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As of Nov. 21, 2016 106 confirmed travel-related Zika cases in Georgia

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Travel-associated Zika cases confirmed in Arizona: 53 http://www.azdhs.gov/preparedness/epidemiology-disease-control/mosquito-borne/index.php#zika-home

Travel-associated Zika cases confirmed in Arizona: 53

Alabama Residents Tested for Zika Virus as of November 22, 2016 Number of Submissions Positive Test Results for Zika or Flavivirus, unspecified (likely Zika) 364 39

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Evira confirms: Bird flu spread to Mariehamn PUBLISHED FÖR UNGEFÄR 8 TIMMAR SEDAN. UPDATEDFÖR UNGEFÄR 7 TIMMAR SEDAN SHARE: Image: Yle JULIE EBBE HELSINKI The dead peacocks and sick chickens that were found in the green area Lilla Holmen in Mariehamn carried a highly pathogenic bird flu. What type of virus there is the question of being investigated by the Food Safety Authority Evira. Last week found four dead peacocks and several sick chickens at Lilla Holmen. Several birds have since fallen ill and some have also died. The rest of the chickens at Lilla Holmen killed to prevent the spread of infection. Since bird flu is highly pathogenic Evira has established a restricted zone extending ten kilometers beyond Lilla Holmen. Within the zone made additional checks on poultry farms and the movement of poultry and their products is limited. Evira is now investigating whether the birds at Lilla Holmen bar on the same type of virus, H5N8, which has been found in dead wild ducks that were found in Åland a week ago. Suspected bird flu should be reported If you suspect infection or encounters mass death of birds should immediately contact the municipal or länsveterinär. Evira recommends that you avoid touching dead birds without gloves and leaving sampling to the vet. H5N8 has not been found in humans and under the THL is the risk of infection is minimal. Overall meager infect avian flu to humans. Bird flu is contagious only in close contact with sick birds, not through food, eggs and meat as long as food is cooked properly. Agriculture and Forestry Ministry has stated that all poultry to be kept indoors at least until May.

The dead peacocks and sick chickens that were found in the green area Lilla Holmen in Mariehamn carried a highly pathogenic bird flu. What type of virus there is the question of being investigated by the Food Safety Authority Evira. https://svenska.yle.fi/artikel/2016/11/30/evira-bekraftar-fagelinfluensan-spridit-sig-till-mariehamn

Four dead peacocks - bird flu probably also in Mariehamn PUBLISHED FÖR 4 DAGAR SEDAN. SHARE:27 Image: Yle In Åland it looks as if the bird flu would have spread to Mariehamn. Four peacocks were found dead today in the green area Lilla Holmen in Mariehamn's eastern harbor. Two other peacocks were dying. Authorities suspect bird flu and have cordoned off the entire island for security reasons. The result of the flu samples should come early next week. Image: Yle H5N8 is the virus strain that has spread in Europe and which cause severe disease in poultry. No people have been infected by it. H5N8 viruses in wild ducks It is now clear that the dead wild ducks that have been found in Åland carrying the bird flu virus H5N8. The case in Åland's first H5N8 bird flu found in Finland. Finnish Food Safety Authority Evira is now establishing a restricted zone of ten kilometers around the sites where the birds were found, on Lemland and Vårdö. At poultry farms in the area are additional controls and the movement of poultry in the area is limited.

In Åland it looks as if the bird flu would have spread to Mariehamn. Four peacocks were found dead today in the green area Lilla Holmen in Mariehamn's eastern harbor. Two other peacocks were dying. Authorities suspect bird flu and have cordoned off the entire island for security reasons. https://svenska.yle.fi/artikel/2016/11/26/fyra-doda-pafaglar-fagelinfluensa-troligen-ocksa-i-mariehamn

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November 30, 2016 Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a Zika case count by county and information to keep Floridians informed and prepared. In order to keep the public informed, the department has posted our investigation process here. There are two new travel-related cases today with one in Osceola and one in Orange. There are four new locally acquired cases today. All four involve Miami-Dade County residents and the department is investigating to determine where exposure occurred. The total number of Zika cases reported in Florida as of today is 1,219. Infection Type Infection Count Travel-Related Infections of Zika 960 Locally Acquired Infections of Zika 244 Undetermined 15 Pregnant Women with Lab-Evidence of Zika 173 Note, these categories are not mutually exclusive and cannot be added together. Please visit our website to see the full list of travel-related cases by county. Recently, Governor Rick Scott announced that the department had not detected any additional local transmissions of Zika in the north portion of Miami Beach in more than 45 days. That portion of the zone has been lifted. The lifted area is about three miles, from 28th street to 63rd street. The remaining area of active Zika transmission in Miami Beach is about 1.5 square miles between 8th and 28th streets. The remaining area of active Zika transmission in Little River is about one square mile. DOH continues outreach and targeted testing in Miami-Dade County and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH believes ongoing transmission is only taking place within the identified area in Miami Beach and Little River in Miami-Dade County, see maps below. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. The timelines below are as of Nov. 23. Note: asymptomatic cases are not reflected as they do not have symptom on-set dates. click image above to enlarge click image above to enlarge click image above to enlarge The department is currently conducting 14 active investigations. The department has closed 38 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 10,620 people statewide. Florida currently has the capacity to test 5,810 people for active Zika virus and 5,055 for Zika antibodies. At Governor Scott’s direction, all county health departments now offer free Zika risk assessment and testing to pregnant women. Florida’s small case cluster is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted area in Miami-Dade County (see map below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should test all pregnant women who lived in, traveled to or whose partner traveled to Miami-Dade County after Aug. 1, 2016. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 173. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 7,743 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. click image above to enlarge click image above to enlarge About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote, and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov.

There are four new locally acquired cases today. All four involve Miami-Dade County residents and the department is investigating to determine where exposure occurred. http://www.floridahealth.gov/newsroom/2016/11/113016-zika-update.html

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November 30, 2016 Department of Health Daily Zika Update Contact: Communications [email protected] (850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the department will issue a Zika virus update each week day. Updates will include a Zika case count by county and information to keep Floridians informed and prepared. In order to keep the public informed, the department has posted our investigation process here. There are two new travel-related cases today with one in Osceola and one in Orange. There are four new locally acquired cases today. All four involve Miami-Dade County residents and the department is investigating to determine where exposure occurred. The total number of Zika cases reported in Florida as of today is 1,219. Infection Type Infection Count Travel-Related Infections of Zika 960 Locally Acquired Infections of Zika 244 Undetermined 15 Pregnant Women with Lab-Evidence of Zika 173 Note, these categories are not mutually exclusive and cannot be added together. Please visit our website to see the full list of travel-related cases by county. Recently, Governor Rick Scott announced that the department had not detected any additional local transmissions of Zika in the north portion of Miami Beach in more than 45 days. That portion of the zone has been lifted. The lifted area is about three miles, from 28th street to 63rd street. The remaining area of active Zika transmission in Miami Beach is about 1.5 square miles between 8th and 28th streets. The remaining area of active Zika transmission in Little River is about one square mile. DOH continues outreach and targeted testing in Miami-Dade County and mosquito abatement and reduction activities are also taking place around the locations that are being investigated. DOH believes ongoing transmission is only taking place within the identified area in Miami Beach and Little River in Miami-Dade County, see maps below. One case does not mean ongoing active transmission is taking place. DOH conducts a thorough investigation by sampling close contacts and community members around each case to determine if additional people are infected. If DOH finds evidence that active transmission is occurring in an area, the media and the public will be notified. The timelines below are as of Nov. 23. Note: asymptomatic cases are not reflected as they do not have symptom on-set dates. click image above to enlarge click image above to enlarge click image above to enlarge The department is currently conducting 14 active investigations. The department has closed 38 investigations. Information regarding the investigations can be found here. If investigations reveal additional areas of active transmission, the department will announce a defined area of concern. The department has conducted Zika virus testing for more than 10,620 people statewide. Florida currently has the capacity to test 5,810 people for active Zika virus and 5,055 for Zika antibodies. At Governor Scott’s direction, all county health departments now offer free Zika risk assessment and testing to pregnant women. Florida’s small case cluster is not considered widespread transmission, however, pregnant women are advised to avoid non-essential travel to the impacted area in Miami-Dade County (see map below). If you are pregnant and must travel or if you live or work in the impacted area, protect yourself from mosquito bites by wearing insect repellent, long clothing and limiting your time outdoors. According to CDC guidance, providers should test all pregnant women who lived in, traveled to or whose partner traveled to Miami-Dade County after Aug. 1, 2016. It is also recommended that all pregnant women who reside in or travel frequently to the area where active transmission is likely occurring be tested for Zika in the first and second trimester. Pregnant women in the identified area can contact their medical provider or their local county health department to be tested and receive a Zika prevention kit. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Additionally, the department is working closely with the Healthy Start Coalition of Miami-Dade County to identify pregnant women in the impacted areas to ensure they have access to resources and information to protect themselves. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Pregnant women can contact their local county health department for Zika risk assessment and testing hours and information. A Zika risk assessment will be conducted by county health department staff and blood and/or urine samples may be collected and sent to labs for testing. It may take one to two weeks to receive results. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms. The total number of pregnant women who have been or are being monitored is 173. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 7,743 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. For more information on DOH action and federal guidance, please click here. For resources and information on Zika virus, click here. click image above to enlarge click image above to enlarge About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote, and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov.

