niman

France/ARA-HCL023171676001/2023 Caluire et Cuire 10/31/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C9142T (NSP4)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=44.250602627342815%2C0.634046122943901&z=10

France/NAQ-HCL023170879501/2023 Lot-et-Garonne 10/23/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 C9142T (NSP4)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=44.22916887331174%2C0.40333323231890095&z=9

France/NAQ-HCL023170876701/2023 Lot-et-Garonne 10/23/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.76328203398924%2C4.714855105175775&z=11

France/ARA-HCL023170335201/2023 Auvergne-Rhone-Alpes 10/30/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 C9142T (NSP4)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.70754417279866%2C5.026972648258448&z=10

France/ARA-HCL023169885501/2023 Auvergne-Rhone-Alpes 10/28/23 collection Spike ins16MPLF, V483del NSP3 K1155R NSP2 F319L T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 C9142T (NSP4)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=45.86445583797758%2C4.872766426474069&z=10

France/ARA-HCL023167857401/2023 Auvergne-Rhone-Alpes 10/25/23 collection Spike ins16MPLF, V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C18894T (NSP14) Spike L455S NS7b F19L JN.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.568343210927395%2C6.7244614461960195&z=13

Switzerland/VD-CHUV-GEN18098/2023 Vaud Lausanne University Hospital (CHUV) 11/2/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.588426395315466%2C6.670407949584565&z=12

Switzerland/VD-CHUV-GEN18111/2023 Vaud Lausanne University Hospital (CHUV) 10/31/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

Switzerland/VD-CHUV-GEN18080/2023 Vaud Lausanne University Hospital (CHUV) 10/25/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.58228384808643%2C6.438665090697846&z=13

Switzerland/VD-CHUV-GEN18112/2023 Vaud Lausanne University Hospital (CHUV) 10/30/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.545164941907075%2C6.4311119901119085&z=13

Switzerland/VD-CHUV-GEN18096/2023 Vaud Lausanne University Hospital (CHUV) 11/1/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.552349581695225%2C6.539580732020864&z=12

Switzerland/VD-CHUV-GEN18073/2023 Vaud Lausanne University Hospital (CHUV) 10/25/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.50373053032584%2C6.63819106337844&z=12

Switzerland/VD-CHUV-GEN18015/2023 Vaud Lausanne University Hospital (CHUV) 10/16/23 collection Spike V483del NSP3 K1155R T3565C (NSP3) NSP6 R252K C11747T (NSP6) C18894T (NSP14) Spike L455S NS7b F19L JN.1 NSP2 F319L C22792T (Spike)

collection date 2023-10-16 geographic location Switzerland host common name Human host health state restricted access host Homo sapiens host sex restricted access host subject id restricted access isolate hCoV-19/Switzerland/VD-CHUV-GEN18015/2023 sample capture status active surveillance not initiated by an outbreak sample name SPSP10215719 ENA-CHECKLIST ERC000033 INSDC center name Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland Submitter Id SPSP10215719 broker name SIB collecting institution CHUV, CH-1011 Lausanne, Switzerland collector name Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli geographic location (region and locality) VD scientific_name Severe acute respiratory syndrome coronavirus 2 BioProject PRJEB43828 Retrieve all samples from this project Submission EBI; 2023-10-28 Accession: SAMEA114554935 ID: 38026354 Nucleotide https://www.ncbi.nlm.nih.gov/biosample/SAMEA114554935