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As of Thursday, May 26, 2016, VDH has reported 18 cases of Zika virus disease in Virginia residents to the CDC (2 in Northwest Region, 9 in Northern Region, 1 in Eastern Region, 4 in Central Region and 2 in Southwest Region). http://www.vdh.virginia.gov/epidemiology/zika-virus-update/

As of Thursday, May 26, 2016, VDH has reported 18 cases of Zika virus disease in Virginia residents to the CDC (2 in Northwest Region, 9 in Northern Region, 1 in Eastern Region, 4 in Central Region and 2 in Southwest Region). CDC has issued a travel alert (Level 2-Practice Enhanced Precautions) for people traveling to regions and certain countries where Zika virus transmission is ongoing.

Summary As of 25 May 2016, 60 countries and territories report continuing mosquito-borne transmission of which:46 countries are experiencing a first outbreak of Zika virus since 2015, with no previous evidence of circulation, and with ongoing transmission by mosquitos.14 countries reported evidence of Zika virus transmission between 2007 and 2014, with ongoing transmission.In addition, four countries or territories have reported evidence of Zika virus transmission between 2007 and 2014, without ongoing transmission: Cook Islands, French Polynesia, ISLA DE PASCUA – Chile and YAP (Federated States of Micronesia).Ten countries have reported evidence of person-to-person transmission of Zika virus, probably via a sexual route.In the week to 25 May 2016, no new country reported on mosquito-borne or person-to-person Zika virus transmission.As of 25 May 2016, microcephaly and other central nervous system (CNS) malformations potentially associated with Zika virus infection or suggestive of congenital infection, have been reported by ten countries or territories. Infection of the mothers took place in eight different countries, for one additional case the precise country in Latin America is not determined. Spain is the latest country to report a case of microcephaly associated with Zika virus in a returning pregnant traveller.Two cases of microcephaly and other neurological abnormalities are currently under verification in the Bolivarian Republic of Venezuela and Costa Rica.In the context of Zika virus circulation, 13 countries and territories worldwide have reported an increased incidence of Guillain-Barré syndrome (GBS) and/or laboratory confirmation of a Zika virus infection among GBS cases. One GBS case associated with Zika virus infection in a returning traveller to the Netherlands has been reported. A case of GBS from Guadeloupe is under verification.Sequencing of the virus that causes the Zika outbreak in Cabo Verde showed that the virus is of the Asian lineage and the same as the one that circulates in Brazil. The precise implication of this finding is yet to be determined.Based on research to date, there is scientific consensus that Zika virus is a cause of microcephaly and GBS.The global Strategic Response Framework launched by WHO in February 2016 encompasses surveillance, response activities and research. An interim report has been published on some of the key activities being undertaken jointly by WHO and international, regional and national partners in response to this public health emergency. A revised strategy for the period July 2016 to December 2017 is currently being developed with partners and will be published in mid-June.WHO has developed new advice and information on diverse topics in the context of Zika virus. WHO’s latest information materials, news and resources to support corporate and programmatic risk communication, and community engagement are available online. Enlarge imageDownload the image pdf, 3.49Mb

Zika situation report26 May 2016Zika virus, Microcephaly and Guillain-Barré syndromeRead the full situation reporthttp://www.who.int/emergencies/zika-virus/situation-report/26-may-2016/en/

