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USDA Confirms Second Case of Highly Pathogenic Avian Influenza in a Commercial Flock in Lincoln County, Tennessee USDA Animal and Plant Health Inspection Service sent this bulletin at 03/16/2017 11:15 AM EDT The United States Department of Agriculture’s (USDA) Animal and Plant Health Inspection Service (APHIS) has confirmed a second case of highly pathogenic H7N9 avian influenza in a commercial breeder flock in Lincoln County, Tennessee. This H7N9 strain is of North American wild bird lineage and is the same strain of avian influenza that was previously confirmed in Tennessee. It is NOT the same as the China H7N9 virus that has impacted poultry and infected humans in Asia. The flock of 55,000 chickens is located in the Mississippi flyway, within three kilometers of the first Tennessee case. Samples from the affected flock, which displayed signs of illness and experienced increased mortality, were tested at Tennessee’s Kord Animal Health Diagnostic Laboratory and confirmed at the APHIS National Veterinary Services Laboratories (NVSL) in Ames, Iowa. USDA is working with the Tennessee Department of Agriculture on the joint incident response. State officials quarantined the affected premises, and depopulation has begun. Federal and State partners will conduct surveillance and testing of commercial and backyard poultry within a 10 kilometer (6.2 mile) radius of the site. The United States has the strongest AI surveillance program in the world, and USDA works with its partners to actively look for the disease in commercial poultry operations, live bird markets and in migratory wild bird populations. USDA will be informing the World Organization for Animal Health (OIE) as well as international trading partners of this finding. USDA also continues to communicate with trading partners to encourage adherence to OIE standards and minimize trade impacts. The Tennessee Department of Agriculture is working directly with poultry workers at the affected facilities to ensure that they are taking the proper precautions to prevent illness and contain disease spread. As a reminder, the proper handling and cooking of poultry and eggs to an internal temperature of 165 ˚F kills bacteria and viruses. Wild waterfowl are natural hosts for avian influenza, including H5 and H7, and can shed the virus without appearing sick. These low pathogenic viruses can mutate to highly pathogenic forms after introduction to poultry. People should avoid contact with sick/dead poultry or wildlife. If contact occurs, wash your hands with soap and water and change clothing before having any contact with healthy domestic poultry and birds. All bird owners, whether commercial producers or backyard enthusiasts, should continue to practice good biosecurity, prevent contact between their birds and wild birds, and report sick birds or unusual bird deaths to State/Federal officials, either through their state veterinarian or through USDA’s toll-free number at 1-866-536-7593. Additional information on biosecurity for commercial producers can be found at www.aphis.usda.gov/animalhealth/defendtheflock Information for backyard producers can be found at https://www.aphis.usda.gov/aphis/ourfocus/animalhealth/animal-disease-information/avian-influenza-disease/birdbiosecurity. Additional background Avian influenza (AI) is caused by an influenza type A virus which can infect poultry (such as chickens, turkeys, pheasants, quail, domestic ducks, geese and guinea fowl) and is carried by free flying waterfowl such as ducks, geese and shorebirds. AI viruses are classified by a combination of two groups of proteins: hemagglutinin or “H” proteins, of which there are 16 (H1–H16), and neuraminidase or “N” proteins, of which there are 9 (N1–N9). Many different combinations of “H” and “N” proteins are possible. Each combination is considered a different subtype, and can be further broken down into different strains. AI viruses are further classified by their pathogenicity (low or high)—the ability of a particular virus strain to produce disease in domestic chickens. *** Please share the following link with others who may be interested in these updates. Click here to subscribe to the VS Animal Health Stakeholder Registry. This link will also allow you to change or cancel your subscriptions. https://content.govdelivery.com/accounts/USDAAPHIS/bulletins/18dd7dc

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Second Case of HPAI Detected in Lincoln County Thursday, March 16, 2017 | 9:10am NASHVILLE — The state veterinarian confirms that a strain of highly pathogenic avian influenza (HPAI) has sickened a second commercial chicken breeder flock within the existing controlled quarantined zone in Lincoln County, Tenn. On March 14, samples taken from the flock tested positive for avian influenza. Following federal laboratory confirmation of H7N9 HPAI, officials began depopulation of the affected premises. This particular strain of avian influenza is the same that affected a commercial chicken flock earlier this month in Lincoln County. The two premises are less than two miles apart. Due to that close proximity, operators at the second premises were closely monitoring and regularly testing poultry for signs of avian influenza. The swift detection enabled immediate response. “Wild birds can carry this strain of avian influenza.” State Veterinarian Dr. Charles Hatcher said. “Given the close proximity of the two premises, this is not unexpected. We will continue to execute our plan, working quickly to prevent the virus from spreading further.” On March 4, the first confirmed detection of H7N9 HPAI occurred in a commercial poultry flock in Lincoln County. On March 8, a commercial poultry flock in Giles County tested positive for H7N9 low pathogenic avian influenza (LPAI). Due to the contagious nature of avian influenza and its threat to domesticated poultry, the best way to contain the virus is to depopulate affected flocks and then disinfect affected premises. Neither HPAI nor LPAI pose a risk to the food supply. No affected animals entered the food chain. Furthermore, the Tennessee Department of Health confirms that the risk of a human becoming ill with avian influenza during poultry illness incidents is very low. This virus is not the same as the China H7N9 virus affecting Asia and is genetically distinct. The primary difference between LPAI and HPAI is mortality rate in domesticated poultry. A slight change to the viral structure can make a virus deadly for birds. Avian influenza virus strains often occur naturally in wild migratory birds without causing illness in those birds. With LPAI, domesticated chickens and turkeys may show little or no signs of illness. However, HPAI is often fatal for domesticated poultry. State and federal officials continue to monitor and test poultry located in the areas immediately surrounding the three affected premises. No other flocks have shown signs of illness. The state veterinarian has issued a poultry health advisory for Tennessee and recommends the following: Closely observe your poultry flock. Report a sudden increase in the number of sick birds or bird deaths to the state veterinarian’s office at 615- 837-5120 and/or USDA at 1-866-536-7593. Avoid transporting or commingling birds. Avoid poultry exhibitions, shows or sales. Prevent contact with wild birds. Practice good biosecurity with your poultry. Enroll in the National Poultry Improvement Plan. Follow Tennessee’s avian influenza updates and access resources for producers and consumers. The state veterinarian and staff are focused on animal health and disease prevention. Each year, the Kord Animal Health Diagnostic Laboratory tests approximately 22,000 samples from poultry for avian influenza. Since March 3, the lab has tested more than 1,500 samples. - See more at: https://www.tn.gov/agriculture/news/49265#sthash.Z55vxdth.dpuf