There are two new travel-related cases today with one in Osceola and one in Orange. There are four new locally acquired cases today. All four involve Miami-Dade County residents and the department is investigating to determine where exposure occurred. The total number of Zika cases reported in Florida as of today is 1,219. Infection Type Infection Count Travel-Related Infections of Zika 960 Locally Acquired Infections of Zika 244 Undetermined 15 Pregnant Women with Lab-Evidence of Zika 173 http://www.floridahealth.gov/newsroom/2016/11/113016-zika-update.html

Align Segment-ID Name Score E-Value Identity EPI864021 A/Iowa/32/2016 (A/H1N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI840051 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 8 (NS) 1532.0 0.000000e+00 835/838 (99%) EPI647626 A/swine/Michigan/A01104086/2015 (A/H0) segment 8 (NS) 1528.3 0.000000e+00 833/836 (99%) EPI855124 A/swine/Illinois/A01895418/2016 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI840016 A/swine/Arkansas/A02035008/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI839982 A/swine/Arkansas/A02024656/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI839939 A/swine/Oklahoma/A01944447/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI839874 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI838562 A/swine/Indiana/A01727685/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI753759 A/swine/Indiana/A01812189/2016 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI689988 A/swine/Indiana/A01812040/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI653018 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 8 (NS) 1526.5 0.000000e+00 834/838 (99%) EPI845481 A/swine/Indiana/A01812050/2015 (A/H1N2) segment 8 (NS) 1522.8 0.000000e+00 832/836 (99%) EPI653025 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 8 (NS) 1522.8 0.000000e+00 832/836 (99%) EPI845452 A/swine/Ohio/A01730712/2016 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI839958 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI839884 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI838522 A/swine/Iowa/A01727813/2015 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI837257 A/swine/Indiana/A01797599/2015 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI837162 A/swine/Indiana/A01812095/2015 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI778174 A/swine/Alabama/A01104091/2016 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI761975 A/swine/Indiana/A01812190/2016 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI653060 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI653039 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 8 (NS) 1517.2 0.000000e+00 831/836 (99%) EPI855174 A/swine/Illinois/A01895648/2016 (A/H1N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI840041 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI839900 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI839872 A/swine/Minnesota/A01567671/2015 (A/H1N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI839861 A/swine/Minnesota/A01567012/2014 (A/H1N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI839796 A/swine/Minnesota/A01567011/2014 (A/H1N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI855179 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI845544 A/swine/Illinois/A01894603/2016 (A/H1N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI839944 A/swine/Minnesota/A01567833/2015 (A/H1N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI838572 A/swine/Iowa/A01727251/2015 (A/H1N1) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI838567 A/swine/Illinois/A01896091/2015 (A/H1N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI816876 A/Minnesota/70/2016 (A/H1N2) segment 8 (NS) 1506.1 0.000000e+00 830/838 (99%) EPI845466 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI845418 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI816884 A/Wisconsin/71/2016 (A/H1N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI690494 A/swine/Wisconsin/A01104088/2015 (A/H1N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI845492 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI839997 A/swine/Oklahoma/A02076949/2015 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 830/839 (98%) EPI839933 A/swine/Oklahoma/A02025582/2015 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 830/839 (98%) EPI839889 A/swine/Oklahoma/A01770387/2015 (A/H1N2) segment 8 (NS) 1498.8 0.000000e+00 830/839 (98%) EPI854897 A/swine/Oklahoma/A01432269/2012 (A/H1N2) segment 8 (NS) 1495.1 0.000000e+00 828/837 (98%) EPI663612 A/swine/Nebraska/A01509530/2014 (A/H1N2) segment 8 (NS) 1495.1 0.000000e+00 828/837 (98%) EPI653951 A/swine/Nebraska/A01493792/2014 (A/H3N2) segment 8 (NS) 1495.1 0.000000e+00 828/837 (98%) EPI647619 A/swine/Nebraska/A014792599/2014 (A/H1N2) segment 8 (NS) 1495.1 0.000000e+00 828/837 (98%) EPI839910 A/swine/Nebraska/A01476672/2014 (A/H1N2) segment 8 (NS) 1489.5 0.000000e+00 827/837 (98%) EPI550013 A/swine/Texas/13TOSU0049/2013 (A/H1N2) segment 8 (NS) 1489.5 0.000000e+00 827/837 (98%) EPI446821 A/swine/Kentucky/12TOSU1053/2012 (A/H1N2) segment 8 (NS) 1489.5 0.000000e+00 827/837 (98%) EPI838494 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI647610 A/swine/Oklahoma/A01049501/2011 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI641653 A/swine/Kansas/A01290646/2013 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI603672 A/swine/Iowa/A01076157/2010 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI589915 A/swine/Iowa/A01049643/2011 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI585706 A/swine/Illinois/A01049872/2011 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI528436 A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI446900 A/swine/Kentucky/12TOSU1155/2012 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 827/838 (98%) EPI446895 A/swine/Kentucky/12TOSU1054/2012 (A/H1N2) segment 8 (NS) 1484.0 0.000000e+00 826/837 (98%) EPI647603 A/swine/Oklahoma/A01202413/2011 (A/H1N2) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI589942 A/swine/Iowa/A01049645/2011 (A/H1N2) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI585702 A/swine/Illinois/A01049871/2011 (A/H1N2) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI558116 A/Minnesota/33/2014 (A/H1N1) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI528487 A/swine/Texas/13TOSU0050/2013 (A/H1N1) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI526950 A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI446854 A/swine/Kentucky/12TOSU1052/2012 (A/H1N2) segment 8 (NS) 1478.4 0.000000e+00 826/838 (98%) EPI446813 A/swine/Kentucky/12TOSU1084/2012 (A/H1N2) segment 8 (NS) 1478.4 0.000000e+00 826/838 (98%) EPI443488 A/swine/Iowa/A01328942/2012 (A/H1N2) segment 8 (NS) 1478.4 0.000000e+00 825/837 (98%) EPI839924 A/swine/Nebraska/A01476438/2014 (A/H1N2) segment 8 (NS) 1472.9 0.000000e+00 824/837 (98%) EPI615674 A/swine/Oklahoma/A01202414/2011 (A/H1N2) segment 8 (NS) 1472.9 0.000000e+00 824/837 (98%) EPI615452 A/swine/Oklahoma/A01202417/2011 (A/H1N2) segment 8 (NS) 1472.9 0.000000e+00 824/837 (98%) EPI838537 A/swine/Kansas/A01377649/2015 (A/H3N2) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI663428 A/swine/Kansas/A01477353/2014 (A/H3N2) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI663408 A/swine/Nebraska/A01476165/2014 (A/H3N2) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI647614 A/swine/Oklahoma/A01202415/2011 (A/H1N2) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI641736 A/swine/Oklahoma/A01410195/2014 (A/H1N1) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI446845 A/swine/Kentucky/12TOSU1098/2012 (A/H1N2) segment 8 (NS) 1467.4 0.000000e+00 825/839 (98%) EPI220863 A/swine/Oklahoma/020734-2/2008 (A/H1N2) segment 8 (NS) 1467.4 0.000000e+00 823/837 (98%) EPI654003 A/swine/Minnesota/A01509221/2014 (A/H0) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI492229 A/swine/Oklahoma/02083/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI492026 A/swine/Arkansas/02404/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI490718 A/swine/Oklahoma/02530/2009 (A/H3N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI488822 A/swine/Oklahoma/02056/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI488815 A/swine/Oklahoma/02107/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220928 A/swine/Texas/050593/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220911 A/swine/Oklahoma/053259/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220895 A/swine/Oklahoma/032726/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220871 A/swine/Oklahoma/020734-3/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220855 A/swine/Oklahoma/016179-9/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220839 A/swine/Oklahoma/011521-5/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220831 A/swine/Oklahoma/011521-4/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220823 A/swine/Oklahoma/011289-9/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220815 A/swine/Oklahoma/011289-8/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220807 A/swine/Oklahoma/011289-10/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220791 A/swine/Oklahoma/010710-8/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI220775 A/swine/Oklahoma/010226-16/2008 (A/H1N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI219372 A/swine/Oklahoma/001142/2009 (A/H3N2) segment 8 (NS) 1461.8 0.000000e+00 822/837 (98%) EPI840031 A/swine/South Dakota/A02025413/2015 (A/H1N2) segment 8 (NS) 1456.3 0.000000e+00 821/837 (98%) EPI490734 A/swine/Oklahoma/02985/2010 (A/H3N2) segment 8 (NS) 1456.3 0.000000e+00 821/837 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI864020 A/Iowa/32/2016 (A/H1N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI845489 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI855178 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI845465 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI845417 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI840050 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI840040 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI840015 