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Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/ALDP-C47DDD/2020 Original EPI_ISL_718803 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C473CC/2020 Original EPI_ISL_718800 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C479AC/2020 Original EPI_ISL_718708 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47502/2020 Original EPI_ISL_718704 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C472CF/2020 Original EPI_ISL_718701 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4771B/2020 Original EPI_ISL_718809 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C4812B/2020 Original EPI_ISL_718813 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C481A3/2020 Original EPI_ISL_718811 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C48273/2020 Original EPI_ISL_718812 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45337/2020 Original EPI_ISL_718394 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C469E9/2020 Original EPI_ISL_718395 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C452EF/2020 Original EPI_ISL_718392 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46A40/2020 Original EPI_ISL_718391 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44DC1/2020 Original EPI_ISL_718398 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46A04/2020 Original EPI_ISL_718399 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FD05/2020 Original EPI_ISL_718396 2020-12-10 2020-12-21 29,283 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45BD5/2020 Original EPI_ISL_718362 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FE11/2020 Original EPI_ISL_718483 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4424A/2020 Original EPI_ISL_718480 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C452D0/2020 Original EPI_ISL_718481 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44CF1/2020 Original EPI_ISL_718369 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB0B/2020 Original EPI_ISL_718488 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46C86/2020 Original EPI_ISL_718489 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46AF5/2020 Original EPI_ISL_718366 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4608A/2020 Original EPI_ISL_718487 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C402A8/2020 Original EPI_ISL_718363 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4040C/2020 Original EPI_ISL_718364 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FDAB/2020 Original EPI_ISL_718485 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C404FD/2020 Original EPI_ISL_718350 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C460A8/2020 Original EPI_ISL_718471 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C402B7/2020 Original EPI_ISL_718590 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F989/2020 Original EPI_ISL_718470 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4671C/2020 Original EPI_ISL_718591 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C469BC/2020 Original EPI_ISL_718479 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45BE4/2020 Original EPI_ISL_718359 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46B01/2020 Original EPI_ISL_718356 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44BA9/2020 Original EPI_ISL_718354 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C404B1/2020 Original EPI_ISL_718596 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F5A3/2020 Original EPI_ISL_718355 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F637/2020 Original EPI_ISL_718353 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44259/2020 Original EPI_ISL_718474 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40563/2020 Original EPI_ISL_718383 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C404DF/2020 Original EPI_ISL_718384 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F9A7/2020 Original EPI_ISL_718381 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46363/2020 Original EPI_ISL_718380 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C469AD/2020 Original EPI_ISL_718387 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45391/2020 Original EPI_ISL_718388 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40518/2020 Original EPI_ISL_718372 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C467A3/2020 Original EPI_ISL_718373 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45C4B/2020 Original EPI_ISL_718494 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C4704D/2020 Original EPI_ISL_718737 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C463EB/2020 Original EPI_ISL_718559 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46A5F/2020 Original EPI_ISL_718614 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45C1E/2020 Original EPI_ISL_718611 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49940/2020 Original EPI_ISL_718633 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47827/2020 Original EPI_ISL_718634 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FDBA/2020 Original EPI_ISL_718555 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4714A/2020 Original EPI_ISL_718731 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46345/2020 Original EPI_ISL_718610 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44D2B/2020 Original EPI_ISL_718599 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44C79/2020 Original EPI_ISL_718552 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46B2F/2020 Original EPI_ISL_718575 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C402F3/2020 Original EPI_ISL_718550 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46C68/2020 Original EPI_ISL_718572 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47E25/2020 Original EPI_ISL_718729 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44CB5/2020 Original EPI_ISL_718604 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F5C1/2020 Original EPI_ISL_718603 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47EAD/2020 Original EPI_ISL_718724 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40554/2020 Original EPI_ISL_718601 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C470C5/2020 Original EPI_ISL_718720 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49C47/2020 Original EPI_ISL_718710 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45BF3/2020 Original EPI_ISL_718507 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F9E3/2020 Original EPI_ISL_718628 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4770C/2020 Original EPI_ISL_718749 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4673A/2020 Original EPI_ISL_718508 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C403B4/2020 Original EPI_ISL_718505 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4035A/2020 Original EPI_ISL_718627 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47238/2020 Original EPI_ISL_718748 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45A32/2020 Original EPI_ISL_718503 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47F9B/2020 Original EPI_ISL_718746 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FA2C/2020 Original EPI_ISL_718501 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46BA7/2020 Original EPI_ISL_718743 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46A7D/2020 Original EPI_ISL_718623 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47960/2020 Original EPI_ISL_718741 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45328/2020 Original EPI_ISL_718620 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C479D9/2020 Original EPI_ISL_718500 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C482BF/2020 Original EPI_ISL_718742 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46CFF/2020 Original EPI_ISL_718617 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FE02/2020 Original EPI_ISL_718618 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C402E4/2020 Original EPI_ISL_718615 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46FF6/2020 Original EPI_ISL_718736 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45FF7/2020 Original EPI_ISL_718616 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F9C5/2020 Original EPI_ISL_718613 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46DED/2020 Original EPI_ISL_718734 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46B7A/2020 Original EPI_ISL_718732 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47836/2020 Original EPI_ISL_718733 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47317/2020 Original EPI_ISL_718730 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47FF5/2020 Original EPI_ISL_718806 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46B89/2020 Original EPI_ISL_718804 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C499C8/2020 Original EPI_ISL_718802 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C40BE9/2020 Original EPI_ISL_718992 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C440E6/2020 Original EPI_ISL_718990 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49B86/2020 Original EPI_ISL_718870 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E5B3/2020 Original EPI_ISL_718991 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47E9E/2020 Original EPI_ISL_718890 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4761E/2020 Original EPI_ISL_718899 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C477A2/2020 Original EPI_ISL_718898 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49A7A/2020 Original EPI_ISL_718895 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4721A/2020 Original EPI_ISL_718896 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46C0E/2020 Original EPI_ISL_718893 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47D73/2020 Original EPI_ISL_718894 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C473AE/2020 Original EPI_ISL_718892 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080325/2020 Original EPI_ISL_723044 2020-12-11 2020-12-21 29,837 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205041873/2020 Original EPI_ISL_723042 2020-12-09 2020-12-21 29,826 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205090046/2020 Original EPI_ISL_723007 2020-12-12 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205090043/2020 Original EPI_ISL_723006 2020-12-11 2020-12-21 29,835 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080626/2020 Original EPI_ISL_723005 2020-12-09 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080622/2020 Original EPI_ISL_723004 2020-12-09 2020-12-21 29,804 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080621/2020 Original EPI_ISL_723003 2020-12-09 2020-12-21 29,800 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080620/2020 Original EPI_ISL_723002 2020-12-09 2020-12-21 29,802 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080610/2020 Original EPI_ISL_723001 2020-12-09 2020-12-21 29,827 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080372/2020 Original EPI_ISL_723000 2020-12-10 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080329/2020 Original EPI_ISL_722999 2020-12-11 2020-12-21 29,831 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205020540/2020 Original EPI_ISL_722998 2020-12-07 2020-12-21 29,834 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205020474/2020 Original EPI_ISL_722997 2020-12-07 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205020463/2020 Original EPI_ISL_722996 2020-12-07 2020-12-21 29,810 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991163/2020 Original EPI_ISL_722995 2020-12-06 2020-12-21 29,809 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991139/2020 Original EPI_ISL_722994 2020-12-04 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991138/2020 Original EPI_ISL_722993 2020-12-06 2020-12-21 29,833 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991136/2020 Original EPI_ISL_722992 2020-12-05 2020-12-21 29,842 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990306/2020 Original EPI_ISL_722991 2020-12-05 2020-12-21 29,803 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990305/2020 Original EPI_ISL_722990 2020-12-05 2020-12-21 29,846 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990304/2020 Original EPI_ISL_722989 2020-12-05 2020-12-21 29,801 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990301/2020 Original EPI_ISL_722988 2020-12-04 2020-12-21 29,864 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990297/2020 Original EPI_ISL_722987 2020-12-04 2020-12-21 29,826 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990295/2020 Original EPI_ISL_722986 2020-12-04 2020-12-21 29,827 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990292/2020 Original EPI_ISL_722985 2020-12-04 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990287/2020 Original EPI_ISL_722984 2020-12-04 2020-12-21 29,829 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990265/2020 Original EPI_ISL_722983 2020-12-04 2020-12-21 29,836 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990261/2020 Original EPI_ISL_722982 2020-12-04 2020-12-21 29,800 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990257/2020 Original EPI_ISL_722981 2020-12-04 2020-12-21 29,841 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990131/2020 Original EPI_ISL_722980 2020-12-04 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990128/2020 Original EPI_ISL_722979 2020-12-04 2020-12-21 29,806 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204920069/2020 Original EPI_ISL_722978 2020-11-30 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204920068/2020 Original EPI_ISL_722977 2020-11-30 2020-12-21 29,826 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46011/2020 Original EPI_ISL_718606 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C471A4/2020 Original EPI_ISL_718726 2020-12-10 2020-12-21 29,475 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C453EC/2020 Original EPI_ISL_718567 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46776/2020 Original EPI_ISL_718621 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46D65/2020 Original EPI_ISL_718562 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C425DA/2020 Original EPI_ISL_719206 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E4D4/2020 Original EPI_ISL_719200 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FAB3/2020 Original EPI_ISL_719202 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E6ED/2020 Original EPI_ISL_719201 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E28/2020 Original EPI_ISL_719110 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40C6E/2020 Original EPI_ISL_719231 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EFE2/2020 Original EPI_ISL_719119 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C437D3/2020 Original EPI_ISL_719237 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB56/2020 Original EPI_ISL_719116 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E46/2020 Original EPI_ISL_719118 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44F34/2020 Original EPI_ISL_719239 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41BCA/2020 Original EPI_ISL_719238 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F075/2020 Original EPI_ISL_719112 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42A62/2020 Original EPI_ISL_719233 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FAD1/2020 Original EPI_ISL_719111 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42279/2020 Original EPI_ISL_719232 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB1A/2020 Original EPI_ISL_719114 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43991/2020 Original EPI_ISL_719234 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E6A1/2020 Original EPI_ISL_719220 