Second Case of HPAI Detected in Lincoln County Thursday, March 16, 2017 | 9:10am NASHVILLE — The state veterinarian confirms that a strain of highly pathogenic avian influenza (HPAI) has sickened a second commercial chicken breeder flock within the existing controlled quarantined zone in Lincoln County, Tenn. On March 14, samples taken from the flock tested positive for avian influenza. Following federal laboratory confirmation of H7N9 HPAI, officials began depopulation of the affected premises. This particular strain of avian influenza is the same that affected a commercial chicken flock earlier this month in Lincoln County. The two premises are less than two miles apart. Due to that close proximity, operators at the second premises were closely monitoring and regularly testing poultry for signs of avian influenza. The swift detection enabled immediate response. - See more at: https://www.tn.gov/agriculture/news/49265#sthash.Z55vxdth.dpuf

Fresh/Frozen poultry and poultry products derived from birds originating from, slaughtered, processed, or shipped from Madison Country and Jackson Country in the State of Alabama on or after March 4, 2017. Restrictions are in place because these countries are within the 10Km Control Zone associated with the March 4, 2017 Lincoln Country, TN outbreak.* https://www.fsis.usda.gov/wps/portal/fsis/topics/international-affairs/exporting-products/export-library-requirements-by-country/Chile

The recent announcement of H7N9 detection in southern Tennessee has led to bans of poultry products iin nothern Alabama (Madison and Jackson Counties) Increased surveillance in this counties has led to confirmations in Madison Co (site of backyard farm) and Jackson County (site of flea market in Scottsboro and site of originating backyard farm in Hollywood).

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Avian flu confirmed in chickens in three North Alabama counties Mar 14, 2017 Updated 5 min ago 0 (Image via ABC News) Alabama agriculture officials said they are investigating three cases of avian flu found in chickens in North Alabama. Testing conducted indicated positive cases in Lauderdale County, northern Madison County and Scottsboro, officials said Tuesday morning. A manufacturing facility in Lauderdale County, a backyard chicken flock in Madison County and chicken found at a Scottsboro flea market all tested positive for the flu, state agriculture commissioner John McMillan said in a news conference. McMillan said they had been preparing for possible cases to show up in the state. The agriculture department has been preparing for flu to pop up since cases were confirmed in Lincoln and Giles counties in Tennessee. "Really what we've done is plan our work, and now we're working our plan," McMillan said. That plan includes heavily testing chickens everywhere from manufacturing facilities to backyard flocks and flea markets, McMillan said. The source of the flu is feces from wild waterfowl, officials said. Officials did say the cases did not present a food safety issue. Officials say the U.S. Department of Agriculture will confirm their tests. http://www.waaytv.com/appnews/avian-flu-confirmed-in-chickens-in-three-north-alabama-counties/article_19642774-08d2-11e7-b5b9-5365dbfc3861.html

