niman Posted February 20, 2017 Report Share Posted February 20, 2017 (edited) WHO Beijing Center has released 6 additional sets of H7 and N9 HPAI sequences collected between Nov 7 and Dec 12. All have polybasic cleavage site KRKRTAR in H7 and wild type (R292) for Tamiflu resistance. Edited February 20, 2017 by niman Link to comment Share on other sites More sharing options...
niman Posted February 20, 2017 Author Report Share Posted February 20, 2017 (edited) A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) EPI_ISL_249316 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-11-07 A/Environment/Guangdong/C16283219/2016(H7,H9,N2,N9) EPI_ISL_249315 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-11-02 A/Environment/Guangdong/C16283277/2016(H7,H9,N2,N9) EPI_ISL_249314 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-07 A/Environment/Guangdong/KGZ4048/2016(H7,H9,N2,N9) EPI_ISL_249313 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-12 A/Environment/Guangdong/KGZ4068/2016(H7,H9,N2,N9) EPI_ISL_249312 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-12 A/Environment/Guangdong/KGZ4075/2016(H7,H9,N2,N9) EPI_ISL_249311 E1 --- --- --- 1695 --- 1398 --- --- --- --- 2016-12-12 Edited February 20, 2017 by niman Link to comment Share on other sites More sharing options...
niman Posted February 20, 2017 Author Report Share Posted February 20, 2017 Isolate name: A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) Isolate ID: EPI_ISL_249316 Passage details/history: E1 Type: A Lineage: Sample information Collection date: 2016-11-07 Host Environment Additional host information: Location: China Additional location information: Guangdong Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: WHO Chinese National Influenza Center Sample ID given by the submitting laboratory: Authors: Address: WHO Chinese National Influenza Center Virology Institute, Chinese CDC 155 Changbai Road, Changping District, Beijing 102206 China Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/Environment/Guangdong/C162811110/2016-HA 1695 EPI919627 NA A/Environment/Guangdong/C162811110/2016-NA 1398 EPI919626 Submitter information Submitter: Yang, Lei Submission Date: 2017-02-20 Last modifier: Yang, Lei Last modified: 2017-02-20 Address: WHO Chinese National Influenza Center Virology Institute, Chinese CDC 155 Changbai Road, Changping District, Beijing 102206 China Link to comment Share on other sites More sharing options...
niman Posted February 20, 2017 Author Report Share Posted February 20, 2017 Align Segment-ID Name Score E-Value Identity EPI919627 A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3131.2 0.000000e+00 1695/1695 (100%) EPI919615 A/Environment/Guangdong/C16283222/2016 (A/H7N9) segment 4 (HA) 3114.6 0.000000e+00 1692/1695 (99%) EPI919623 A/Environment/Guangdong/C16283277/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3109.0 0.000000e+00 1691/1695 (99%) EPI919625 A/Environment/Guangdong/C16283219/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3103.5 0.000000e+00 1690/1695 (99%) EPI919599 A/Guangdong/17SF006/2017 (A/H7N9) segment 4 (HA) 3086.9 0.000000e+00 1687/1695 (99%) EPI918736 A/Qingyuan/GIRD1/2017 (A/H7N9) segment 4 (HA) 3086.9 0.000000e+00 1687/1695 (99%) EPI919621 A/Environment/Guangdong/KGZ4048/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI919619 A/Environment/Guangdong/KGZ4068/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI919617 A/Environment/Guangdong/KGZ4075/2016(H7,H9,N2,N9) (A/H0) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI919607 A/Guangdong/17SF003/2016 (A/H7N9) segment 4 (HA) 3064.7 0.000000e+00 1683/1695 (99%) EPI917065 A/Taiwan/1/2017 (A/H7N9) segment 4 (HA) 3048.1 0.000000e+00 1680/1695 (99%) EPI507710 A/turkey/Italy/4828/1999 (A/H7N1) segment 4 (HA) 2344.5 0.000000e+00 1562/1704 (91%) EPI68427 A/turkey/Italy/4708/1999 (A/H7N1) segment 4 (HA) 2344.5 0.000000e+00 1562/1704 (91%) EPI63296 A/quail/Italy/396/2000 (A/H7N1) segment 4 (HA) 2340.8 0.000000e+00 1562/1705 (91%) EPI507734 A/turkey/Italy/4756/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI507718 A/turkey/Italy/4827/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI507702 A/turkey/Italy/4618/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI505580 A/chicken/Italy/4845/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107393 A/ostrich/Italy/984/00 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107376 A/ostrich/Italy/984/00 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107357 A/chicken/Italy/5093/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI107338 A/chicken/Italy/5093/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI69101 A/turkey/Italy/4617/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI69063 A/chicken/Italy/4789/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI68218 A/turkey/Italy/1084/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI68199 A/chicken/Italy/2335/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI63258 A/chicken/Italy/4746/1999 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI60747 A/duck/Italy/551/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI60386 A/turkey/Italy/4580/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1561/1704 (91%) EPI58714 