niman

New Tests Administered 46,249 06/22/2020 ... 12/22/2020 11,875 New Individuals Tested New Positive Cases 4,731 10/26/2020 ... 12/22/2020 Positivity - All Tests 12.1 %7-Day Rate 12/10/2020 ... 12/16/2020 8.0 % cumulative rate New Deaths 62 08/19/2020 ... 12/22/2020 Total Confirmed COVID-19 Counts Total Tests Administered 5,376,575 02/26/2020 ... 12/22/2020 2,556,493 Individuals Tested Total Positive Cases 476,538 03/06/2020 ... 12/22/2020 Positivity - Unique Individuals 24 %7-Day Rate 12/10/2020 ... 12/16/2020 18.6 % cumulative rate Total Deaths 7,306 03/15/2020 ... 12/22/2020 https://www.coronavirus.in.gov/

583,118 Confirmed Cases 61,704 CDC Expanded Case Definition (Probable) 644,822 Total Cases 36,025 Number of Hospitalizations in Ohio 7,613 Confirmed Deaths 748 CDC Expanded Death Definition (Probable) 8,361 Total Deaths 5,640 Number of ICU Admissions <1-111 Age Range 43 Median Age 46%* Sex - Males 53%* Sex - Females https://coronavirus.ohio.gov/wps/portal/gov/covid-19/home

Number of confirmed cases : 257,862 Number of persons tested negative : 2,447,078 Total testing volume : 5,419,999 Daily testing volume : 39,814 Number of confirmed deaths : 5,402 Number of probable deaths : 166 Currently hospitalized : 1,776 Acute care : 1,357 Intensive care : 419 Ever hospitalized : 25,072 Released from isolation : 9,197 Cases and Deaths Data Breakdown: Parenthesis = Confirmed death, laboratory-confirmed positive COVID-19 test result Asterisk = Probable death, death certificate lists COVID-19 as the cause of death but not yet confirmed by a laboratory test NH = Non-Hispanic By County County Cases Deaths Allegany 5,172 (146) Anne Arundel 22,366 (329) 13* Baltimore City 30,080 (656) 21* Baltimore County 36,582 (860) 29* Calvert 2,055 (44) 1* Caroline 1,232 (10) Carroll 4,763 (155) 4* Cecil 3,270 (65) 2* Charles 5,664 (116) 1* Dorchester 1,290 (18) Frederick 10,065 (163) 8* Garrett 1,339 (37) Harford 7,979 (135) 4* Howard 10,463 (167) 6* Kent 664 (24) 2* Montgomery 42,975 (1,032) 44* Prince George's 51,462 (1,019) 27* Queen Anne's 1,495 (26) 1* St. Mary's 2,982 (82) Somerset 1,630 (19) Talbot 1,055 (7) Washington 7,024 (127) 2* Wicomico 4,319 (73) Worcester 1,936 (43) 1* Data not available (49) By Age Range and Gender Age/Gender Cases Deaths 0-9 11,525 (1) 10-19 23,227 (4) 20-29 48,027 (27) 1* 30-39 45,591 (60) 6* 40-49 40,125 (162) 4* 50-59 38,507 (420) 20* 60-69 25,684 (841) 17* 70-79 14,824 (1,362) 30* 80+ 10,352 (2,523) 88* Data not available (2) Female 135,488 (2,628) 81* Male 122,374 (2,774) 85* By Race and Ethnicity Race/Ethnicity Cases Deaths African-American (NH) 75,524 (2,020) 60* Asian (NH) 5,275 (180) 7* White (NH) 82,179 (2,556) 83* Hispanic 45,643 (538) 14* Other (NH) 11,817 (55) Data not available 37,424 (53) 2* https://coronavirus.maryland.gov/

Middlesex County 511 New Positives 1,404 Confirmed Deaths 41,673 Positive Test Results 213 Probable Deaths Passaic County 488 New Positives 1,269 Confirmed Deaths 38,270 Positive Test Results 149 Probable Deaths Bergen County 474 New Positives 2,007 Confirmed Deaths 44,166 Positive Test Results 260 Probable Deaths Hudson County 422 New Positives 1,505 Confirmed Deaths 40,822 Positive Test Results 163 Probable Deaths Essex County 384 New Positives 2,111 Confirmed Deaths 44,669 Positive Test Results 242 Probable Deaths Monmouth County 356 New Positives 890 Confirmed Deaths 29,070 Positive Test Results 100 Probable Deaths Ocean County 306 New Positives 1,217 Confirmed Deaths 29,589 Positive Test Results 75 Probable Deaths Camden County 278 New Positives 712 Confirmed Deaths 26,533 Positive Test Results 58 Probable Deaths Morris County 271 New Positives 767 Confirmed Deaths 18,764 Positive Test Results 175 Probable Deaths Burlington County 266 New Positives 558 Confirmed Deaths 19,213 Positive Test Results 45 Probable Deaths Union County 229 New Positives 1,346 Confirmed Deaths 34,897 Positive Test Results 174 Probable Deaths Gloucester County 176 New Positives 342 Confirmed Deaths 13,006 Positive Test Results 10 Probable Deaths Mercer County 155 New Positives 670 Confirmed Deaths 17,790 Positive Test Results 37 Probable Deaths Atlantic County 120 New Positives 327 Confirmed Deaths 11,080 Positive Test Results 18 Probable Deaths Cumberland County 101 New Positives 198 Confirmed Deaths 7,126 Positive Test Results 9 Probable Deaths Somerset County 86 New Positives 565 Confirmed Deaths 11,752 Positive Test Results 87 Probable Deaths Sussex County 84 New Positives 167 Confirmed Deaths 3,960 Positive Test Results 43 Probable Deaths Salem County 58 New Positives 102 Confirmed Deaths 2,488 Positive Test Results 5 Probable Deaths Warren County 42 New Positives 167 Confirmed Deaths 3,551 Positive Test Results 13 Probable Deaths Hunterdon County 39 New Positives 82 Confirmed Deaths 3,442 Positive Test Results 54 Probable Deaths Cape May County 18 New Positives 115 Confirmed Deaths 2,200 Positive Test Results 15 Probable Deaths https://www.nj.gov/health/cd/topics/covid2019_dashboard.shtml

Total Cases 918,070 Confirmed Deaths 15,547 Probable Deaths 1,295 Total Tests Performed* 12,688,071 Recovery Rate** 98% *Total molecular and antigen tests performed and reported electronically for testing of COVID-19 at IDPH, commercial or hospital laboratories. All numbers displayed are provisional and will change. ** Recovered cases are defined as persons with initial positive specimen collection date > 42 days who have not expired. http://www.dph.illinois.gov/covid19#tab-0-0 Recovery rate is calculated as the recovered cases divided by the sum of recovered cases and deceased cases. Information regarding the number of persons under investigation updated on 12/23/2020. Information to be updated daily.

https://covid19.ncdhhs.gov/dashboard/cases

https://www.vdh.virginia.gov/coronavirus/covid-19-in-virginia/

https://www.health.pa.gov/topics/disease/coronavirus/Pages/Cases.aspx#

https://www.azdhs.gov/preparedness/epidemiology-disease-control/infectious-disease-epidemiology/covid-19/dashboards/index.php

CASES 334,569 TOTAL 271,500 CONFIRMED 63,069 PROBABLE LAST 14 DAYS 55,248 CASES 143,400 TESTED (DIAGNOSTIC) *TOTAL HOSPITALIZATIONS To Date Updates M-F at 3 p.m. 31,305 STATEWIDE DEATHS 4,587 TOTAL 4,023 CONFIRMED 564 PROBABLE TOTAL TESTED 1,813,351 DIAGNOSTIC 83,461 ANTIBODY PRESUMED RECOVERIES Updated Weekly 183,625 STATEWIDE https://alpublichealth.maps.arcgis.com/apps/opsdashboard/index.html#/6d2771faa9da4a2786a509d82c8cf0f7