A/swine/Arkansas/A02035008/2015 (A/H1N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI839873 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI647623 A/swine/Michigan/A01104086/2015 (A/H0) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI845478 A/swine/Indiana/A01812050/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI840060 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI839967 A/swine/Oklahoma/A01944447/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI839957 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI839899 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI839883 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI838561 A/swine/Indiana/A01727685/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI653057 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI653036 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI653022 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI653015 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 5 (NP) 2715.7 0.000000e+00 1488/1497 (99%) EPI838566 A/swine/Illinois/A01896091/2015 (A/H1N2) segment 5 (NP) 2710.2 0.000000e+00 1487/1497 (99%) EPI845451 A/swine/Ohio/A01730712/2016 (A/H1N2) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI837256 A/swine/Indiana/A01797599/2015 (A/H1N2) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI837159 A/swine/Indiana/A01812095/2015 (A/H1N2) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI761972 A/swine/Indiana/A01812190/2016 (A/H1N2) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI689985 A/swine/Indiana/A01812040/2015 (A/H1N2) segment 5 (NP) 2704.6 0.000000e+00 1486/1497 (99%) EPI753756 A/swine/Indiana/A01812189/2016 (A/H1N2) segment 5 (NP) 2699.1 0.000000e+00 1485/1497 (99%) EPI845545 A/swine/Illinois/A01894603/2016 (A/H1N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI839981 A/swine/Arkansas/A02024656/2015 (A/H1N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI839971 A/swine/Iowa/A02025218/2015 (A/H1N1) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI838521 A/swine/Iowa/A01727813/2015 (A/H1N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI838493 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI855173 A/swine/Illinois/A01895648/2016 (A/H1N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI838571 A/swine/Iowa/A01727251/2015 (A/H1N1) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI837209 A/swine/Ohio/A01796509/2015 (A/H3N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI778171 A/swine/Alabama/A01104091/2016 (A/H1N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI663603 A/swine/Michigan/A01410962/2014 (A/H3N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI816883 A/Wisconsin/71/2016 (A/H1N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI669179 A/swine/Indiana/A01260958/2015 (A/H3N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI641659 A/swine/Iowa/A01394595/2013 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI468660 A/swine/Ohio/A01349305/2013 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI467900 A/swine/Ohio/A01349485/2013 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397947 A/Ohio/85/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397497 A/Indiana/104/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397397 A/Indiana/99/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI397378 A/Indiana/138/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396235 A/Indiana/103/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI396176 A/Indiana/77/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395719 A/swine/Indiana/A01104023/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395359 A/swine/Indiana/A01104016/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI395244 A/Indiana/152/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI388357 A/Indiana/16/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI388353 A/Indiana/21/2012 (A/H3N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI393512 A/Indiana/65/2012 (A/H3N2) segment 5 (NP) 2673.2 0.000000e+00 1480/1497 (98%) EPI615639 A/swine/Illinois/A01047044/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI615607 A/swine/Illinois/A01047046/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI615556 A/swine/Illinois/A01047045/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593745 A/swine/Illinois/A01047041/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593741 A/swine/Illinois/A01047042/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593733 A/swine/Illinois/A01047024/2010 (A/H1N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI542340 A/swine/Ohio/10SW130/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI542335 A/swine/Ohio/10SW215/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI467759 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI433541 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI433534 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415211 A/swine/Ohio/10SW220/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415203 A/swine/Ohio/10SW219/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415195 A/swine/Ohio/10SW218/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415187 A/swine/Ohio/10SW216/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415171 A/swine/Ohio/10SW213/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415163 A/swine/Ohio/10SW212/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415155 A/swine/Ohio/10SW211/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415147 A/swine/Ohio/10SW210/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415139 A/swine/Ohio/10SW209/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415131 A/swine/Ohio/10SW208/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415123 A/swine/Ohio/10SW207/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415115 A/swine/Ohio/10SW206/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415107 A/swine/Ohio/10SW205/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415099 A/swine/Ohio/10SW204/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415091 A/swine/Ohio/10SW203/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415083 A/swine/Ohio/10SW202/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415075 A/swine/Ohio/10SW156/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415067 A/swine/Ohio/10SW139/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415059 A/swine/Ohio/10SW137/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415051 A/swine/Ohio/10SW136/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415035 A/swine/Ohio/10SW134/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415027 A/swine/Ohio/10SW133/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415019 A/swine/Ohio/10SW132/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415011 A/swine/Ohio/10SW131/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI415003 A/swine/Ohio/10SW128/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414995 A/swine/Ohio/10SW127/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414987 A/swine/Ohio/10SW126/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414979 A/swine/Ohio/10SW125/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414971 A/swine/Ohio/10SW122/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414963 A/swine/Ohio/10SW121/2010 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414187 A/swine/Indiana/A00968394/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414179 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI414171 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI401714 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI864023 A/Iowa/32/2016 (A/H1N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI840049 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI839980 A/swine/Arkansas/A02024656/2015 (A/H1N2) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI839956 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI837149 A/swine/Indiana/A01812236/2016 (A/H1N2) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI816886 A/Wisconsin/71/2016 (A/H1N2) segment 3 (PA) 3923.4 0.000000e+00 2142/2151 (99%) EPI855122 A/swine/Illinois/A01895418/2016 (A/H1N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI845450 A/swine/Ohio/A01730712/2016 (A/H1N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI840059 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI840039 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI837208 A/swine/Ohio/A01796509/2015 (A/H3N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI652828 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI647418 A/swine/Michigan/A01104086/2015 (A/H0) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI845416 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI840014 A/swine/Arkansas/A02035008/2015 (A/H1N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI652822 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI652820 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI652818 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI855177 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 3 (PA) 3908.6 0.000000e+00 2139/2151 (99%) EPI845488 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI839831 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI837255 A/swine/Indiana/A01797599/2015 (A/H1N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI778169 A/swine/Alabama/A01104091/2016 (A/H1N2) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI845476 A/swine/Indiana/A01812050/2015 (A/H1N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI839966 A/swine/Oklahoma/A01944447/2015 (A/H1N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI839898 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI838565 A/swine/Illinois/A01896091/2015 (A/H1N2) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI855137 A/swine/Illinois/A01895648/2016 (A/H1N2) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI845464 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI839882 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI838520 A/swine/Iowa/A01727813/2015 (A/H1N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI837157 