A/ostrich/Italy/1038/2000 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12992 A/Turkey/Italy/335/00 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12990 A/Turkey/Italy/13468/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12984 A/Turkey/Italy/13467/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12982 A/Chicken/Italy/13307/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12980 A/chicken/Italy/13474/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI12884 A/turkey/Italy/12598/99 (A/H7N1) segment 4 (HA) 2339.0 0.000000e+00 1562/1705 (91%) EPI505858 A/guinea fowl/Italy/1766/2000 (A/H7N1) segment 4 (HA) 2335.3 0.000000e+00 1561/1705 (91%) EPI651420 A/chicken/Italy/445 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI505601 A/turkey/Italy/5005/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI505582 A/chicken/Italy/4911/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI505581 A/turkey/Italy/4906/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI353345 A/chicken/Italy/445/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI242904 A/chicken/Italy/445/99 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI242903 A/Italy/445/99 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI69044 A/quail/Italy/4992/1999 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1561/1705 (91%) EPI13148 A/chicken/Italy/445/99 (A/H7N1) segment 4 (HA) 2333.4 0.000000e+00 1560/1704 (91%) EPI505640 A/turkey/Italy/140/2000 (A/H7N1) segment 4 (HA) 2331.6 0.000000e+00 1560/1705 (91%) EPI505851 A/chicken/Italy/1730/2000 (A/H7N1) segment 4 (HA) 2329.7 0.000000e+00 1560/1705 (91%) EPI505603 A/chicken/Italy/5074/1999 (A/H7N1) segment 4 (HA) 2329.7 0.000000e+00 1557/1700 (91%) EPI507726 A/turkey/Italy/4749/1999 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1560/1705 (91%) EPI505811 A/chicken/Italy/1651/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1559/1704 (91%) EPI505781 A/chicken/Italy/933/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1558/1703 (91%) EPI505703 A/chicken/Italy/797/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1560/1705 (91%) EPI238415 A/Turkey/Italy/13489/99 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1560/1705 (91%) EPI63277 A/guinea fowl/Italy/155/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1561/1706 (91%) EPI43057 A/chicken/Italy/1285/2000 (A/H7N1) segment 4 (HA) 2327.9 0.000000e+00 1559/1704 (91%) EPI505875 A/quail/Italy/1764/2000 (A/H7N1) segment 4 (HA) 2324.2 0.000000e+00 1559/1705 (91%) EPI505809 A/goose/Italy/1310/2000 (A/H7N1) segment 4 (HA) 2324.2 0.000000e+00 1559/1705 (91%) EPI60690 A/turkey/Italy/2984/2000 (A/H7N1) segment 4 (HA) 2324.2 0.000000e+00 1561/1707 (91%) EPI505779 A/guineafowl/Italy/918/2000 (A/H7N1) segment 4 (HA) 2322.4 0.000000e+00 1560/1706 (91%) EPI68522 A/pekin duck/Italy/1848/2000 (A/H7N1) segment 4 (HA) 2322.4 0.000000e+00 1559/1705 (91%) EPI12988 A/Chicken/Italy/267/00 (A/H7N1) segment 4 (HA) 2322.4 0.000000e+00 1559/1705 (91%) EPI505861 A/guinea fowl/Italy/1847/2000 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1558/1705 (91%) EPI505702 A/turkey/Italy/720/2000 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1555/1700 (91%) EPI107319 A/ostrich/Italy/2332/00 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1558/1705 (91%) EPI107300 A/ostrich/Italy/2332/00 (A/H7N1) segment 4 (HA) 2318.7 0.000000e+00 1558/1705 (91%) EPI319892 A/Netherlands/086/03 (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1554/1699 (91%) EPI294949 A/chicken/Netherlands/03008344/03(H7N7) (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI290279 A/chicken/Netherlands/03005432/03(H7N7) (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI237858 A/chicken/Netherlands/03009938/03 (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI237816 A/chicken/Netherlands/03010351/03 (A/H7N7) segment 4 (HA) 2316.8 0.000000e+00 1556/1702 (91%) EPI505605 A/chicken/Italy/5086/1999 (A/H7N1) segment 4 (HA) 2315.0 0.000000e+00 1556/1702 (91%) EPI505604 A/chicken/Italy/5079/1999 (A/H7N1) segment 4 (HA) 2315.0 0.000000e+00 1553/1698 (91%) EPI294973 A/chicken/Netherlands/03008200/03(H7N7) (A/H7N7) segment 4 (HA) 2315.0 0.000000e+00 1555/1701 (91%) EPI294958 A/chicken/Netherlands/03008374/03(H7N7) (A/H7N7) segment 4 (HA) 2315.0 0.000000e+00 1555/1701 (91%) EPI237855 A/chicken/Netherlands/03009127/03 (A/H7N7) segment 4 (HA) 2315.0 0.000000e+00 1555/1701 (91%) EPI505693 A/chicken/Italy/501/2000 (A/H7N1) segment 4 (HA) 2313.1 0.000000e+00 1551/1696 (91%) EPI304486 A/chicken/belgium/06601/2003 (A/H7N7) segment 4 (HA) 2313.1 0.000000e+00 1554/1700 (91%) EPI319946 A/Netherlands/295/03 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1553/1699 (91%) EPI304477 A/chicken/belgium/06383/2003 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI304468 A/chicken/belgium/06175/2003 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295048 A/chicken/Netherlands/03013833/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295045 A/chicken/Netherlands/03012010/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295042 A/chicken/Netherlands/03012012/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI295024 A/chicken/Netherlands/03008331/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI294976 