| Tue Mar 14, 2017 | 12:02pm EDT Bird flu infects Alabama poultry, likely low pathogenic -officials By Tom Polansek | CHICAGO Bird flu has infected poultry at three sites in northern Alabama shortly after being found at two farms in neighboring Tennessee, and more chickens have been culled to contain the virus, state and industry officials in Alabama said on Tuesday. The cases in Alabama are suspected to be the less dangerous form of the disease, known as low pathogenic, because the infected flocks did not have high levels of mortality, said Ray Hilburn, associate director of the Alabama Poultry and Egg Association, an industry group. The flocks were near the spot in southern Tennessee where the U.S. Department of Agriculture confirmed on March 5 the nation's first case of highly pathogenic flu in commercial poultry in more than a year. Days later, Tennessee said it had detected low-pathogenic flu at another chicken farm nearby. Highly pathogenic bird flu is often fatal for domesticated poultry and led to the deaths of about 50 million birds, mostly egg-laying hens, in the United States in 2014 and 2015. The less-serious low pathogenic flu form can cause coughing, depression and other symptoms in birds. The spread of highly pathogenic flu could represent a financial blow for poultry operators such as Tyson Foods Inc and Pilgrim's Pride Corp because it would kill more birds or require flocks to be culled. It also would trigger more import bans from other countries, after South Korea, Japan and other nations limited imports following the highly pathogenic case in Tennessee. Alabama has not received any definitive test results that show its cases are highly pathogenic, said Amy Belcher, spokeswoman for the Alabama Department of Agriculture and Industries. No epidemiological connections have been made between the cases in Tennessee and Alabama, she added. Belcher declined to discuss culling of the birds ahead of a news conference on bird flu, or avian influenza (AI), in the state on Tuesday. Hilburn said infected birds had been culled but did not know how many. He said one case in Alabama was at a commercial breeding facility for chickens raised for meat and one involved a backyard flock. ALSO IN U.S. Blizzard hits northeast U.S. grounding flights, closing schools Republicans on defense after report shows millions would lose insurance "As soon as they find out that its possibly any type of AI, they're going to get rid of the birds," Hilburn said. "They don't take a chance on anything." Health officials have said the risk of bird flu spreading to people from poultry or making food unsafe was low. (Reporting by Tom Polansek; Editing by Chizu Nomiyama and Frances Kerry) http://www.reuters.com/article/us-health-birdflu-usa-idUSKBN16L1UX

LIVE Feed http://www.wsfa.com/story/34811711/watch-live-al-agriculture-officials-discuss-avian-influenza-findings The Alabama Department of Agriculture and Industries will hold a news conference at 11 a.m. to discuss the findings of avian influenza in poultry in north Alabama. WSFA will carry this press conference LIVE and you can click here to watch live on WSFA.com. Mobile users click here to watch live or watch live on the WSFA 12 News app. Click here to download the app. In the WSFA 12 News app, first click on the menu rail button in the upper left corner. Then click the LIVE EVENTS button under CATEGORIES in the menu rail. Tens of thousands of chickens were destroyed at a Tennessee chicken farm due to a bird flu outbreak in early March. Authorities did not identify the farm where the chickens were destroyed, saying only that it is located in the state’s Lincoln County, which is just west of Chattanooga and borders Alabama.

Three More H7N9 Farms Alabama Montgomery, Ala. —The Alabama Department of Agriculture and Industries will host a press conference today to discuss three findings of avian influenza in poultry in north Alabama. This press conference is open to the media. Following the press conference, media representatives will have the opportunity to speak with department personnel, poultry industry experts and other representatives listed below. WHO: Alabama Department of Agriculture and Industries (ADAI)WHAT: Press conference to discuss findings of avian influenza in AlabamaWHEN: Tuesday, March 14, 2017 at 11 a.m. CSTWHERE: Richard Beard Building Emergency Operations Center 1445 Federal Drive Montgomery, AL 36107

CDC warns women about Zika-infected semen Alan Gomez , USA TODAYPublished 4:51 p.m. ET March 13, 2017 | Updated 7 hours ago CLOSE Local transmission of the Zika virus in Florida may have occurred as early as June 15 of last year.USA TODAY (Photo: Vanderlei Almeida, AFP/Getty Images) 11CONNECTTWEETLINKEDIN 1COMMENTEMAILMORE MIAMI — Women beware: if you're looking for a sperm donor, make sure you know where he's from. The Centers for Disease Control and Prevention on Monday issued a warning that more people in South Florida's tri-county area — which includes Miami-Dade, Broward and Palm Beach counties — may have been exposed to the Zika virus than previously thought. And since the virus can remain in semen for up to three months, CDC officials said women who are pregnant or planning to get pregnant from donated sperm should consult with their doctors. The officials said they have not recorded a single case of a woman or her fetus contracting Zika through donated sperm or through a blood transfusion - blood donations can be screened for Zika, sperm donations cannot. But the CDC officials said their continuing Zika studies found that more people throughout South Florida may have been exposed to the virus, since so many local residents cross county lines on a daily basis. Denise Jamieson, incident commander for the CDC's Zika emergency response, said that means there could be plenty of men who made contributions to the area's 12 sperm banks who had no idea they were exposed to the virus. "Some of the semen that was collected and stored may still be at risk for transmitting Zika," Jamieson said. "Some people in the area may not realize that they were at risk." Zika became a nightmare for Miami last year when the city earned the dubious distinction of the first in the U.S. to experience active transmission of the virus, which can cause devastating birth defects in babies born to women infected while pregnant. The Florida Department of Health estimates that 279 people acquired the virus in the state in 2016, most of them in Miami-Dade County. The virus, which originated in Brazil and is transmitted by the aedes aegypti mosquito, has also been detected in people in 49 U.S. states, mostly from Americans who contract the virus when traveling to countries where the virus is more prevalent. Florida leads the way with 1,095 travel-related cases, followed by New York with 1,009 cases and California with 431, according to CDC data. The U.S. territory of Puerto Rico has seen far more cases, with 36,967 people infected. Read more: Texas reports first case of locally transmitted Zika A year later, Brazil town that spawned Zika struggles with virus Large section of Miami Beach cleared of Zika virus Zika virus 'not controllable': CDC director's grim warning The CDC had previously issued travel warnings for sections of Miami-Dade County where local transmissions were active. Those warnings were lifted as mosquito season died down in late 2016. The last confirmed case of locally-transmitted Zika occurred on Dec. 21. But with winter coming to an end and mosquito season right around the corner, health officials are preparing to battle more Zika cases this summer. So many people living in the U.S. have already contracted the virus that former CDC Director Thomas Frieden warned last year that the virus was "not controllable" with current technologies. On Monday, Jamieson gave a more optimistic assessment, saying that the virus is "not necessarily" endemic and that it could fade away, just as other mosquito-borne viruses have done in recent years. "We're on the lookout for additional cases of Zika," she said. But, "if you look at dengue and chikungunya, (they give) some indication that we may expect small pockets of local transmission." http://www.usatoday.com/story/news/2017/03/13/cdc-warns-women-zika-infected-donated-semen/99135478/