A/swine/Indiana/A01812095/2015 (A/H1N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI689983 A/swine/Indiana/A01812040/2015 (A/H1N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI838570 A/swine/Iowa/A01727251/2015 (A/H1N1) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI838560 A/swine/Indiana/A01727685/2015 (A/H1N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI753754 A/swine/Indiana/A01812189/2016 (A/H1N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI816878 A/Minnesota/70/2016 (A/H1N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI761970 A/swine/Indiana/A01812190/2016 (A/H1N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI652841 A/swine/North Carolina/A01410354/2014 (A/H3N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI652838 A/swine/Kansas/A01377243/2014 (A/H3N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI663537 A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI838492 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI467767 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI845542 A/swine/Illinois/A01894603/2016 (A/H1N2) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI395325 A/West Virginia/06/2011 (A/H3N2) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI346489 A/West Virginia/06/2011 (A/H3N2) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI839839 A/swine/Arkansas/A01840184/2014 (A/H1N1) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI557538 A/Wisconsin/24/2014 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI547637 A/swine/Iowa/A01445629/2013 (A/H1N1) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI502444 A/swine/Indiana/A01260109/2012 (A/H1N1) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI459158 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI451201 A/swine/Alabama/A01104056/2012 (A/H0) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI414177 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI401713 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI398541 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI398533 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI398478 A/swine/Maryland/A01104040/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397944 A/Ohio/84/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397929 A/Ohio/19/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397922 A/Ohio/18/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397903 A/Hawaii/03/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397747 A/Ohio/87/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397658 A/Maryland/28/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397552 A/Ohio/86/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397536 A/Ohio/56/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397436 A/Wisconsin/30/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI397353 A/Ohio/57/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI396295 A/Maryland/23/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI396198 A/Ohio/79/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI396188 A/Ohio/77/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI396173 A/Ohio/80/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395947 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395939 A/swine/Indiana/A00968373/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395926 A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395918 A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395865 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395739 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI395290 A/Maryland/25/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI394945 A/Ohio/64/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI394941 A/Maryland/22/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI394914 A/Ohio/28/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI393778 A/Ohio/74/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI393685 A/Ohio/23/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI393507 A/Ohio/52/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI392922 A/Maryland/20/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI392744 A/Wisconsin/22/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI392731 A/Pennsylvania/13/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI388336 A/Ohio/16/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI388316 A/Ohio/20/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI388309 A/Ohio/15/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI388302 A/Ohio/14/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI381869 A/Hawaii/03/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI378519 A/Indiana/09/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI378511 A/Indiana/07/2012 (A/H3N2) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI381853 A/Ohio/13/2012 (A/H3N2) segment 3 (PA) 3849.5 0.000000e+00 2128/2150 (98%) EPI394073 A/Wisconsin/27/2012 (A/H3N2) segment 3 (PA) 3847.7 0.000000e+00 2128/2151 (98%) EPI845508 A/swine/Illinois/A01731417/2016 (A/H1N2) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI839799 A/swine/Arkansas/A01476717/2014 (A/H1N1) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI652836 A/swine/Illinois/A00857134/2011 (A/H0) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI549362 A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI864025 A/Iowa/32/2016 (A/H1N2) segment 2 (PB1) 4191.2 0.000000e+00 2269/2269 (100%) EPI840048 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 2 (PB1) 4126.5 0.000000e+00 2256/2267 (99%) EPI839979 A/swine/Arkansas/A02024656/2015 (A/H1N2) segment 2 (PB1) 4121.0 0.000000e+00 2255/2267 (99%) EPI653055 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 2 (PB1) 4121.0 0.000000e+00 2255/2267 (99%) EPI653034 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 2 (PB1) 4121.0 0.000000e+00 2255/2267 (99%) EPI653020 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 2 (PB1) 4121.0 0.000000e+00 2255/2267 (99%) EPI653013 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 2 (PB1) 4121.0 0.000000e+00 2255/2267 (99%) EPI840038 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 2 (PB1) 4115.5 0.000000e+00 2254/2267 (99%) EPI839965 A/swine/Oklahoma/A01944447/2015 (A/H1N2) segment 2 (PB1) 4115.5 0.000000e+00 2254/2267 (99%) EPI839897 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 2 (PB1) 4115.5 0.000000e+00 2254/2267 (99%) EPI838491 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 2 (PB1) 4115.5 0.000000e+00 2254/2267 (99%) EPI647621 A/swine/Michigan/A01104086/2015 (A/H0) segment 2 (PB1) 4115.5 0.000000e+00 2254/2267 (99%) EPI837148 A/swine/Indiana/A01812236/2016 (A/H1N2) segment 2 (PB1) 4113.6 0.000000e+00 2255/2269 (99%) EPI839881 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 2 (PB1) 4109.9 0.000000e+00 2253/2267 (99%) EPI839830 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 2 (PB1) 4109.9 0.000000e+00 2253/2267 (99%) EPI753753 A/swine/Indiana/A01812189/2016 (A/H1N2) segment 2 (PB1) 4109.9 0.000000e+00 2253/2267 (99%) EPI845449 A/swine/Ohio/A01730712/2016 (A/H1N2) segment 2 (PB1) 4098.8 0.000000e+00 2251/2267 (99%) EPI838558 A/swine/Indiana/A01727685/2015 (A/H1N2) segment 2 (PB1) 4098.8 0.000000e+00 2251/2267 (99%) EPI837254 A/swine/Indiana/A01797599/2015 (A/H1N2) segment 2 (PB1) 4098.8 0.000000e+00 2251/2267 (99%) EPI837156 A/swine/Indiana/A01812095/2015 (A/H1N2) segment 2 (PB1) 4093.3 0.000000e+00 2250/2267 (99%) EPI840058 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 2 (PB1) 4089.6 0.000000e+00 2248/2267 (99%) EPI845475 A/swine/Indiana/A01812050/2015 (A/H1N2) segment 2 (PB1) 4082.2 0.000000e+00 2248/2267 (99%) EPI838519 A/swine/Iowa/A01727813/2015 (A/H1N2) segment 2 (PB1) 4082.2 0.000000e+00 2248/2267 (99%) EPI837207 A/swine/Ohio/A01796509/2015 (A/H3N2) segment 2 (PB1) 4082.2 0.000000e+00 2248/2267 (99%) EPI761969 A/swine/Indiana/A01812190/2016 (A/H1N2) segment 2 (PB1) 4082.2 0.000000e+00 2248/2267 (99%) EPI838568 A/swine/Iowa/A01727251/2015 (A/H1N1) segment 2 (PB1) 4076.7 0.000000e+00 2247/2267 (99%) EPI838563 A/swine/Illinois/A01896091/2015 (A/H1N2) segment 2 (PB1) 4076.7 0.000000e+00 2247/2267 (99%) EPI845543 A/swine/Illinois/A01894603/2016 (A/H1N2) segment 2 (PB1) 4071.1 0.000000e+00 2246/2267 (99%) EPI845463 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 2 (PB1) 4071.1 0.000000e+00 2246/2267 (99%) EPI845415 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 2 (PB1) 4071.1 0.000000e+00 2246/2267 (99%) EPI468741 A/swine/Indiana/A01260254/2013 (A/H3N2) segment 2 (PB1) 4071.1 0.000000e+00 2246/2267 (99%) EPI845473 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 2 (PB1) 4065.6 0.000000e+00 2245/2267 (99%) EPI816888 A/Wisconsin/71/2016 (A/H1N2) segment 2 (PB1) 4065.6 0.000000e+00 2245/2267 (99%) EPI653962 A/swine/Kansas/A01377243/2014 (A/H3N2) segment 2 (PB1) 4065.6 0.000000e+00 2245/2267 (99%) EPI653953 A/swine/North Carolina/A01410354/2014 (A/H3N2) segment 2 (PB1) 4065.6 0.000000e+00 2245/2267 (99%) EPI855175 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 2 (PB1) 4060.1 0.000000e+00 2244/2267 (98%) EPI855136 A/swine/Illinois/A01895648/2016 (A/H1N2) segment 2 (PB1) 4060.1 0.000000e+00 2245/2268 (98%) EPI855121 A/swine/Illinois/A01895418/2016 (A/H1N2) segment 2 (PB1) 4060.1 0.000000e+00 2244/2267 (98%) EPI669177 A/swine/Indiana/A01260958/2015 (A/H3N2) segment 2 (PB1) 4060.1 0.000000e+00 2244/2267 (98%) EPI557540 A/Wisconsin/24/2014 (A/H3N2) segment 2 (PB1) 4060.1 0.000000e+00 2244/2267 (98%) EPI839798 A/swine/Arkansas/A01476717/2014 (A/H1N1) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI838506 A/swine/Indiana/A01812246/2016 (A/H3N2) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI838447 A/swine/Indiana/A01812245/2016 (A/H3N2) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI838280 A/Michigan/94/2016 (A/H3N2) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI838249 A/Michigan/84/2016 (A/H3N2) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI837338 A/swine/Indiana/A01812235/2016 (A/H3N2) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI673009 A/swine/North Carolina/120138/2014 (A/H1N1) segment 2 (PB1) 