A/chicken/Netherlands/03009080/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI294952 A/chicken/Netherlands/03008381/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI294910 A/chicken/Netherlands/03002974/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290444 A/chicken/Netherlands/03012785/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290438 A/chicken/Netherlands/03012011/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290435 A/chicken/Netherlands/03011061/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290432 A/turkey/Netherlands/03010737/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290426 A/turkey/Netherlands/03010495/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290381 A/chicken/Netherlands/03009831/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290285 A/chicken/Netherlands/03003441/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290273 A/chicken/Netherlands/03008059/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290228 A/chicken/Netherlands/03003325/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290225 A/chicken/Netherlands/03003403/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI290189 A/chicken/Netherlands/03002994/03(H7N7) (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) EPI237887 A/turkey/Netherlands/03010821/03 (A/H7N7) segment 4 (HA) 2311.3 0.000000e+00 1555/1702 (91%) Link to comment Share on other sites More sharing options...
niman Posted February 20, 2017 Author Report Share Posted February 20, 2017 Align Segment-ID Name Score E-Value Identity EPI919626 A/Environment/Guangdong/C162811110/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2582.7 0.000000e+00 1398/1398 (100%) EPI919614 A/Environment/Guangdong/C16283222/2016 (A/H7N9) segment 6 (NA) 2566.1 0.000000e+00 1395/1398 (99%) EPI919624 A/Environment/Guangdong/C16283219/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2560.6 0.000000e+00 1394/1398 (99%) EPI919622 A/Environment/Guangdong/C16283277/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2560.6 0.000000e+00 1394/1398 (99%) EPI919598 A/Guangdong/17SF006/2017 (A/H7N9) segment 6 (NA) 2549.5 0.000000e+00 1392/1398 (99%) EPI918738 A/Qingyuan/GIRD1/2017 (A/H7N9) segment 6 (NA) 2544.0 0.000000e+00 1391/1398 (99%) EPI919620 A/Environment/Guangdong/KGZ4048/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2521.8 0.000000e+00 1387/1398 (99%) EPI919616 A/Environment/Guangdong/KGZ4075/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2521.8 0.000000e+00 1387/1398 (99%) EPI919606 A/Guangdong/17SF003/2016 (A/H7N9) segment 6 (NA) 2521.8 0.000000e+00 1387/1398 (99%) EPI919618 A/Environment/Guangdong/KGZ4068/2016(H7,H9,N2,N9) (A/H0) segment 6 (NA) 2518.1 0.000000e+00 1386/1398 (99%) EPI627232 A/Fujian/23/2015 (A/H7N9) segment 6 (NA) 2510.7 0.000000e+00 1386/1399 (99%) EPI627384 A/Guangdong/02497/2014 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI627216 A/Fujian/25/2015 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI627024 A/Guangdong/15SF027/2015 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI627000 A/Guangdong/15SF080/2015 (A/H7N9) segment 6 (NA) 2505.2 0.000000e+00 1385/1399 (98%) EPI769577 A/Fujian/16/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI628807 A/Fujian/27/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI628695 A/Guangdong/15SF055/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627312 A/Fujian/8/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627296 A/Fujian/19/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627264 A/Guangdong/15SF021/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627104 A/Fujian/17/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI627048 A/Guangdong/15SF081/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI580389 A/Chicken/Guangdong/SW154/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI580381 A/Chicken/Guangdong/SW153/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI566130 A/Fujian/09273/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1384/1399 (98%) EPI769569 A/Fujian/10/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628687 A/Guangdong/15SF054/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628655 A/Environment/Hunan/20986/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628631 A/Environment/Guangdong/21275/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI628583 A/Environment/Anhui/33248/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627256 A/Fujian/7/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627224 A/Fujian/24/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627120 A/Guangdong/15SF030/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627112 A/Guangdong/15SF043/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627096 A/Jiangsu/19758/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627040 A/Fujian/6/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI627008 A/Jiangsu/19757/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI566083 A/Guizhou/03240/2015 (A/H7N9) segment 6 (NA) 2494.1 0.000000e+00 1383/1399 (98%) EPI683029 A/chicken/Wenzhou/HATSLG01/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628743 A/Anhui/33224/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628663 