Mar 13, 5:07 PM EDT CDC: DON'T DONATE SPERM IN 3 FLORIDA COUNTIES DUE TO ZIKA BY MIKE STOBBEAP MEDICAL WRITER NEW YORK (AP) -- U.S. health officials say men from three Florida counties shouldn't donate sperm because of the risk of spreading Zika. The guidance had previously applied to Miami-Dade County, the only place in Florida where there's evidence the virus was spread by mosquitoes. But infections were reported in people in South Florida who said they hadn't been in that county. So the guidance was extended Monday to two counties north of Miami - Broward and Palm Beach. The advice applies to men who lived or traveled in those counties since June 15. Zika is mainly spread by mosquito bites. It can also be spread through sex. The virus can remain in semen for months. Most infected people don't get sick. But infection during pregnancy can lead to birth defects. http://hosted.ap.org/dynamic/stories/U/US_MED_ZIKA_SPERM_DONATION?SITE=AP&SECTION=HOME&TEMPLATE=DEFAULT

Align Segment-ID Name Score E-Value Identity EPI952801 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 829/829 (100%) EPI952643 A/chicken/Korea/H903/2017 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 828/829 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 826/830 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 822/830 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 822/830 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 822/830 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 822/830 (99%) EPI909470 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 821/830 (98%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 821/830 (98%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 816/824 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 816/824 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 816/824 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 816/824 (99%) EPI909448 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909440 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909424 A/chicken/Voronezh/20/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909416 A/chicken/Voronezh/19/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909408 A/chicken/Voronezh/18/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909400 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909392 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI909384 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 819/830 (98%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 815/824 (98%) EPI909464 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 818/830 (98%) EPI909456 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 818/830 (98%) EPI888092 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI869813 A/duck/France/161108h/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 818/830 (98%) EPI860405 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 818/830 (98%) EPI859657 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 818/830 (98%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 814/824 (98%) EPI942947 A/chicken/Wales/000023/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 817/830 (98%) EPI909432 A/turkey/Rostov/11/2017 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 817/830 (98%) EPI909368 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 817/830 (98%) EPI881283 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 817/830 (98%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 817/830 (98%) EPI860397 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 817/830 (98%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 813/824 (98%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 813/824 (98%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 813/824 (98%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 813/824 (98%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 813/824 (98%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 813/824 (98%) EPI860499 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 811/822 (98%) EPI942939 A/turkey/England/003778/2017 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 816/830 (98%) EPI887472 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 816/830 (98%) EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 810/821 (98%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 810/821 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 812/824 (98%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 812/824 (98%) EPI881278 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 812/825 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 816/831 (98%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1447.0 0.000000e+00 809/824 (98%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 808/821 (98%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 808/821 (98%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 808/821 (98%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 808/821 (98%) EPI869947 A/herring gull/Poland/84/2016 (A/H5N8) segment 8 (NS) 1439.7 0.000000e+00 802/813 (98%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1439.7 0.000000e+00 807/821 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1439.7 0.000000e+00 809/823 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 814/831 (97%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 814/831 (97%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 813/831 (97%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1428.6 0.000000e+00 807/823 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 807/825 (97%)