4049.0 0.000000e+00 2242/2267 (98%) EPI839838 A/swine/Arkansas/A01840184/2014 (A/H1N1) segment 2 (PB1) 4043.4 0.000000e+00 2241/2267 (98%) EPI838501 A/swine/Iowa/A01941921/2015 (A/H3N2) segment 2 (PB1) 4043.4 0.000000e+00 2241/2267 (98%) EPI778168 A/swine/Alabama/A01104091/2016 (A/H1N2) segment 2 (PB1) 4043.4 0.000000e+00 2241/2267 (98%) EPI459156 A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 2 (PB1) 4043.4 0.000000e+00 2241/2267 (98%) EPI691510 A/swine/Indiana/A01260976/2015 (A/H3N2) segment 2 (PB1) 4037.9 0.000000e+00 2241/2268 (98%) EPI645057 A/swine/Indiana/A01260926/2015 (A/H3N2) segment 2 (PB1) 4037.9 0.000000e+00 2240/2267 (98%) EPI642511 A/Michigan/39/2015 (A/H3N2) segment 2 (PB1) 4037.9 0.000000e+00 2240/2267 (98%) EPI396195 A/Ohio/78/2012 (A/H3N2) segment 2 (PB1) 4037.9 0.000000e+00 2240/2267 (98%) EPI692955 A/swine/Illinois/A00843253/2015 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI690488 A/swine/Wisconsin/A01104088/2015 (A/H1N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI678475 A/swine/North Carolina/A01476787/2014 (A/H1N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI467751 A/swine/Illinois/A01244401/2012 (A/H1N1) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI433531 A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI433525 A/swine/Indiana/A01260041/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI414184 A/swine/Indiana/A00968394/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI414176 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI414168 A/swine/Indiana/A00968398/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI401683 A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI401679 A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI401666 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI398516 A/swine/Ohio/A01133464/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397937 A/Ohio/41/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397757 A/Wisconsin/35/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397530 A/Ohio/47/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397522 A/Ohio/44/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397514 A/Ohio/36/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397430 A/Ohio/81/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397383 A/Indiana/138/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397349 A/Ohio/37/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397337 A/Hawaii/03/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI397094 A/Ohio/34/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI396297 A/Maryland/23/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI396260 A/Indiana/127/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI396252 A/Indiana/126/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI395292 A/Maryland/25/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI395285 A/Ohio/71/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI395265 A/Ohio/65/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI395257 A/Ohio/35/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI395249 A/Indiana/152/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI393693 A/West Virginia/16/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI393304 A/Indiana/18/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI388280 A/Indiana/13/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI381871 A/Hawaii/03/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI381847 A/Indiana/12/2012 (A/H3N2) segment 2 (PB1) 4032.4 0.000000e+00 2239/2267 (98%) EPI398477 A/swine/Maryland/A01104040/2012 (A/H3N2) segment 2 (PB1) 4028.7 0.000000e+00 2238/2267 (98%) EPI397221 A/Indiana/144/2012 (A/H3N2) segment 2 (PB1) 4028.7 0.000000e+00 2238/2267 (98%) EPI395738 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 2 (PB1) 4028.7 0.000000e+00 2238/2267 (98%) EPI388288 A/Indiana/17/2012 (A/H3N2) segment 2 (PB1) 4028.7 0.000000e+00 2238/2267 (98%) EPI845507 A/swine/Illinois/A01731417/2016 (A/H1N2) segment 2 (PB1) 4026.8 0.000000e+00 2238/2267 (98%) EPI837196 A/swine/North Carolina/A01797589/2015 (A/H1N1) segment 2 (PB1) 4026.8 0.000000e+00 2239/2268 (98%) EPI433570 A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 2 (PB1) 4026.8 0.000000e+00 2238/2267 (98%) EPI401608 A/swine/Ohio/A00138552/2012 (A/H3N2) segment 2 (PB1) 4026.8 0.000000e+00 2238/2267 (98%) EPI398498 A/swine/Ohio/A01133466/2012 (A/H3N2) segment 2 (PB1) 4026.8 0.000000e+00 2238/2267 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI864024 A/Iowa/32/2016 (A/H1N2) segment 1 (PB2) 4181.9 0.000000e+00 2264/2264 (100%) EPI839955 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 1 (PB2) 4154.2 0.000000e+00 2259/2264 (99%) EPI840047 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 1 (PB2) 4148.7 0.000000e+00 2258/2264 (99%) EPI840057 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 1 (PB2) 4143.2 0.000000e+00 2257/2264 (99%) EPI839978 A/swine/Arkansas/A02024656/2015 (A/H1N2) segment 1 (PB2) 4143.2 0.000000e+00 2257/2264 (99%) EPI839829 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 1 (PB2) 4143.2 0.000000e+00 2257/2264 (99%) EPI838559 A/swine/Indiana/A01727685/2015 (A/H1N2) segment 1 (PB2) 4143.2 0.000000e+00 2257/2264 (99%) EPI839896 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI837253 A/swine/Indiana/A01797599/2015 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI761968 A/swine/Indiana/A01812190/2016 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI653054 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI653033 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI653019 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI653012 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 1 (PB2) 4137.6 0.000000e+00 2256/2264 (99%) EPI839964 A/swine/Oklahoma/A01944447/2015 (A/H1N2) segment 1 (PB2) 4132.1 0.000000e+00 2255/2264 (99%) EPI845472 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 1 (PB2) 4126.5 0.000000e+00 2254/2264 (99%) EPI845448 A/swine/Ohio/A01730712/2016 (A/H1N2) segment 1 (PB2) 4126.5 0.000000e+00 2254/2264 (99%) EPI840037 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 1 (PB2) 4126.5 0.000000e+00 2254/2264 (99%) EPI689981 A/swine/Indiana/A01812040/2015 (A/H1N2) segment 1 (PB2) 4126.5 0.000000e+00 2254/2264 (99%) EPI647620 A/swine/Michigan/A01104086/2015 (A/H0) segment 1 (PB2) 4126.5 0.000000e+00 2254/2264 (99%) EPI845462 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 1 (PB2) 4121.0 0.000000e+00 2253/2264 (99%) EPI845413 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 1 (PB2) 4121.0 0.000000e+00 2253/2264 (99%) EPI838564 A/swine/Illinois/A01896091/2015 (A/H1N2) segment 1 (PB2) 4121.0 0.000000e+00 2253/2264 (99%) EPI838490 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 1 (PB2) 4121.0 0.000000e+00 2253/2264 (99%) EPI837155 A/swine/Indiana/A01812095/2015 (A/H1N2) segment 1 (PB2) 4121.0 0.000000e+00 2253/2264 (99%) EPI753752 A/swine/Indiana/A01812189/2016 (A/H1N2) segment 1 (PB2) 4121.0 0.000000e+00 2253/2264 (99%) EPI845474 A/swine/Indiana/A01812050/2015 (A/H1N2) segment 1 (PB2) 4115.5 0.000000e+00 2252/2264 (99%) EPI839880 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 1 (PB2) 4115.5 0.000000e+00 2252/2264 (99%) EPI838569 A/swine/Iowa/A01727251/2015 (A/H1N1) segment 1 (PB2) 4115.5 0.000000e+00 2252/2264 (99%) EPI855120 A/swine/Illinois/A01895418/2016 (A/H1N2) segment 1 (PB2) 4109.9 0.000000e+00 2251/2264 (99%) EPI855176 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 1 (PB2) 4104.4 0.000000e+00 2250/2264 (99%) EPI845541 A/swine/Illinois/A01894603/2016 (A/H1N2) segment 1 (PB2) 4104.4 0.000000e+00 2250/2264 (99%) EPI838513 A/swine/Iowa/A01727813/2015 (A/H1N2) segment 1 (PB2) 4104.4 0.000000e+00 2250/2264 (99%) EPI816887 A/Wisconsin/71/2016 (A/H1N2) segment 1 (PB2) 4104.4 0.000000e+00 2250/2264 (99%) EPI669176 A/swine/Indiana/A01260958/2015 (A/H3N2) segment 1 (PB2) 4098.8 0.000000e+00 2249/2264 (99%) EPI837206 A/swine/Ohio/A01796509/2015 (A/H3N2) segment 1 (PB2) 4082.2 0.000000e+00 2246/2264 (99%) EPI653961 A/swine/Kansas/A01377243/2014 (A/H3N2) segment 1 (PB2) 4076.7 0.000000e+00 2245/2264 (99%) EPI653952 A/swine/North Carolina/A01410354/2014 (A/H3N2) segment 1 (PB2) 4076.7 0.000000e+00 2245/2264 (99%) EPI855135 A/swine/Illinois/A01895648/2016 (A/H1N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI837337 A/swine/Indiana/A01812235/2016 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI778167 A/swine/Alabama/A01104091/2016 (A/H1N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI397537 A/Ohio/56/2012 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI395945 A/swine/Indiana/A00968376/2012 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI395937 A/swine/Indiana/A00968373/2012 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI395737 A/swine/Indiana/A00968386/2012 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI378520 A/Indiana/09/2012 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI378512 A/Indiana/07/2012 (A/H3N2) segment 1 (PB2) 4071.1 0.000000e+00 2244/2264 (99%) EPI839797 A/swine/Arkansas/A01476717/2014 (A/H1N1) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI468742 A/swine/Illinois/A01432127/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI446883 A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI446875 A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI446859 A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI446826 A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI401654 A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI398539 A/swine/Ohio/A00152576/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI398531 A/swine/Ohio/A01208457/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI398523 A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI398001 A/Ohio/84/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI397967 A/Wisconsin/34/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI397680 A/Wisconsin/31/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI397679 A/Wisconsin/29/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI397678 A/Ohio/86/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI396189 