LOCUS MW286605 29806 bp RNA linear VRL 23-NOV-2020 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/FL-BPHL-2075/2020, complete genome. ACCESSION MW286605 VERSION MW286605.1 KEYWORDS . SOURCE Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ORGANISM Severe acute respiratory syndrome coronavirus 2 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus. REFERENCE 1 (bases 1 to 29806) AUTHORS Schmedes,S. and Blanton,J. TITLE Direct Submission JOURNAL Submitted (23-NOV-2020) BPHL, FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA COMMENT ##Assembly-Data-START## Assembly Method :: bwa v. 0.7.17; ivar v. 1.2.2 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..29806 /organism="Severe acute respiratory syndrome coronavirus 2" /mol_type="genomic RNA" /isolate="SARS-CoV-2/human/USA/FL-BPHL-2075/2020" /host="Homo sapiens" /db_xref="taxon:2697049" /country="USA: FL" /collection_date="2020-07-03"

Recent reports of a variant from South Africa suggests it transmits more easily than the UK variant. Both usually have 3 amino acids deleted from the Spike protein as well as RBD mutation N501Y and G clade mutation D614G. The Spike deletion in South Africa (L242 A243 L244) is also in a recently deposited (at GISAID and Genbank) isolate collected on July 3 in Florida, USA/FL-BPHL-2075. This isolate only has one additional Spike non-synonymous change, D614G

SINGAPORE: Singapore reported 21 new COVID-19 cases on Wednesday (Dec 23), the Ministry of Health (MOH) said. All the new cases were imported and were placed on stay-home notice upon arrival in Singapore. MOH also confirmed that a COVID-19 case reported on Dec 8 was found to carry the coronavirus strain circulating in the United Kingdom. "In light of recent reports that the B117 strain, a potentially more contagious strain of the COVID-19 virus, is circulating in the UK, the National Public Health Laboratory is performing viral genomic sequencing for confirmed COVID-19 cases who had arrived from Europe recently," said MOH. The case, known as Case 58504, is a 17-year-old female who had been studying in the UK from August. She returned to Singapore on Dec 6 and served her stay-home notice at a dedicated facility upon arrival. Advertisement Sponsored by GlaxoSmithKline Pte Ltd Not the end of the road Experts say current treatment options can help persons living with HIV effectively manage the disease with minimal side effects. SEE MORE data:image/svg+xml;base64,PD94bWwgdmVyc2lvbj0iMS4wIiBlbmNvZGluZz0iVVRGLTgiPz4KPHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHhtbG5zOnhsaW5rPSJodHRwOi8vd3d3LnczLm9yZy8xOTk5L3hsaW5rIiB3aWR0aD0iMTVweCIgaGVpZ2h0PSIxNXB4IiB2aWV3Qm94PSIwIDAgMTUgMTUiIHZlcnNpb249IjEuMSI+CjxnIGlkPSJzdXJmYWNlMSI+CjxwYXRoIHN0eWxlPSIgc3Ryb2tlOm5vbmU7ZmlsbC1ydWxlOmV2ZW5vZGQ7ZmlsbDpyZ2IoOS44MDM5MjIlLDY3LjA1ODgyNCUsODAlKTtmaWxsLW9wYWNpdHk6MTsiIGQ9Ik0gMC45NzY1NjIgMC4wMTk1MzEyIEMgMC4yMTA5MzggMC4yMDMxMjUgLTAuMDM5MDYyNSAxLjA4MjAzMSAwLjAyMzQzNzUgMS43NzczNDQgQyAtMC4wMjczNDM4IDQuNjc5Njg4IDAuMDE5NTMxMiA3LjU4MjAzMSAwIDEwLjQ4NDM3NSBDIDAuMDIzNDM3NSAxMS42NTYyNSAtMC4wMzkwNjI1IDEyLjgzMjAzMSAwLjA3ODEyNSAxNCBDIDAuMTUyMzQ0IDE0Ljg1MTU2MiAxLjAzMTI1IDE1LjE0ODQzOCAxLjc1MzkwNiAxNC45MzM1OTQgQyAyLjUwMzkwNiAxNC43MzA0NjkgMy4xNDQ1MzEgMTQuMjc3MzQ0IDMuODM1OTM4IDEzLjk0MTQwNiBDIDQuNzAzMTI1IDEzLjU4NTkzOCA0LjYyMTA5NCAxMi4wMTk1MzEgMy41MjczNDQgMTIuMTY0MDYyIEMgMi45MTAxNTYgMTIuNDg4MjgxIDEuOTY4NzUgMTIuNDAyMzQ0IDIuMDUwNzgxIDExLjQ4MDQ2OSBDIDIuMDQ2ODc1IDguNjY0MDYyIDIuMDA3ODEyIDUuODQzNzUgMi4wNzAzMTIgMy4wMzEyNSBDIDIuMjI2NTYyIDIuMTMyODEyIDMuMjYxNzE5IDIuNDA2MjUgMy43Njk1MzEgMi44MTY0MDYgQyA0LjY3MTg3NSAzLjI5Njg3NSA1LjU1NDY4OCAzLjc5Njg3NSA2LjQ2NDg0NCA0LjI2OTUzMSBDIDcuMzc4OTA2IDQuNzczNDM4IDguMjk2ODc1IDUuMjczNDM4IDkuMjE4NzUgNS43NjU2MjUgQyA5Ljk1MzEyNSA2LjE4MzU5NCAxMC43MzQzNzUgNi41MzkwNjIgMTEuNDI1NzgxIDcuMDIzNDM4IEMgMTIuMDU0Njg4IDcuNzIyNjU2IDExIDguMjE0ODQ0IDEwLjQ2NDg0NCA4LjQzMzU5NCBDIDkuNTQyOTY5IDguODYzMjgxIDguNjY0MDYyIDkuMzYzMjgxIDcuNzI2NTYyIDkuNzUzOTA2IEMgNy4zNzEwOTQgOS45MjE4NzUgNi42MDkzNzUgMTAuNTIzNDM4IDYuNDQ1MzEyIDEwLjIxNDg0NCBDIDYuMzgyODEyIDkuMzM5ODQ0IDYuNDg0Mzc1IDguNDQ1MzEyIDYuMzk0NTMxIDcuNTc4MTI1IEMgNi4yMzQzNzUgNi43NDYwOTQgNC44MjQyMTkgNi43MDMxMjUgNC42NDQ1MzEgNy41NDI5NjkgQyA0LjYyNSA5LjAzMTI1IDQuNjM2NzE5IDEwLjUyNzM0NCA0LjYyODkwNiAxMi4wMTk1MzEgQyA1LjA0Mjk2OSAxMi44MDg1OTQgNi4xNDA2MjUgMTIuOTE3OTY5IDYuODA4NTk0IDEyLjM4MjgxMiBDIDcuNTY2NDA2IDEyIDguMzA4NTk0IDExLjYxNzE4OCA5LjA3MDMxMiAxMS4yMzA0NjkgQyA5LjkxNDA2MiAxMC43ODkwNjIgMTAuNzc3MzQ0IDEwLjM1NTQ2OSAxMS42Mjg5MDYgOS45MTQwNjIgQyAxMi41OTM3NSA5LjM3NSAxMy42MzY3MTkgOC45Njg3NSAxNC41NDI5NjkgOC4zMjgxMjUgQyAxNS40Njg3NSA3LjY5NTMxMiAxNC44Mzk4NDQgNi40Mjk2ODggMTMuOTUzMTI1IDYuMTMyODEyIEMgMTMuMDU4NTk0IDUuNjM2NzE5IDEyLjEyODkwNiA1LjIwMzEyNSAxMS4yMjY1NjIgNC43MTA5MzggQyAxMC4xMjg5MDYgNC4xNDg0MzggOS4wMzkwNjIgMy41ODU5MzggNy45NDUzMTIgMy4wMTU2MjUgQyA3LjM3MTA5NCAyLjczMDQ2OSA2LjgwNDY4OCAyLjQxNzk2OSA2LjIyNjU2MiAyLjEyNSBDIDQuOTg4MjgxIDEuNDk2MDk0IDMuNzU3ODEyIDAuODM1OTM4IDIuNTIzNDM4IDAuMjEwOTM4IEMgMi4wNTQ2ODggLTAuMDc4MTI1IDEuNDk2MDk0IDAuMDExNzE4OCAwLjk3NjU2MiAwLjAxOTUzMTIgWiBNIDUuMjMwNDY5IDQuODMyMDMxIEMgNC41MDM5MDYgNSA0LjM5ODQzOCA2LjEzMjgxMiA1LjA2NjQwNiA2LjQ0OTIxOSBDIDUuNzMwNDY5IDYuODQzNzUgNi43MDMxMjUgNi4yMDcwMzEgNi40NTcwMzEgNS40MjU3ODEgQyA2LjM0NzY1NiA0Ljg3ODkwNiA1LjcwNzAzMSA0LjcwMzEyNSA1LjIzMDQ2OSA0LjgzMjAzMSBaIE0gNS4yMzA0NjkgNC44MzIwMzEgIi8+CjwvZz4KPC9zdmc+Cg== The ministry said there is "currently no evidence no evidence that the B117 strain is circulating in the community". https://www.channelnewsasia.com/news/singapore/covid-19-dec-23-new-cases-imported-community-moh-13828506?cid=TWTcna