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C436B8/2020 Original EPI_ISL_719109 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40C13/2020 Original EPI_ISL_719229 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB38/2020 Original EPI_ISL_719108 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43ABC/2020 Original EPI_ISL_719105 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42B14/2020 Original EPI_ISL_719106 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EE8B/2020 Original EPI_ISL_719227 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FA95/2020 Original EPI_ISL_719101 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B07/2020 Original EPI_ISL_719222 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42E93/2020 Original EPI_ISL_719100 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44EDD/2020 Original EPI_ISL_719224 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E50E/2020 Original EPI_ISL_719102 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43BD7/2020 Original EPI_ISL_719223 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C464BB/2020 Original EPI_ISL_719314 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44893/2020 Original EPI_ISL_719313 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F3F4/2020 Original EPI_ISL_719316 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43F9F/2020 Original EPI_ISL_719310 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44268/2020 Original EPI_ISL_719312 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43F35/2020 Original EPI_ISL_719306 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C479CA/2020 Original EPI_ISL_719309 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FF1E/2020 Original EPI_ISL_719303 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C457C2/2020 Original EPI_ISL_719302 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44B30/2020 Original EPI_ISL_719304 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47E34/2020 Original EPI_ISL_718886 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4702F/2020 Original EPI_ISL_718884 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C48219/2020 Original EPI_ISL_718885 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C475D5/2020 Original EPI_ISL_718882 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C499B9/2020 Original EPI_ISL_718880 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C4806A/2020 Original EPI_ISL_718881 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47766/2020 Original EPI_ISL_718876 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B52/2020 Original EPI_ISL_718994 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C429ED/2020 Original EPI_ISL_718995 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C3FAE0/2020 Original EPI_ISL_719150 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40C5F/2020 Original EPI_ISL_719271 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43788/2020 Original EPI_ISL_719270 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40EB3/2020 Original EPI_ISL_719039 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40C40/2020 Original EPI_ISL_719159 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E19/2020 Original EPI_ISL_719038 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C439FB/2020 Original EPI_ISL_719277 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4230D/2020 Original EPI_ISL_719156 2020-12-10 2020-12-21 29,751 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E5FF/2020 Original EPI_ISL_719035 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E54A/2020 Original EPI_ISL_719155 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42A26/2020 Original EPI_ISL_719034 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42534/2020 Original EPI_ISL_719037 2020-12-10 2020-12-21 29,633 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EFB5/2020 Original EPI_ISL_719157 2020-12-10 2020-12-21 29,754 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43B13/2020 Original EPI_ISL_719036 2020-12-10 2020-12-21 29,751 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B8F/2020 Original EPI_ISL_719020 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C422A6/2020 Original EPI_ISL_719141 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43B5F/2020 Original EPI_ISL_719262 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42525/2020 Original EPI_ISL_719140 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C412F2/2020 Original EPI_ISL_719264 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C425CB/2020 Original EPI_ISL_719021 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E5E0/2020 Original EPI_ISL_719142 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40EA4/2020 Original EPI_ISL_719263 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44101/2020 Original EPI_ISL_719149 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42AAE/2020 Original EPI_ISL_719028 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F093/2020 Original EPI_ISL_719269 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43894/2020 Original EPI_ISL_719027 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40EE0/2020 Original EPI_ISL_719029 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42ACC/2020 Original EPI_ISL_719266 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44F52/2020 Original EPI_ISL_719145 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB65/2020 Original EPI_ISL_719024 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43700/2020 Original EPI_ISL_719023 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42E48/2020 Original EPI_ISL_719026 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44EA0/2020 Original EPI_ISL_719147 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43937/2020 Original EPI_ISL_719268 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C422B5/2020 Original EPI_ISL_719025 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F0B1/2020 Original EPI_ISL_719146 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A25/2020 Original EPI_ISL_719267 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43B7D/2020 Original EPI_ISL_719219 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41C4F/2020 Original EPI_ISL_719215 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43973/2020 Original EPI_ISL_719214 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40EFF/2020 Original EPI_ISL_719217 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C425F8/2020 Original EPI_ISL_719216 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4366D/2020 Original EPI_ISL_719211 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42385/2020 Original EPI_ISL_719210 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E51D/2020 Original EPI_ISL_719213 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43630/2020 Original EPI_ISL_719208 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43BC8/2020 Original EPI_ISL_719207 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C429DE/2020 Original EPI_ISL_719209 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43AE9/2020 Original EPI_ISL_719204 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44F43/2020 Original EPI_ISL_719203 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C43C3E/2020 Original EPI_ISL_719183 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44110/2020 Original EPI_ISL_719061 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41B9D/2020 Original EPI_ISL_719068 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4381C/2020 Original EPI_ISL_719189 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F00C/2020 Original EPI_ISL_719067 2020-12-10 2020-12-21 29,754 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B43/2020 Original EPI_ISL_719069 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43867/2020 Original EPI_ISL_719130 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4231C/2020 Original EPI_ISL_719251 2020-12-10 2020-12-21 29,751 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F0C0/2020 Original EPI_ISL_719250 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E6DE/2020 Original EPI_ISL_719132 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F066/2020 Original EPI_ISL_719010 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42E1B/2020 Original EPI_ISL_719131 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E568/2020 Original EPI_ISL_719252 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F01B/2020 Original EPI_ISL_719017 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB47/2020 Original EPI_ISL_719258 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E4F2/2020 Original EPI_ISL_719137 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E73/2020 Original EPI_ISL_719139 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42349/2020 Original EPI_ISL_719018 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C437E2/2020 Original EPI_ISL_719013 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40BAD/2020 Original EPI_ISL_719134 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C440D7/2020 Original EPI_ISL_719255 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B25/2020 Original EPI_ISL_719133 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FA3B/2020 Original EPI_ISL_719015 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43B6E/2020 Original EPI_ISL_719257 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A34/2020 Original EPI_ISL_719014 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42367/2020 Original EPI_ISL_719000 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40DE3/2020 Original EPI_ISL_719121 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42B50/2020 Original EPI_ISL_719242 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E595/2020 Original EPI_ISL_719120 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42A17/2020 Original EPI_ISL_719241 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E64/2020 Original EPI_ISL_719009 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C436F4/2020 Original EPI_ISL_719127 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EE5E/2020 Original EPI_ISL_719247 2020-12-10 2020-12-21 29,751 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42A53/2020 Original EPI_ISL_719005 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FB74/2020 Original EPI_ISL_719129 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40C04/2020 Original EPI_ISL_719007 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42B7E/2020 Original EPI_ISL_719128 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43C89/2020 Original EPI_ISL_719123 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FA77/2020 Original EPI_ISL_719244 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43BF5/2020 Original EPI_ISL_719004 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A61/2020 Original EPI_ISL_719125 2020-12-10 2020-12-21 29,283 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4365E/2020 Original EPI_ISL_719246 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C437B5/2020 Original EPI_ISL_719003 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41C12/2020 Original EPI_ISL_719124 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42376/2020 Original EPI_ISL_719152 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40C22/2020 Original EPI_ISL_719273 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EE03/2020 Original EPI_ISL_719272 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A70/2020 Original EPI_ISL_719033 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E692/2020 Original EPI_ISL_719153 2020-12-10 2020-12-21 29,762 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40EC2/2020 Original EPI_ISL_719274 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C42A9F/2020 Original EPI_ISL_719057 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45249/2020 Original EPI_ISL_719299 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B9E/2020 Original EPI_ISL_719178 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EE6D/2020 Original EPI_ISL_719056 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A43/2020 Original EPI_ISL_719177 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44B4F/2020 Original EPI_ISL_719298 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EED6/2020 Original EPI_ISL_719059 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EFF1/2020 Original EPI_ISL_719058 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4413E/2020 Original EPI_ISL_719041 2020-12-10 2020-12-21 29,754 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43779/2020 Original EPI_ISL_719162 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C447E1/2020 Original EPI_ISL_719283 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E4E3/2020 Original EPI_ISL_719043 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4416B/2020 Original EPI_ISL_719164 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4522B/2020 Original EPI_ISL_719280 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F02A/2020 Original EPI_ISL_719161 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44040/2020 Original EPI_ISL_719282 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42552/2020 Original EPI_ISL_719049 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A16/2020 Original EPI_ISL_719046 2020-12-10 2020-12-21 29,760 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44884/2020 Original EPI_ISL_719288 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E656/2020 Original EPI_ISL_719167 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4132C/2020 Original EPI_ISL_719287 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40BBC/2020 Original EPI_ISL_719166 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C422E2/2020 Original EPI_ISL_719045 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41C30/2020 Original EPI_ISL_719169 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4368B/2020 Original EPI_ISL_719047 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4408C/2020 Original EPI_ISL_719289 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F084/2020 Original EPI_ISL_719075 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C436A9/2020 Original EPI_ISL_719196 2020-12-10 2020-12-21 29,633 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FA68/2020 Original EPI_ISL_719074 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4233A/2020 Original EPI_ISL_719195 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E6CF/2020 Original EPI_ISL_719077 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C422C4/2020 Original EPI_ISL_719076 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43621/2020 Original EPI_ISL_719197 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42561/2020 Original EPI_ISL_719071 2020-12-10 2020-12-21 29,633 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C429FC/2020 Original EPI_ISL_719191 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E37/2020 Original EPI_ISL_719073 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43876/2020 Original EPI_ISL_719194 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43C2F/2020 Original EPI_ISL_719072 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43ADA/2020 Original EPI_ISL_719193 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42F27/2020 Original EPI_ISL_719190 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40E1D/2020 Original EPI_ISL_719079 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E6FC/2020 Original EPI_ISL_719064 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E91/2020 Original EPI_ISL_719185 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F039/2020 Original EPI_ISL_719063 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B61/2020 Original EPI_ISL_719066 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42E2A/2020 Original