A/Ohio/77/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI395953 A/swine/Indiana/A00968379/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI395871 A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI395863 A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI394946 A/Ohio/64/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI394074 A/Wisconsin/27/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI393779 A/Ohio/74/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI393674 A/Ohio/15/2012 (A/H3N2) segment 1 (PB2) 4065.6 0.000000e+00 2243/2264 (99%) EPI397998 A/Ohio/18/2012 (A/H3N2) segment 1 (PB2) 4061.9 0.000000e+00 2242/2264 (99%) EPI397683 A/Ohio/57/2012 (A/H3N2) segment 1 (PB2) 4061.9 0.000000e+00 2242/2264 (99%) EPI378507 A/Indiana/07/2012 (A/H3N2) segment 1 (PB2) 4061.9 0.000000e+00 2239/2259 (99%) EPI838505 A/swine/Indiana/A01812246/2016 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI838446 A/swine/Indiana/A01812245/2016 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI838279 A/Michigan/94/2016 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI838248 A/Michigan/84/2016 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI467756 A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI414175 A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI401712 A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI401656 A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI398035 A/Ohio/69/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI398002 A/Ohio/88/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI397995 A/Hawaii/03/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI397675 A/Ohio/79/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI397437 A/Wisconsin/30/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI396267 A/Indiana/133/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI395274 A/Ohio/75/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI394930 A/Wisconsin/23/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI394910 A/Indiana/132/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI392753 A/Indiana/14/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI392745 A/Wisconsin/22/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI392732 A/Pennsylvania/13/2012 (A/H3N2) segment 1 (PB2) 4060.1 0.000000e+00 2242/2264 (99%) EPI397676 A/Ohio/80/2012 (A/H3N2) segment 1 (PB2) 4056.4 0.000000e+00 2241/2264 (98%) EPI397423 A/Minnesota/15/2012 (A/H3N2) segment 1 (PB2) 4056.4 0.000000e+00 2241/2264 (98%) EPI678474 A/swine/North Carolina/A01476787/2014 (A/H1N2) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%) EPI467752 A/swine/Iowa/A01244302/2012 (A/H3N2) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%) EPI467747 A/swine/Illinois/A01244401/2012 (A/H1N1) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%) EPI451220 A/swine/Ohio/A01208180/2012 (A/H3N2) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%) EPI451199 A/swine/Alabama/A01104056/2012 (A/H0) segment 1 (PB2) 4054.5 0.000000e+00 2241/2264 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI864022 A/Iowa/32/2016 (A/H1N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI762012 A/swine/Illinois/A01733165/2016 (A/H1N2) segment 7 (MP) 1803.5 0.000000e+00 981/983 (99%) EPI762009 A/swine/Illinois/A01732740/2016 (A/H1N2) segment 7 (MP) 1803.5 0.000000e+00 981/983 (99%) EPI753594 A/swine/Illinois/A01733640/2016 (A/H1N2) segment 7 (MP) 1803.5 0.000000e+00 981/983 (99%) EPI736628 A/swine/Illinois/A01730554/2016 (A/H0) segment 7 (MP) 1803.5 0.000000e+00 981/983 (99%) EPI753591 A/swine/Illinois/A01733533/2016 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI703965 A/swine/Illinois/A01797640/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI703848 A/swine/Illinois/A01797505/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI703827 A/swine/Illinois/A01749468/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI687683 A/swine/Illinois/A01749292/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI687680 A/swine/Illinois/A01749386/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI687677 A/swine/Illinois/A01749354/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI682795 A/swine/Illinois/A01749173/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI682728 A/swine/Illinois/A01944998/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI672968 A/swine/Illinois/A01795259/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI672962 A/swine/Illinois/A01945293/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI672892 A/swine/Illinois/A01945165/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI647509 A/swine/Illinois/A02025300/2015 (A/H1N2) segment 7 (MP) 1797.9 0.000000e+00 980/983 (99%) EPI711748 A/swine/Illinois/A01729080/2016 (A/H1N2) segment 7 (MP) 1794.2 0.000000e+00 979/983 (99%) EPI612519 A/swine/Arkansas/A02076312/2015 (A/H1N2) segment 7 (MP) 1794.2 0.000000e+00 979/983 (99%) EPI854007 A/swine/Indiana/A01732606/2016 (A/H1N1) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI764476 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI762146 A/swine/Illinois/A01732985/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI760247 A/swine/Oklahoma/A01676763/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI753612 A/swine/Oklahoma/A01733331/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI737401 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI736622 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI718316 A/swine/Oklahoma/A01729483/2016 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI704613 A/swine/Indiana/A01727837/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI687674 A/swine/Illinois/A01749356/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI682792 A/swine/Illinois/A01749275/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI678663 A/swine/Oklahoma/A01944545/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI678417 A/swine/Illinois/A01795486/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI678323 A/swine/Illinois/A01945741/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI641619 A/swine/Illinois/A02024907/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI641537 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI641534 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI620647 A/swine/Illinois/A02077350/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI620501 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI612540 A/swine/Arkansas/A02076387/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI612537 A/swine/Arkansas/A02076547/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI612516 A/swine/Ohio/A02077256/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI590670 A/swine/Oklahoma/A01841728/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586162 A/swine/Oklahoma/A01841015/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586159 A/swine/Arkansas/A01841034/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586150 A/swine/Arkansas/A01841049/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586147 A/swine/Oklahoma/A01841014/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586144 A/swine/Illinois/A01478910/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586138 A/swine/Oklahoma/A01841022/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586135 A/swine/Arkansas/A01841004/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586123 A/swine/Oklahoma/A01478925/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586120 A/swine/Oklahoma/A01478965/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586070 A/swine/Indiana/A01840743/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586016 A/swine/Illinois/A01840755/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI584816 A/swine/Indiana/A02077077/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI584795 A/swine/Arkansas/A01841343/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI584792 A/swine/Indiana/A02077078/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI584742 A/swine/Arkansas/A01841266/2015 (A/H1N2) segment 7 (MP) 1792.4 0.000000e+00 979/983 (99%) EPI586132 A/swine/Illinois/A01478979/2015 (A/H1N2) segment 7 (MP) 1788.7 0.000000e+00 978/983 (99%) EPI764452 A/swine/Illinois/A01894756/2016 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI762015 A/swine/Illinois/A01732936/2016 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI760178 A/swine/Illinois/A01733826/2016 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI736819 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI736637 A/swine/Indiana/A01730580/2016 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI709873 A/swine/Ohio/A01728296/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI703929 A/swine/Ohio/A01798226/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI703913 A/swine/Arkansas/A01798224/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI685644 A/swine/Indiana/A02025254/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI685641 A/swine/Iowa/A02025170/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI685636 A/swine/Iowa/A02025166/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI684597 A/swine/Arkansas/A01797067/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI684589 A/swine/Arkansas/A01797066/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI682813 A/swine/Ohio/A01795737/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI682722 A/swine/Arkansas/A01797068/2015 (A/H1N1) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI678660 A/swine/Illinois/A01945555/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI678610 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI678580 A/swine/Arkansas/A01945350/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI678426 A/swine/Oklahoma/A01857957/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI678302 A/swine/Arkansas/A01945580/2015 (A/H3N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI653038 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI653024 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI653017 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI647530 A/swine/Illinois/A02025282/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI645051 