May 26, 2016 DEPARTMENT OF HEALTH DAILY ZIKA UPDATE: NO NEW CASES TODAY Contact:Communications [email protected](850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the Florida Department of Health will issue a Zika virus update each week day at 2 p.m. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. There are no new cases today. Of the cases confirmed in Florida, five cases are still exhibiting symptoms. According to CDC, symptoms associated with the Zika virus last between seven to 10 days. CDC recommends that women who are pregnant or thinking of becoming pregnant postpone travel to Zika affected areas. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms since January. The total number of pregnant women who have been monitored is 36, with 9 having met the previous CDC case definition. County Number of Cases (all travel related) Alachua 4 Brevard 3 Broward 17 Clay 2 Collier 1 Hillsborough 3 Lee 5 Martin 1 Miami-Dade 48 Orange 10 Osceola 5 Palm Beach 7 Pasco 1 Pinellas 4 Polk 3 Santa Rosa 1 Seminole 3 St. Johns 2 Volusia 2 Total cases not involving pregnant women 122 Cases involving pregnant women regardless of symptoms* 36 *Counties of pregnant women will not be shared. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 1,862 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. All cases are travel-associated. There have been no locally-acquired cases of Zika in Florida. For more information on the Zika virus, click here. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. More Information on DOH action on Zika: On Feb. 3, Governor Scott directed the State Surgeon General to issue a Declaration of Public Health Emergency for the counties of residents with travel-associated cases of Zika.There have been 19 counties included in the declaration– Alachua, Brevard, Broward, Clay, Collier, Hillsborough, Lee, Martin, Miami-Dade, Orange, Osceola, Palm Beach, Pasco, Pinellas, Polk, Santa Rosa, Seminole, St. Johns and Volusia – and will be updated as needed. DOH encourages Florida residents and visitors to protect themselves from all mosquito-borne illnesses by draining standing water; covering their skin with repellent and clothing; and covering windows with screens.DOH has a robust mosquito-borne illness surveillance system and is working with CDC, the Florida Department of Agriculture and Consumer Services and local county mosquito control boards to ensure that the proper precautions are being taken to protect Florida residents and visitors.On April 6, Governor Rick Scott and Interim State Surgeon General Dr. Celeste Philip hosted a conference call with Florida Mosquito Control Districts to discuss ongoing preparations to fight the possible spread of the Zika virus in Florida. There were 74 attendees on the call.On May 11, Governor Scott met with federal leaders on the importance of preparing for Zika as we would a hurricane. Governor Scott requested 5,000 Zika preparedness kits from HHS Secretary Sylvia Burwell as well as a plan from FEMA on how resources will be allocated to states in the event an emergency is declared.Florida currently has the capacity to test 6,234 people for active Zika virus and 1,912 for Zika antibodies.Federal Guidance on Zika: According to CDC, Zika illness is generally mild with a rash, fever and joint pain. CDC researchers have concluded that Zika virus is a cause of microcephaly and other birth defects.The FDA released guidance regarding donor screening, deferral and product management to reduce the risk of transfusion-transmission of Zika virus. Additional information is available on the FDA website here.CDC has put out guidance related to the sexual transmission of the Zika virus. This includes CDC recommendation that if you have traveled to a country with local transmission of Zika you should abstain from unprotected sex.Based on CDC guidance released Friday, DOH will now report pregnant women with evidence of Zika virus regardless of symptoms. Prior to Friday, CDC guidance was only to report cases of Zika if the pregnant women was symptomatic.For more information on Zika virus, click here. About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov. http://www.floridahealth.gov/newsroom/2016/05/052616-zika-update.html