Align Segment-ID Name Score E-Value Identity EPI952791 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI952640 A/chicken/Korea/H903/2017 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI718527 A/Anas platyrhynchos/Belgium/17330cls42/2013 (A/H5N2) segment 5 (NP) 2599.4 0.000000e+00 1467/1497 (97%) EPI617996 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP) 2588.3 0.000000e+00 1465/1497 (97%) EPI858845 A/painted stork/India/10CA03/2016 (A/H5N8) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI809357 A/pigeon/Egypt/S10409A/2014 (A/H9N2) segment 5 (NP) 2538.4 0.000000e+00 1457/1498 (97%) EPI438282 A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI601644 A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI601635 A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI703477 A/duck/Yunan/V286/2012 (A/H1N2) segment 5 (NP) 2520.0 0.000000e+00 1452/1496 (97%) EPI942171 A/duck/Ganzhou/GZ5/2015 (A/H4N6) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI683033 A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI683032 A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI601705 A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI836615 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI836607 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI823757 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI823749 A/wild duck/Tyva/35/2016 (A/H5N8) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI823461 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI773758 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI618038 A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI618025 A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI703486 A/duck/Anhui/FA258/2013 (A/H1N3) segment 5 (NP) 2508.9 0.000000e+00 1450/1496 (96%) EPI703476 A/duck/Fujian/JF47/2014 (A/H1N1) segment 5 (NP) 2508.9 0.000000e+00 1450/1496 (96%) EPI446508 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP) 2507.0 0.000000e+00 1450/1497 (96%) EPI407865 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP) 2507.0 0.000000e+00 1450/1497 (96%) EPI809373 A/pigeon/Egypt/S10408B/2014 (A/H9N2) segment 5 (NP) 2505.2 0.000000e+00 1451/1498 (96%) EPI774515 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774476 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774387 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774311 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774303 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774260 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774186 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774169 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774160 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774122 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI774114 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI704373 A/duck/Mongolia/211/2015 (A/H3N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI704365 A/duck/Mongolia/208/2015 (A/H3N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI704357 A/duck/Mongolia/200/2015 (A/H3N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI704316 A/duck/Mongolia/167/2015 (A/H3N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI693707 A/duck/Mongolia/83/2015 (A/H3N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI693699 A/duck/Mongolia/20/2015 (A/H3N8) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI692489 A/duck/Hubei/S2213/2012 (A/H4N2) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI617968 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI891012 A/turnstone/Netherlands/1/2010 (A/H3N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI889592 A/mallard duck/Netherlands/78/2006 (A/H6N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI774507 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI774467 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI774395 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI774252 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI774243 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI774177 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI774151 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI704308 A/duck/Mongolia/154/2015 (A/H0N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI693715 A/duck/Mongolia/66/2015 (A/H10N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI600185 A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI600179 A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI600173 A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI600167 A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI600159 A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI590035 A/duck/Quang Ninh/220/2014 (A/H3N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI493029 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI470398 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI461630 A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI315101 A/mallard/PT/27972-B139/2007 (A/H9N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI683037 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618599 A/mallard/Sweden/107688/2009 (A/H10N1) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI617869 A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI601836 A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI596635 A/duck/Quang Ninh/14/2013 (A/H3N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI889556 A/greater white-fronted goose/Netherlands/9/2009 (A/H6N2) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI889265 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774499 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774491 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774459 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774435 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774419 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774411 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774379 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774370 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774345 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774319 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774227 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774219 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774211 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774194 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI774143 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI683042 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI683035 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI664214 A/duck/Jiangxi/01.14 NCJD034-P/2015(Mixed) (A/H5N6) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI617983 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI617758 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI599810 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI596424 A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI591918 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1448/1498 (96%) EPI470437 A/common teal/Hong Kong/MPM1670/2011 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI470415 A/duck/Yunnan/87/2007 (A/H7N6) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%) EPI372497 A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 5 (NP) 2488.6 0.000000e+00 1447/1497 (96%)

