaaa tgcagacaaa 61 atctgcctcg gacatcatgc cgtgtcaaac ggaaccaaag taaacacatt aactgaaaga 121 ggagtggaag tcgtcaatgc aactgaaaca gtggaacgaa caaacatccc caggatctgc 181 tcaaaaggga aaaggacagt tgacctcggt caatgtggac tcctggggac aatcactgga 241 ccacctcaat gtgaccaatt cctagaattt tcggccgatt taattattga gaggcgagaa 301 ggaagtgatg tctgttatcc tgggaaattc gtgaatgaag aagctctgag gcaaattctc 361 agagaatcag gcggaattga caaggaagca atgggattca catacaatgg aataagaact 421 aatggagtaa ccagtgcatg taggagatca ggatcttcat tctatgcaga aatgaaatgg 481 ctccagtcaa acacagataa tgctgcattc ccgcagatga ctaagtcata taaaaataca 541 agaaaaagcc cagctataat agtatggggg atccatcatt ccgtttcaac tgcagagcaa 601 accaagctat atgggagtgg aaacaaactg gtgacagttg ggagttctaa ttatcaacaa 661 tctttcgtac cgagtccagg agcgagacca caagttaatg gtctatctgg aagaattgac 721 tttcattggc taatgctaaa tcccaatgat acagtcactt tcagtttcaa tggggctttc 781 atagctccag accgtgcaag cttcctgaga ggaaaatcta tgggaatcca gagtggagta 841 caggttgatg ccaattgtga aggggactgc tatcatagtg gagggacaat aataagtaac 901 ttgccatttc agaacataga tagcagggca gttggaaaat gtccgagata tgttaagcaa 961 aggagtctgc tgctggcaac agggatgaag aatgttcctg agattccaaa gggaagaggc 1021 ctatttggtg ctatagcggg tttcattgaa aatggatggg aaggcctaat tgatggttgg 1081 tatggtttca gacaccagaa tgcacaggga gagggaactg ctgcagatta caaaagcact 1141 caatcggcaa ttgatcaaat aacagggaaa ttaaaccggc ttatagcaaa aaccaaccaa 1201 caatttgagt tgatagacaa tgaattcaat gaggtagaga agcaaatcgg taatgtgata 1261 aattggacca gagattctat aacagaagtg tggtcataca atgctgaact cttggtagca 1321 atggagaacc agcatacaat tgatctggct gattcagaaa tggacaaact gtacgaacga 1381 gtgaaaagac agctgagaga gaatgctgaa gaagatggca ctggttgctt tgaaatattt 1441 cacaagtgtg atgatgactg tatggccagt attagaaata acacctatga tcacagaaaa 1501 tacagggaag aggcaatgca aaatagaata cagattgacc cagtcaaact aagcagcggc 1561 tacaaagatg tgatactttg gtttagcttc ggggcatcat gtttcatact tctagccatt 1621 gtaatgggcc ttgtcttcat atgtgtaaag aatggaaaca tgcggtgcac tatttgtata 1681 taa
  23. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621131A/Quzhou/2/2015 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI621124A/Quzhou/1/2015 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI621119A/chicken/Quzhou/2/2015 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI566070A/Jiangsu/06306/2014 (A/H7N9) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620203A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620196A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620189A/Anhui/1-JCVI1_RG2/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620182A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620171A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620164A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620157A/Anhui/1-BALF_RG7/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620146A/Anhui/1-BALF_RG20/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620139A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620132A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620125A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620122A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620115A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620108A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620101A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620096A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620089A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620082A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620075A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620068A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620057A/Anhui/1-BALF_RG1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620050A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620043A/Anhui/1-BALF_RG5/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620036A/Anhui/1-BALF_RG4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620029A/Anhui/1-BALF_RG3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI620022A/Anhui/1-BALF_RG2/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI619988A/Anhui/1-BALF_RG33/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI615185A/chicken/Wuxi/04030201G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI615182A/duck/Wuxi/0405006G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613839A/Anhui/DEWH72-05/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613832A/Anhui/DEWH72-04/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613818A/Anhui/DEWH72-02/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613811A/Anhui/DEWH72-01/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613780A/Anhui/DEWH72-07/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI613773A/Anhui/DEWH72-06/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI576584A/chicken/Guangdong/G1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI576582A/chicken/Guangdong/3135/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI568651A/Shanghai/02/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI545806A/pigeon/Wuxi/0405007G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI545799A/duck/Sunan/040802G/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI535173A/Hangzhou/49/2014 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI531122A/Anhui/1-DEWH730/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI530821A/Taiwan/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI515800A/Chicken/Suzhou/097-1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI504723A/Shanghai/5190T/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI504718A/Shanghai/5190T/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI498091A/environment/Suzhou/14/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497922A/Nanjing/7/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497898A/Suzhou/3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497877A/Wuxi/4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI497840A/environment/Zhenjiang/4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI492275A/environment/Zhejiang/14/2013 (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI492268A/environment/Zhejiang/13/2013 (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI492261A/environment/Zhejiang/09/2013 (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI487904A/chicken/Zhejiang/PA-DTID-ZJU01/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI477315A/Changsha/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI473797A/environment/Hangzhou/34-2/2013(H9N2) (A/H9N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI471843A/chicken/Shanghai/019/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI469515A/chicken/Rizhao/515/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI468348A/environment/Hangzhou/109-2/2013(H5N1) (A/H5N1) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464588A/Huzhou/5/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464587A/Huzhou/4/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464585A/Huzhou/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464584A/Environment/Huzhou/C58/2013 (A/H9N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464582A/Chicken/Huzhou/C73/2013 (A/H9N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464581A/Chicken/Huzhou/C72/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI464580A/Chicken/Huzhou/C54/2013 (A/H7) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI461481A/Nanchang/1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI460779A/Nanjing/5/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI460771A/Nanjing/3/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457879A/chicken/Guangdong/SD641/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457871A/chicken/Jiangsu/S002/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457855A/chicken/Jiangsu/SC099/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457847A/chicken/Jiangsu/SC537/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457831A/chicken/Shanghai/S1055/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457823A/chicken/Shanghai/S1076/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457815A/chicken/Shanghai/S1077/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457807A/chicken/Shanghai/S1078/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457799A/chicken/Shanghai/S1079/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457783A/chicken/Shanghai/S1358/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457775A/chicken/Shanghai/S1410/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457767A/chicken/Shanghai/S1413/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457751A/chicken/Zhejiang/SD019/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457743A/chicken/Zhejiang/SD033/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457727A/duck/Zhejiang/SC410/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457719A/environment/Fujian/SC337/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457711A/environment/Henan/SC232/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457703A/environment/Henan/SD429/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457695A/environment/Shandong/SD038/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457639A/homing pigeon/Jiangsu/SD184/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457631A/pigeon/Shanghai/S1421/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI457623A/pigeon/Shanghai/S1423/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI451276A/Shanghai/Patient6/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI451258A/Shanghai/Patient2/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI451018A/Shanghai/patient1/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI448940A/Shanghai/02/2013 (A/H7N9) segment 8 (NS)1520.90.000000e+00833/838 (99%)
  24. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621130A/Quzhou/2/2015 (A/H7N9) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI621123A/Quzhou/1/2015 (A/H7N9) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI621118A/chicken/Quzhou/2/2015 (A/H7N9) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI592509A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 5 (NP)2715.70.000000e+001488/1497 (99%)EPI593560A/chicken/Jiangxi/18517/2014 (A/H0) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593389A/chicken/Jiangxi/18012/2014 (A/H0) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593382A/chicken/Jiangxi/18008/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593175A/chicken/Jiangxi/14530/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593168A/chicken/Jiangxi/14518/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593147A/chicken/Jiangxi/14513/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592653A/chicken/Jiangxi/14482/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592608A/chicken/Jiangxi/13554/2014 (A/H0) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592593A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592578A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592569A/chicken/Jiangxi/13540/2014 (A/H0) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592525A/chicken/Jiangxi/13525/2014 (A/H0) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592516A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592485A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592461A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592282A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI592275A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 5 (NP)2710.20.000000e+001487/1497 (99%)EPI593549A/chicken/Jiangxi/18515/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593498A/chicken/Jiangxi/18487/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593477A/chicken/Jiangxi/18483/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593470A/chicken/Jiangxi/18482/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592533A/chicken/Jiangxi/13526/2014 (A/H0) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI592245A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 5 (NP)2704.60.000000e+001486/1497 (99%)EPI593609A/chicken/Jiangxi/18527/2014 (A/H0) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593582A/chicken/Jiangxi/18524/2014 (A/H0) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593542A/chicken/Jiangxi/18513/2014 (A/H7N9) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593462A/chicken/Jiangxi/18476/2014 (A/H0) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593450A/chicken/Jiangxi/18470/2014 (A/H0) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI593406A/chicken/Jiangxi/18449/2014 (A/H7N9) segment 5 (NP)2699.10.000000e+001485/1497 (99%)EPI531803A/Taiwan/2/2014 (A/H7N9) segment 5 (NP)2693.50.000000e+001484/1497 (99%)EPI593509A/chicken/Jiangxi/18491/2014 (A/H0) segment 5 (NP)2689.80.000000e+001480/1492 (99%)EPI593427A/chicken/Jiangxi/18466/2014 (A/H0) segment 5 (NP)2689.80.000000e+001482/1495 (99%)EPI576576A/chicken/Guangdong/3135/2013 (A/H7N9) segment 5 (NP)2688.00.000000e+001483/1497 (99%)EPI447717A/Shandong/01/2013 (A/H7N9) segment 5 (NP)2688.00.000000e+001483/1497 (99%)EPI593622A/chicken/Jiangxi/19426/2014 (A/H0) segment 5 (NP)2684.30.000000e+001481/1495 (99%)EPI620202A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620195A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620188A/Anhui/1-JCVI1_RG2/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620181A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620177A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620170A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620163A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620156A/Anhui/1-BALF_RG7/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620145A/Anhui/1-BALF_RG20/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620138A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620131A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620121A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620114A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620107A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620100A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620095A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620088A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620081A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620074A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620067A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620063A/Anhui/1-BALF_RG2/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620056A/Anhui/1-BALF_RG1/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620049A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620042A/Anhui/1-BALF_RG5/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620035A/Anhui/1-BALF_RG4/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI620028A/Anhui/1-BALF_RG3/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI619987A/Anhui/1-BALF_RG33/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613838A/Anhui/DEWH72-05/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613831A/Anhui/DEWH72-04/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613824A/Anhui/DEWH72-03/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613817A/Anhui/DEWH72-02/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613810A/Anhui/DEWH72-01/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613793A/Anhui/DEWH72-09/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613786A/Anhui/DEWH72-08/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI613779A/Anhui/DEWH72-07/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI583022A/chicken/Huzhou/4169/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI583008A/chicken/Huzhou/4083/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582992A/chicken/Huzhou/4079/2013 (A/H0) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582984A/chicken/Huzhou/4076/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582967A/chicken/Huzhou/4074/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582953A/chicken/Huzhou/4069/2013 (A/H0) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582945A/chicken/Huzhou/4067/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582930A/chicken/Huzhou/4034/2013 (A/H0) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582921A/chicken/Huzhou/3977/2013 (A/H0) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582906A/chicken/Huzhou/3802/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI582348A/chicken/Huzhou/3765/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI576577A/chicken/Guangdong/3640/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI568649A/Shanghai/02/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI566109A/Xinjiang/98692/2014 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI566093A/XinjiangBintuan/99117/2014 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI566061A/Xinjiang/05845/2015 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI566053A/Environment/Xinjiang/98679/2014 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI566045A/Xinjiang/05916/2014 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI532343A/chicken/Zhejiang/C497/2013 (A/H9N2) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI532341A/chicken/Zhejiang/C487/2013 (A/H9N2) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI531121A/Anhui/1-DEWH730/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI530825A/Taiwan/1/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI508927A/tree sparrow/Shanghai/01/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI498088A/environment/Suzhou/14/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI497919A/Nanjing/7/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)EPI497866A/Wuxi/3/2013 (A/H7N9) segment 5 (NP)2682.50.000000e+001482/1497 (98%)
  25. niman
    AlignSegment-IDNameScoreE-ValueIdentityEPI621113A/Quzhou/1/2015 (A/H7N9) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI621114A/Quzhou/2/2015 (A/H7N9) segment 3 (PA)3967.70.000000e+002150/2151 (99%)EPI566127A/Fujian/09273/2015 (A/H7N9) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI566080A/Guizhou/03240/2015 (A/H7N9) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI541773A/Taiwan/3/2013 (A/H7N9) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI596649A/Shanghai/02/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576875A/chicken/Jiangxi/12544/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576873A/chicken/Jiangxi/12492/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576828A/silkie chicken/Huzhou/4208/2013 (A/H0) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576824A/chicken/Huzhou/4083/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576822A/chicken/Huzhou/4079/2013 (A/H0) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576821A/chicken/Huzhou/4076/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576820A/chicken/Huzhou/4074/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576786A/chicken/Huzhou/3791/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576785A/chicken/Huzhou/3765/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI576562A/chicken/Guangdong/G3/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI545207A/duck/Sunan/040802G/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI542255A/Shanghai/MH01/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI532269A/chicken/Zhejiang/C483/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI532268A/chicken/Zhejiang/C481/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI497934A/Nanjing/6/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI497890A/Wuxi/4/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI497844A/environment/Suzhou/8/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI490975A/Environment/Guangdong/C13281030/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI468345A/environment/Hangzhou/109-2/2013(H5N1) (A/H5N1) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457873A/chicken/Jiangsu/S002/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457721A/environment/Fujian/SC337/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457713A/environment/Henan/SC232/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457689A/environment/Shandong/SD039/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457681A/environment/Shandong/SD049/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457633A/pigeon/Shanghai/S1421/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI457617A/wild pigeon/Jiangsu/SD001/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI448945A/Shanghai/02/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI447959A/Shanghai/3/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI447949A/Shanghai/4/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI447888A/chicken/Anhui-Chuzhou/01/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI447712A/Fujian/01/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI447670A/Jiangsu/07/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI447635A/Anhui/03/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI443674A/environment/Hangzhou/109-1/2013(H7N9) (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI443571A/environment/Hangzhou/34-1/2013(H7N9) (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI440681A/Chicken/Shanghai/S1053/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI439498A/Shanghai/2/2013 (A/H7N9) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI591127A/duck/Jiangxi/5467/2014 (A/H7N3) segment 3 (PA)3908.60.000000e+002139/2151 (99%)EPI473792A/environment/Hangzhou/34-2/2013(H9N2) (A/H9N2) segment 3 (PA)3908.60.000000e+002138/2149 (99%)EPI447656A/Jiangsu/09/2013 (A/H7N9) segment 3 (PA)3908.60.000000e+002139/2151 (99%)EPI620021A/Anhui/1-DEWH730/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620020A/Anhui/1-BALF_RG5/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620019A/Anhui/1-BALF_RG4/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620018A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620017A/Anhui/1-BALF_RG1/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620016A/Anhui/1-BALF_RG3/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620015A/Anhui/1-BALF_RG2/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620014A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620013A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620012A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620011A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620010A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620009A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620008A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620007A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620006A/Anhui/1-BALF_RG20/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620005A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620004A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620003A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620002A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620001A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI620000A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI619999A/Anhui/1-BALF_RG7/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI619998A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI619997A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI619996A/Anhui/1-JCVI1_RG2/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI619995A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI619992A/Anhui/1-BALF_RG33/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612869A/Anhui/DEWH72-09/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612868A/Anhui/DEWH72-08/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612865A/Anhui/DEWH72-05/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612864A/Anhui/DEWH72-04/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612863A/Anhui/DEWH72-03/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612862A/Anhui/DEWH72-02/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI612861A/Anhui/DEWH72-01/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI591179A/chicken/Huzhou/3892/2013 (A/H9N2) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576876A/chicken/Jiangxi/12554/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576840A/chicken/Shaoxing/5186/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576826A/chicken/Huzhou/4169/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576825A/chicken/Huzhou/4141/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576819A/chicken/Huzhou/4073/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576817A/chicken/Huzhou/4067/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI576787A/chicken/Huzhou/3802/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI566072A/Jiangsu/06306/2014 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI531492A/Shanghai/01/2014 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI515795A/Chicken/Suzhou/097-1/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI508923A/tree sparrow/Shanghai/01/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI498105A/Xuzhou/1/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI497940A/Nanjing/7/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI497937A/Suzhou/5/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI497930A/Suzhou/3/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI497880A/Nanjing/4/2013 (A/H7N9) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI492306A/environment/Zhejiang/16/2013 (A/H9N2) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI492297A/environment/Zhejiang/13/2013 (A/H9N2) segment 3 (PA)3906.80.000000e+002139/2151 (99%)
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