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds437437100%4e-119100%KX261851.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds42642699%8e-11699%KX261853.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome42642699%8e-11699%KU922923.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds42542599%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42342398%9e-11599%KU954085.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome42142199%3e-11499%KX262887.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome42142199%3e-11499%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome42142199%3e-11499%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds42142199%3e-11499%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42142199%3e-11499%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome42142199%3e-11499%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome42142199%3e-11499%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome42142199%3e-11499%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome42142199%3e-11499%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome42142199%3e-11499%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome42142199%3e-11499%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome42142199%3e-11499%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds42142199%3e-11499%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds42142199%3e-11499%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome42142199%3e-11499%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome42142199%3e-11499%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds42142199%3e-11499%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds42142199%3e-11499%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome42142199%3e-11499%KU527068.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds42142199%3e-11499%KU686218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds42142199%3e-11499%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome42142199%3e-11499%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds42142199%3e-11499%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds42142199%3e-11499%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds42142199%3e-11499%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID42142199%3e-11499%AB908162.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome41741799%4e-11398%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome41741799%4e-11398%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds41741799%4e-11398%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds41741799%4e-11398%KU820897.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome41741799%4e-11398%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds41741799%4e-11398%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds41741799%4e-11398%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds41741799%4e-11398%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds41741799%4e-11398%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome41741799%4e-11398%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome41741799%4e-11398%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome41741799%4e-11398%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome41741799%4e-11398%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome41741799%4e-11398%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds41741799%4e-11398%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds41741799%4e-11398%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds41741799%4e-11398%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome41741799%4e-11398%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds41741799%4e-11398%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds41741799%4e-11398%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome41741799%4e-11398%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds41741799%4e-11398%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome41741799%4e-11398%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome41741799%4e-11398%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome41741799%4e-11398%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome41741799%4e-11398%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds41741799%4e-11398%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds41741799%4e-11398%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds41741799%4e-11398%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds41741799%4e-11398%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds41741799%4e-11398%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds41741799%4e-11398%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome41741799%4e-11398%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds41741799%4e-11398%KJ776791.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds41441496%5e-11299%KX261852.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome41241299%2e-11198%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome41241299%2e-11198%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds41241299%2e-11198%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds40840899%2e-11098%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome40840899%2e-11098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds40840899%2e-11098%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds40340399%9e-10997%EU545988.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds39939994%1e-10799%KX261855.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds39639693%1e-10699%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds39239293%2e-10598%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds39239293%2e-10598%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds39239293%2e-10598%KM212963.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds38338390%8e-10399%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds38338390%8e-10399%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds37937990%1e-10198%KJ680134.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds36536585%2e-9799%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds36536585%2e-9799%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds36536585%2e-9799%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds36536585%2e-9799%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds36536585%2e-9799%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds36036085%9e-9699%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds36036085%9e-9699%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds35435499%4e-9493%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds34934999%2e-9292%KF268949.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds34234283%2e-9098%KT381874.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds34234298%2e-9092%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds34034099%9e-9091%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds34034099%9e-9091%KF268948.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds33133199%4e-8790%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds33133199%4e-8790%HQ234500.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds32732799%5e-8690%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome32232299%2e-8490%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome32232299%2e-8490%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome32232299%2e-8490%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome32232299%2e-8490%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds32232299%2e-8490%HQ234501.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds32232299%2e-8490%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds31831899%3e-8389%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome31831899%3e-8389%KU955594.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome31831899%3e-8389%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds31631699%1e-8289%KF383117.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds31331399%1e-8189%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID31331399%1e-8189%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds31331399%1e-8189%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds31331399%1e-8189%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds31331399%1e-8189%HQ234498.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence30430499%6e-7988%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome29829869%3e-7799%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome29729767%9e-77100%KX101066.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28828865%5e-74100%KX173843.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds28628699%2e-7386%KF383118.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28228264%2e-72100%KX173844.1

LOCUS KX261851 242 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL01 polyprotein gene, partial cds. ACCESSION KX261851 VERSION KX261851.1 GI:1031621531 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..242 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL01" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>242 /codon_start=2 /product="polyprotein" /protein_id="ANG09400.1" /db_xref="GI:1031621532" /translation="VMILLIALAYSIRCIGVSNRDLVEGMSGGTWVDVVLEHGGCVTV MAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMA" ORIGIN 1 ggtcatgata ctgctgattg ccctggcata cagcatcagg tgcataggag tcagcaatag 61 agacttagtg gaaggtatgt caggtgggac ttgggttgat gttgtcttgg aacatggagg 121 ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg ttacaacaac 181 agtcagcaac atggcggagg taagatccta ctgctatgag gcatcaatat cagacatggc 241 tc