hCoV-19/Scotland/CVR6044/2020 is also missing the NSB 6 deletion

hCoV-19/Scotland/CVR6043/2020 is also missing the NSB 6 deletion

https://coronavirus.iowa.gov/#CurrentStatus

Updated Dec. 22, 9:34 p.m. Pacific 1,963,853 confirmed cases +34,800 on Tuesday 23,303 deaths +375 on Tuesday To better understand the COVID-19 pandemic, The Times is conducting an independent, continual survey of dozens of local health agencies across the state. What we know Stay-at-home orders have returned. Most of the state, including Los Angeles County, is currently under stricter rules. New cases have been surging. Over the last seven days, the state has averaged 45,186 cases per day, a 81.6% increase from two weeks ago. Roughly 13.1% of tests this past week have come back positive. Deaths are on the rise. The state has averaged 258.4 daily deaths over the last week, an increase of 91.8% from two weeks ago. Hospitalizations have never been higher. Statewide, there are 17,843 people hospitalized with a confirmed case, 69% more than two weeks ago. Among those patients, 3,755 are in intensive care. Disparities in age and race persist. Roughly 74% of the dead were 65 or older. After adjusting for population, Latinos are now 2.7 times more likely than whites to test positive. California counties +Other trackers +More coverage + Jump to a section Totals Hotspots Maps Hospitals Vaccine Tests Demographics Nursing homes State rankings The latest totals Coronavirus can infect people so rapidly that it has continued to spread despite shutdown orders aimed at slowing the growth of new cases and flattening the line below. The number of cases in California is now on pace to double every 29.4 days, a number used to measure how quickly the virus is spreading. CasesDeaths Cumulative cases Feb.AprilJuneAug.Oct.Dec.0500,0001,000,0001,500,0002,000,000Stay-at-home orderStay-at-home orderGovernoreases limitsGovernoreases limits1,963,853Dec. 22 Times survey of county and local health departments Local governments announce new cases and deaths each day, though bottlenecks in bureaucracy can introduce delays. For instance, some agencies do not report new totals on holidays and weekends, leading to lower numbers on those days. Over the past week, the state has averaged 45,186 new cases and 258.4 new deaths per day. Experts say the true number of people infected is unknown and likely much higher than official tallies. New cases by day Feb.AprilJuneAug.Oct.Dec.010,00020,00030,00040,00050,00060,0007-dayaverage7-dayaverage Deaths by day Feb.AprilJuneAug.Oct.Dec.01002003004007-dayaverage7-dayaverage Seven-day averages offer a more stable view of the trend than daily totals. On the cases chart, gray bars mark when errors in a state computer system delayed the tabulation of new cases. Where new cases are concentrated State officials study the latest data and then rate regions and counties to determine when and how businesses reopen. The government doesn‘t release enough data to replicate its analysis, but the rate of new cases per 100,000 residents over the last seven days provides insight into where the virus is spreading. Metric CasesDeaths Method Per 100kTotals Regions ranked by new cases per 100,000 residents 1. Southern California 909.3 cases per 100k in last 7 days909.3 cases per 100k in last 7 days7-day average │7-day average │March 1Dec. 23 2. San Joaquin Valley 764.3764.37-day average │7-day average │March 1Dec. 23 3. Greater Sacramento 455.1455.17-day average │7-day average │March 1Dec. 23 4. Bay Area 431.4431.47-day average │7-day average │March 1Dec. 23 5. Northern California 358.8358.87-day average │7-day average │March 1Dec. 23 After adjusting for population, the virus is now categorized as widespread in 55 the state's 58 counties, which results in stricter rules being put into place. Together they are home to 99% of California residents. Metric CasesDeaths Method Per 100kTotals Counties ranked by new cases per 100,000 residents 1. San Bernardino 1,816.3 cases per 100k in last 7 days1,816.3 cases per 100k in last 7 days7-day average │7-day average │March 1Dec. 23 2. Lassen 1,8151,8157-day average │7-day average │March 1Dec. 23 3. Fresno 1,415.11,415.17-day average │7-day average │March 1Dec. 23 4. Riverside 1,302.71,302.77-day average │7-day average │March 1Dec. 23 5. Monterey 1,294.11,294.17-day average │7-day average │March 1Dec. 23 6. Tuolumne 1,160.71,160.77-day average │7-day average │March 1Dec. 23 7. Amador 1,0681,0687-day average │7-day average │March 1Dec. 23 8. Los Angeles 1,022.81,022.87-day average │7-day average │March 1Dec. 23 9. Merced 976.7976.77-day average │7-day average │March 1Dec. 23 10. San Joaquin 9109107-day average │7-day average │March 1Dec. 23 11. San Benito 902.1902.17-day average │7-day average │March 1Dec. 23 12. Kings 819.6819.67-day average │7-day average │March 1Dec. 23 13. Colusa 801.3801.37-day average │7-day average │March 1Dec. 23 14. Sutter 778.1778.17-day average │7-day average │March 1Dec. 23 15. Kern 743.6743.67-day average │7-day average │March 1Dec. 23 16. Tulare 734.5734.57-day average │7-day average │March 1Dec. 23 17. Imperial 722.5722.57-day average │7-day average │March 1Dec. 23 18. Orange 710.4710.47-day average │7-day average │March 1Dec. 23 19. Madera 664.5664.57-day average │7-day average │March 1Dec. 23 20. Tehama 631.2631.27-day average │7-day average │March 1Dec. 23 21. San Diego 625.4625.47-day average │7-day average │March 1Dec. 23 22. Stanislaus 613.4613.47-day average │7-day average │March 1Dec. 23 23. Solano 609.1609.17-day average │7-day average │March 1Dec. 23 24. Yuba 574.9574.97-day average │7-day average │March 1Dec. 23 25. Ventura 557.7557.77-day average │7-day average │March 1Dec. 23 26. Placer 536.5536.57-day average │7-day average │March 1Dec. 23 27. Mono 500.9500.97-day average │7-day average │March 1Dec. 23 28. Inyo 475.5475.57-day average │7-day average │March 1Dec. 23 29. Sacramento 460.2460.27-day average │7-day average │March 1Dec. 23 30. Santa Clara 432.9432.97-day average │7-day average │March 1Dec. 23 31. San Luis Obispo 414.3414.37-day average │7-day average │March 1Dec. 23 32. Napa 414.1414.17-day average │7-day average │March 1Dec. 23 33. El Dorado 407.2407.27-day average │7-day average │March 1Dec. 23 34. Yolo 398.6398.67-day average │7-day average │March 1Dec. 23 35. Butte 395.9395.97-day average │7-day average │March 1Dec. 23 36. Sonoma 380.8380.87-day average │7-day average │March 1Dec. 23 37. Santa Cruz 378.8378.87-day average │7-day average │March 1Dec. 23 38. Lake 377.3377.37-day average │7-day average │March 1Dec. 23 39. Contra Costa 3773777-day average │7-day average │March 1Dec. 23 40. Modoc 3583587-day average │7-day average │March 1Dec. 23 41. Del Norte 353.7353.77-day average │7-day average │March 1Dec. 23 42. San Mateo 350.3350.37-day average │7-day average │March 1Dec. 23 43. Alameda 343.9343.97-day average │7-day average │March 1Dec. 23 44. Plumas 342.3342.37-day average │7-day average │March 1Dec. 23 45. Santa Barbara 323.4323.47-day average │7-day average │March 1Dec. 23 46. Mendocino 275.7275.77-day average │7-day average │March 1Dec. 23 47. Glenn 261.7261.77-day average │7-day average │March 1Dec. 23 48. San Francisco 244.6244.67-day average │7-day average │March 1Dec. 23 49. Nevada 240.2240.27-day average │7-day average │March 1Dec. 23 50. Siskiyou 229.7229.77-day average │7-day average │March 1Dec. 23 51. Marin 226.7226.77-day average │7-day average │March 1Dec. 23 52. Trinity 209.9209.97-day average │7-day average │March 1Dec. 23 53. Shasta 202.7202.77-day average │7-day average │March 1Dec. 23 54. Alpine 174.2174.27-day average │7-day average │March 1Dec. 23 55. Calaveras 170.2170.27-day average │7-day average │March 1Dec. 23 56. Humboldt 140.7140.77-day average │7-day average │March 1Dec. 23 57. Mariposa 136.8136.87-day average │7-day average │March 1Dec. 23 58. Sierra 68.368.37-day average │7-day average │March 1Dec. 23 Show less The Times' calculation of per capita rates can vary from what's published elsewhere. To learn more about how and why this count sometimes differs from official figures, consult our FAQ. What's open where? See how the governor has rated all 58 counties, and what that means for reopening, in our county reopening tracker. Mapping the toll The coronavirus has been found in all 58 counties, from urban Southern California to the state's rural north. Cumulative totals Metric CasesDeaths Method Per 100kTotals Confirmed cases1.1k2k3k4k5.4k7.9k11.6k Hover for more information. Los AngelesLos AngelesSan DiegoSan DiegoSacramentoSacramentoSan FranciscoSan FranciscoReddingReddingFresnoFresno Cumulative totals County Cases Per 100k Tuesday Deaths Per 100k Tuesday Lassen » 4,156 13,326.9 +40 8 25.7 – Imperial » 20,895 11,594.4 +107 400 222 +4 Kings » 14,883 9,917 +97 105 70 +1 San Bernardino » 168,307 7,881.7 +4,362 1,387 65 +12 Kern » 60,260 6,824.1 +1,112 482 54.6 +1 Tulare » 30,051 6,526.1 +687 360 78.2 +6 Los Angeles » 648,062 6,417.7 +11,872 9,031 89.4 +96 Riverside » 151,713 6,365.7 +1,291 1,789 75.1 +36 Merced » 17,111 6,359.2 +351 225 83.6 +2 Sutter » 5,863 6,115.4 +89 46 48 +1 Fresno » 58,568 5,987.8 +952 646 66 +89 Madera » 9,150 5,902.7 +155 111 71.6 – Stanislaus » 31,106 5,767.8 +557 544 100.9 +11 Mono » 806 5,686.5 +11 4 28.2 +1 Alpine » 65 5,662 – 0 0 – Amador » 2,115 5,590.9 +34 23 60.8 – Colusa » 1,187 5,530.2 +75 8 37.3 – Monterey » 23,827 5,500.1 +245 180 41.6 +2 San Joaquin » 39,304 5,367.8 +740 592 80.9 +4 San Benito » 3,074 5,173.7 +110 24 40.4 +1 Tuolumne » 2,569 4,763.4 +17 20 37.1 – Yuba » 3,492 4,625.6 +70 16 21.2 +1 Glenn » 1,273 4,563.2 – 12 43 – Tehama » 2,872 4,531.9 +131 32 50.5 – Orange » 130,414 4,121.6 +2,233 1,779 56.2 +2 Shasta » 7,290 4,070.7 – 68 38 – San Diego » 132,098 3,999.5 +2,381 1,311 39.7 +28 Sacramento » 58,001 3,841.1 +919 786 52.1 +12 Ventura » 32,144 3,790.1 +737 216 25.5 +6 Solano » 16,568 3,778.1 +344 94 21.4 – Marin » 9,205 3,536.4 +72 136 52.2 – Napa » 4,965 3,533.1 +156 25 17.8 +2 Santa Barbara » 15,198 3,425 +263 150 33.8 +2 Sonoma » 17,005 3,392.1 +299 177 35.3 +3 Yolo » 7,234 3,365 +134 108 50.2 +4 Modoc » 292 3,267 +5 0 0 – San Luis Obispo » 9,061 3,219.3 +258 65 23.1 +5 Contra Costa » 35,788 3,158 +466 298 26.3 – Placer » 11,761 3,094.4 +220 109 28.7 +5 Santa Clara » 58,637 3,050.5 +1,185 615 32 +8 Inyo » 531 2,936.1 +17 20 110.6 +1 Butte » 6,473 2,850.6 +129 83 36.6 – San Mateo » 21,558 2,814.6 +398 203 26.5 +5 Alameda » 44,623 2,714.8 +887 609 37.1 +21 El Dorado » 4,958 2,656.2 +81 12 6.4 +2 Santa Cruz » 7,180 2,622.7 +45 73 26.7 – Mendocino » 2,292 2,621.8 +36 25 28.6 – Del Norte » 679 2,475.9 +6 2 7.3 – Lake » 1,583 2,467.7 +59 22 34.3 – Siskiyou » 1,067 2,450.6 +8 8 18.4 – San Francisco » 20,976 2,410.9 +268 176 20.2 – Nevada » 2,361 2,382.6 +34 42 42.4 – Plumas » 435 2,326.3 +11 2 10.7 +1 Trinity » 262 2,037 – 2 15.5 – Calaveras » 754 1,666.9 +32 22 48.6 – Mariposa » 205 1,168.8 – 4 22.8 – Sierra » 34 1,160.4 – 0 0 – Humboldt » 1,512 1,113.7 +12 16 11.8 – Show less Residents of cities, neighborhoods and regions all across the state have contracted the coronavirus. Here are the latest tallies for 1,321 places as released by county health departments. Confirmed cases 100 1,000 10,000 Counties that do not report cases by locality © Mapbox © OpenStreetMap Improve this map The following counties currently do not report cases by locality: Alpine, Colusa, Glenn, Mariposa, Modoc, San Benito, Sierra, Tehama and Tuolumne Filter by countyAlameda Amador Butte Calaveras Contra Costa Del Norte El Dorado Fresno Humboldt Imperial Inyo Kern Kings Lake Lassen Los Angeles Madera Marin Mendocino Merced Mono Monterey Napa Nevada Orange Placer Plumas Riverside Sacramento San Bernardino San Diego San Francisco San Joaquin San Luis Obispo San Mateo Santa Barbara Santa Clara Santa Cruz Shasta Siskiyou Solano Sonoma Stanislaus Sutter Trinity Tulare Ventura Yolo Yuba Search by name Area Confirmed cases East Los Angeles 14,346 Pomona 14,025 Palmdale 13,076 Lancaster 11,837 North Hollywood 10,655 South Gate 10,031 Santa Clarita 9,919 Downey 9,685 Boyle Heights 9,660 El Monte 9,618 Glendale 9,467 Pacoima 9,369 Compton 8,982 Sylmar 8,477 Norwalk 8,226 Van Nuys 8,003 Unincorporated - Florence-Firestone 7,663 Lynwood 7,249 Panorama City 7,199 Baldwin Park 6,917 West Covina 6,872 Inglewood 6,742 90805: Long Beach 6,700 Huntington Park 6,290 Pico Rivera 6,235 Vernon Central 6,138 Whittier 6,045 Reseda 6,038 Pasadena 5,812 Montebello 5,667 Bellflower 5,531 West Vernon 5,404 Paramount 5,345 Florence-Firestone 5,195 Hawthorne 4,981 North Hills 4,910 Canoga Park 4,819 Sun Valley 4,723 South Whittier 4,664 Bell Gardens 4,639 Carson 4,429 Westlake 4,388 Burbank 4,295 Central 4,278 Melrose 4,275 Wilmington 4,238 South Park 4,221 Watts 4,133 Vermont Vista 4,101 90813: Long Beach 4,050 Wholesale District 4,024 Pico-Union 3,778 Northridge 3,764 San Pedro 3,743 La Puente 3,739 Harvard Park 3,712 Arleta 3,651 Bell 3,576 Azusa 3,481 Winnetka 3,427 Covina 3,402 Lakewood 3,391 Alhambra 3,348 Granada Hills 3,306 Century Palms/Cove 3,291 El Sereno 3,287 Athens-Westmont 3,233 Exposition Park 3,230 Torrance 3,223 Willowbrook 3,200 Gardena 3,088 90806: Long Beach 2,982 Maywood 2,958 Highland Park 2,926 Hollywood 2,891 Sherman Oaks 2,854 Lake Balboa 2,799 Castaic 2,745 Lincoln Heights 2,722 Hacienda Heights 2,720 Temple-Beaudry 2,715 San Fernando 2,684 Wilshire Center 2,647 Koreatown 2,606 Glendora 2,589 Cudahy 2,552 90810: Long Beach 2,423 Woodland Hills 2,412 West Whittier/Los Nietos 2,408 Harbor Gateway 2,395 Monterey Park 2,376 Rosemead 2,359 Mission Hills 2,324 90804: Long Beach 2,300 Santa Monica 2,289 La Mirada 2,217 