EPI_ISL_719065 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E0A/2020 Original EPI_ISL_719186 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43982/2020 Original EPI_ISL_719060 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42358/2020 Original EPI_ISL_719181 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4376A/2020 Original EPI_ISL_719062 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/CAMC-C4764B/2020 Original EPI_ISL_718947 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47748/2020 Original EPI_ISL_718824 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47414/2020 Original EPI_ISL_718825 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47687/2020 Original EPI_ISL_718946 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47863/2020 Original EPI_ISL_718822 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49C74/2020 Original EPI_ISL_718823 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47159/2020 Original EPI_ISL_718944 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46F05/2020 Original EPI_ISL_718941 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C482A0/2020 Original EPI_ISL_718821 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46C4A/2020 Original EPI_ISL_718942 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C479BB/2020 Original EPI_ISL_718818 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C478AF/2020 Original EPI_ISL_718934 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47845/2020 Original EPI_ISL_718933 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47DFB/2020 Original EPI_ISL_718930 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46ECC/2020 Original EPI_ISL_718931 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42288/2020 Original EPI_ISL_719097 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41BBB/2020 Original EPI_ISL_719098 2020-12-10 2020-12-21 29,633 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43A8F/2020 Original EPI_ISL_719093 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4417A/2020 Original EPI_ISL_719092 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42AEA/2020 Original EPI_ISL_719094 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E82/2020 Original EPI_ISL_719085 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C425E9/2020 Original EPI_ISL_719088 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44E55/2020 Original EPI_ISL_719087 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3EE21/2020 Original EPI_ISL_719082 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43885/2020 Original EPI_ISL_719081 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43BE6/2020 Original EPI_ISL_719084 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44EBF/2020 Original EPI_ISL_719083 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C437A6/2020 Original EPI_ISL_719080 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40B16/2020 Original EPI_ISL_719089 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47872/2020 Original EPI_ISL_718905 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C478FA/2020 Original EPI_ISL_718906 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C4804C/2020 Original EPI_ISL_718903 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47793/2020 Original EPI_ISL_718904 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4760F/2020 Original EPI_ISL_718900 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42A80/2020 Original EPI_ISL_719174 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45838/2020 Original EPI_ISL_719295 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42507/2020 Original EPI_ISL_719052 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C422D3/2020 Original EPI_ISL_719055 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43FCC/2020 Original EPI_ISL_719297 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40AEC/2020 Original EPI_ISL_719175 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C400EA/2020 Original EPI_ISL_719296 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40BDA/2020 Original EPI_ISL_719170 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C439EC/2020 Original EPI_ISL_719291 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43348/2020 Original EPI_ISL_719290 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41BE8/2020 Original EPI_ISL_719051 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C43BB9/2020 Original EPI_ISL_719172 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C457FF/2020 Original EPI_ISL_719293 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4232B/2020 Original EPI_ISL_719050 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C42A44/2020 Original EPI_ISL_719171 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4523A/2020 Original EPI_ISL_719292 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/ALDP-C49B2C/2020 Original EPI_ISL_718844 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47757/2020 Original EPI_ISL_718965 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47890/2020 Original EPI_ISL_718845 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46DFC/2020 Original EPI_ISL_718842 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47186/2020 Original EPI_ISL_718840 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C477DF/2020 Original EPI_ISL_718961 2020-12-10 2020-12-21 29,475 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46E17/2020 Original EPI_ISL_718960 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C48282/2020 Original EPI_ISL_718839 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C481B2/2020 Original EPI_ISL_718959 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46B98/2020 Original EPI_ISL_718835 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4757B/2020 Original EPI_ISL_718956 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47775/2020 Original EPI_ISL_718836 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C478EB/2020 Original EPI_ISL_718834 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C48079/2020 Original EPI_ISL_718955 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C475C6/2020 Original EPI_ISL_718951 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3E629/2020 Original EPI_ISL_718989 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46EDB/2020 Original EPI_ISL_718869 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C40E95/2020 Original EPI_ISL_718987 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FAFF/2020 Original EPI_ISL_718988 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47CA3/2020 Original EPI_ISL_718865 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47265/2020 Original EPI_ISL_718862 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C41C8B/2020 Original EPI_ISL_718984 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46E53/2020 Original EPI_ISL_718861 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3F0A2/2020 Original EPI_ISL_718982 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4369A/2020 Original EPI_ISL_718980 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47DEC/2020 Original EPI_ISL_718859 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C470B6/2020 Original EPI_ISL_718855 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49CED/2020 Original EPI_ISL_718976 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C475F3/2020 Original EPI_ISL_718856 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47DCE/2020 Original EPI_ISL_718974 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C48228/2020 Original EPI_ISL_718854 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46BE3/2020 Original EPI_ISL_718851 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4711D/2020 Original EPI_ISL_718972 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47371/2020 Original EPI_ISL_718852 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47933/2020 Original EPI_ISL_718973 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C477C0/2020 Original EPI_ISL_718971 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C478DC/2020 Original EPI_ISL_718927 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4798E/2020 Original EPI_ISL_718928 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C471B3/2020 Original EPI_ISL_718925 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C482CE/2020 Original EPI_ISL_718926 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47362/2020 Original EPI_ISL_718921 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C476F0/2020 Original EPI_ISL_718920 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47669/2020 Original EPI_ISL_718909 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47E16/2020 Original EPI_ISL_718907 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47784/2020 Original EPI_ISL_718916 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C47F31/2020 Original EPI_ISL_718917 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4765A/2020 Original EPI_ISL_718912 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47915/2020 Original EPI_ISL_718913 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C472DE/2020 Original EPI_ISL_718949 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46EAE/2020 Original EPI_ISL_718826 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/MILK-BFF4FE/2020 Original EPI_ISL_720758 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFD5FD/2020 Original EPI_ISL_720757 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB1B7B/2020 Original EPI_ISL_720513 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB071E/2020 Original EPI_ISL_720634 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB072D/2020 Original EPI_ISL_720638 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCEF3/2020 Original EPI_ISL_720759 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C05CA1/2020 Original EPI_ISL_720765 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF94A/2020 Original EPI_ISL_720763 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB813/2020 Original EPI_ISL_720641 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB2196/2020 Original EPI_ISL_720503 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAFAFB/2020 Original EPI_ISL_720629 2020-11-17 2020-12-21 29,283 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/QEUH-C03E52/2020 Original EPI_ISL_720749 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Glasgow Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0AAC/2020 Original EPI_ISL_720633 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB222A/2020 Original EPI_ISL_720417 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB8B9/2020 Original EPI_ISL_720659 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB02A4/2020 Original EPI_ISL_720416 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAFD2F/2020 Original EPI_ISL_720414 2020-11-17 2020-12-21 29,633 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFDED4/2020 Original EPI_ISL_720777 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB073C/2020 Original EPI_ISL_720541 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/QEUH-C011F1/2020 Original EPI_ISL_720786 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Glasgow Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB86E/2020 Original EPI_ISL_720422 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAFC7D/2020 Original EPI_ISL_720664 2020-11-17 2020-12-21 29,633 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BABF96/2020 Original EPI_ISL_720526 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAFC40/2020 Original EPI_ISL_720647 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0893/2020 Original EPI_ISL_720403 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0C3D/2020 Original EPI_ISL_720408 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB804/2020 Original EPI_ISL_720649 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCB74/2020 Original EPI_ISL_720718 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCEA8/2020 Original EPI_ISL_720716 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C04F30/2020 Original EPI_ISL_720715 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCEE4/2020 Original EPI_ISL_720721 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCB56/2020 Original EPI_ISL_720720 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFD575/2020 Original EPI_ISL_720700 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCBCF/2020 Original EPI_ISL_720705 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF91D/2020 Original EPI_ISL_720708 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0778/2020 Original EPI_ISL_720614 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFDEE3/2020 Original EPI_ISL_720739 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAC8A9/2020 Original EPI_ISL_720617 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCE20/2020 Original EPI_ISL_720737 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCD50/2020 Original EPI_ISL_720743 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB06A8/2020 Original EPI_ISL_720602 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BABA1D/2020 Original EPI_ISL_720601 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB1FD9/2020 Original EPI_ISL_720608 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF643/2020 Original EPI_ISL_720729 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF494/2020 Original EPI_ISL_720731 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C470A7/2020 Original EPI_ISL_718848 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47098/2020 Original EPI_ISL_718969 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47423/2020 Original EPI_ISL_718846 2020-12-11 2020-12-21 29,475 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49AA7/2020 Original EPI_ISL_718967 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46E26/2020 Original EPI_ISL_718968 2020-12-11 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/ALDP-C04C0C/2020 Original EPI_ISL_720814 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCEC6/2020 Original EPI_ISL_720818 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCCAE/2020 Original EPI_ISL_720801 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCF1E/2020 Original EPI_ISL_720806 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCDBA/2020 Original EPI_ISL_720807 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB109A/2020 Original EPI_ISL_720394 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB074B/2020 Original EPI_ISL_720391 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB1AF6/2020 Original EPI_ISL_720364 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB05F6/2020 Original EPI_ISL_720369 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAFBDA/2020 Original EPI_ISL_720367 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BABFD2/2020 Original EPI_ISL_720488 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB8F5/2020 Original EPI_ISL_720469 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB840/2020 Original EPI_ISL_720351 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0769/2020 Original EPI_ISL_720478 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB111F/2020 Original EPI_ISL_720597 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB2169/2020 Original EPI_ISL_720382 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB070F/2020 Original EPI_ISL_720385 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0AF7/2020 Original EPI_ISL_720388 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAC3A8/2020 Original EPI_ISL_720497 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0BC7/2020 Original EPI_ISL_720559 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCE11/2020 Original EPI_ISL_720678 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF519/2020 Original EPI_ISL_720680 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAFC6E/2020 