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds437437100%4e-119100%KX261852.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome437437100%4e-119100%KU922923.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome432432100%2e-11799%KX262887.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome432432100%2e-11799%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds432432100%2e-11799%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome432432100%2e-11799%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome432432100%2e-11799%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome432432100%2e-11799%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome432432100%2e-11799%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome432432100%2e-11799%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome432432100%2e-11799%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome432432100%2e-11799%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome432432100%2e-11799%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds432432100%2e-11799%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds432432100%2e-11799%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome432432100%2e-11799%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome432432100%2e-11799%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds432432100%2e-11799%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds432432100%2e-11799%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome432432100%2e-11799%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds432432100%2e-11799%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds432432100%2e-11799%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds432432100%2e-11799%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds432432100%2e-11799%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID432432100%2e-11799%AB908162.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds428428100%2e-11699%KX261853.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome428428100%2e-11699%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome428428100%2e-11699%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds428428100%2e-11699%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds428428100%2e-11699%KU820897.2Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome428428100%2e-11699%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome428428100%2e-11699%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds428428100%2e-11699%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds428428100%2e-11699%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds428428100%2e-11699%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds428428100%2e-11699%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome428428100%2e-11699%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome428428100%2e-11699%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome428428100%2e-11699%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome428428100%2e-11699%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome428428100%2e-11699%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds428428100%2e-11699%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds428428100%2e-11699%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds428428100%2e-11699%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome428428100%2e-11699%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds428428100%2e-11699%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds428428100%2e-11699%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome428428100%2e-11699%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds428428100%2e-11699%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome428428100%2e-11699%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome428428100%2e-11699%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome428428100%2e-11699%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome428428100%2e-11699%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds428428100%2e-11699%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds428428100%2e-11699%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome428428100%2e-11699%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds428428100%2e-11699%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds428428100%2e-11699%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds428428100%2e-11699%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds428428100%2e-11699%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome428428100%2e-11699%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds428428100%2e-11699%KJ776791.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds42342397%9e-11599%KX261855.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome423423100%9e-11599%KU955593.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42342396%9e-115100%KU954085.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome423423100%9e-11599%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds42342397%9e-11599%KU686218.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds423423100%9e-11599%JN860885.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds42142196%3e-114100%KX261854.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds419419100%1e-11398%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome419419100%1e-11398%KU681082.3Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds41941997%1e-11399%KM212966.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds419419100%1e-11398%KF993678.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds41641697%1e-11299%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds41641697%1e-11299%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds41641697%1e-11299%KM212963.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds41441496%5e-11299%KX261851.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds414414100%5e-11298%EU545988.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds40740794%7e-11099%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds40740794%7e-11099%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds40340394%9e-10999%KJ680134.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds38938988%2e-104100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds38938988%2e-104100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds38938988%2e-104100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds38938988%2e-104100%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds38938988%2e-104100%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds38338388%8e-10399%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds38338388%8e-10399%KJ634273.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds36536586%2e-9799%KT381874.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds365365100%2e-9793%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds347347100%6e-9292%KF268949.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds342342100%2e-9091%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds342342100%2e-9091%KF268948.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds338338100%3e-8991%KF383115.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds329329100%2e-8690%KU963574.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds329329100%2e-8690%KF383116.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds329329100%2e-8690%HQ234500.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome320320100%8e-8489%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome320320100%8e-8489%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome320320100%8e-8489%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome320320100%8e-8489%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds320320100%8e-8489%HQ234501.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds320320100%8e-8489%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds315315100%3e-8289%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome315315100%3e-8289%KU955594.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome315315100%3e-8289%AY632535.2Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome31331372%1e-8199%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31131171%4e-81100%KX101066.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds311311100%4e-8188%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID311311100%4e-8188%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds311311100%4e-8188%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds311311100%4e-8188%KF383119.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds311311100%4e-8188%KF383117.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds311311100%4e-8188%HQ234498.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence306306100%2e-7988%KF383120.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds30230269%2e-78100%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds29729767%9e-77100%KX173844.1

LOCUS KX261852 242 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL06 polyprotein gene, partial cds. ACCESSION KX261852 VERSION KX261852.1 GI:1031621533 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..242 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL06" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>242 /codon_start=1 /product="polyprotein" /protein_id="ANG09401.1" /db_xref="GI:1031621534" /translation="ILLIALAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMA QDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASD" ORIGIN 1 atactgctga ttgccctggc atacagcatc aggtgcatag gagtcagcaa tagggacttt 61 gtggaaggta tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc 121 accgtaatgg cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc 181 aacatggcgg aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac 241 ag