Align Segment-ID Name Score E-Value Identity EPI952769 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI952638 A/chicken/Korea/H903/2017 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI858843 A/painted stork/India/10CA03/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI377637 A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%) EPI614284 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%) EPI363454 A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%) EPI118295 A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA) 3707.3 0.000000e+00 2103/2151 (97%) EPI614286 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI363462 A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI296255 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI118321 A/duck/Jiang Xi/1850/2005 (A/H5N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI692567 A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI296257 A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI268977 A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI262643 A/aquatic bird/Korea/w79/2005 (A/H5N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI118289 A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA) 3690.7 0.000000e+00 2100/2151 (97%) EPI493025 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI363470 A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI262644 A/aquatic bird/Korea/w81/2005 (A/H5N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI262642 A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI140261 A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA) 3685.2 0.000000e+00 2099/2151 (97%) EPI890596 A/greater white-fronted goose/Netherlands/1/2012 (A/H1N1) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI773764 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI614298 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA) 3679.6 0.000000e+00 2099/2152 (97%) EPI268817 A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI262641 A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI118337 A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI749127 A/environment/Chongqing/02412/2012 (A/H5N1) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI387412 A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI363534 A/duck/Guizhou/2773/2006 (A/H6N2) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI326817 A/environment/Korea/CSM05/2004 (A/H3N1) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI316751 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI296253 A/wild duck/Korea/CW09/2005 (A/H1N1) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI268960 A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 3 (PA) 3674.1 0.000000e+00 2097/2151 (97%) EPI837836 A/environment/Korea/W267/2007 (A/H7N4) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI717886 A/environment/Hubei-Jinzhou/02/2010 (A/H6N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI614278 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI599172 A/migratory duck/Jiangxi/21248/2009 (A/H10N8) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI538470 A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI538433 A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI387502 A/canvasback/Mongolia/2-69/2007 (A/H10) segment 3 (PA) 3668.6 0.000000e+00 2094/2148 (97%) EPI360053 A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI345928 A/whistling swan/Shimane/580/2002 (A/H5N3) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI307313 A/aquatic bird/Korea/MA81/2007 (A/H5N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI307311 A/mallard duck/Korea/6L/2007 (A/H7N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI262663 A/aquatic bird/Korea/w222/2007 (A/H5N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI258967 A/aquatic bird/Korea/w164/2007 (A/H5N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI258966 A/aquatic bird/Korea/w163/2007 (A/H5N2) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI131894 A/sharp-tailed sandpiper/Australia/10/2004 (A/H11N9) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI69246 A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI891127 A/mallard duck/Netherlands/13/2013 (A/H7N7) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI889396 A/mallard duck/Netherlands/1/2014 (A/H10N7) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI774513 A/chicken/Netherlands/15007212/15 (A/H10N7) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI687186 A/chicken/Scotland/532/2016 (A/H5N1) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI540395 A/duck/Bangladesh/1293/2008 (A/H6N1) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI335409 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI268979 A/duck/Hunan/3748/2004 (A/H6N8) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI268962 A/duck/Guangxi/1455/2004 (A/H6N5) segment 3 (PA) 3663.0 0.000000e+00 2095/2151 (97%) EPI614294 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI540323 A/duck/Bangladesh/1575/2009 (A/H3N8) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI540315 A/duck/Bangladesh/1576/2009 (A/H3N8) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI540307 A/duck/Bangladesh/1574/2009 (A/H3N8) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI363890 A/duck/Guangxi/1330/2007 (A/H6N8) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI363882 A/duck/Guangxi/890/2007 (A/H6N8) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI307308 A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI268961 A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI262667 A/aquatic bird/Korea/w234/2007 (A/H5N2) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI262666 A/aquatic bird/Korea/w231/2007 (A/H5N2) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI258965 A/aquatic bird/Korea/w161/2007 (A/H5N2) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI244497 A/mallard/Korea/GH170/2007 (A/H7N7) segment 3 (PA) 3657.5 0.000000e+00 2094/2151 (97%) EPI387406 A/whooper swan/Mongolia/1-25/2007 (A/H3N8) segment 3 (PA) 3655.6 0.000000e+00 2091/2147 (97%) EPI599169 A/migratory duck/Jiangxi/593/2005 (A/H10N8) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI361728 A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 3 (PA) 3651.9 0.000000e+00 2091/2148 (97%) EPI307312 A/aquatic bird/Korea/MA44/2007 (A/H7N3) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI268981 A/duck/Hunan/1469/2002 (A/H6N8) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI262658 A/aquatic bird/Korea/w211/2007 (A/H5N2) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI262657 A/aquatic bird/Korea/w208/2007 (A/H5N2) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI230012 A/red crested pochard/Mongolia/1915/2006 (A/H3N6) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI182382 A/Baikal Teal/Hongze/14/2005 (A/H11N9) segment 3 (PA) 3651.9 0.000000e+00 2093/2151 (97%) EPI692375 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI599168 A/duck/Jiangxi/2039/2005 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI540291 A/duck/Bangladesh/1798/2010 (A/H3N6) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI487606 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI401299 A/wild duck/Korea/CSM20-5/2009 (A/H4N6) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI268958 A/duck/Hunan/748/2005 (A/H6N5) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI262660 A/aquatic bird/Korea/w217/2007 (A/H5N2) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI262656 A/aquatic bird/Korea/w206/2007 (A/H5N2) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI244544 A/mallard/Korea/GH171/2007 (A/H7N7) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI244507 A/magpie/Korea/YJD174/2007 (A/H7N7) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI180351 A/duck/Primorie/2621/01 (A/H5N2) segment 3 (PA) 3646.4 0.000000e+00 2094/2153 (97%) EPI262654 A/aquatic bird/Korea/w204/2007 (A/H5N2) segment 3 (PA) 3642.7 0.000000e+00 2091/2151 (97%) EPI837826 A/environment/Korea/W109/2006 (A/H7N7) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI774986 A/duck/Shanghai/120-1/2009 (A/H3N8) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI599149 A/migratory duck/Jiangxi/9334/2005 (A/H10N6) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI568314 A/duck/Jiangxi/501/2006 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI568311 A/duck/Jiangxi/468/2006 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI568308 A/duck/Jiangxi/422/2006 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI568305 A/duck/Jiangxi/386/2006 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI568267 A/duck/Jiangxi/302/2006 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI568264 A/duck/Jiangxi/13946/2005 (A/H10N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%)

Align Segment-ID Name Score E-Value Identity EPI952760 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI952637 A/chicken/Korea/H903/2017 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI909466 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2256/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI869807 A/duck/France/161108h/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4084.1 0.000000e+00 2253/2274 (99%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4078.5 0.000000e+00 2250/2271 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4078.5 0.000000e+00 2252/2274 (99%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4078.5 0.000000e+00 2252/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4073.0 0.000000e+00 2251/2274 (98%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4073.0 0.000000e+00 2251/2274 (98%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4069.3 0.000000e+00 2250/2274 (98%) EPI909442 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%) EPI909426 A/turkey/Rostov/11/2017 (A/H5N8) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4065.6 0.000000e+00 2249/2274 (98%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4065.6 0.000000e+00 2249/2274 (98%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4063.7 0.000000e+00 2249/2274 (98%) EPI942941 A/chicken/Wales/000023/2016 (A/H5N8) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4061.9 0.000000e+00 2248/2274 (98%) EPI909418 A/chicken/Voronezh/20/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI909410 A/chicken/Voronezh/19/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI909402 A/chicken/Voronezh/18/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI909394 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI909386 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI909378 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI942933 A/turkey/England/003778/2017 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4049.0 0.000000e+00 2246/2275 (98%) EPI909434 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI869943 A/herring gull/Poland/84/2016 (A/H5N8) segment 2 (PB1) 4001.0 0.000000e+00 2208/2229 (99%) EPI888086 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 2 (PB1) 3958.5 0.000000e+00 2183/2203 (99%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3912.3 0.000000e+00 2222/2274 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3884.6 0.000000e+00 2218/2275 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3862.5 0.000000e+00 2214/2275 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%)