Original EPI_ISL_720563 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/QEUH-C01382/2020 Original EPI_ISL_720684 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Glasgow Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCED5/2020 Original EPI_ISL_720682 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB21F0/2020 Original EPI_ISL_720445 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C04BC3/2020 Original EPI_ISL_720686 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C04F21/2020 Original EPI_ISL_720685 2020-12-04 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-C00875/2020 Original EPI_ISL_720669 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB85F/2020 Original EPI_ISL_720551 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCE7B/2020 Original EPI_ISL_720793 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF528/2020 Original EPI_ISL_720670 2020-12-02 2020-12-21 28,995 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCC9F/2020 Original EPI_ISL_720677 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF93B/2020 Original EPI_ISL_720676 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF661/2020 Original EPI_ISL_720675 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFD5B1/2020 Original EPI_ISL_720674 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0B8B/2020 Original EPI_ISL_720461 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB075A/2020 Original EPI_ISL_720467 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB822/2020 Original EPI_ISL_720588 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB8E6/2020 Original EPI_ISL_720466 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB0DA3/2020 Original EPI_ISL_720328 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB1944/2020 Original EPI_ISL_720326 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFD214/2020 Original EPI_ISL_720689 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB07C3/2020 Original EPI_ISL_720453 2020-11-17 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFCD9C/2020 Original EPI_ISL_720693 2020-12-03 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BABB38/2020 Original EPI_ISL_720450 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFF546/2020 Original EPI_ISL_720692 2020-12-02 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BFDEB6/2020 Original EPI_ISL_720699 2020-12-01 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BAB88C/2020 Original EPI_ISL_720333 2020-11-17 2020-12-21 29,283 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/MILK-BB1B6C/2020 Original EPI_ISL_720516 2020-11-18 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Milton Keynes Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

While posting the 281 variant COVID sequences released at GISAID today, 100's more were release (although these included some earlier sequences)

Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/England/205080325/2020 Original EPI_ISL_723044 2020-12-11 2020-12-21 29,837 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205041873/2020 Original EPI_ISL_723042 2020-12-09 2020-12-21 29,826 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205090046/2020 Original EPI_ISL_723007 2020-12-12 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205090043/2020 Original EPI_ISL_723006 2020-12-11 2020-12-21 29,835 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080626/2020 Original EPI_ISL_723005 2020-12-09 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080622/2020 Original EPI_ISL_723004 2020-12-09 2020-12-21 29,804 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080621/2020 Original EPI_ISL_723003 2020-12-09 2020-12-21 29,800 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080620/2020 Original EPI_ISL_723002 2020-12-09 2020-12-21 29,802 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080610/2020 Original EPI_ISL_723001 2020-12-09 2020-12-21 29,827 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080372/2020 Original EPI_ISL_723000 2020-12-10 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205080329/2020 Original EPI_ISL_722999 2020-12-11 2020-12-21 29,831 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205020540/2020 Original EPI_ISL_722998 2020-12-07 2020-12-21 29,834 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205020474/2020 Original EPI_ISL_722997 2020-12-07 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/205020463/2020 Original EPI_ISL_722996 2020-12-07 2020-12-21 29,810 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991163/2020 Original EPI_ISL_722995 2020-12-06 2020-12-21 29,809 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991139/2020 Original EPI_ISL_722994 2020-12-04 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991138/2020 Original EPI_ISL_722993 2020-12-06 2020-12-21 29,833 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204991136/2020 Original EPI_ISL_722992 2020-12-05 2020-12-21 29,842 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990306/2020 Original EPI_ISL_722991 2020-12-05 2020-12-21 29,803 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990305/2020 Original EPI_ISL_722990 2020-12-05 2020-12-21 29,846 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990304/2020 Original EPI_ISL_722989 2020-12-05 2020-12-21 29,801 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990301/2020 Original EPI_ISL_722988 2020-12-04 2020-12-21 29,864 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990297/2020 Original EPI_ISL_722987 2020-12-04 2020-12-21 29,826 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990295/2020 Original EPI_ISL_722986 2020-12-04 2020-12-21 29,827 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990292/2020 Original EPI_ISL_722985 2020-12-04 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990287/2020 Original EPI_ISL_722984 2020-12-04 2020-12-21 29,829 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990265/2020 Original EPI_ISL_722983 2020-12-04 2020-12-21 29,836 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990261/2020 Original EPI_ISL_722982 2020-12-04 2020-12-21 29,800 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990257/2020 Original EPI_ISL_722981 2020-12-04 2020-12-21 29,841 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990131/2020 Original EPI_ISL_722980 2020-12-04 2020-12-21 29,805 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204990128/2020 Original EPI_ISL_722979 2020-12-04 2020-12-21 29,806 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204920069/2020 Original EPI_ISL_722978 2020-11-30 2020-12-21 29,832 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/204920068/2020 Original EPI_ISL_722977 2020-11-30 2020-12-21 29,826 Human Europe / United Kingdom / England Respiratory Virus Unit, National Infection Service, Public Health England COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46011/2020 Original EPI_ISL_718606 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C471A4/2020 Original EPI_ISL_718726 2020-12-10 2020-12-21 29,475 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C453EC/2020 Original EPI_ISL_718567 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46776/2020 Original EPI_ISL_718621 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46D65/2020 Original EPI_ISL_718562 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4704D/2020 Original EPI_ISL_718737 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C463EB/2020 Original EPI_ISL_718559 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46A5F/2020 Original EPI_ISL_718614 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C45C1E/2020 Original EPI_ISL_718611 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/ALDP-C49940/2020 Original EPI_ISL_718633 2020-12-12 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Alderley Park Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C47827/2020 Original EPI_ISL_718634 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C3FDBA/2020 Original EPI_ISL_718555 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C4714A/2020 Original EPI_ISL_718731 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46345/2020 Original EPI_ISL_718610 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44D2B/2020 Original EPI_ISL_718599 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C44C79/2020 Original EPI_ISL_718552 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium hCoV-19/England/CAMC-C46B2F/2020 Original EPI_ISL_718575 2020-12-10 2020-12-21 29,763 Human Europe / United Kingdom / England Lighthouse Lab in Cambridge Wellcome Sanger Institute for the COVID-19 Genomics UK (COG-UK) Consortium

281 Variant UK COVID sequences were released today at GISAID. Most were collected on Dec 10, with additional collections on Dec 11 & Dec 12.

Louisiana Coronavirus (COVID-19) Information 1,111 New Cases* 65 New Deaths* 12,042 New Tests* 287,261 Total Cases 7,107 Total Deaths 4,135,757 Total Tests 264,187 Confirmed 6,775 Confirmed 3,958,235 Molecular 23,074 Probable 332 Probable 177,522 Antigen COVID Patients 1,590 in Hospitals* COVID Patients 174 on Ventilators* Presumed Recovered 232,725 as of December 14th* https://ldh.la.gov/coronavirus/

Coronavirus Disease 2019 (COVID-19) in Illinois Total Cases 905,069 Confirmed Deaths 15,299 Probable Deaths 1,228 Total Tests Performed* 12,520,979 Recovery Rate** 98% *Total molecular and antigen tests performed and reported electronically for testing of COVID-19 at IDPH, commercial or hospital laboratories. All numbers displayed are provisional and will change. ** Recovered cases are defined as persons with initial positive specimen collection date > 42 days who have not expired. http://www.dph.illinois.gov/covid19#tab-0-0 Recovery rate is calculated as the recovered cases divided by the sum of recovered cases and deceased cases. Information regarding the number of persons under investigation updated on 12/21/2020. Information to be updated daily.

Middlesex County 394 New Positives 1,384 Confirmed Deaths 40,626 Positive Test Results 212 Probable Deaths Ocean County 295 New Positives 1,189 Confirmed Deaths 28,936 Positive Test Results 71 Probable Deaths Monmouth County 278 New Positives 868 Confirmed Deaths 28,237 Positive Test Results 96 Probable Deaths Bergen County 240 New Positives 1,992 Confirmed Deaths 43,370 Positive Test Results 256 Probable Deaths Essex County 226 New Positives 2,092 Confirmed Deaths 44,015 Positive Test Results 239 Probable Deaths Hudson County 224 New Positives 1,499 Confirmed Deaths 39,991 Positive Test Results 161 Probable Deaths Passaic County 199 New Positives 1,249 Confirmed Deaths 37,685 Positive Test Results 146 Probable Deaths Morris County 188 New Positives 761 Confirmed Deaths 18,307 Positive Test Results 170 Probable Deaths Burlington County 187 New Positives 549 Confirmed Deaths 18,654 Positive Test Results 45 Probable Deaths Camden County 169 New Positives 701 Confirmed Deaths 25,955 Positive Test Results 58 Probable Deaths Union County 134 New Positives 1,332 Confirmed Deaths 34,388 Positive Test Results 173 Probable Deaths Atlantic County 108 New Positives 320 Confirmed Deaths 10,767 Positive Test Results 15 Probable Deaths Mercer County 98 New Positives 663 Confirmed Deaths 17,450 Positive Test Results 37 Probable Deaths Gloucester County 88 New Positives 339 Confirmed Deaths 12,600 Positive Test Results 8 Probable Deaths Somerset County 87 New Positives 561 Confirmed Deaths 11,589 Positive Test Results 84 Probable Deaths Warren County 58 New Positives 166 Confirmed Deaths 3,471 Positive Test Results 13 Probable Deaths Sussex County 52 New Positives 165 Confirmed Deaths 3,800 Positive Test Results 42 Probable Deaths Hunterdon County 40 New Positives 80 Confirmed Deaths 3,376 Positive Test Results 54 Probable Deaths Cumberland County 35 New Positives 193 Confirmed Deaths 6,903 Positive Test Results 9 Probable Deaths Cape May County 25 New Positives 113 Confirmed Deaths 2,159 Positive Test Results 14 Probable Deaths Salem County 16 New Positives 99 Confirmed Deaths 2,405 Positive Test Results 5 Probable Deaths https://www.nj.gov/health/cd/topics/covid2019_dashboard.shtml

https://covid19.ncdhhs.gov/dashboard/cases

https://www.azdhs.gov/preparedness/epidemiology-disease-control/infectious-disease-epidemiology/covid-19/dashboards/index.php

CASES 324,832 TOTAL 264,791 CONFIRMED 60,041 PROBABLE LAST 14 DAYS 53,568 CASES 142,385 TESTED (DIAGNOSTIC) *TOTAL HOSPITALIZATIONS To Date Updates M-F at 3 p.m. 30,224 STATEWIDE DEATHS 4,389 TOTAL 3,849 CONFIRMED 540 PROBABLE TOTAL TESTED 1,790,301 DIAGNOSTIC 82,229 ANTIBODY PRESUMED RECOVERIES Updated Weekly 183,625 STATEWIDE https://alpublichealth.maps.arcgis.com/apps/opsdashboard/index.html#/6d2771faa9da4a2786a509d82c8cf0f7

https://www.health.pa.gov/topics/disease/coronavirus/Pages/Cases.aspx#

https://www.vdh.virginia.gov/coronavirus/covid-19-in-virginia/

There are 389,767 confirmed COVID-19 patients in Missouri, including 2,239 deaths https://www.kshb.com/news/coronavirus/covid-19-case-tracker-where-we-stand-in-mo-ks-nationwide Adair County 1,586 4 Andrew County 1,485 15 Atchison County 255 4 Audrain County 1,493 31 Barry County 2,186 40 Barton County 725 7 Bates County 723 10 Benton County 1,134 15 Bollinger County 1,051 12 Boone County 12,580 43 Buchanan County 5,901 118 Butler County 3,281 32 Caldwell County 495 3 Callaway County 3,495 28 Camden County 2,922 58 Cape Girardeau County 6,109 105 Carroll County 593 9 Carter County 354 6 Cass County 5,060 48 Cedar County 483 8 Chariton County 298 2 Christian County 5,041 35 Clark County 344 4 Clay County 6,305 87 Clinton County 1,156 50 Cole County 7,192 77 Cooper County 1,414 17 Crawford County 1,494 15 Dade County 338 8 Dallas County 669 14 Daviess County 429 9 DeKalb County 719 17 Dent County 648 6 Douglas County 557 19 Dunklin County 2,472 18 Franklin County 6,305 108 Gasconade County 613 29 Gentry County 563 15 Greene County 19,017 260 Grundy County 628 19 Harrison County 579 7 Henry County 1,349 19 Hickory County 410 6 Holt County 416 13 Howard County 592 2 Howell County 2,144 35 Iron County 329 1 Jackson County 21,519 207 Jasper County 10,720 178 Jefferson County 15,307 121 Johnson County 3,355 30 Knox County 146 1 Laclede County 2,329 39 Lafayette County 1,879 40 Lawrence County 2,190 41 Lewis County 501 2 Lincoln County 3,246 33 Linn County 392 11 Livingston County 953 19 McDonald County 1,864 24 Macon County 851 5 Madison County 1,097 10 Maries County 433 6 Marion County 2,197 23 Mercer County 119 1 Miller County 1,902 42 Mississippi County 1,284 13 Moniteau County 1,599 17 Monroe County 473 5 Montgomery County 452 6 Morgan County 1,374 16 New Madrid County 1,705 30 Newton County 3,678 61 Nodaway County 2,224 18 Oregon County 495 3 Osage County 1,110 6 Ozark County 349 4 Pemiscot County 1,405 26 Perry County 1,835 20 Pettis County 3,902 50 Phelps County 2,256 76 Pike County 1,178 11 Platte County 2,195 22 Polk County 1,709 16 Pulaski County 4,695 34 Putnam County 188 1 Ralls County 599 4 Randolph County 1,503 15 Ray County 981 7 Reynolds County 215 2 Ripley County 627 8 St. Charles County 27,267 299 St. Clair County 418 4 Ste. Genevieve County 1,407 2 St. Francois County 6,070 58 St. Louis County 64,375 1,281 Saline County 2,059 40 Schuyler County 178 1 Scotland County 217 3 Scott County 3,306 59 Shannon County 395 9 Shelby County 279 1 Stoddard County 2,537 56 Stone County 1,505 23 Sullivan County 618 9 Taney County 3,553 47 Texas County 1,249 13 Vernon County 877 13 Warren County 1,828 17 Washington County 1,671 34 Wayne County 614 4 Webster County 2,238 35 Worth County 106 0 Wright County 953 19 St. Louis city 15,078 281 Kansas City 28,006 327 TBD TOTALS 389,767 5427 Note: Positive cases and deaths reported by the Joplin Health Department are included with the Jasper County Health Department figures.