90802: Long Beach 2,103 West Adams 2,059 Downtown 2,051 Green Meadows 2,036 Valley Glen 2,011 University Park 2,001 Valinda 1,973 San Jose Hills 1,940 South El Monte 1,924 Chatsworth 1,895 Eagle Rock 1,867 Rowland Heights 1,814 Hyde Park 1,804 Encino 1,751 Tarzana 1,719 Lawndale 1,712 Altadena 1,693 Lennox 1,689 Silver Lake 1,678 Monrovia 1,672 Glassell Park 1,646 Walnut Park 1,607 San Gabriel 1,606 Diamond Bar 1,602 East Hollywood 1,593 San Dimas 1,573 Vermont Knolls 1,562 West Hills 1,486 East Rancho Dominguez 1,463 90815: Long Beach 1,459 Santa Fe Springs 1,459 Mt. Washington 1,441 La Verne 1,428 Baldwin Hills 1,415 Bassett 1,409 Beverly Hills 1,403 Commerce 1,403 90807: Long Beach 1,401 Cerritos 1,375 Redondo Beach 1,339 Arcadia 1,312 Tujunga 1,307 Harvard Heights 1,276 West Hollywood 1,271 Unincorporated - Azusa 1,270 90808: Long Beach 1,266 Lakeview Terrace 1,264 Temple City 1,256 Little Bangladesh 1,252 Palms 1,229 Unincorporated - Covina 1,216 Porter Ranch 1,213 Hawaiian Gardens 1,208 West Los Angeles 1,208 Harbor City 1,203 Westwood 1,191 Duarte 1,184 Claremont 1,167 Sunland 1,147 Westchester 1,097 Valley Village 1,084 Del Rey 1,082 Historic Filipinotown 1,072 Culver City 1,059 90803: Long Beach 1,023 West Carson 987 Artesia 981 West Puente Valley 964 Mar Vista 930 Northeast San Gabriel 879 Walnut 868 Venice 857 Alsace 833 Hollywood Hills 822 Lake Los Angeles 814 Leimert Park 812 Cloverdale/Cochran 810 Country Club Park 806 Covina (Charter Oak) 793 Crenshaw District 774 Vermont Square 773 Brentwood 766 Figueroa Park Square 766 Studio City 713 Manhattan Beach 706 Echo Park 699 90814: Long Beach 697 South Pasadena 680 Rancho Palos Verdes 666 Atwater Village 654 Gramercy Place 636 Little Armenia 635 Elysian Valley 632 Athens Village 630 Jefferson Park 629 Adams-Normandie 626 Mid-city 625 Calabasas 617 Avocado Heights 610 Quartz Hill 608 Signal Hill 594 Lomita 588 North Whittier 564 Los Feliz 550 Victoria Park 547 Carthay 539 Hancock Park 524 Hermosa Beach 515 Stevenson Ranch 508 Crestview 503 Agoura Hills 495 La Crescenta-Montrose 494 Unincorporated - Duarte 484 South San Gabriel 477 Miracle Mile 472 Sun Village 470 Manchester Square 464 Thai Town 437 Beverlywood 436 Canyon Country 417 Chinatown 391 La Canada Flintridge 387 El Camino Village 384 Cadillac-Corning 364 Pacific Palisades 361 View Park/Windsor Hills 359 South Carthay 351 Beverly Crest 333 Reseda Ranch 328 St Elmo Village 325 El Segundo 318 Century City 305 Longwood 299 Wellington Square 298 Playa Vista 297 Park La Brea 293 Lafayette Square 283 Elysian Park 277 Wiseburn 270 Santa Monica Mountains 265 Toluca Lake 265 East La Mirada 264 Littlerock 263 Rosewood/West Rancho Dominguez 258 Unincorporated - Arcadia 258 Sierra Madre 254 Littlerock/Pearblossom 253 East Whittier 230 Acton 222 Cheviot Hills 214 Little Tokyo 204 Malibu 197 Ladera Heights 195 San Marino 195 Shadow Hills 194 Marina del Rey 193 Unincorporated - Monrovia 193 Desert View Highlands 192 Palos Verdes Estates 192 Exposition 190 Unincorporated - South El Monte 190 Bel Air 187 Rancho Dominguez 185 Rancho Park 173 Unincorporated - Whittier 158 Irwindale 157 Del Aire 156 Unincorporated - Hawthorne 156 Val Verde 155 Angelino Heights 152 White Fence Farms 152 La Rambla 134 University Hills 132 East Pasadena 131 Rolling Hills Estates 127 Sunrise Village 122 Reynier Village 118 Unincorporated - West LA 116 View Heights 113 Agua Dulce 108 Regent Square 107 Kagel/Lopez Canyons 101 Valencia 95 Industry 94 Faircrest Heights 93 Unincorporated - La Verne 93 La Habra Heights 88 Pellissier Village 87 West Rancho Dominguez 83 Del Sur 82 Harbor Pines 81 Anaverde 79 Marina Peninsula 79 Rosewood/East Gardena 79 North Lancaster 78 Santa Catalina Island 78 Palisades Highlands 76 Mandeville Canyon 70 Westlake Village 69 Saugus 67 Rosewood 66 Lake Manor 65 Toluca Terrace 65 Toluca Woods 61 Leona Valley 58 Playa Del Rey 58 Littlerock/Juniper Hills 57 Pearblossom/Llano 53 Newhall 51 Southeast Antelope Valley 48 Twin Lakes/Oat Mountain 48 Unincorporated - Palmdale 48 Vernon 47 Roosevelt 45 Unincorporated - Cerritos 40 Unincorporated - Pomona 40 Unincorporated - Glendora 39 Hidden Hills 33 Unincorporated - Claremont 33 Bradbury 32 Elizabeth Lake 30 Westhills 26 Bouquet Canyon 22 Hi Vista 22 Llano 22 Saugus/Canyon Country 21 Rolling Hills 20 San Pasqual 20 Lake Hughes 19 West Antelope Valley 18 Westfield/Academy Hills 18 Sycamore Square 17 East Covina 16 Unincorporated - Angeles National Forest 15 Palos Verdes Peninsula 14 Unincorporated - Del Rey 14 Brookside 13 South Antelope Valley 13 Unincorporated - El Monte 13 Unincorporated - La Habra Heights 11 Unincorporated - Bradbury 10 Sand Canyon 8 Avalon 6 East Lancaster 6 Padua Hills 6 Whittier Narrows 6 San Francisquito Canyon/Bouquet Canyon 4 Angeles National Forest 3 West Chatsworth 1 Show less Hospitals and patients Stay-at-home orders aim to slow the virus in hope of preventing hospitals from being overrun. To keep tabs on available beds, officials watch out for rapid increases in the number of patients. There are now 17,843 hospital patients statewide with a confirmed case, a change of 69% from two weeks ago. ConfirmedSuspectedBoth Intensive care and other hospitalized patients AprilJuneAug.Oct.Dec.05,00010,00015,00020,000 California Department of Public Health Confirmed patients County ICU Other Total Los Angeles » 1,234 4,921 6,155 Orange » 390 1,416 1,806 San Bernardino » 326 1,292 1,618 San Diego » 341 973 1,314 Riverside » 250 1,028 1,278 Santa Clara » 138 461 599 Fresno » 123 464 587 Sacramento » 104 396 500 Alameda » 106 267 373 Stanislaus » 58 307 365 Kern » 73 275 348 San Joaquin » 74 254 328 Ventura » 71 202 273 Contra Costa » 57 181 238 Tulare » 24 174 198 Imperial » 40 154 194 Placer » 27 148 175 Monterey » 32 133 165 San Francisco » 45 117 162 San Mateo » 29 101 130 Solano » 29 89 118 Santa Barbara » 22 91 113 Butte » 10 85 95 Kings » 10 77 87 Merced » 15 51 66 Yuba » 9 53 62 Sonoma » 16 46 62 Santa Cruz » 15 45 60 Shasta » 7 50 57 San Luis Obispo » 9 35 44 Madera » 9 28 37 Marin » 9 19 28 Yolo » 12 12 24 El Dorado » 5 18 23 Napa » 6 14 20 Nevada » 4 13 17 San Benito » 3 12 15 Mendocino » 4 10 14 Colusa » 0 12 12 Tuolumne » 3 7 10 Tehama » 4 6 10 Inyo » 0 10 10 Siskiyou » 3 6 9 Amador » 1 7 8 Lake » 2 5 7 Calaveras » 3 3 6 Humboldt » 2 4 6 Lassen » 0 5 5 Glenn » 0 5 5 Plumas » 0 5 5 Del Norte » 1 1 2 Sutter » 0 0 0 Mono » 0 0 0 Modoc » 0 0 0 Trinity » 0 0 0 Mariposa » 0 0 0 Show less Officials also closely monitor the number of beds open in intensive-care units. The latest data show that there are 1,399 available statewide. Available ICU beds Aug.Sept.Oct.Nov.Dec.05001,0001,5002,0002,5003,0003,5001,399Dec. 21 California Department of Public Health Officials have organized the state’s counties into five regions. If a region’s available percentage