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds461461100%4e-126100%KX261853.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome452452100%2e-12399%KX247646.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds452452100%2e-12399%KU820897.2Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome452452100%2e-12399%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome452452100%2e-12399%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome452452100%2e-12399%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome452452100%2e-12399%KX087102.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome452452100%2e-12399%KU922923.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome446446100%9e-12299%KX262887.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome446446100%9e-12299%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds446446100%9e-12299%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome446446100%9e-12299%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome446446100%9e-12299%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome446446100%9e-12299%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome446446100%9e-12299%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome446446100%9e-12299%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome446446100%9e-12299%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome446446100%9e-12299%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome446446100%9e-12299%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds446446100%9e-12299%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds446446100%9e-12299%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome446446100%9e-12299%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome446446100%9e-12299%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds446446100%9e-12299%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds446446100%9e-12299%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome446446100%9e-12299%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds446446100%9e-12299%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds446446100%9e-12299%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds446446100%9e-12299%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds446446100%9e-12299%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID446446100%9e-12299%AB908162.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome443443100%1e-12098%KX253996.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds443443100%1e-12098%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome443443100%1e-12098%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome443443100%1e-12098%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds443443100%1e-12098%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds443443100%1e-12098%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds443443100%1e-12098%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds443443100%1e-12098%KX173840.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome443443100%1e-12098%KX117076.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds443443100%1e-12098%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds443443100%1e-12098%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds443443100%1e-12098%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome443443100%1e-12098%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds443443100%1e-12098%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds443443100%1e-12098%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome443443100%1e-12098%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds443443100%1e-12098%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome443443100%1e-12098%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome443443100%1e-12098%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome443443100%1e-12098%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome443443100%1e-12098%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds443443100%1e-12098%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds443443100%1e-12098%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome443443100%1e-12098%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds443443100%1e-12098%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds443443100%1e-12098%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds443443100%1e-12098%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds443443100%1e-12098%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome443443100%1e-12098%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds443443100%1e-12098%KJ776791.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome437437100%4e-11998%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome437437100%4e-11998%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds437437100%4e-11998%KU686218.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds437437100%4e-11998%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds434434100%5e-11898%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome434434100%5e-11898%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds434434100%5e-11898%KF993678.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds42842894%2e-11699%KX261852.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds428428100%2e-11697%EU545988.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds42642694%8e-11699%KX261851.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds42542595%3e-11599%KX261855.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds42542594%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42142193%3e-11499%KU954085.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds42142194%3e-11499%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds41741794%4e-11398%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds41741794%4e-11398%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds41741794%4e-11398%KM212963.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds40840891%2e-11099%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds40840891%2e-11099%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds40540591%3e-10998%KJ680134.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds39439486%5e-10699%KU646827.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds39039086%6e-10599%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds39039086%6e-10599%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds39039086%6e-10599%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds39039086%6e-10599%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds39039086%6e-10599%KU646828.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds38538586%2e-10399%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds379379100%1e-10193%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds370370100%5e-9992%KF268949.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds36736784%7e-9898%KT381874.1

LOCUS KX261853 255 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL10 polyprotein gene, partial cds. ACCESSION KX261853 VERSION KX261853.1 GI:1031621535 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 255) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 255) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..255 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL10" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>255 /codon_start=2 /product="polyprotein" /protein_id="ANG09402.1" /db_xref="GI:1031621536" /translation="VMILLIALAYSIRCIGVSNRDLVEGMSGGTWVDVVLEHGGCVTV MAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSR" ORIGIN 1 ggtcatgata ctgctgattg ccctggcata cagcatcagg tgcataggag tcagcaatag 61 ggacttagtg gaaggtatgt caggtgggac ttgggttgat gtcgtcttgg aacatggagg 121 ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg ttacaacaac 181 agtcagcaac atggcggagg taagatccta ctgctatgag gcatcaatat cagacatggc 241 ttcggacagc cgctg