https://coronavirus.iowa.gov/#CurrentStatus

By Los Angeles Times Staff Updated Dec. 20, 10:38 p.m. Pacific 1,866,392 confirmed cases +27,174 on Sunday 22,676 deaths +78 on Sunday To better understand the COVID-19 pandemic, The Times is conducting an independent, continual survey of dozens of local health agencies across the state. What we know Stay-at-home orders have returned. Most of the state, including Los Angeles County, is currently under stricter rules. New cases have been surging. Over the last seven days, the state has averaged 41,833 cases per day, a 104.9% increase from two weeks ago. Roughly 12.9% of tests this past week have come back positive. Deaths are on the rise. The state has averaged 233.1 daily deaths over the last week, an increase of 107.6% from two weeks ago. Hospitalizations have never been higher. Statewide, there are 16,843 people hospitalized with a confirmed case, 73% more than two weeks ago. Among those patients, 3,614 are in intensive care. Disparities in age and race persist. Roughly 74% of the dead were 65 or older. After adjusting for population, Latinos are now 2.7 times more likely than whites to test positive. California counties +Other trackers +More coverage + Jump to a section Totals Hotspots Maps Hospitals Vaccine Tests Demographics Nursing homes State rankings The latest totals Coronavirus can infect people so rapidly that it has continued to spread despite shutdown orders aimed at slowing the growth of new cases and flattening the line below. The number of cases in California is now on pace to double every 27.2 days, a number used to measure how quickly the virus is spreading. CasesDeaths Cumulative cases Feb.AprilJuneAug.Oct.Dec.0500,0001,000,0001,500,0002,000,000Stay-at-home orderStay-at-home orderGovernoreases limitsGovernoreases limits1,866,392Dec. 20 Times survey of county and local health departments Local governments announce new cases and deaths each day, though bottlenecks in bureaucracy can introduce delays. For instance, some agencies do not report new totals on holidays and weekends, leading to lower numbers on those days. Over the past week, the state has averaged 41,833 new cases and 233.1 new deaths per day. Experts say the true number of people infected is unknown and likely much higher than official tallies. New cases by day Feb.AprilJuneAug.Oct.Dec.010,00020,00030,00040,00050,0007-dayaverage7-dayaverage Deaths by day Feb.AprilJuneAug.Oct.Dec.01002003004007-dayaverage7-dayaverage Seven-day averages offer a more stable view of the trend than daily totals. On the cases chart, gray bars mark when errors in a state computer system delayed the tabulation of new cases. Where new cases are concentrated State officials study the latest data and then rate regions and counties to determine when and how businesses reopen. The government doesn‘t release enough data to replicate its analysis, but the rate of new cases per 100,000 residents over the last seven days provides insight into where the virus is spreading. Metric CasesDeaths Method Per 100kTotals Regions ranked by new cases per 100,000 residents 1. Southern California 828 cases per 100k in last 7 days828 cases per 100k in last 7 days7-day average │7-day average │March 1Dec. 21 2. San Joaquin Valley 643.3643.37-day average │7-day average │March 1Dec. 21 3. Greater Sacramento 458.5458.57-day average │7-day average │March 1Dec. 21 4. Northern California 404.8404.87-day average │7-day average │March 1Dec. 21 5. Bay Area 369.8369.87-day average │7-day average │March 1Dec. 21 After adjusting for population, the virus is now categorized as widespread in 55 the state's 58 counties, which results in stricter rules being put into place. Together they are home to 99% of California residents. Metric CasesDeaths Method Per 100kTotals Counties ranked by new cases per 100,000 residents 1. Lassen 2,353.7 cases per 100k in last 7 days2,353.7 cases per 100k in last 7 days7-day average │7-day average │March 1Dec. 21 2. San Bernardino 1,447.81,447.87-day average │7-day average │March 1Dec. 21 3. Tuolumne 1,197.81,197.87-day average │7-day average │March 1Dec. 21 4. Riverside 1,179.51,179.57-day average │7-day average │March 1Dec. 21 5. Monterey 1,119.11,119.17-day average │7-day average │March 1Dec. 21 6. Amador 1,073.31,073.37-day average │7-day average │March 1Dec. 21 7. Imperial 1,045.41,045.47-day average │7-day average │March 1Dec. 21 8. Fresno 978.6978.67-day average │7-day average │March 1Dec. 21 9. Los Angeles 972.7972.77-day average │7-day average │March 1Dec. 21 10. Kings 864.9864.97-day average │7-day average │March 1Dec. 21 11. Kern 857.9857.97-day average │7-day average │March 1Dec. 21 12. Sutter 826.1826.17-day average │7-day average │March 1Dec. 21 13. San Benito 774.2774.27-day average │7-day average │March 1Dec. 21 14. Orange 692.6692.67-day average │7-day average │March 1Dec. 21 15. Tulare 670.6670.67-day average │7-day average │March 1Dec. 21 16. Colusa 661.6661.67-day average │7-day average │March 1Dec. 21 17. San Joaquin 6436437-day average │7-day average │March 1Dec. 21 18. Madera 620.6620.67-day average │7-day average │March 1Dec. 21 19. Tehama 605.9605.97-day average │7-day average │March 1Dec. 21 20. Stanislaus 602.3602.37-day average │7-day average │March 1Dec. 21 21. Ventura 599.2599.27-day average │7-day average │March 1Dec. 21 22. Yuba 582.8582.87-day average │7-day average │March 1Dec. 21 23. San Diego 578.1578.17-day average │7-day average │March 1Dec. 21 24. Merced 573.4573.47-day average │7-day average │March 1Dec. 21 25. Inyo 5645647-day average │7-day average │March 1Dec. 21 26. Solano 518.8518.87-day average │7-day average │March 1Dec. 21 27. Mono 5085087-day average │7-day average │March 1Dec. 21 28. Placer 499.1499.17-day average │7-day average │March 1Dec. 21 29. Glenn 491.1491.17-day average │7-day average │March 1Dec. 21 30. Contra Costa 455.2455.27-day average │7-day average │March 1Dec. 21 31. Napa 450.4450.47-day average │7-day average │March 1Dec. 21 32. Butte 437.7437.77-day average │7-day average │March 1Dec. 21 33. Santa Clara 432.8432.87-day average │7-day average │March 1Dec. 21 34. Sacramento 432.4432.47-day average │7-day average │March 1Dec. 21 35. Yolo 419.6419.67-day average │7-day average │March 1Dec. 21 36. Sonoma 399.1399.17-day average │7-day average │March 1Dec. 21 37. Alameda 393.6393.67-day average │7-day average │March 1Dec. 21 38. Del Norte 390.2390.27-day average │7-day average │March 1Dec. 21 39. Santa Cruz 382.4382.47-day average │7-day average │March 1Dec. 21 40. San Mateo 359.7359.77-day average │7-day average │March 1Dec. 21 41. San Luis Obispo 358.1358.17-day average │7-day average │March 1Dec. 21 42. El Dorado 352.5352.57-day average │7-day average │March 1Dec. 21 43. Santa Barbara 347.1347.17-day average │7-day average │March 1Dec. 21 44. Modoc 335.6335.67-day average │7-day average │March 1Dec. 21 45. Plumas 310.2310.27-day average │7-day average │March 1Dec. 21 46. Lake 286.8286.87-day average │7-day average │March 1Dec. 21 47. Mendocino 273.4273.47-day average │7-day average │March 1Dec. 21 48. San Francisco 244.7244.77-day average │7-day average │March 1Dec. 21 49. Nevada 243.2243.27-day average │7-day average │March 1Dec. 21 50. Siskiyou 241.2241.27-day average │7-day average │March 1Dec. 21 51. Marin 203.6203.67-day average │7-day average │March 1Dec. 21 52. Trinity 202.1202.17-day average │7-day average │March 1Dec. 21 53. Shasta 192.1192.17-day average │7-day average │March 1Dec. 21 54. Calaveras 176.9176.97-day average │7-day average │March 1Dec. 21 55. Alpine 174.2174.27-day average │7-day average │March 1Dec. 21 56. Sierra 170.6170.67-day average │7-day average │March 1Dec. 21 57. Humboldt 114.9114.97-day average │7-day average │March 1Dec. 21 58. Mariposa 102.6102.67-day average │7-day average │March 1Dec. 21 Show less The Times' calculation of per capita rates can vary from what's published elsewhere. To learn more about how and why this count sometimes differs from official figures, consult our FAQ. What's open where? See how the governor has rated all 58 counties, and what that means for reopening, in our county reopening tracker. Mapping the toll The coronavirus has been found in all 58 counties, from urban Southern California to the state's rural north. Cumulative totals Metric CasesDeaths Method Per 100kTotals Confirmed cases1k1.9k2.8k3.8k4.9k5.9k9.8k Hover for more information. Los AngelesLos AngelesSan DiegoSan DiegoSacramentoSacramentoSan