of intensive-care beds falls below 15%, a stay-at-home order is issued. Three regions currently fail. Available ICU beds by region 01530Dec.3Dec.22Bay AreaBay Area13.5%13.5% Greater SacramentoGreater Sacramento15.7%15.7% Northern CaliforniaNorthern California29.5%29.5% San Joaquin ValleySan Joaquin Valley0.0%0.0% Southern CaliforniaSouthern California0.0%0.0% Vaccines California officials have begun to distribute the state’s first batch of coronavirus vaccine. The initial shipments are expected to add up to about 1.2 million doses and are being administered to healthcare workers who face the greatest exposure to the virus and residents of long-term care facilities, such as nursing homes. The state has yet to release figures on how many people have been vaccinated so far. Officials are still drafting a plan on how to roll out the shot beyond the initial group. It is unclear when essential workers and other Californians will have access. Phase 1 Healthcare workers and long-term care residents Doctors and nurses on the front lines are now receiving shots. Other healthcare workers and nursing homes come next in this step. Phase 2 Essential workers Emergency personnel, teachers and farmworkers are expected to be next in line. There is no start date. Who else will qualify is undecided. Phase 3 Everyone else It’s unclear how long the rest of California’s nearly 40 million residents may wait. Experts say shots may be readily available by late spring or summer. Testing After a fitful start, California has increased coronavirus testing in the state. Over the last week, an average of 335,017 tests have been conducted each day. New tests by day MayJulySept.Nov.0100,000200,000300,000400,0007-dayaverage7-dayaverage California Department of Public Health In the last seven days, about 13.1% of the 2,345,116 tests conducted have returned a positive result. Positive test rate, seven-day average MayJulySept.Nov.0%5%10%15%13.1%Dec. 22 California Department of Public Health Wide disparities in age and race While younger adults make up the majority of positive tests, deaths due to the virus have skewed heavily toward the elderly. Percentage of cases vs. population 0%10%20%30%40%50%80+75-7970-7465-6960-6450-5935-4918-345-170-4 Percentage of deaths vs. population 0%10%20%30%40%50%80+75-7970-7465-6960-6450-5935-4918-345-170-4 There are 1237 cases with an unreported age. California Department of Public Health The state has logged the race of the patient in nearly two-thirds of cases. Latinos and Black people have contracted the virus at a higher rate than white and Asian people. After adjusting for population, Latinos are now 2.7 times more likely to test positive than white people. Cumulative cases by race per 100,000 people JuneAug.Oct.Dec.01,0002,0003,0004,000AsianAsianBlackBlackLatino4,506 casesper 100,000Latino4,506 casesper 100,000OtherOtherWhiteWhite The other category includes Native Americans and people of two or more races. California Department of Public Health One outcome is that among most age groups, and especially younger people, Black people and Latinos are dying more often than other races relative to their share of the population. Percentage of deaths vs. population Age: All 18+ 0-17 18-34 35-49 50-64 65-79 80+ CasesDeaths 0%20%40%60%80%BlackAsianWhiteLatino Race Deaths Deaths Pct. Population Pct. Latino 10,307 47.9% 36.3% White 6,642 30.9% 38.8% Asian 2,600 12.1% 16.5% Black 1,534 7.1% 6.1% Note: There are 309 deaths with an unknown race in this age bracket, 1% of the total. Lives lost to COVID-19 Learn more about those we've lost by reading Times obituaries of Californians who have died from coronavirus. Nursing homes Nursing homes are a tragic focal point of the outbreak. Residents and staff have accounted for 5% the state's coronavirus cases, but 35% of its deaths. CasesDeaths Deaths at nursing homes vs. elsewhere JuneAug.Oct.Dec.05,00010,00015,00020,000 California Department of Public Health Track outbreaks in California nursing homes Follow the data and look up the latest tallies at the hundreds of skilled-nursing and assisted-living facilities across the state. California in context To date, the United States has recorded 17,642,882 coronavirus cases and 316,028 deaths. In the last week, the country has averaged 215,601 new cases and 2,607 deaths per day. While California — America’s most populous state — has the nation’s top case counts, it ranks much lower after adjusting for population. Home to 12% of the country's population, thus far it has accounted for roughly 11% of cases. New cases in California vs. the rest of the country MarchMayJulySept.Nov.050,000100,000150,000200,000250,000 Johns Hopkins University CSSE, Times survey State Cases Per 100k Last 14 days Per 100k New cases FewerMore California 1,839,218 4,698 508,494 1,298.9 Mar 1Dec 19 Texas 1,584,207 5,681.2 210,853 756.1 Ohio 614,429 5,277.7 146,997 1,262.7 Florida 1,193,165 5,792.6 143,527 696.8 New York 838,085 4,271.9 142,138 724.5 Pennsylvania 552,895 4,322.5 137,260 1,073.1 Illinois 894,367 6,975.5 114,392 892.2 Tennessee 503,651 7,572.5 106,129 1,595.7 Arizona 448,231 6,452.4 89,331 1,286 North Carolina 472,268 4,650.3 83,716 824.3 Georgia 582,300 5,654.8 82,929 805.3 Indiana 457,871 6,898.3 82,852 1,248.3 Michigan 496,056 4,981.7 69,480 697.8 Massachusetts 319,270 4,674.4 67,253 984.6 New Jersey 427,417 4,812.3 65,431 736.7 Wisconsin 490,679 8,491.6 52,761 913.1 Alabama 319,904 6,576.1 52,315 1,075.4 Virginia 302,972 3,600.9 51,799 615.6 Minnesota 394,635 7,139.7 49,354 892.9 Colorado 306,598 5,543.1 49,251 890.4 Missouri 372,541 6,117.2 46,953 771 Oklahoma 255,868 6,530.3 42,623 1,087.8 Kentucky 240,563 5,417.8 42,499 957.1 South Carolina 270,537 5,458.9 41,302 833.4 Washington 222,600 3,051.7 39,519 541.8 Maryland 248,754 4,143.5 36,370 605.8 Nevada 201,858 6,906.2 36,230 1,239.5 Utah 248,970 8,175.4 36,126 1,186.3 Louisiana 282,434 6,056.1 35,257 756 Connecticut 162,782 4,545.1 35,067 979.1 Kansas 203,649 7,001.2 32,286 1,110 Arkansas 200,114 6,691.3 30,732 1,027.6 Mississippi 192,111 6,427.8 28,653 958.7 Iowa 266,959 8,522.2 23,574 752.6 New Mexico 128,930 6,161.7 22,074 1,054.9 Idaho 129,069 7,647.1 19,364 1,147.3 Oregon 101,814 2,494.3 18,571 455 West Virginia 71,215 3,893.5 17,643 964.6 Nebraska 155,415 8,159.3 16,847 884.5 Rhode Island 77,812 7,364.3 15,675 1,483.5 Puerto Rico 67,211 1,984.4 11,679 344.8 New Hampshire 35,609 2,650.2 11,471 853.7 Delaware 50,136 5,280.3 11,040 1,162.7 Montana 76,619 7,355 9,550 916.7 South Dakota 94,336 10,914.9 9,032 1,045 Alaska 43,688 5,915.6 7,417 1,004.3 North Dakota 89,784 11,936.2 7,280 967.8 Maine 18,738 1,405.9 5,611 421 Wyoming 41,488 7,130.5 5,547 953.4 District of Columbia 26,342 3,848.4 3,470 506.9 Hawaii 20,375 1,432.8 1,637 115.1 Vermont 6,343 1,014.9 1,449 231.8 Show less The same