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Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds434434100%5e-118100%KX261854.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome434434100%5e-118100%KU922923.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome428428100%2e-11699%KX262887.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome428428100%2e-11699%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome428428100%2e-11699%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds428428100%2e-11699%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome428428100%2e-11699%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome428428100%2e-11699%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome428428100%2e-11699%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome428428100%2e-11699%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome428428100%2e-11699%KU940224.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42842898%2e-116100%KU954085.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome428428100%2e-11699%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome428428100%2e-11699%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome428428100%2e-11699%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds428428100%2e-11699%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds428428100%2e-11699%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome428428100%2e-11699%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome428428100%2e-11699%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds428428100%2e-11699%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds428428100%2e-11699%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome428428100%2e-11699%KU527068.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds428428100%2e-11699%KU686218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds428428100%2e-11699%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome428428100%2e-11699%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds428428100%2e-11699%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds428428100%2e-11699%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds428428100%2e-11699%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID428428100%2e-11699%AB908162.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds425425100%3e-11599%KX261853.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds425425100%3e-11599%KX261851.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome425425100%3e-11599%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome425425100%3e-11599%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds425425100%3e-11599%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds425425100%3e-11599%KU820897.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome425425100%3e-11599%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds425425100%3e-11599%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds425425100%3e-11599%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds425425100%3e-11599%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds425425100%3e-11599%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome425425100%3e-11599%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome425425100%3e-11599%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome425425100%3e-11599%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome425425100%3e-11599%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome425425100%3e-11599%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds425425100%3e-11599%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds425425100%3e-11599%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds425425100%3e-11599%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome425425100%3e-11599%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds425425100%3e-11599%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds425425100%3e-11599%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome425425100%3e-11599%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds425425100%3e-11599%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome425425100%3e-11599%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome425425100%3e-11599%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome425425100%3e-11599%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome425425100%3e-11599%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds425425100%3e-11599%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds425425100%3e-11599%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds425425100%3e-11599%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds425425100%3e-11599%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds425425100%3e-11599%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds425425100%3e-11599%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome425425100%3e-11599%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds425425100%3e-11599%KJ776791.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds42142197%3e-114100%KX261852.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome419419100%1e-11399%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome419419100%1e-11399%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds419419100%1e-11399%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds416416100%1e-11298%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome416416100%1e-11298%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds416416100%1e-11298%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds410410100%6e-11198%EU545988.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds40740795%7e-11099%KX261855.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds40340394%9e-10999%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds39939994%1e-10799%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds39939994%1e-10799%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds39939994%1e-10799%KM212963.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds39039091%5e-10599%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds39039091%5e-10599%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds38738791%7e-10499%KJ680134.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds37237285%1e-99100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds37237285%1e-99100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds37237285%1e-99100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds37237285%1e-99100%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds37237285%1e-99100%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds36736785%6e-9899%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds36736785%6e-9899%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds361361100%3e-9693%HQ234499.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds34934983%2e-9299%KT381874.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds343343100%7e-9192%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds33433499%4e-8891%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds334334100%4e-8891%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds334334100%4e-8891%KF268948.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds325325100%2e-8590%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds325325100%2e-8590%HQ234500.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds320320100%8e-8490%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome316316100%1e-8289%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome316316100%1e-8289%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome316316100%1e-8289%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome316316100%1e-8289%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds316316100%1e-8289%HQ234501.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds316316100%1e-8289%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds311311100%4e-8189%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome311311100%4e-8189%KU955594.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds311311100%4e-8189%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome311311100%4e-8189%AY632535.2Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds307307100%5e-8088%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID307307100%5e-8088%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds307307100%5e-8088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds307307100%5e-8088%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds307307100%5e-8088%HQ234498.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence298298100%3e-7788%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome29729769%9e-7799%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome29529567%3e-76100%KX101066.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28628665%2e-73100%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28028064%7e-72100%KX173844.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds275275100%3e-7085%KF383118.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds17017095%9e-3976%DQ859064.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome16816840%3e-3899%KX101064.1