FranciscoSan FranciscoReddingReddingFresnoFresno Cumulative totals County Cases Per 100k Sunday Deaths Per 100k Sunday Lassen » 3,861 12,381 – 7 22.4 – Imperial » 20,173 11,193.8 – 394 218.6 – Kings » 14,654 9,764.5 +157 104 69.3 +1 San Bernardino » 157,655 7,382.9 – 1,327 62.1 – Kern » 58,200 6,590.8 +995 481 54.5 – Los Angeles » 623,792 6,177.3 +12,885 8,875 87.9 +53 Tulare » 28,130 6,108.9 – 353 76.7 – Merced » 16,026 5,956 – 216 80.3 – Riverside » 141,062 5,918.8 – 1,744 73.2 – Sutter » 5,449 5,683.6 – 43 44.9 – Alpine » 65 5,662 +2 0 0 – Stanislaus » 29,992 5,561.3 +459 523 97 +6 Madera » 8,574 5,531.1 – 111 71.6 – Mono » 772 5,446.6 – 3 21.2 – Amador » 2,043 5,400.6 +100 23 60.8 – Fresno » 52,643 5,382 – 557 56.9 – Monterey » 22,483 5,189.8 – 177 40.9 – San Joaquin » 36,428 4,975.1 – 561 76.6 – Colusa » 1,063 4,952.5 – 8 37.3 – San Benito » 2,907 4,892.6 +53 23 38.7 – Glenn » 1,273 4,563.2 – 12 43 – Tehama » 2,741 4,325.2 – 32 50.5 – Yuba » 3,260 4,318.3 – 15 19.9 – Tuolumne » 2,299 4,262.8 +180 20 37.1 +1 Shasta » 7,121 3,976.3 – 66 36.9 – Orange » 124,428 3,932.4 +4,606 1,775 56.1 +15 San Diego » 126,465 3,829 +3,493 1,280 38.8 – Sacramento » 54,003 3,576.3 – 741 49.1 – Marin » 9,021 3,465.7 +119 136 52.2 – Ventura » 29,358 3,461.6 – 210 24.8 – Solano » 15,008 3,422.3 – 93 21.2 – Sonoma » 16,706 3,332.4 +513 174 34.7 – Santa Barbara » 14,738 3,321.3 +347 147 33.1 – Napa » 4,646 3,306.1 – 23 16.4 – Yolo » 7,019 3,265 +146 104 48.4 – Contra Costa » 34,918 3,081.2 +702 298 26.3 – Modoc » 273 3,054.4 +2 0 0 – San Luis Obispo » 8,460 3,005.8 – 59 21 – Santa Clara » 56,334 2,930.7 +1,429 583 30.3 – Placer » 10,776 2,835.2 – 103 27.1 – Inyo » 490 2,709.4 – 19 105.1 – San Mateo » 20,479 2,673.7 – 198 25.9 – Butte » 5,906 2,600.9 – 78 34.3 – Alameda » 42,655 2,595.1 +628 587 35.7 +2 Mendocino » 2,230 2,550.8 +47 25 28.6 – Santa Cruz » 6,689 2,443.3 – 70 25.6 – El Dorado » 4,412 2,363.6 – 8 4.3 – San Francisco » 20,455 2,351 +303 176 20.2 – Del Norte » 643 2,344.7 – 2 7.3 – Siskiyou » 1,019 2,340.4 – 8 18.4 – Nevada » 2,203 2,223.2 – 39 39.4 – Lake » 1,399 2,180.9 – 21 32.7 – Plumas » 405 2,165.9 – 1 5.3 – Trinity » 251 1,951.5 – 2 15.5 – Calaveras » 722 1,596.1 – 22 48.6 – Mariposa » 196 1,117.4 +8 4 22.8 – Sierra » 32 1,092.2 – 0 0 – Humboldt » 1,387 1,021.6 – 15 11 – Show less Residents of cities, neighborhoods and regions all across the state have contracted the coronavirus. Here are the latest tallies for 1,320 places as released by county health departments. Confirmed cases 100 1,000 10,000 Counties that do not report cases by locality © Mapbox © OpenStreetMap Improve this map The following counties currently do not report cases by locality: Alpine, Colusa, Glenn, Mariposa, Modoc, San Benito, Sierra, Tehama and Tuolumne Filter by countyAlameda Amador Butte Calaveras Contra Costa Del Norte El Dorado Fresno Humboldt Imperial Inyo Kern Kings Lake Lassen Los Angeles Madera Marin Mendocino Merced Mono Monterey Napa Nevada Orange Placer Plumas Riverside Sacramento San Bernardino San Diego San Francisco San Joaquin San Luis Obispo San Mateo Santa Barbara Santa Clara Santa Cruz Shasta Siskiyou Solano Sonoma Stanislaus Sutter Trinity Tulare Ventura Yolo Yuba Search by name Area Confirmed cases East Los Angeles 13,896 Pomona 13,553 Palmdale 12,500 Lancaster 11,296 North Hollywood 10,268 South Gate 9,723 Santa Clarita 9,540 Downey 9,375 El Monte 9,345 Boyle Heights 9,293 Glendale 9,143 Pacoima 9,056 Compton 8,623 Sylmar 8,216 Norwalk 7,928 Van Nuys 7,736 Unincorporated - Florence-Firestone 7,443 Lynwood 7,038 Panorama City 6,949 Baldwin Park 6,623 West Covina 6,616 Inglewood 6,471 90805: Long Beach 6,239 Huntington Park 6,057 Vernon Central 5,980 Pico Rivera 5,976 Whittier 5,814 Reseda 5,801 Pasadena 5,619 Montebello 5,466 Bellflower 5,310 West Vernon 5,210 Paramount 5,152 Florence-Firestone 4,995 Hawthorne 4,806 North Hills 4,744 Canoga Park 4,624 Sun Valley 4,545 Bell Gardens 4,484 South Whittier 4,483 Westlake 4,277 Carson 4,268 Central 4,132 Burbank 4,125 Melrose 4,119 Wilmington 4,079 South Park 4,072 Watts 4,015 Vermont Vista 3,932 Wholesale District 3,898 90813: Long Beach 3,833 Northridge 3,647 Pico-Union 3,644 La Puente 3,600 San Pedro 3,596 Arleta 3,556 Harvard Park 3,536 Bell 3,420 Azusa 3,356 Winnetka 3,275 Covina 3,257 Lakewood 3,255 Alhambra 3,210 Granada Hills 3,182 El Sereno 3,176 Century Palms/Cove 3,165 Athens-Westmont 3,134 Exposition Park 3,113 Willowbrook 3,103 Torrance 3,102 Gardena 2,955 Maywood 2,858 Highland Park 2,808 Hollywood 2,807 90806: Long Beach 2,803 Sherman Oaks 2,751 Lake Balboa 2,713 Castaic 2,696 Temple-Beaudry 2,631 San Fernando 2,603 Hacienda Heights 2,601 Lincoln Heights 2,596 Wilshire Center 2,548 Koreatown 2,510 Glendora 2,494 Cudahy 2,463 West Whittier/Los Nietos 2,334 Woodland Hills 2,332 Harbor Gateway 2,306 90810: Long Beach 2,275 Monterey Park 2,269 Rosemead 2,248 Mission Hills 2,229 Santa Monica 2,222 90804: Long Beach 2,130 La Mirada 2,108 90802: Long Beach 2,012 Downtown 1,982 West Adams 1,975 University Park 1,959 Green Meadows 1,949 Valley Glen 1,943 Valinda 1,903 San Jose Hills 1,869 South El Monte 1,855 Chatsworth 1,823 Eagle Rock 1,794 Hyde Park 1,740 Rowland Heights 1,724 Encino 1,698 Tarzana 1,670 Altadena 1,630 Lennox 1,624 Lawndale 1,621 Silver Lake 1,619 Monrovia 1,598 Glassell Park 1,592 Walnut Park 1,560 San Gabriel 1,543 Diamond Bar 1,527 East Hollywood 1,511 Vermont Knolls 1,510 San Dimas 1,497 West Hills 1,417 East Rancho Dominguez 1,405 Santa Fe Springs 1,392 La Verne 1,377 Mt. Washington 1,373 90815: Long Beach 1,365 Beverly Hills 1,361 Baldwin Hills 1,356 Commerce 1,355 Bassett 1,352 Cerritos 1,316 Redondo Beach 1,315 90807: Long Beach 1,288 Arcadia 1,269 Tujunga 1,263 West Hollywood 1,237 Unincorporated - Azusa 1,224 Harvard Heights 1,222 Lakeview Terrace 1,210 Temple City 1,206 Little Bangladesh 1,202 90808: Long Beach 1,187 Palms 1,174 West Los Angeles 1,170 Westwood 1,166 Harbor City 1,152 Duarte 1,151 Porter Ranch 1,151 Hawaiian Gardens 1,150 Unincorporated - Covina 1,149 Claremont 1,118 Sunland 1,104 Westchester 1,062 Valley Village 1,054 Del Rey 1,052 Historic Filipinotown 1,024 Culver City 1,020 90803: Long Beach 960 West Carson 950 Artesia 934 West Puente Valley 929 Mar Vista 896 Northeast San Gabriel 849 Venice 830 Walnut 828 Alsace 807 Hollywood Hills 804 Country Club Park 781 Lake Los Angeles 779 Covina (Charter Oak) 776 Cloverdale/Cochran 773 Leimert Park 762 Brentwood 748 Crenshaw District 745 Vermont Square 742 Figueroa Park Square 739 Studio City 693 Manhattan Beach 685 Echo Park 664 90814: Long Beach 660 South Pasadena 653 Rancho Palos Verdes 638 Atwater Village 629 Gramercy Place 623 Little Armenia 619 Elysian Valley 615 Jefferson Park 606 Adams-Normandie 601 Mid-city 594 Calabasas 589 Avocado Heights 583 Signal Hill 580 Athens Village 579 Quartz Hill 577 Lomita 560 North Whittier 540 Carthay 527 Los Feliz 524 Victoria Park 522 Hancock Park 509 Hermosa Beach 506 Stevenson Ranch 484 Crestview 480 La Crescenta-Montrose 479 Unincorporated - Duarte 477 Agoura Hills 476 South San Gabriel 459 Sun Village 455 Miracle Mile 450 Manchester Square 442 Thai Town 421 Beverlywood 414 Canyon Country 402 La Canada Flintridge 378 Chinatown 374 El Camino Village 371 Pacific Palisades 354 View Park/Windsor Hills 352 Cadillac-Corning 351 South Carthay 336 Beverly Crest 329 Reseda Ranch 319 St Elmo Village 312 El Segundo 311 Century City 295 Longwood 286 Playa Vista 285 Park La Brea 284 Wellington Square 280 Lafayette Square 269 Elysian Park 268 Littlerock 261 Santa Monica Mountains 261 Wiseburn 260 Toluca Lake 257 East La Mirada 253 Unincorporated - Arcadia 253 Rosewood/West Rancho Dominguez 246 Sierra Madre 246 Littlerock/Pearblossom 238 East Whittier 216 Acton 211 Cheviot Hills 207 Little Tokyo 197 Malibu 190 Shadow Hills 190 San Marino 189 Marina del Rey 187 Unincorporated - Monrovia 187 Ladera Heights 185 Palos Verdes Estates 185 Bel Air 182 Exposition 181 Unincorporated - South El Monte 181 Desert View Highlands 180 Rancho Dominguez 175 Rancho Park 170 Irwindale 155 Unincorporated - Whittier 152 Del Aire 151 White Fence Farms 150 Unincorporated - Hawthorne 149 Val Verde 148 Angelino Heights 147 East Pasadena 129 University Hills 129 La Rambla 123 Rolling Hills Estates 119 Sunrise Village 119 Reynier Village 115 Unincorporated - West LA 113 View Heights 110 Regent Square 105 Agua Dulce 102 Kagel/Lopez Canyons 100 Unincorporated - La Verne 91 Valencia 