A/swine/Illinois/A02090176/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI641836 A/swine/Illinois/A02034146/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI641445 A/swine/Indiana/A02077934/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI623686 A/swine/Illinois/A01822445/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI621371 A/swine/Illinois/A01820488/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI620616 A/swine/Indiana/A02024006/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI620610 A/swine/Indiana/A02077457/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI620542 A/swine/Indiana/A02077486/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI620510 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI612724 A/swine/Illinois/A01820414/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI612718 A/swine/Illinois/A01820457/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI612582 A/swine/Illinois/A01554475/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI612558 A/swine/Illinois/A02077158/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI612548 A/swine/Illinois/A01471010/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI600311 A/swine/Minnesota/A01566625/2014 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI586037 A/swine/Indiana/A01840753/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%) EPI586034 A/swine/Arkansas/A01840760/2015 (A/H1N2) segment 7 (MP) 1786.8 0.000000e+00 978/983 (99%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI762011 A/swine/Illinois/A01733165/2016 (A/H1N2) segment 6 (NA) 2553.2 0.000000e+00 1386/1388 (99%) EPI762008 A/swine/Illinois/A01732740/2016 (A/H1N2) segment 6 (NA) 2547.7 0.000000e+00 1385/1388 (99%) EPI753590 A/swine/Illinois/A01733533/2016 (A/H1N2) segment 6 (NA) 2547.7 0.000000e+00 1385/1388 (99%) EPI736627 A/swine/Illinois/A01730554/2016 (A/H0) segment 6 (NA) 2547.7 0.000000e+00 1385/1388 (99%) EPI753593 A/swine/Illinois/A01733640/2016 (A/H1N2) segment 6 (NA) 2542.1 0.000000e+00 1384/1388 (99%) EPI711747 A/swine/Illinois/A01729080/2016 (A/H1N2) segment 6 (NA) 2542.1 0.000000e+00 1384/1388 (99%) EPI762145 A/swine/Illinois/A01732985/2016 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%) EPI703964 A/swine/Illinois/A01797640/2015 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%) EPI682727 A/swine/Illinois/A01944998/2015 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%) EPI672967 A/swine/Illinois/A01795259/2015 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%) EPI672961 A/swine/Illinois/A01945293/2015 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%) EPI672891 A/swine/Illinois/A01945165/2015 (A/H1N2) segment 6 (NA) 2536.6 0.000000e+00 1383/1388 (99%) EPI703828 A/swine/Illinois/A01749468/2015 (A/H1N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%) EPI682796 A/swine/Illinois/A01749173/2015 (A/H1N2) segment 6 (NA) 2531.0 0.000000e+00 1382/1388 (99%) EPI703847 A/swine/Illinois/A01797505/2015 (A/H1N2) segment 6 (NA) 2527.3 0.000000e+00 1381/1388 (99%) EPI687684 A/swine/Illinois/A01749292/2015 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%) EPI687681 A/swine/Illinois/A01749386/2015 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%) EPI687678 A/swine/Illinois/A01749354/2015 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%) EPI687675 A/swine/Illinois/A01749356/2015 (A/H1N2) segment 6 (NA) 2525.5 0.000000e+00 1381/1388 (99%) EPI760177 A/swine/Illinois/A01733826/2016 (A/H1N2) segment 6 (NA) 2520.0 0.000000e+00 1380/1388 (99%) EPI647508 A/swine/Illinois/A02025300/2015 (A/H1N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%) EPI620646 A/swine/Illinois/A02077350/2015 (A/H1N2) segment 6 (NA) 2514.4 0.000000e+00 1379/1388 (99%) EPI678416 A/swine/Illinois/A01795486/2015 (A/H1N2) segment 6 (NA) 2505.2 0.000000e+00 1377/1388 (99%) EPI678322 A/swine/Illinois/A01945741/2015 (A/H1N2) segment 6 (NA) 2503.3 0.000000e+00 1377/1388 (99%) EPI678600 A/swine/Indiana/A01945405/2015 (A/H1N2) segment 6 (NA) 2499.6 0.000000e+00 1376/1388 (99%) EPI682793 A/swine/Illinois/A01749275/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI682790 A/swine/Illinois/A01749186/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI671811 A/swine/Indiana/A02025965/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI641542 A/swine/Arkansas/A02035008/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI612581 A/swine/Illinois/A01554475/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI612536 A/swine/Arkansas/A02076547/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI612518 A/swine/Arkansas/A02076312/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI612515 A/swine/Ohio/A02077256/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586161 A/swine/Oklahoma/A01841015/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586146 A/swine/Oklahoma/A01841014/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586143 A/swine/Illinois/A01478910/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586134 A/swine/Arkansas/A01841004/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586131 A/swine/Illinois/A01478979/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586122 A/swine/Oklahoma/A01478925/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586119 A/swine/Oklahoma/A01478965/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586069 A/swine/Indiana/A01840743/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586036 A/swine/Indiana/A01840753/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586033 A/swine/Arkansas/A01840760/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI586015 A/swine/Illinois/A01840755/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI584741 A/swine/Arkansas/A01841266/2015 (A/H1N2) segment 6 (NA) 2497.8 0.000000e+00 1376/1388 (99%) EPI678609 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1375/1388 (99%) EPI590669 A/swine/Oklahoma/A01841728/2015 (A/H1N2) segment 6 (NA) 2494.1 0.000000e+00 1374/1386 (99%) EPI737400 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI736621 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI704821 A/swine/Illinois/A01749578/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI687589 A/swine/Minnesota/A01941141/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI685643 A/swine/Indiana/A02025254/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI682701 A/swine/Iowa/A01944834/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI669219 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI653058 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI653037 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI653023 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI653016 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI641835 A/swine/Illinois/A02034146/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI641618 A/swine/Illinois/A02024907/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI621372 A/swine/Illinois/A01820488/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI612719 A/swine/Illinois/A01820457/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI612557 A/swine/Illinois/A02077158/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1376/1389 (99%) EPI586158 A/swine/Arkansas/A01841034/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI586149 A/swine/Arkansas/A01841049/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI586137 A/swine/Oklahoma/A01841022/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI584791 A/swine/Indiana/A02077078/2015 (A/H1N2) segment 6 (NA) 2492.3 0.000000e+00 1375/1388 (99%) EPI764475 A/swine/Indiana/A01894865/2016 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1374/1388 (98%) EPI753599 A/swine/Oklahoma/A01733480/2016 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1374/1388 (98%) EPI620509 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1374/1388 (98%) EPI612539 A/swine/Arkansas/A02076387/2015 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1374/1388 (98%) EPI584815 A/swine/Indiana/A02077077/2015 (A/H1N2) segment 6 (NA) 2488.6 0.000000e+00 1374/1388 (98%) EPI736818 A/swine/Arkansas/A01729957/2016 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI704864 A/swine/Indiana/A01727661/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI703894 A/swine/Oklahoma/A01798161/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI678288 A/swine/Iowa/A01945639/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI641536 A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI623695 A/swine/Indiana/A01260875/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI620615 A/swine/Indiana/A02024006/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI620609 A/swine/Indiana/A02077457/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI620541 A/swine/Indiana/A02077486/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI620500 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI590795 A/swine/Illinois/A01470861/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI584794 A/swine/Arkansas/A01841343/2015 (A/H1N2) segment 6 (NA) 2486.7 0.000000e+00 1374/1388 (98%) EPI678298 A/swine/Indiana/A01945739/2015 (A/H1N2) segment 6 (NA) 2483.0 0.000000e+00 1373/1388 (98%) EPI838551 A/swine/Indiana/A01778290/2016 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI718309 A/swine/Illinois/A01729512/2016 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI689986 A/swine/Indiana/A01812040/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI687653 A/swine/Iowa/A01797314/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI682757 A/swine/Iowa/A01945940/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI678425 A/swine/Oklahoma/A01857957/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI678272 A/swine/Indiana/A01945744/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI669234 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI647529 A/swine/Illinois/A02025282/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI612725 A/swine/Illinois/A01820414/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI612549 A/swine/Illinois/A01471010/2015 (A/H1N2) segment 6 (NA) 2481.2 