Align Segment-ID Name Score E-Value Identity EPI952757 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI952636 A/chicken/Korea/H903/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2269/2281 (99%) EPI858841 A/painted stork/India/10CA03/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI773754 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI774315 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI774198 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI836611 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI823745 A/wild duck/Tyva/35/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774495 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774455 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774447 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774439 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774349 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774332 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774323 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774274 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774215 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774207 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774190 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI774127 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 1 (PB2) 4095.1 0.000000e+00 2259/2280 (99%) EPI858833 A/duck/India/10CA01/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI836603 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI823753 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774487 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774480 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774431 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774416 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774407 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774399 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774375 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774366 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774358 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774341 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774291 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774264 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774248 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI774139 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 1 (PB2) 4089.6 0.000000e+00 2258/2280 (99%) EPI823457 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774463 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774423 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774307 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774299 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774283 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774256 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774239 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774231 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774223 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774173 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774110 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 1 (PB2) 4084.1 0.000000e+00 2257/2280 (98%) EPI774503 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%) EPI774472 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%) EPI774383 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%) EPI774182 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%) EPI774147 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%) EPI774118 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 1 (PB2) 4078.5 0.000000e+00 2256/2280 (98%) EPI774391 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%) EPI774165 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 1 (PB2) 4073.0 0.000000e+00 2256/2281 (98%) EPI774156 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 1 (PB2) 4073.0 0.000000e+00 2255/2280 (98%) EPI909465 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 1 (PB2) 4039.7 0.000000e+00 2249/2280 (98%) EPI704256 A/duck/Mongolia/30/2015 (A/H3N8) segment 1 (PB2) 3967.7 0.000000e+00 2237/2281 (98%) EPI704541 A/duck/Mongolia/742/2015 (A/H10N7) segment 1 (PB2) 3962.2 0.000000e+00 2236/2281 (98%) EPI704419 A/duck/Mongolia/655/2015 (A/H2N3) segment 1 (PB2) 3962.2 0.000000e+00 2236/2281 (98%) EPI704280 A/duck/Mongolia/118/2015 (A/H4N6) segment 1 (PB2) 3962.2 0.000000e+00 2236/2281 (98%) EPI704385 A/duck/Mongolia/482/2015 (A/H2N3) segment 1 (PB2) 3956.6 0.000000e+00 2235/2281 (97%) EPI704403 A/duck/Mongolia/521/2015 (A/H3N8) segment 1 (PB2) 3923.4 0.000000e+00 2229/2281 (97%) EPI469157 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 1 (PB2) 3895.7 0.000000e+00 2224/2281 (97%) EPI806627 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 1 (PB2) 3873.5 0.000000e+00 2222/2283 (97%) EPI823896 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI617754 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI704288 A/duck/Mongolia/127/2015 (A/H4N6) segment 1 (PB2) 3845.8 0.000000e+00 2216/2282 (97%) EPI704264 A/duck/Mongolia/101/2015 (A/H4N6) segment 1 (PB2) 3845.8 0.000000e+00 2216/2282 (97%) EPI683169 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI683168 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI704394 A/duck/Mongolia/520/2015 (A/H1N1) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI909433 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 1 (PB2) 3823.7 0.000000e+00 2211/2281 (96%) EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 3807.1 0.000000e+00 2209/2282 (96%) EPI845250 A/environment/Sichuan/315068/2015 (A/H6N2) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%) EPI692341 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%) EPI692333 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 1 (PB2) 3807.1 0.000000e+00 2208/2281 (96%) EPI909457 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI909449 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI845251 A/environment/Sichuan/315069/2015 (A/H6N2) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI584398 A/duck/Hunan/S3137/2009 (A/H10N8) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI527588 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI335395 A/aquatic bird/Korea/CN9/2009 (A/H6N8) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 3797.8 0.000000e+00 2206/2281 (96%) EPI909417 A/chicken/Voronezh/20/2017 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI909409 A/chicken/Voronezh/19/2017 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI909401 A/chicken/Voronezh/18/2017 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI909385 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI909377 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI881279 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI869942 A/herring gull/Poland/84/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI860399 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI859660 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%) EPI527576 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 1 (PB2) 3796.0 0.000000e+00 2206/2281 (96%)

Align Segment-ID Name Score E-Value Identity EPI952800 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI952642 A/chicken/Korea/H903/2017 (A/H5N8) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI931201 A/mute swan/Czech Republic/2031-17/2017 (H5N5) (A/H5N5) segment 7 (MP) 1779.4 0.000000e+00 975/981 (99%) EPI909463 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI909455 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 972/981 (99%) EPI942946 A/chicken/Wales/000023/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI909469 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI860404 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI859654 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI931196 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI930842 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI919638 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI917482 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI916524 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI916387 A/mute swan/Czech Republic/653-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 971/981 (98%) EPI888279 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 7 (MP) 1755.4 0.000000e+00 970/981 (98%) EPI942938 A/turkey/England/003778/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI909447 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI909439 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI909367 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI881282 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 969/979 (98%) EPI881277 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 969/979 (98%) EPI869946 A/herring gull/Poland/84/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI860498 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI860396 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI887471 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 970/981 (98%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 968/978 (98%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1749.9 0.000000e+00 970/982 (98%) EPI916606 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 969/981 (98%) EPI909431 A/turkey/Rostov/11/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI888091 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI909423 A/chicken/Voronezh/20/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI909415 A/chicken/Voronezh/19/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI909407 A/chicken/Voronezh/18/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI909399 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI909391 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI909383 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1737.0 0.000000e+00 969/983 (98%)