is true for deaths. So far, California has accounted for 7% of deaths nationwide. It still trails far behind New York, where deaths surged in the early days of the pandemic. New deaths in California vs. the rest of the country MarchMayJulySept.Nov.01,0002,0003,0004,000 Johns Hopkins University CSSE, Times survey State Deaths Per 100k Last 14 days Per 100k New deaths FewerMore California 22,598 57.7 2,717 6.9 Mar 1Dec 19 Texas 25,714 92.2 2,604 9.3 Pennsylvania 13,754 107.5 2,563 20 Illinois 16,326 127.3 2,310 18 Michigan 12,074 121.3 1,753 17.6 Florida 20,473 99.4 1,389 6.7 New York 36,318 185.1 1,379 7 Indiana 7,338 110.6 1,131 17 Ohio 8,031 69 1,085 9.3 Tennessee 5,960 89.6 1,055 15.9 Arizona 7,937 114.3 1,012 14.6 Colorado 4,339 78.4 982 17.8 New Jersey 18,173 204.6 867 9.8 Minnesota 4,839 87.5 860 15.6 Iowa 3,532 112.8 850 27.1 Wisconsin 4,722 81.7 788 13.6 Missouri 5,048 82.9 772 12.7 Massachusetts 11,657 170.7 704 10.3 North Carolina 6,184 60.9 668 6.6 Maryland 5,412 90.1 592 9.9 Georgia 10,381 100.8 588 5.7 Arkansas 3,191 106.7 571 19.1 Kansas 2,341 80.5 555 19.1 Alabama 4,389 90.2 512 10.5 Nevada 2,749 94.1 448 15.3 Virginia 4,643 55.2 446 5.3 Louisiana 6,994 150 446 9.6 Mississippi 4,390 146.9 441 14.8 Connecticut 5,581 155.8 435 12.1 New Mexico 2,155 103 417 19.9 South Carolina 4,895 98.8 378 7.6 Oklahoma 2,189 55.9 315 8 Oregon 1,340 32.8 313 7.7 Kentucky 2,371 53.4 309 7 West Virginia 1,122 61.3 293 16 Nebraska 1,475 77.4 281 14.8 South Dakota 1,350 156.2 259 30 Idaho 1,275 75.5 243 14.4 Washington 3,104 42.6 237 3.2 North Dakota 1,231 163.7 218 29 Rhode Island 1,625 153.8 212 20.1 Utah 1,148 37.7 209 6.9 Puerto Rico 1,342 39.6 157 4.6 Montana 864 82.9 130 12.5 New Hampshire 650 48.4 91 6.8 Wyoming 351 60.3 85 14.6 Delaware 858 90.4 76 8 Maine 292 21.9 65 4.9 Alaska 184 24.9 41 5.6 District of Columbia 730 106.6 35 5.1 Vermont 108 17.3 29 4.6 Hawaii 281 19.8 20 1.4 Show less Tracking the coronavirus California counties Alameda Alpine Amador Butte Calaveras Colusa Contra Costa Del Norte El Dorado Fresno Glenn Humboldt Imperial Inyo Kern Kings Lake Lassen Los Angeles Madera Marin Mariposa Mendocino Merced Modoc Mono Monterey Napa Nevada Orange Placer Plumas Riverside Sacramento San Benito San Bernardino San Diego San Francisco San Joaquin San Luis Obispo San Mateo Santa Barbara Santa Clara Santa Cruz Shasta Sierra Siskiyou Solano Sonoma Stanislaus Sutter Tehama Trinity Tulare Tuolumne Ventura Yolo Yuba Other trackers Housing homeless people Nursing homes State prisons Following the curve Unemployment and economic fallout Which counties are open Which beaches are closed Lives lost Frequently asked questions More coverage Coronavirus symptoms How coronavirus spreads Get our newsletter About the numbers This page was created by Swetha Kannan, Casey Miller, Sean Greene, Lorena Iñiguez Elebee, Rong-Gong Lin II, Ryan Murphy, Melody Gutierrez, Priya Krishnakumar, Sandhya Kambhampati, Maloy Moore, Jennifer Lu, Aida Ylanan, Vanessa Martínez, Ryan Menezes, Thomas Suh Lauder, Andrea Roberson, Ben Poston, Nicole Santa Cruz, Iris Lee, Rahul Mukherjee, Jaclyn Cosgrove, Anthony Pesce, Paul Duginski and Phi Do. State and county totals come from an ongoing Times survey of California’s 58 county health agencies as well as the three run by cities. Those figures are ahead of the totals periodically released by the state’s Department of Public Health. State officials acknowledge that their tallies lag behind the updates posted by local agencies throughout the day and do not dispute The Times’ method. Data on hospitalizations, tests, demographics and reopening plans come from the state health department. Nursing home totals include skilled-nursing facilities tracked by the state public health department, as well as assisted-living facilities monitored by the California Department of Social Services. Data from other states, Washington, D.C. and Puerto Rico are collected by researchers at the Johns Hopkins University Center for Systems Science and Engineering. Counties are organized into regions using the groupings developed by the state health department. The Times database is available to the public on Github, a popular website for hosting data and computer code. The files will be updated daily at github.com/datadesk/california-coronavirus-data. The data collection effort is done in partnership with journalists at the San Francisco Chronicle, the San Diego Union-Tribune, KQED, KPCC, CapRadio, Calmatters and Stanford’s Big Local News. Learn more about The Times count by reading this list of frequently asked questions or by reading this interview with members of our team. If you see information here that you believe is incorrect or out of date, please contact Data and Graphics Editor Ben Welsh at [email protected]. Change log Dec. 14 New charts were added ranking the rate of new cases in the state’s five regions over the last seven days. Dec. 12 New charts were added plotting the ICU capacity in the state’s five region over time. Dec. 3 The state’s new ICU availability metric were added to county reopening profiles. Nov. 13 A chart tracking changes in tier assignments was added to the reopenings tracker. Nov. 9 Per-capita totals for city-level data added to some county pages. Oct. 19 Maps were added for case counts in Del Norte, Lake, Siskiyou, Trinity counties. Oct. 17 The hotspots section now offers a ranking of counties by the total number of cases and deaths in the past week. Oct. 9 Charts plotting the daily trend in cities and regions added to most county pages. Oct. 4 Charts plotting how each area stacks up against the state’s reopening benchmarks added to county pages. Oct. 1 City-level totals added for Shasta County. Sept. 27 Totals for skilled-nursing facilities are now drawn from the state's open data portal, which is promoted as the most comprehensive and up-to-date source. Sept. 26 The hotspots section now offers a ranking of counties by deaths per 100,000 residents over the last seven days. Sept. 22 Nursing home lists moved to a new page focused on skilled-nursing and assisted-living facilities. Sept. 13 The logarithmic curves plotting the rate of growth in each state were replaced. Instead, stacked-bar charts compare California's case and death counts against the rest of the nation. Sept. 12 The county map is now exclusively focused on cumulative totals and starts off by displaying grand totals per 100,000 residents. Sept. 11 The logarithmic curves plotting the rate of growth in each county were replaced. Instead, after adjusting for population, counties are now ranked by the number new cases announced in the past week. The reopening map has been removed and can be found by visiting our more complete county reopening tracker. https://www.latimes.com/projects/california-coronavirus-cases-tracking-outbreak/