A/Anhui/33227/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628639 A/Environment/Guangdong/21286/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628623 A/Environment/Guangdong/21231/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628591 A/Environment/Anhui/33240/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI628575 A/Environment/Anhui/33250/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627472 A/Fujian/1/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627456 A/Fujian/3/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627304 A/Fujian/11/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627168 A/Zhejiang/4/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627088 A/Hunan/19763/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI627080 A/Hunan/19762/2015 (A/H7N9) segment 6 (NA) 2488.6 0.000000e+00 1382/1399 (98%) EPI692616 A/Huai'an/002/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI628823 A/Zhejiang/10/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI628775 A/Zhejiang/7/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI627464 A/Fujian/2/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI627288 A/Fujian/20/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI627192 A/Guangdong/15SF020/2015 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1381/1399 (98%) EPI729461 A/Taiwan/4-CGMH2/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI692626 A/chicken/Huai'an/003/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI683028 A/chicken/Wenzhou/RAQL18/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI683027 A/chicken/Wenzhou/RAQL01/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI628751 A/Anhui/33225/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI628727 A/Anhui/33228/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI628607 A/Environment/Anhui/39280/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI593638 A/chicken/Jiangxi/19463/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI593625 A/chicken/Jiangxi/19426/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI593383 A/chicken/Jiangxi/18008/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592610 A/chicken/Jiangxi/13554/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592594 A/chicken/Jiangxi/13548/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592579 A/chicken/Jiangxi/13543/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592570 A/chicken/Jiangxi/13540/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592534 A/chicken/Jiangxi/13526/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592526 A/chicken/Jiangxi/13525/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592517 A/chicken/Jiangxi/13524/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592510 A/chicken/Jiangxi/13521/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592486 A/chicken/Jiangxi/13512/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592462 A/chicken/Jiangxi/13493/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592283 A/chicken/Jiangxi/13546/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI592246 A/chicken/Jiangxi/13513/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI521919 A/Taiwan/2/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1380/1399 (98%) EPI627480 A/Fujian/17/2014 (A/H7N9) segment 6 (NA) 2473.8 0.000000e+00 1379/1399 (98%) EPI729453 A/Taiwan/4-CGMH1/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI707902 A/chicken/Shanghai/S3630/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI628567 A/Anhui/40095/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627919 A/Xinjiang/73030/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627911 A/Environment/Xinjiang/73033/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627440 A/Anhui/01887/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627240 A/Fujian/21/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI627160 A/Zhejiang/3/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593583 A/chicken/Jiangxi/18524/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593543 A/chicken/Jiangxi/18513/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593453 A/chicken/Jiangxi/18470/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593400 A/chicken/Jiangxi/18035/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI593132 A/chicken/Jiangxi/14502/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI592276 A/chicken/Jiangxi/13538/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1379/1399 (98%) EPI707983 A/chicken/Shanghai/S3086/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) EPI707982 A/chicken/Shanghai/S3085/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) EPI707981 A/chicken/Shanghai/S3084/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) EPI707904 A/duck/Jiangsu/J3619/2014 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1378/1399 (98%) Link to comment Share on other sites More sharing options...
niman Posted February 23, 2017 Author Report Share Posted February 23, 2017 Podcast on LBM samples and H5N1 gain of function studies applied to LPAI H7N9 http://recombinomics.co/thedrnimanshow/2017/02/022317.mp3 Link to comment Share on other sites More sharing options...
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