Align Segment-ID Name Score E-Value Identity EPI952799 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI952641 A/chicken/Korea/H903/2017 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1400/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1400/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1397/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1397/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1396/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1399/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI909430 A/turkey/Rostov/11/2017 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI942937 A/turkey/England/003778/2017 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI909454 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI869939 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI869935 A/mute swan/Poland/108/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI869933 A/chicken/Poland/79A/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI942945 A/chicken/Wales/000023/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI931111 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI916386 A/mute swan/Czech Republic/653-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI909462 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI909446 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI909438 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI909406 A/chicken/Voronezh/18/2017 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI909398 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI888278 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI881900 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI917481 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1394/1406 (99%) EPI919637 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI916504 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI909422 A/chicken/Voronezh/20/2017 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI909414 A/chicken/Voronezh/19/2017 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI909390 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI909382 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI887470 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI881902 A/mute swan/Croatia/15/2017 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI873213 A/chicken/Croatia/103/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI869934 A/chicken/Poland/85A/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1395/1407 (99%) EPI861014 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI861010 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI860510 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI860403 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI860395 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI859655 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI909366 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 6 (NA) 2529.2 0.000000e+00 1393/1406 (99%) EPI931195 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1393/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1393/1406 (99%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI952782 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI952639 A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI881901 A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1694/1705 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 3077.6 0.000000e+00 1691/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI930838 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI919636 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI887468 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1692/1705 (99%) EPI869929 A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI930843 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI873624 A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI888277 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI869926 A/domestic goose/Poland/72/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI931194 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI931110 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI881899 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1690/1705 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1676/1686 (99%) EPI916503 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1689/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI917480 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI869927 A/chicken/Poland/79A/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI860509 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%)

Isolate detail Isolate name: A/mallard duck/Korea/WA137/2017 Isolate ID: EPI_ISL_254745 Passage details/history: c1 Type: A / H5N8 Lineage: Sample information Collection date: 2017-01-24 Host Anas platyrhynchos Additional host information: Domestic status: Wild Is vaccinated: Location: Korea, Republic of / Chungcheongnam-do Additional location information: Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Avian disease division, Animal and Plant Quarantine Agency Sample ID given by the sample provider: Address: Avian disease division, Animal and Plant Quarantine Agency Hyeoksin 8-ro 39660 Gimchen-si Korea, Republic of Submitting lab: Animal and Plant Quarantine Agency (QIA) Sample ID given by the submitting laboratory: Authors: Youn-Jeong, Lee; Eun-Kyoung, Lee; Byung-Min, Song; Yu-Na, Lee Address: Animal and Plant Quarantine Agency (QIA) Anyangro 175 Anynagsi Korea, Republic of Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/mallard duck/Korea/WA137/2017 2308 EPI952757 PB1 A/mallard duck/Korea/WA137/2017 2284 EPI952760 PA A/mallard duck/Korea/WA137/2017 2200 EPI952769 HA A/mallard duck/Korea/WA137/2017 1776 EPI952782 NP A/mallard duck/Korea/WA137/2017 1529 EPI952791 NA A/mallard duck/Korea/WA137/2017 1424 EPI952799 MP A/mallard duck/Korea/WA137/2017 1012 EPI952800 NS A/mallard duck/Korea/WA137/2017 855 EPI952801 Submitter information Submitter: Lee, Youn-Jeong Submission Date: 2017-03-10 Last modifier: Lee, Youn-Jeong Last modified: 2017-03-10 Address: Animal and Plant Quarantine Agency (QIA) Anyangro 175 Anynagsi Korea, Republic of

H5 from 2017 H5N8 sequences from a mallard and chicken in South Korea match H5N8 H5 in Europe,

Bird flu found at second commercial chicken farm in TN 47 mins ago by ClarksvilleNow.com EMAIL FACEBOOK TWITTER LINKEDIN GILES COUNTY, Tenn. (WKRN) – Another flock of chickens in Tennessee has tested positive for the bird flu. A state veterinarian confirms a low pathogenic avian influenza (LPAI) was found at a commercial poultry breeding operation in Giles County. Routine screening completed on March 6 revealed the virus was present and it as then confirmed in both state and federal laboratories. Another strain of bird flu was found at a Tyson Foods supplier earlier this week. The affected block was depopulated and buried, and the area is under quarantine. Domesticated poultry within 6.2 miles of the site are also under quarantine and being tested. To date, all additional samples have tested negative for avian influenza and no other flocks within the area have shown signs of illness. “This is why we test and monitor for avian influenza,” State Veterinarian Dr. Charles Hatcher said. “When routine testing showed a problem at this facility, the operators immediately took action and notified our lab. That fast response is critical to stopping the spread of this virus.” While the company affected wasn’t identified, officials said it is not Tyson Foods, which was affected earlier this week and had to euthanize 73,500 chickens in Lincoln County. Officials also said Thursday they do not believe one premises sickened the other. At Tyson Foods, veterinarians detected another strain of the flu, highly pathogenic avian influence (HPAI). State officials say the primary difference between LPAI and HPAI is mortality rate in domesticated poultry. Avian influenza virus strains often occur naturally in wild migratory birds without causing illness in those birds. With LPAI, domesticated chickens and turkeys may show little or no signs of illness. However, HPAI is often fatal for domesticated poultry. http://clarksvillenow.com/local/bird-flu-found-at-second-commercial-chicken-farm-in-tn/