Same constellation for hCoV-19/Scotland/CVR6031/2020

Another isolate from Scotland (hCoV-19/Scotland/CVR5974/2020) has the same constellation (the common 7 Spike non-synonymous changes and the Y145 deletion but no deletion of position 69/70 and no deletion in NSB 6.

Recently release sequences (at GISAID) provide compelling evidence that the UK variant is rapidly evolving via recombination. An isolate from Scotland (hCoV-19/Scotland/CVR6032/2020) has 8 of the 10 Spike mutations - it is missing the 6 BP deletion that encodes H69 and V70. Moreover, it is missing the 9 BP deletion in NSB 6. The presence and absence of these well established deletions in the UK variants is most easily explained by rapid recombination.

Finding withdrawn sequences is difficult, but sequences are frequently modified after submission at Genbank, but the original sequence(s) remain available and a new number is assigned to the new sequence (as .1, .2, etc)

As noted above, the variant was collected on Dec 8

The list above are those submitted yesterday. Only the variant has been removed, but these are presumed to be from samples from people in Singapore on the collection date.

EPI_ISL_728189 is currently not available at the Submitter's request.

This sequence appears to have been removed from the database Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab Virus name Passage details/history Accession ID Collection date Submission Date Length Host Location Originating lab Submitting lab hCoV-19/Singapore/1465/2020 Original EPI_ISL_728201 2020-12-08 2020-12-22 29,852 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1464/2020 Original EPI_ISL_728200 2020-12-12 2020-12-22 29,877 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1463/2020 Original EPI_ISL_728199 2020-12-10 2020-12-22 29,852 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1462/2020 Original EPI_ISL_728198 2020-12-13 2020-12-22 29,880 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1461/2020 Original EPI_ISL_728197 2020-12-11 2020-12-22 29,853 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1460/2020 Original EPI_ISL_728196 2020-12-11 2020-12-22 29,810 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1459/2020 Original EPI_ISL_728195 2020-12-10 2020-12-22 29,879 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1458/2020 Original EPI_ISL_728194 2020-12-06 2020-12-22 29,891 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1457/2020 Original EPI_ISL_728193 2020-12-11 2020-12-22 29,874 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1456/2020 Original EPI_ISL_728192 2020-12-11 2020-12-22 29,874 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1455/2020 Original EPI_ISL_728191 2020-12-09 2020-12-22 29,883 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1454/2020 Original EPI_ISL_728190 2020-12-05 2020-12-22 29,886 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1452/2020 Original EPI_ISL_728188 2020-12-02 2020-12-22 29,841 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1451/2020 Original EPI_ISL_728187 2020-12-04 2020-12-22 29,796 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1450/2020 Original EPI_ISL_728186 2020-12-04 2020-12-22 29,861 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1449/2020 Original EPI_ISL_728185 2020-12-06 2020-12-22 29,817 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1448/2020 Original EPI_ISL_728184 2020-12-07 2020-12-22 29,885 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1447/2020 Original EPI_ISL_728183 2020-12-07 2020-12-22 29,887 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1446/2020 Original EPI_ISL_728182 2020-12-06 2020-12-22 29,889 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1445/2020 Original EPI_ISL_728181 2020-12-05 2020-12-22 29,874 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1444/2020 Original EPI_ISL_728180 2020-12-07 2020-12-22 29,890 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases National Public Health Laboratory, National Centre for Infectious Diseases hCoV-19/Singapore/1443/2020 Original EPI_ISL_728179 2020-12-05 2020-12-22 29,887 Human Asia / Singapore National Public Health Laboratory, National Centre for Infectious Diseases