90 Faircrest Heights 89 Industry 89 La Habra Heights 88 Pellissier Village 83 Harbor Pines 80 West Rancho Dominguez 79 Marina Peninsula 77 North Lancaster 77 Rosewood/East Gardena 77 Santa Catalina Island 77 Anaverde 75 Del Sur 75 Palisades Highlands 73 Mandeville Canyon 69 Westlake Village 69 Rosewood 65 Lake Manor 62 Saugus 62 Toluca Terrace 60 Toluca Woods 60 Playa Del Rey 57 Littlerock/Juniper Hills 56 Leona Valley 53 Newhall 51 Pearblossom/Llano 50 Roosevelt 45 Unincorporated - Palmdale 45 Vernon 45 Southeast Antelope Valley 44 Twin Lakes/Oat Mountain 43 Unincorporated - Cerritos 39 Unincorporated - Glendora 37 Unincorporated - Pomona 37 Bradbury 32 Hidden Hills 32 Unincorporated - Claremont 31 Elizabeth Lake 29 Westhills 26 Llano 22 Hi Vista 21 Saugus/Canyon Country 21 Bouquet Canyon 20 San Pasqual 20 Lake Hughes 18 Rolling Hills 18 Westfield/Academy Hills 18 West Antelope Valley 17 Sycamore Square 16 East Covina 15 Unincorporated - Del Rey 14 Brookside 13 Palos Verdes Peninsula 13 South Antelope Valley 11 Unincorporated - Angeles National Forest 11 Unincorporated - El Monte 11 Unincorporated - La Habra Heights 11 Unincorporated - Bradbury 10 Sand Canyon 8 Padua Hills 6 Avalon 5 East Lancaster 5 Whittier Narrows 5 San Francisquito Canyon/Bouquet Canyon 4 Angeles National Forest 2 West Chatsworth 1 Show less Hospitals and patients Stay-at-home orders aim to slow the virus in hope of preventing hospitals from being overrun. To keep tabs on available beds, officials watch out for rapid increases in the number of patients. There are now 16,843 hospital patients statewide with a confirmed case, a change of 73% from two weeks ago. ConfirmedSuspectedBoth Intensive care and other hospitalized patients AprilJuneAug.Oct.Dec.02,0004,0006,0008,00010,00012,00014,00016,00018,000 California Department of Public Health Confirmed patients County ICU Other Total Los Angeles » 1,175 4,534 5,709 Orange » 375 1,307 1,682 San Bernardino » 299 1,209 1,508 San Diego » 316 895 1,211 Riverside » 235 943 1,178 Santa Clara » 134 458 592 Fresno » 109 466 575 Sacramento » 110 367 477 Alameda » 100 259 359 Stanislaus » 64 279 343 San Joaquin » 80 258 338 Kern » 72 259 331 Ventura » 71 194 265 Contra Costa » 59 169 228 Imperial » 40 159 199 Placer » 29 160 189 Tulare » 23 161 184 Monterey » 30 141 171 San Francisco » 39 125 164 San Mateo » 26 110 136 Solano » 32 82 114 Santa Barbara » 23 82 105 Kings » 8 84 92 Butte » 17 73 90 Sonoma » 17 54 71 Merced » 17 44 61 Shasta » 8 52 60 Santa Cruz » 14 45 59 Yuba » 12 45 57 Madera » 9 31 40 San Luis Obispo » 10 30 40 Yolo » 12 11 23 Marin » 9 13 22 El Dorado » 8 13 21 Napa » 6 13 19 Nevada » 4 13 17 San Benito » 3 9 12 Amador » 1 10 11 Tuolumne » 0 10 10 Inyo » 0 10 10 Lake » 3 7 10 Tehama » 2 7 9 Mendocino » 3 5 8 Siskiyou » 2 6 8 Humboldt » 3 4 7 Colusa » 0 6 6 Lassen » 0 5 5 Glenn » 0 5 5 Plumas » 0 5 5 Calaveras » 3 2 5 Del Norte » 2 0 2 Sutter » 0 0 0 Mono » 0 0 0 Modoc » 0 0 0 Trinity » 0 0 0 Mariposa » 0 0 0 Show less Officials also closely monitor the number of beds open in intensive-care units. The latest data show that there are 1,353 available statewide. Available ICU beds Aug.Sept.Oct.Nov.Dec.05001,0001,5002,0002,5003,0003,5001,353Dec. 19 California Department of Public Health Officials have organized the state’s counties into five regions. If a region’s available percentage of intensive-care beds falls below 15%, a stay-at-home order is issued. Three regions currently fail. Available ICU beds by region 01530Dec.3Dec.19Bay AreaBay Area12.2%12.2% Greater SacramentoGreater Sacramento15.0%15.0% Northern CaliforniaNorthern California22.4%22.4% San Joaquin ValleySan Joaquin Valley0.0%0.0% Southern CaliforniaSouthern California0.0%0.0% Vaccines California officials have begun to distribute the state’s first batch of coronavirus vaccine. The initial shipments are expected to add up to about 1.2 million doses and are being administered to healthcare workers who face the greatest exposure to the virus and residents of long-term care facilities, such as nursing homes. The state has yet to release figures on how many people have been vaccinated so far. Officials are still drafting a plan on how to roll out the shot beyond the initial group. It is unclear when essential workers and other Californians will have access. Phase 1 Healthcare workers and long-term care residents Doctors and nurses on the front lines are now receiving shots. Other healthcare workers and nursing homes come next in this step. Phase 2 Essential workers Emergency personnel, teachers and farmworkers are expected to be next in line. There is no start date. Who else will qualify is undecided. Phase 3 Everyone else It’s unclear how long the rest of California’s nearly 40 million residents may wait. Experts say shots may be readily available by late spring or summer. Testing After a fitful start, California has increased coronavirus testing in the state. Over the last week, an average of 318,017 tests have been conducted each day. New tests by day MayJulySept.Nov.0100,000200,000300,000400,0007-dayaverage7-dayaverage California Department of Public Health In the last seven days, about 12.9% of the 2,226,119 tests conducted have returned a positive result. Positive test rate, seven-day average MayJulySept.Nov.0%5%10%15%12.9%Dec. 19 California Department of Public Health Wide disparities in age and race While younger adults make up the majority of positive tests, deaths due to the virus have skewed heavily toward the elderly. Percentage of cases vs. population 0%10%20%30%40%50%80+75-7970-7465-6960-6450-5935-4918-345-170-4 Percentage of deaths vs. population 0%10%20%30%40%50%80+75-7970-7465-6960-6450-5935-4918-345-170-4 There are 1237 cases with an unreported age. California Department of Public Health The state has logged the race of the patient in nearly two-thirds of cases. Latinos and Black people have contracted the virus at a higher rate than white and Asian people. After adjusting for population, Latinos are now 2.7 times more likely to test positive than white people. Cumulative cases by race per 100,000 people JuneAug.Oct.Dec.01,0002,0003,0004,000AsianAsianBlackBlackLatino4,506 casesper 100,000Latino4,506 casesper 100,000OtherOtherWhiteWhite The other category includes Native Americans and people of two or more races. California Department of Public Health One outcome is that among most age groups, and especially younger people, Black people and Latinos are dying more often than other races relative to their share of the population. Percentage of deaths vs. population Age: All 18+ 0-17 18-34 35-49 50-64 65-79 80+ CasesDeaths 0%20%40%60%80%BlackAsianWhiteLatino Race Deaths Deaths Pct. Population Pct. Latino 10,307 47.9% 36.3% White 6,642 30.9% 38.8% Asian 2,600 12.1% 16.5% Black 1,534 7.1% 6.1% Note: There are 309 deaths with an unknown race in this age bracket, 1% of the total. Lives lost to COVID-19 Learn more about those we've lost by reading Times obituaries of Californians who have died from coronavirus. Nursing homes Nursing homes are a tragic focal point of the outbreak. Residents and staff have accounted for 5% the state's coronavirus cases, but 34% of its deaths. CasesDeaths Deaths at nursing homes vs. elsewhere JuneAug.Oct.Dec.05,00010,00015,00020,000 California Department of Public Health Track outbreaks in California nursing homes Follow the data and look up the latest tallies at the hundreds of skilled-nursing and assisted-living facilities across the state. California in context To date, the United States has recorded 17,642,958 coronavirus cases and 316,028 deaths. In the last week, the country has averaged 215,612 new cases and 2,607 deaths per day. While California — America’s most populous state — has the nation’s top case counts, it ranks much lower after adjusting for population. Home to 12% of the country's population, thus far it has accounted for roughly 11% of cases. New cases in California vs. the rest of the country MarchMayJulySept.Nov.050,000100,000150,000200,000250,000 Johns Hopkins University CSSE, Times survey State Cases Per 100k Last 14 days Per 100k New cases FewerMore California 1,839,294 4,698.2 508,570 1,299.1 Mar 1Dec 19 Texas 1,584,207 5,681.2 210,853 756.1 Ohio 614,429 5,277.7 146,997 1,262.7 Florida 1,193,165 5,792.6 143,527 696.8 New York 838,085 4,271.9 142,138 724.5 Pennsylvania 552,895 4,322.5 137,260 1,073.1 Illinois 894,367 6,975.5 114,392 892.2 Tennessee 503,651 7,572.5 106,129 