0.000000e+00 1373/1388 (98%) EPI762037 A/swine/Indiana/A01732805/2016 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1373/1389 (98%) EPI678558 A/swine/Oklahoma/A01944447/2015 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1372/1388 (98%) EPI641533 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 6 (NA) 2477.5 0.000000e+00 1373/1389 (98%) EPI760248 A/swine/Oklahoma/A01676763/2016 (A/H1N2) segment 6 (NA) 2475.6 0.000000e+00 1372/1388 (98%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI762010 A/swine/Illinois/A01733165/2016 (A/H1N2) segment 4 (HA) 3083.2 0.000000e+00 1683/1690 (99%) EPI753589 A/swine/Illinois/A01733533/2016 (A/H1N2) segment 4 (HA) 3083.2 0.000000e+00 1683/1690 (99%) EPI736626 A/swine/Illinois/A01730554/2016 (A/H0) segment 4 (HA) 3079.5 0.000000e+00 1682/1690 (99%) EPI703846 A/swine/Illinois/A01797505/2015 (A/H1N2) segment 4 (HA) 3077.6 0.000000e+00 1682/1690 (99%) EPI703826 A/swine/Illinois/A01749468/2015 (A/H1N2) segment 4 (HA) 3077.6 0.000000e+00 1682/1690 (99%) EPI687679 A/swine/Illinois/A01749386/2015 (A/H1N2) segment 4 (HA) 3077.6 0.000000e+00 1682/1690 (99%) EPI682726 A/swine/Illinois/A01944998/2015 (A/H1N2) segment 4 (HA) 3077.6 0.000000e+00 1682/1690 (99%) EPI753592 A/swine/Illinois/A01733640/2016 (A/H1N2) segment 4 (HA) 3072.1 0.000000e+00 1681/1690 (99%) EPI687682 A/swine/Illinois/A01749292/2015 (A/H1N2) segment 4 (HA) 3072.1 0.000000e+00 1681/1690 (99%) EPI687676 A/swine/Illinois/A01749354/2015 (A/H1N2) segment 4 (HA) 3072.1 0.000000e+00 1681/1690 (99%) EPI687673 A/swine/Illinois/A01749356/2015 (A/H1N2) segment 4 (HA) 3072.1 0.000000e+00 1681/1690 (99%) EPI762007 A/swine/Illinois/A01732740/2016 (A/H1N2) segment 4 (HA) 3068.4 0.000000e+00 1680/1690 (99%) EPI672966 A/swine/Illinois/A01795259/2015 (A/H1N2) segment 4 (HA) 3064.7 0.000000e+00 1679/1690 (99%) EPI682794 A/swine/Illinois/A01749173/2015 (A/H1N2) segment 4 (HA) 3061.0 0.000000e+00 1679/1690 (99%) EPI703963 A/swine/Illinois/A01797640/2015 (A/H1N2) segment 4 (HA) 3059.2 0.000000e+00 1678/1690 (99%) EPI672890 A/swine/Illinois/A01945165/2015 (A/H1N2) segment 4 (HA) 3057.3 0.000000e+00 1678/1690 (99%) EPI762144 A/swine/Illinois/A01732985/2016 (A/H1N2) segment 4 (HA) 3055.5 0.000000e+00 1678/1690 (99%) EPI672960 A/swine/Illinois/A01945293/2015 (A/H1N2) segment 4 (HA) 3055.5 0.000000e+00 1677/1690 (99%) EPI760176 A/swine/Illinois/A01733826/2016 (A/H1N2) segment 4 (HA) 3049.9 0.000000e+00 1677/1690 (99%) EPI711746 A/swine/Illinois/A01729080/2016 (A/H1N2) segment 4 (HA) 3044.4 0.000000e+00 1676/1690 (99%) EPI678599 A/swine/Indiana/A01945405/2015 (A/H1N2) segment 4 (HA) 3044.4 0.000000e+00 1676/1690 (99%) EPI678415 A/swine/Illinois/A01795486/2015 (A/H1N2) segment 4 (HA) 3040.7 0.000000e+00 1675/1690 (99%) EPI678321 A/swine/Illinois/A01945741/2015 (A/H1N2) segment 4 (HA) 3038.9 0.000000e+00 1675/1690 (99%) EPI590668 A/swine/Oklahoma/A01841728/2015 (A/H1N2) segment 4 (HA) 3027.8 0.000000e+00 1673/1690 (98%) EPI647507 A/swine/Illinois/A02025300/2015 (A/H1N2) segment 4 (HA) 3022.2 0.000000e+00 1672/1690 (98%) EPI620645 A/swine/Illinois/A02077350/2015 (A/H1N2) segment 4 (HA) 3022.2 0.000000e+00 1672/1690 (98%) EPI620704 A/swine/Illinois/A01470835/2015 (A/H1N2) segment 4 (HA) 3016.7 0.000000e+00 1671/1690 (98%) EPI590793 A/swine/Illinois/A01470861/2015 (A/H1N2) segment 4 (HA) 3016.7 0.000000e+00 1671/1690 (98%) EPI586157 A/swine/Arkansas/A01841034/2015 (A/H1N2) segment 4 (HA) 3013.0 0.000000e+00 1670/1690 (98%) EPI620608 A/swine/Indiana/A02077457/2015 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1670/1690 (98%) EPI586145 A/swine/Oklahoma/A01841014/2015 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1670/1690 (98%) EPI586133 A/swine/Arkansas/A01841004/2015 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1670/1690 (98%) EPI586130 A/swine/Illinois/A01478979/2015 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1670/1690 (98%) EPI584814 A/swine/Indiana/A02077077/2015 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1670/1690 (98%) EPI584790 A/swine/Indiana/A02077078/2015 (A/H1N2) segment 4 (HA) 3011.2 0.000000e+00 1670/1690 (98%) EPI620499 A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 4 (HA) 3007.5 0.000000e+00 1669/1690 (98%) EPI586068 A/swine/Indiana/A01840743/2015 (A/H1N2) segment 4 (HA) 3007.5 0.000000e+00 1669/1690 (98%) EPI586032 A/swine/Arkansas/A01840760/2015 (A/H1N2) segment 4 (HA) 3007.5 0.000000e+00 1669/1690 (98%) EPI584793 A/swine/Arkansas/A01841343/2015 (A/H1N2) segment 4 (HA) 3007.5 0.000000e+00 1669/1690 (98%) EPI718308 A/swine/Illinois/A01729512/2016 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI682791 A/swine/Illinois/A01749275/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI647622 A/swine/Michigan/A01104086/2015 (A/H0) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI647578 A/swine/Illinois/A02034785/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI641443 A/swine/Indiana/A02077934/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI623684 A/swine/Illinois/A01822445/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI612717 A/swine/Illinois/A01820457/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI612547 A/swine/Illinois/A01471010/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI612538 A/swine/Arkansas/A02076387/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI586160 A/swine/Oklahoma/A01841015/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI586142 A/swine/Illinois/A01478910/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI586014 A/swine/Illinois/A01840755/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI584740 A/swine/Arkansas/A01841266/2015 (A/H1N2) segment 4 (HA) 3005.6 0.000000e+00 1669/1690 (98%) EPI669233 A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 4 (HA) 3001.9 0.000000e+00 1668/1690 (98%) EPI612580 A/swine/Illinois/A01554475/2015 (A/H1N2) segment 4 (HA) 3001.9 0.000000e+00 1668/1690 (98%) EPI586136 A/swine/Oklahoma/A01841022/2015 (A/H1N2) segment 4 (HA) 3001.9 0.000000e+00 1668/1690 (98%) EPI704601 A/swine/Illinois/A01727702/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI687588 A/swine/Minnesota/A01941141/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI682700 A/swine/Iowa/A01944834/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI647528 A/swine/Illinois/A02025282/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI641541 A/swine/Arkansas/A02035008/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI612723 A/swine/Illinois/A01820414/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI612556 A/swine/Illinois/A02077158/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI586118 A/swine/Oklahoma/A01478965/2015 (A/H1N2) segment 4 (HA) 3000.1 0.000000e+00 1668/1690 (98%) EPI620508 A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 4 (HA) 2998.2 0.000000e+00 1667/1690 (98%) EPI586148 A/swine/Arkansas/A01841049/2015 (A/H1N2) segment 4 (HA) 2996.4 0.000000e+00 1667/1690 (98%) EPI586035 A/swine/Indiana/A01840753/2015 (A/H1N2) segment 4 (HA) 2996.4 0.000000e+00 1666/1690 (98%) EPI760246 A/swine/Oklahoma/A01676763/2016 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI704956 A/swine/Indiana/A01727661/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI703930 A/swine/Illinois/A01896114/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI703918 A/swine/Illinois/A01797679/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI687661 A/swine/Illinois/A01797392/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI685642 A/swine/Indiana/A02025254/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI682788 A/swine/Illinois/A01749186/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI678641 A/swine/Iowa/A01795376/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI678608 A/swine/Oklahoma/A01857679/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI669218 A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1667/1690 (98%) EPI621370 A/swine/Illinois/A01820488/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1668/1691 (98%) EPI620540 A/swine/Indiana/A02077486/2015 (A/H1N2) segment 4 (HA) 2994.5 0.000000e+00 1666/1690 (98%) EPI678287 A/swine/Iowa/A01945639/2015 (A/H1N2) segment 4 (HA) 2990.8 0.000000e+00 1666/1690 (98%) EPI672878 A/swine/Illinois/A01945130/2015 (A/H1N2) segment 4 (HA) 2990.8 0.000000e+00 1667/1691 (98%) EPI641532 A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 4 (HA) 2990.8 0.000000e+00 1667/1691 (98%) EPI737399 A/swine/Indiana/A01731476/2016 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1667/1691 (98%) EPI736620 A/swine/Oklahoma/A01730659/2016 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI704923 A/swine/Illinois/A01796671/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI704883 A/swine/Iowa/A01941556/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI704819 A/swine/Illinois/A01749578/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI703849 A/swine/Illinois/A01797468/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI687670 A/swine/Illinois/A01749362/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI687652 A/swine/Iowa/A01797314/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI682756 A/swine/Iowa/A01945940/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI678278 A/swine/Iowa/A01795438/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI653056 A/swine/Indiana/A01260910/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI653035 A/swine/Indiana/A01260906/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI653021 A/swine/Indiana/A01260885/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI653014 A/swine/Indiana/A01260888/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI645050 A/swine/Illinois/A02090176/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1667/1691 (98%) EPI612535 A/swine/Arkansas/A02076547/2015 (A/H1N2) segment 4 (HA) 2989.0 0.000000e+00 1666/1690 (98%) EPI682744 A/swine/Illinois/A01944886/2015 (A/H1N2) segment 4 (HA) 2985.3 0.000000e+00 1665/1690 (98%) EPI620614 A/swine/Indiana/A02024006/2015 (A/H1N2) segment 4 (HA) 2985.3 0.000000e+00 1665/1690 (98%) EPI612517 A/swine/Arkansas/A02076312/2015 (A/H1N2) segment 4 (HA) 2985.3 0.000000e+00 1665/1690 (98%)