LOCUS KX261854 240 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL11 polyprotein gene, partial cds. ACCESSION KX261854 VERSION KX261854.1 GI:1031621537 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 240) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 240) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..240 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL11" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>240 /codon_start=2 /product="polyprotein" /protein_id="ANG09403.1" /db_xref="GI:1031621538" /translation="VMILLIALAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTV MAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMA" ORIGIN 1 ggtcatgata ctgctgattg ccctggcata cagcatcagg tgcataggag tcagcaatag 61 ggactttgtg gaaggtatgt caggtgggac ttgggttgat gttgtcttgg aacatggagg 121 ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg ttacaacaac 181 agtcagcaac atggcggagg taagatccta ctgctatgag gcatcaatat cagacatggc

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Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 25, 2016) StatesTravel-associated cases* No. (%) (N=591)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona3 (1)0 (0)Arkansas3 (1)0 (0)California44 (7)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia4 (1)0 (0)Florida121 (20)0 (0)Georgia15 (3)0 (0)Hawaii9 (2)0 (0)Illinois16 (3)0 (0)Indiana6 (1)0 (0)Iowa6 (1)0 (0)Kansas2 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine5 (1)0 (0)Maryland17 (3)0 (0)Massachusetts16 (3)0 (0)Michigan4 (1)0 (0)Minnesota17 (3)0 (0)Mississippi3 (1)0 (0)Missouri3 (1)0 (0)Montana1 (<1)0 (0)Nebraska2 (<1)0 (0)Nevada6 (1)0 (0)New Hampshire3 (1)0 (0)New Jersey14 (2)0 (0)New Mexico1 (<1)0 (0)New York127 (22)0 (0)North Carolina12 (2)0 (0)Ohio12 (2)0 (0)Oklahoma4 (1)0 (0)Oregon6 (1)0 (0)Pennsylvania19 (3)0 (0)Rhode Island4 (1)0 (0) http://www.cdc.gov/zika/geo/united-states.html

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Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 25, 2016) StatesTravel-associated cases* No. (%) (N=591)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona3 (1)0 (0)Arkansas3 (1)0 (0)California44 (7)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia4 (1)0 (0)Florida121 (20)0 (0)Georgia15 (3)0 (0)Hawaii9 (2)0 (0)Illinois16 (3)0 (0)Indiana6 (1)0 (0)Iowa6 (1)0 (0)Kansas2 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine5 (1)0 (0)Maryland17 (3)0 (0)Massachusetts16 (3)0 (0)Michigan4 (1)0 (0)Minnesota17 (3)0 (0)Mississippi3 (1)0 (0)Missouri3 (1)0 (0)Montana1 (<1)0 (0)Nebraska2 (<1)0 (0)Nevada6 (1)0 (0)New Hampshire3 (1)0 (0)New Jersey14 (2)0 (0)New Mexico1 (<1)0 (0)New York127 (22)0 (0)North Carolina12 (2)0 (0) http://www.cdc.gov/zika/geo/united-states.html

At A Glance - Zika in the U.S.(as of May 25, 2016) North CarolinaTravel-associated Zika virus disease cases reported: 11Locally acquired vectorborne cases reported: 0 U.S. StatesTravel-associated Zika virus disease cases reported: 544Locally acquired vectorborne cases reported: 0 U.S. TerritoriesTravel-associated cases reported: 4Locally acquired vectorborne cases reported: 832

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Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 25, 2016) StatesTravel-associated cases* No. (%) (N=591)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona3 (1)0 (0)Arkansas3 (1)0 (0)California44 (7)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia4 (1)0 (0)Florida121 (20)0 (0)Georgia15 (3)0 (0)Hawaii9 (2)0 (0)Illinois16 (3)0 (0)Indiana6 (1)0 (0)Iowa6 (1)0 (0)Kansas2 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine5 (1)0 (0) http://www.cdc.gov/zika/geo/united-states.html