1,595.7 Arizona 448,231 6,452.4 89,331 1,286 North Carolina 472,268 4,650.3 83,716 824.3 Georgia 582,300 5,654.8 82,929 805.3 Indiana 457,871 6,898.3 82,852 1,248.3 Michigan 496,056 4,981.7 69,480 697.8 Massachusetts 319,270 4,674.4 67,253 984.6 New Jersey 427,417 4,812.3 65,431 736.7 Wisconsin 490,679 8,491.6 52,761 913.1 Alabama 319,904 6,576.1 52,315 1,075.4 Virginia 302,972 3,600.9 51,799 615.6 Minnesota 394,635 7,139.7 49,354 892.9 Colorado 306,598 5,543.1 49,251 890.4 Missouri 372,541 6,117.2 46,953 771 Oklahoma 255,868 6,530.3 42,623 1,087.8 Kentucky 240,563 5,417.8 42,499 957.1 South Carolina 270,537 5,458.9 41,302 833.4 Washington 222,600 3,051.7 39,519 541.8 Maryland 248,754 4,143.5 36,370 605.8 Nevada 201,858 6,906.2 36,230 1,239.5 Utah 248,970 8,175.4 36,126 1,186.3 Louisiana 282,434 6,056.1 35,257 756 Connecticut 162,782 4,545.1 35,067 979.1 Kansas 203,649 7,001.2 32,286 1,110 Arkansas 200,114 6,691.3 30,732 1,027.6 Mississippi 192,111 6,427.8 28,653 958.7 Iowa 266,959 8,522.2 23,574 752.6 New Mexico 128,930 6,161.7 22,074 1,054.9 Idaho 129,069 7,647.1 19,364 1,147.3 Oregon 101,814 2,494.3 18,571 455 West Virginia 71,215 3,893.5 17,643 964.6 Nebraska 155,415 8,159.3 16,847 884.5 Rhode Island 77,812 7,364.3 15,675 1,483.5 Puerto Rico 67,211 1,984.4 11,679 344.8 New Hampshire 35,609 2,650.2 11,471 853.7 Delaware 50,136 5,280.3 11,040 1,162.7 Montana 76,619 7,355 9,550 916.7 South Dakota 94,336 10,914.9 9,032 1,045 Alaska 43,688 5,915.6 7,417 1,004.3 North Dakota 89,784 11,936.2 7,280 967.8 Maine 18,738 1,405.9 5,611 421 Wyoming 41,488 7,130.5 5,547 953.4 District of Columbia 26,342 3,848.4 3,470 506.9 Hawaii 20,375 1,432.8 1,637 115.1 Vermont 6,343 1,014.9 1,449 231.8 Show less The same is true for deaths. So far, California has accounted for 7% of deaths nationwide. It still trails far behind New York, where deaths surged in the early days of the pandemic. New deaths in California vs. the rest of the country MarchMayJulySept.Nov.01,0002,0003,0004,000 Johns Hopkins University CSSE, Times survey State Deaths Per 100k Last 14 days Per 100k New deaths FewerMore California 22,598 57.7 2,717 6.9 Mar 1Dec 19 Texas 25,714 92.2 2,604 9.3 Pennsylvania 13,754 107.5 2,563 20 Illinois 16,326 127.3 2,310 18 Michigan 12,074 121.3 1,753 17.6 Florida 20,473 99.4 1,389 6.7 New York 36,318 185.1 1,379 7 Indiana 7,338 110.6 1,131 17 Ohio 8,031 69 1,085 9.3 Tennessee 5,960 89.6 1,055 15.9 Arizona 7,937 114.3 1,012 14.6 Colorado 4,339 78.4 982 17.8 New Jersey 18,173 204.6 867 9.8 Minnesota 4,839 87.5 860 15.6 Iowa 3,532 112.8 850 27.1 Wisconsin 4,722 81.7 788 13.6 Missouri 5,048 82.9 772 12.7 Massachusetts 11,657 170.7 704 10.3 North Carolina 6,184 60.9 668 6.6 Maryland 5,412 90.1 592 9.9 Georgia 10,381 100.8 588 5.7 Arkansas 3,191 106.7 571 19.1 Kansas 2,341 80.5 555 19.1 Alabama 4,389 90.2 512 10.5 Nevada 2,749 94.1 448 15.3 Virginia 4,643 55.2 446 5.3 Louisiana 6,994 150 446 9.6 Mississippi 4,390 146.9 441 14.8 Connecticut 5,581 155.8 435 12.1 New Mexico 2,155 103 417 19.9 South Carolina 4,895 98.8 378 7.6 Oklahoma 2,189 55.9 315 8 Oregon 1,340 32.8 313 7.7 Kentucky 2,371 53.4 309 7 West Virginia 1,122 61.3 293 16 Nebraska 1,475 77.4 281 14.8 South Dakota 1,350 156.2 259 30 Idaho 1,275 75.5 243 14.4 Washington 3,104 42.6 237 3.2 North Dakota 1,231 163.7 218 29 Rhode Island 1,625 153.8 212 20.1 Utah 1,148 37.7 209 6.9 Puerto Rico 1,342 39.6 157 4.6 Montana 864 82.9 130 12.5 New Hampshire 650 48.4 91 6.8 Wyoming 351 60.3 85 14.6 Delaware 858 90.4 76 8 Maine 292 21.9 65 4.9 Alaska 184 24.9 41 5.6 District of Columbia 730 106.6 35 5.1 Vermont 108 17.3 29 4.6 Hawaii 281 19.8 20 1.4 Show less Tracking the coronavirus California counties Alameda Alpine Amador Butte Calaveras Colusa Contra Costa Del Norte El Dorado Fresno Glenn Humboldt Imperial Inyo Kern Kings Lake Lassen Los Angeles Madera Marin Mariposa Mendocino Merced Modoc Mono Monterey Napa Nevada Orange Placer Plumas Riverside Sacramento San Benito San Bernardino San Diego San Francisco San Joaquin San Luis Obispo San Mateo Santa Barbara Santa Clara Santa Cruz Shasta Sierra Siskiyou Solano Sonoma Stanislaus Sutter Tehama Trinity Tulare Tuolumne Ventura Yolo Yuba Other trackers Housing homeless people Nursing homes State prisons Following the curve Unemployment and economic fallout Which counties are open Which beaches are closed Lives lost Frequently asked questions More coverage Coronavirus symptoms How coronavirus spreads Get our newsletter About the numbers This page was created by Swetha Kannan, Casey Miller, Sean Greene, Lorena Iñiguez Elebee, Rong-Gong Lin II, Ryan Murphy, Melody Gutierrez, Priya Krishnakumar, Sandhya Kambhampati, Maloy Moore, Jennifer Lu, Aida Ylanan, Vanessa Martínez, Ryan Menezes, Thomas Suh Lauder, Andrea Roberson, Ben Poston, Nicole Santa Cruz, Iris Lee, Rahul Mukherjee, Jaclyn Cosgrove, Anthony Pesce, Paul Duginski and Phi Do. State and county totals come from an ongoing Times survey of California’s 58 county health agencies as well as the three run by cities. Those figures are ahead of the totals periodically released by the state’s Department of Public Health. State officials acknowledge that their tallies lag behind the updates posted by local agencies throughout the day and do not dispute The Times’ method. Data on hospitalizations, tests, demographics and reopening plans come from the state health department. Nursing home totals include skilled-nursing facilities tracked by the state public health department, as well as assisted-living facilities monitored by the California Department of Social Services. Data from other states, Washington, D.C. and Puerto Rico are collected by researchers at the Johns Hopkins University Center for Systems Science and Engineering. Counties are organized into regions using the groupings developed by the state health department. The Times database is available to the public on Github, a popular website for hosting data and computer code. The files will be updated daily at github.com/datadesk/california-coronavirus-data. The data collection effort is done in partnership with journalists at the San Francisco Chronicle, the San Diego Union-Tribune, KQED, KPCC, CapRadio, Calmatters and Stanford’s Big Local News. Learn more about The Times count by reading this list of frequently asked questions or by reading this interview with members of our team. If you see information here that you believe is incorrect or out of date, please contact Data and Graphics Editor Ben Welsh at [email protected]. Change log Dec. 14 New charts were added ranking the rate of new cases in the state’s five regions over the last seven days. Dec. 12 New charts were added plotting the ICU capacity in the state’s five region over time. Dec. 3 The state’s new ICU availability metric were added to county reopening profiles. Nov. 13 A chart tracking changes in tier assignments was added to the reopenings tracker. Nov. 9 Per-capita totals for city-level data added to some county pages. Oct. 19 Maps were added for case counts in Del Norte, Lake, Siskiyou, Trinity counties. Oct. 17 The hotspots section now offers a ranking of counties by the total number of cases and deaths in the past week. Oct. 9 Charts plotting the daily trend in cities and regions added to most county pages. Oct. 4 Charts plotting how each area stacks up against the state’s reopening benchmarks added to county pages. Oct. 1 City-level totals added for Shasta County. Sept. 27 Totals for skilled-nursing facilities are now drawn from the state's open data portal, which is promoted as the most comprehensive and up-to-date source. Sept. 26 The hotspots section now offers a ranking of counties by deaths per 100,000 residents over the last seven days. Sept. 22 Nursing home lists moved to a new page focused on skilled-nursing and assisted-living facilities. Sept. 13 The logarithmic curves plotting the rate of growth in each state were replaced. Instead, stacked-bar charts compare California's case and death counts against the rest of the nation. Sept. 12 The county map is now exclusively focused on cumulative totals and starts off by displaying grand totals per 100,000 residents. Sept. 11 The logarithmic curves plotting the rate of growth in each county were replaced. Instead, after adjusting for population, counties are now ranked by the number new cases announced in the past week. The reopening map has been removed and can be found by visiting our more complete county reopening tracker.